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1 ·a1bdd917b07fbaf66f7c1b4ea1936717·45956464·science·optional·gromacs-data_2025.0~beta-1_all.deb1 ·615026a4224a4e42621b4421521f9beb·45956876·science·optional·gromacs-data_2025.0~beta-1_all.deb
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4 ·b5c322f7c0b2a2eb544da9283c88f65c·174456·libdevel·optional·libgromacs-dev_2025.0~beta-1_amd64.deb4 ·b5c322f7c0b2a2eb544da9283c88f65c·174456·libdevel·optional·libgromacs-dev_2025.0~beta-1_amd64.deb
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gromacs-data_2025.0~beta-1_all.deb
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1 -rw-r--r--···0········0········0········4·2024-12-07·17:05:28.000000·debian-binary1 -rw-r--r--···0········0········0········4·2024-12-07·17:05:28.000000·debian-binary
2 -rw-r--r--···0········0········0···460076·2024-12-07·17:05:28.000000·control.tar.xz2 -rw-r--r--···0········0········0···460060·2024-12-07·17:05:28.000000·control.tar.xz
3 -rw-r--r--···0········0········0·45496196·2024-12-07·17:05:28.000000·data.tar.xz3 -rw-r--r--···0········0········0·45496624·2024-12-07·17:05:28.000000·data.tar.xz
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1 Package:·gromacs-data1 Package:·gromacs-data
2 Source:·gromacs2 Source:·gromacs
3 Version:·2025.0~beta-13 Version:·2025.0~beta-1
4 Architecture:·all4 Architecture:·all
5 Maintainer:·Debichem·Team·<debichem-devel@lists.alioth.debian.org>5 Maintainer:·Debichem·Team·<debichem-devel@lists.alioth.debian.org>
6 Installed-Size:·3286116 Installed-Size:·328608
7 Depends:·libjs-mathjax7 Depends:·libjs-mathjax
8 Recommends:·gromacs8 Recommends:·gromacs
9 Section:·science9 Section:·science
10 Priority:·optional10 Priority:·optional
11 Multi-Arch:·foreign11 Multi-Arch:·foreign
12 Homepage:·https://www.gromacs.org/12 Homepage:·https://www.gromacs.org/
13 Description:·GROMACS·molecular·dynamics·sim,·data·and·documentation13 Description:·GROMACS·molecular·dynamics·sim,·data·and·documentation
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75 <div><div·class="header">75 <div><div·class="header">
76 ··<div·class="headertitle"><div·class="title">Module·dependency·graph</div></div>76 ··<div·class="headertitle"><div·class="title">Module·dependency·graph</div></div>
77 </div><!--header-->77 </div><!--header-->
78 <div·class="contents">78 <div·class="contents">
79 <div·class="textblock"><p>The·graph·below·shows·the·dependencies·between·the·source·code·modules,·computed·from·include·statements·in·the·code.·For·documented·modules·(those·that·do·not·have·a·gray·background),·clicking·on·the·module·takes·you·to·the·module·documentation.·Legend·for·the·graph·can·be·found·below·the·graph.</p>79 <div·class="textblock"><p>The·graph·below·shows·the·dependencies·between·the·source·code·modules,·computed·from·include·statements·in·the·code.·For·documented·modules·(those·that·do·not·have·a·gray·background),·clicking·on·the·module·takes·you·to·the·module·documentation.·Legend·for·the·graph·can·be·found·below·the·graph.</p>
80 <div·class="dotgraph">80 <div·class="dotgraph">
81 <iframe·scrolling="no"·frameborder="0"·src="dot_module-deps.svg"·width="3744"·height="1712"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>81 <iframe·scrolling="no"·frameborder="0"·src="dot_module-deps.svg"·width="3759"·height="1796"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>
82 ·<h1><a·class="anchor"·id="autotoc_md49"></a>82 ·<h1><a·class="anchor"·id="autotoc_md49"></a>
83 Legend</h1>83 Legend</h1>
84 <p>The·graph·below·annotates·the·colors·and·line·styles·used·in·the·module·dependency·graph·above.·More·detailed·textual·annotation·is·below·the·graph.</p>84 <p>The·graph·below·annotates·the·colors·and·line·styles·used·in·the·module·dependency·graph·above.·More·detailed·textual·annotation·is·below·the·graph.</p>
85 <div·class="dotgraph">85 <div·class="dotgraph">
86 <iframe·scrolling="no"·frameborder="0"·src="dot_inline_dotgraph_2.svg"·width="440"·height="407"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>86 <iframe·scrolling="no"·frameborder="0"·src="dot_inline_dotgraph_2.svg"·width="440"·height="407"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div>
87 <p>Node·colors:·</p><dl>87 <p>Node·colors:·</p><dl>
88 <dt>gray·background·</dt>88 <dt>gray·background·</dt>
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Offset 250, 35 lines modifiedOffset 250, 35 lines modified
250 ····['matches_155',·['matches',·['../structanonymous__namespace_02sm__keywords_8cpp_03_1_1t__methoddata__kwstr.xhtml#a48e93adae942c05a1cb87c10c8477345',·1,·'anonymous_namespace{sm_keywords.cpp}::t_methoddata_kwstr']]],250 ····['matches_155',·['matches',·['../structanonymous__namespace_02sm__keywords_8cpp_03_1_1t__methoddata__kwstr.xhtml#a48e93adae942c05a1cb87c10c8477345',·1,·'anonymous_namespace{sm_keywords.cpp}::t_methoddata_kwstr']]],
251 ····['matchfullconfiguration_156',·['matchFullConfiguration',·['../classgmx_1_1test_1_1ConfMatch.xhtml#a539cc5f873f38eab1e92c7254eb4fe93',·1,·'gmx::test::ConfMatch']]],251 ····['matchfullconfiguration_156',·['matchFullConfiguration',·['../classgmx_1_1test_1_1ConfMatch.xhtml#a539cc5f873f38eab1e92c7254eb4fe93',·1,·'gmx::test::ConfMatch']]],
252 ····['matchtype_157',·['matchType',·['../structanonymous__namespace_02sm__keywords_8cpp_03_1_1t__methoddata__kwstr.xhtml#ae70c598952362cd86ea5a0ec0cfe9cf2',·1,·'anonymous_namespace{sm_keywords.cpp}::t_methoddata_kwstr']]],252 ····['matchtype_157',·['matchType',·['../structanonymous__namespace_02sm__keywords_8cpp_03_1_1t__methoddata__kwstr.xhtml#ae70c598952362cd86ea5a0ec0cfe9cf2',·1,·'anonymous_namespace{sm_keywords.cpp}::t_methoddata_kwstr']]],
253 ····['math_20library_158',·['The·SIMD·math·library',·['../page_simd.xhtml#autotoc_md70',·1,·'']]],253 ····['math_20library_158',·['The·SIMD·math·library',·['../page_simd.xhtml#autotoc_md70',·1,·'']]],
254 ····['matio_2ecpp_159',·['matio.cpp',·['../tests_2matio_8cpp.xhtml',·1,·'']]],254 ····['matio_2ecpp_159',·['matio.cpp',·['../tests_2matio_8cpp.xhtml',·1,·'']]],
255 ····['matlam_160',·['matlam',·['../classgmx_1_1Lincs.xhtml#a3da2ad9c2aa9800de6a5a83868e90d92',·1,·'gmx::Lincs']]],255 ····['matlam_160',·['matlam',·['../classgmx_1_1Lincs.xhtml#a3da2ad9c2aa9800de6a5a83868e90d92',·1,·'gmx::Lincs']]],
256 ····['matrix_161',·['matrix',·['../structt__matrix.xhtml#a1a09d637a51e9e5b526ae840a182d9ee',·1,·'t_matrix']]],256 ····['matrix_161',·['matrix',·['../structt__matrix.xhtml#a1a09d637a51e9e5b526ae840a182d9ee',·1,·'t_matrix']]],
257 ····['matrix_2ecpp_162',·['matrix.cpp',·['../math_2tests_2matrix_8cpp.xhtml',·1,·'(Global·Namespace)'],257 ····['matrix_2ecpp_162',·['matrix.cpp',·['../math_2matrix_8cpp.xhtml',·1,·'(Global·Namespace)'],
258 ········['../math_2matrix_8cpp.xhtml',·1,·'(Global·Namespace)']258 ········['../math_2tests_2matrix_8cpp.xhtml',·1,·'(Global·Namespace)']
259 ····]],259 ····]],
260 ····['matrix_2eh_163',·['matrix.h',·['../math_2include_2gromacs_2math_2matrix_8h.xhtml',·1,·'']]],260 ····['matrix_2eh_163',·['matrix.h',·['../math_2include_2gromacs_2math_2matrix_8h.xhtml',·1,·'']]],
261 ····['matrix3x3_164',·['matrix3x3',·['../namespacegmx_1_1test.xhtml#abe16d8d44b085b584568a1f5b2e57f2f',·1,·'gmx::test::Matrix3x3'],261 ····['matrix3x3_164',·['matrix3x3',·['../namespacegmx_1_1test.xhtml#abe16d8d44b085b584568a1f5b2e57f2f',·1,·'gmx::test::Matrix3x3'],
262 ········['../namespacegmx.xhtml#a8065c9cfb460c40c3c2699c728ecd3f4',·1,·'gmx::Matrix3x3']262 ········['../namespacegmx.xhtml#a8065c9cfb460c40c3c2699c728ecd3f4',·1,·'gmx::Matrix3x3']
263 ····]],263 ····]],
264 ····['matrix3x3constspan_165',·['Matrix3x3ConstSpan',·['../namespacegmx.xhtml#a589179a4042893247bfe78e630ee381f',·1,·'gmx']]],264 ····['matrix3x3constspan_165',·['Matrix3x3ConstSpan',·['../namespacegmx.xhtml#a589179a4042893247bfe78e630ee381f',·1,·'gmx']]],
265 ····['matrix3x3span_166',·['Matrix3x3Span',·['../namespacegmx.xhtml#a42b7945e249b8dd5a00cd733e679c2a9',·1,·'gmx']]],265 ····['matrix3x3span_166',·['Matrix3x3Span',·['../namespacegmx.xhtml#a42b7945e249b8dd5a00cd733e679c2a9',·1,·'gmx']]],
266 ····['matrix3x3tostring_167',·['Matrix3x3ToString',·['../structgmx_1_1test_1_1anonymous__namespace_02parrinellorahman_8cpp_03_1_1Matrix3x3ToString.xhtml',·1,·'gmx::test::anonymous_namespace{parrinellorahman.cpp}']]],266 ····['matrix3x3tostring_167',·['Matrix3x3ToString',·['../structgmx_1_1test_1_1anonymous__namespace_02parrinellorahman_8cpp_03_1_1Matrix3x3ToString.xhtml',·1,·'gmx::test::anonymous_namespace{parrinellorahman.cpp}']]],
267 ····['matrix_5f_168',·['matrix_',·['../structgmx_1_1MrcDensitySkewData.xhtml#a8341d52116450b5e201979b68356df03',·1,·'gmx::MrcDensitySkewData']]],267 ····['matrix_5f_168',·['matrix_',·['../structgmx_1_1MrcDensitySkewData.xhtml#a8341d52116450b5e201979b68356df03',·1,·'gmx::MrcDensitySkewData']]],
268 ····['matrix_5fconvert_169',·['matrix_convert',·['../pbc_8cpp.xhtml#aec6c71950b4b9e1c90429eff68ea4168',·1,·'pbc.cpp']]],268 ····['matrix_5fconvert_169',·['matrix_convert',·['../pbc_8cpp.xhtml#aec6c71950b4b9e1c90429eff68ea4168',·1,·'pbc.cpp']]],
269 ····['matrixvectormultiply_170',·['matrixVectorMultiply',·['../namespacegmx.xhtml#a2f6cbfad1dad185c82ec9bee081833c5',·1,·'gmx']]],269 ····['matrixvectormultiply_170',·['matrixVectorMultiply',·['../namespacegmx.xhtml#a2f6cbfad1dad185c82ec9bee081833c5',·1,·'gmx']]],
270 ····['max_171',·['max',·['../classgmx_1_1ExponentialDistribution.xhtml#a5db77b73c9d84977cd6a1e93427abb6b',·1,·'gmx::ExponentialDistribution::max()'],270 ····['max_171',·['max',·['../classgmx_1_1GammaDistribution.xhtml#af043df37641bf3c31adc4b46164ef94c',·1,·'gmx::GammaDistribution::max()'],
271 ········['../structgmx_1_1BoundingBox_1_1Corner.xhtml#a41d9f565256e2af79951232a328ce054',·1,·'gmx::BoundingBox::Corner::max()'],271 ········['../structgmx_1_1BoundingBox_1_1Corner.xhtml#a41d9f565256e2af79951232a328ce054',·1,·'gmx::BoundingBox::Corner::max()'],
272 ········['../classgmx_1_1TabulatedNormalDistribution.xhtml#a445e2fab20c2f008fd972f5e96cd8b68',·1,·'gmx::TabulatedNormalDistribution::max()'], 
273 ········['../classgmx_1_1GammaDistribution.xhtml#af043df37641bf3c31adc4b46164ef94c',·1,·'gmx::GammaDistribution::max()'],272 ········['../classgmx_1_1ExponentialDistribution.xhtml#a5db77b73c9d84977cd6a1e93427abb6b',·1,·'gmx::ExponentialDistribution::max()'],
 273 ········['../group__module__simd.xhtml#ga4edeef3c458f5c77cf3ceb80532a57ff',·1,·'gmx::max()'],
274 ········['../classgmx_1_1NormalDistribution.xhtml#aba294339d0eec4d12a1019d24848f0b9',·1,·'gmx::NormalDistribution::max()'],274 ········['../classgmx_1_1NormalDistribution.xhtml#aba294339d0eec4d12a1019d24848f0b9',·1,·'gmx::NormalDistribution::max()'],
 275 ········['../classgmx_1_1TabulatedNormalDistribution.xhtml#a445e2fab20c2f008fd972f5e96cd8b68',·1,·'gmx::TabulatedNormalDistribution::max()'],
275 ········['../namespacegmx.xhtml#a16f6bf4a20b14262f28168596d5bb8b9',·1,·'gmx::max(double·a,·double·b)'],276 ········['../namespacegmx.xhtml#a16f6bf4a20b14262f28168596d5bb8b9',·1,·'gmx::max(double·a,·double·b)'],
276 ········['../namespacegmx.xhtml#a35c7b010fbd32f5424afa0de0c70db6f',·1,·'gmx::max(float·a,·float·b)'],277 ········['../namespacegmx.xhtml#a35c7b010fbd32f5424afa0de0c70db6f',·1,·'gmx::max(float·a,·float·b)'],
277 ········['../group__module__simd.xhtml#ga4edeef3c458f5c77cf3ceb80532a57ff',·1,·'gmx::max(SimdFloat·a,·SimdFloat·b)'], 
278 ········['../group__module__simd.xhtml#gaceb279f0a831efc0d8e6be7d96c9e6d2',·1,·'gmx::max(SimdDouble·a,·SimdDouble·b)'],278 ········['../group__module__simd.xhtml#gaceb279f0a831efc0d8e6be7d96c9e6d2',·1,·'gmx::max(SimdDouble·a,·SimdDouble·b)'],
279 ········['../group__module__simd.xhtml#ga3c66081dde9666200461f364725a4085',·1,·'gmx::max(Simd4Float·a,·Simd4Float·b)'],279 ········['../group__module__simd.xhtml#ga3c66081dde9666200461f364725a4085',·1,·'gmx::max(Simd4Float·a,·Simd4Float·b)'],
280 ········['../classgmx_1_1ThreeFry2x64General.xhtml#a747866a072cff89a20b8f58621ae4bc5',·1,·'gmx::ThreeFry2x64General::max()'],280 ········['../classgmx_1_1ThreeFry2x64General.xhtml#a747866a072cff89a20b8f58621ae4bc5',·1,·'gmx::ThreeFry2x64General::max()'],
281 ········['../group__module__simd.xhtml#ga68bbfb58d0ab7d2362d0efde15c14ca3',·1,·'gmx::max(Simd4Double·a,·Simd4Double·b)'],281 ········['../group__module__simd.xhtml#ga68bbfb58d0ab7d2362d0efde15c14ca3',·1,·'gmx::max(Simd4Double·a,·Simd4Double·b)'],
282 ········['../namespacegmx.xhtml#aa8475501c67be44a07c58f4aa43eed23',·1,·'gmx::max(const·gmx::BasicVector&lt;·float·&gt;·&amp;v1,·const·gmx::BasicVector&lt;·float·&gt;·&amp;v2)'],282 ········['../namespacegmx.xhtml#aa8475501c67be44a07c58f4aa43eed23',·1,·'gmx::max(const·gmx::BasicVector&lt;·float·&gt;·&amp;v1,·const·gmx::BasicVector&lt;·float·&gt;·&amp;v2)'],
283 ········['../classgmx_1_1UniformIntDistribution.xhtml#af3bf0caf1c448e8f298a0d2b60b34733',·1,·'gmx::UniformIntDistribution::max()'],283 ········['../classgmx_1_1UniformIntDistribution.xhtml#af3bf0caf1c448e8f298a0d2b60b34733',·1,·'gmx::UniformIntDistribution::max()'],
284 ········['../classgmx_1_1UniformRealDistribution.xhtml#abf888030231e57e8c412cecd63f70f78',·1,·'gmx::UniformRealDistribution::max()']284 ········['../classgmx_1_1UniformRealDistribution.xhtml#abf888030231e57e8c412cecd63f70f78',·1,·'gmx::UniformRealDistribution::max()']
Offset 771, 16 lines modifiedOffset 771, 16 lines modified
771 ····['mrcdatamode_481',·['MrcDataMode',·['../namespacegmx.xhtml#a4355a7e0f393d42cbb5b2a47aefea966',·1,·'gmx']]],771 ····['mrcdatamode_481',·['MrcDataMode',·['../namespacegmx.xhtml#a4355a7e0f393d42cbb5b2a47aefea966',·1,·'gmx']]],
772 ····['mrcdatastatistics_482',·['MrcDataStatistics',·['../structgmx_1_1MrcDataStatistics.xhtml',·1,·'gmx']]],772 ····['mrcdatastatistics_482',·['MrcDataStatistics',·['../structgmx_1_1MrcDataStatistics.xhtml',·1,·'gmx']]],
773 ····['mrcdensitymap_2ecpp_483',·['mrcdensitymap.cpp',·['../tests_2mrcdensitymap_8cpp.xhtml',·1,·'(Global·Namespace)'],773 ····['mrcdensitymap_2ecpp_483',·['mrcdensitymap.cpp',·['../tests_2mrcdensitymap_8cpp.xhtml',·1,·'(Global·Namespace)'],
774 ········['../mrcdensitymap_8cpp.xhtml',·1,·'(Global·Namespace)']774 ········['../mrcdensitymap_8cpp.xhtml',·1,·'(Global·Namespace)']
775 ····]],775 ····]],
776 ····['mrcdensitymap_2eh_484',·['mrcdensitymap.h',·['../mrcdensitymap_8h.xhtml',·1,·'']]],776 ····['mrcdensitymap_2eh_484',·['mrcdensitymap.h',·['../mrcdensitymap_8h.xhtml',·1,·'']]],
777 ····['mrcdensitymapheader_485',·['MrcDensityMapHeader',·['../structgmx_1_1MrcDensityMapHeader.xhtml',·1,·'gmx']]],777 ····['mrcdensitymapheader_485',·['MrcDensityMapHeader',·['../structgmx_1_1MrcDensityMapHeader.xhtml',·1,·'gmx']]],
778 ····['mrcdensitymapheader_2ecpp_486',·['mrcdensitymapheader.cpp',·['../tests_2mrcdensitymapheader_8cpp.xhtml',·1,·'(Global·Namespace)'],778 ····['mrcdensitymapheader_2ecpp_486',·['mrcdensitymapheader.cpp',·['../mrcdensitymapheader_8cpp.xhtml',·1,·'(Global·Namespace)'],
779 ········['../mrcdensitymapheader_8cpp.xhtml',·1,·'(Global·Namespace)']779 ········['../tests_2mrcdensitymapheader_8cpp.xhtml',·1,·'(Global·Namespace)']
780 ····]],780 ····]],
781 ····['mrcdensitymapheader_2eh_487',·['mrcdensitymapheader.h',·['../mrcdensitymapheader_8h.xhtml',·1,·'']]],781 ····['mrcdensitymapheader_2eh_487',·['mrcdensitymapheader.h',·['../mrcdensitymapheader_8h.xhtml',·1,·'']]],
782 ····['mrcdensitymapoffloatfromfilereader_488',·['mrcdensitymapoffloatfromfilereader',·['../classgmx_1_1MrcDensityMapOfFloatFromFileReader.xhtml#a5e4d0693919c91334eed2bd9942470bc',·1,·'gmx::MrcDensityMapOfFloatFromFileReader::MrcDensityMapOfFloatFromFileReader()'],782 ····['mrcdensitymapoffloatfromfilereader_488',·['mrcdensitymapoffloatfromfilereader',·['../classgmx_1_1MrcDensityMapOfFloatFromFileReader.xhtml#a5e4d0693919c91334eed2bd9942470bc',·1,·'gmx::MrcDensityMapOfFloatFromFileReader::MrcDensityMapOfFloatFromFileReader()'],
783 ········['../classgmx_1_1MrcDensityMapOfFloatFromFileReader.xhtml',·1,·'gmx::MrcDensityMapOfFloatFromFileReader']783 ········['../classgmx_1_1MrcDensityMapOfFloatFromFileReader.xhtml',·1,·'gmx::MrcDensityMapOfFloatFromFileReader']
784 ····]],784 ····]],
785 ····['mrcdensitymapoffloatreader_489',·['mrcdensitymapoffloatreader',·['../classgmx_1_1MrcDensityMapOfFloatReader.xhtml#aa968d4e30f192514e635552e9492aad8',·1,·'gmx::MrcDensityMapOfFloatReader::MrcDensityMapOfFloatReader()'],785 ····['mrcdensitymapoffloatreader_489',·['mrcdensitymapoffloatreader',·['../classgmx_1_1MrcDensityMapOfFloatReader.xhtml#aa968d4e30f192514e635552e9492aad8',·1,·'gmx::MrcDensityMapOfFloatReader::MrcDensityMapOfFloatReader()'],
786 ········['../classgmx_1_1MrcDensityMapOfFloatReader.xhtml',·1,·'gmx::MrcDensityMapOfFloatReader']786 ········['../classgmx_1_1MrcDensityMapOfFloatReader.xhtml',·1,·'gmx::MrcDensityMapOfFloatReader']
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Offset 335, 19 lines modifiedOffset 335, 19 lines modified
335 ····['newhistogramsize_222',·['newHistogramSize',·['../classgmx_1_1HistogramSize.xhtml#a0841126e946757a56510a5412548efa3',·1,·'gmx::HistogramSize']]],335 ····['newhistogramsize_222',·['newHistogramSize',·['../classgmx_1_1HistogramSize.xhtml#a0841126e946757a56510a5412548efa3',·1,·'gmx::HistogramSize']]],
336 ····['newsimulation_223',·['NewSimulation',·['../namespacegmx.xhtml#acae779a4433c059b8816709407cd27b3a346169ead23d39c22768fa2c3510aaea',·1,·'gmx']]],336 ····['newsimulation_223',·['NewSimulation',·['../namespacegmx.xhtml#acae779a4433c059b8816709407cd27b3a346169ead23d39c22768fa2c3510aaea',·1,·'gmx']]],
337 ····['newsystemcenter_224',·['NewSystemCenter',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a8094e4520894dd8af304ba04684cd6b7',·1,·'gmx']]],337 ····['newsystemcenter_224',·['NewSystemCenter',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a8094e4520894dd8af304ba04684cd6b7',·1,·'gmx']]],
338 ····['newx_225',·['newx',·['../structMoleculePatch.xhtml#ab1a814fc2f62b8d5680f35c4d6ad1dd9',·1,·'MoleculePatch']]],338 ····['newx_225',·['newx',·['../structMoleculePatch.xhtml#ab1a814fc2f62b8d5680f35c4d6ad1dd9',·1,·'MoleculePatch']]],
339 ····['nex_226',·['nex',·['../structgmx__repl__ex.xhtml#ab5c0bdf0ec427dd6f3423b400d5dc4c4',·1,·'gmx_repl_ex']]],339 ····['nex_226',·['nex',·['../structgmx__repl__ex.xhtml#ab5c0bdf0ec427dd6f3423b400d5dc4c4',·1,·'gmx_repl_ex']]],
340 ····['nexchange_227',·['nexchange',·['../structgmx__repl__ex.xhtml#a446715d4e598142c737560359e6cf405',·1,·'gmx_repl_ex']]],340 ····['nexchange_227',·['nexchange',·['../structgmx__repl__ex.xhtml#a446715d4e598142c737560359e6cf405',·1,·'gmx_repl_ex']]],
341 ····['nexpsel_228',·['nexpsel',·['../structgmx__sel__lexer__t.xhtml#a5695b1b723a0613de0aed182033788bf',·1,·'gmx_sel_lexer_t']]],341 ····['nexpsel_228',·['nexpsel',·['../structgmx__sel__lexer__t.xhtml#a5695b1b723a0613de0aed182033788bf',·1,·'gmx_sel_lexer_t']]],
342 ····['next_229',·['next',·['../structgmx__fft__fftpack.xhtml#a17ec9a27f31d3ba60a14e930f20ca280',·1,·'gmx_fft_fftpack::next'], 
343 ········['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01E0_00_01StaticExtents_8_8_8_01_4.xhtml#a9af19753b4749ebb287aecd5141df0d1',·1,·'gmx::detail::extents_analyse&lt;·R,·E0,·StaticExtents...·&gt;::next'],342 ····['next_229',·['next',·['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01E0_00_01StaticExtents_8_8_8_01_4.xhtml#a9af19753b4749ebb287aecd5141df0d1',·1,·'gmx::detail::extents_analyse&lt;·R,·E0,·StaticExtents...·&gt;::next'],
344 ········['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01dynamic__extent_00_01StaticExtents_8_8_8_01_4.xhtml#a1bad4b0bda364b2dc302abe4607512a0',·1,·'gmx::detail::extents_analyse&lt;·R,·dynamic_extent,·StaticExtents...·&gt;::next'],343 ········['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01dynamic__extent_00_01StaticExtents_8_8_8_01_4.xhtml#a1bad4b0bda364b2dc302abe4607512a0',·1,·'gmx::detail::extents_analyse&lt;·R,·dynamic_extent,·StaticExtents...·&gt;::next'],
345 ········['../structgmx__ana__poscalc__t.xhtml#a5f3be05793cf0ea48f549894f8fe6fa6',·1,·'gmx_ana_poscalc_t::next'],344 ········['../structgmx__ana__poscalc__t.xhtml#a5f3be05793cf0ea48f549894f8fe6fa6',·1,·'gmx_ana_poscalc_t::next'],
346 ········['../classgmx_1_1SelectionTreeElement.xhtml#a9fdde6f3d324aebbb90c4e12e9645485',·1,·'gmx::SelectionTreeElement::next'],345 ········['../classgmx_1_1SelectionTreeElement.xhtml#a9fdde6f3d324aebbb90c4e12e9645485',·1,·'gmx::SelectionTreeElement::next'],
 346 ········['../structgmx__fft__fftpack.xhtml#a17ec9a27f31d3ba60a14e930f20ca280',·1,·'gmx_fft_fftpack::next'],
347 ········['../structt__symbuf.xhtml#ab0c492ccab37bb7c8315b7430b7aaa27',·1,·'t_symbuf::next']347 ········['../structt__symbuf.xhtml#ab0c492ccab37bb7c8315b7430b7aaa27',·1,·'t_symbuf::next']
348 ····]],348 ····]],
349 ····['next_5fextents_5fanalyse_230',·['next_extents_analyse',·['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01E0_00_01StaticExtents_8_8_8_01_4.xhtml#a7e57e8e7bd9b182d5ff296e8fb9b7cf8',·1,·'gmx::detail::extents_analyse&lt;·R,·E0,·StaticExtents...·&gt;::next_extents_analyse'],349 ····['next_5fextents_5fanalyse_230',·['next_extents_analyse',·['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01E0_00_01StaticExtents_8_8_8_01_4.xhtml#a7e57e8e7bd9b182d5ff296e8fb9b7cf8',·1,·'gmx::detail::extents_analyse&lt;·R,·E0,·StaticExtents...·&gt;::next_extents_analyse'],
350 ········['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01dynamic__extent_00_01StaticExtents_8_8_8_01_4.xhtml#ab70f7a0a4920340f3f09f9e8eb3d5c29',·1,·'gmx::detail::extents_analyse&lt;·R,·dynamic_extent,·StaticExtents...·&gt;::next_extents_analyse']350 ········['../structgmx_1_1detail_1_1extents__analyse_3_01R_00_01dynamic__extent_00_01StaticExtents_8_8_8_01_4.xhtml#ab70f7a0a4920340f3f09f9e8eb3d5c29',·1,·'gmx::detail::extents_analyse&lt;·R,·dynamic_extent,·StaticExtents...·&gt;::next_extents_analyse']
351 ····]],351 ····]],
352 ····['next_5fgroup_5findex_231',·['next_group_index',·['../group__module__selection.xhtml#ga721068c6fc50538dc245b27a8c6cf958',·1,·'indexutil.cpp']]],352 ····['next_5fgroup_5findex_231',·['next_group_index',·['../group__module__selection.xhtml#ga721068c6fc50538dc245b27a8c6cf958',·1,·'indexutil.cpp']]],
353 ····['next_5ftype_232',·['next_type',·['../structgmx_1_1BuildMDModulesNotifier_3_01CurrentCallParameter_00_01CallParameter_8_8_8_01_4.xhtml#a0555d4d7fc3b4b54776a84f962bacef7',·1,·'gmx::BuildMDModulesNotifier&lt;·CurrentCallParameter,·CallParameter...·&gt;']]],353 ····['next_5ftype_232',·['next_type',·['../structgmx_1_1BuildMDModulesNotifier_3_01CurrentCallParameter_00_01CallParameter_8_8_8_01_4.xhtml#a0555d4d7fc3b4b54776a84f962bacef7',·1,·'gmx::BuildMDModulesNotifier&lt;·CurrentCallParameter,·CallParameter...·&gt;']]],
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366 ····['nfile_5f_245',·['nFile_',·['../classgmx_1_1LegacySimulatorData.xhtml#aa52febb5287e6fc6e872816c13efbd3f',·1,·'gmx::LegacySimulatorData']]],366 ····['nfile_5f_245',·['nFile_',·['../classgmx_1_1LegacySimulatorData.xhtml#aa52febb5287e6fc6e872816c13efbd3f',·1,·'gmx::LegacySimulatorData']]],
367 ····['nforces_246',·['nforces',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#ab24e67665d5044ffe1cb14fbd9dcfb56',·1,·'gmx::ImdSession::Impl']]],367 ····['nforces_246',·['nforces',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#ab24e67665d5044ffe1cb14fbd9dcfb56',·1,·'gmx::ImdSession::Impl']]],
368 ····['nfp_5fffn_247',·['nfp_ffn',·['../expfit_8cpp.xhtml#a0381a3f406e1b936be009fb50c833804',·1,·'expfit.cpp']]],368 ····['nfp_5fffn_247',·['nfp_ffn',·['../expfit_8cpp.xhtml#a0381a3f406e1b936be009fb50c833804',·1,·'expfit.cpp']]],
369 ····['ngrids_248',·['ngrids',·['../structPmeShared.xhtml#a7ec2b0b4a29f93f872dfc8744ebbcca5',·1,·'PmeShared']]],369 ····['ngrids_248',·['ngrids',·['../structPmeShared.xhtml#a7ec2b0b4a29f93f872dfc8744ebbcca5',·1,·'PmeShared']]],
370 ····['ngroup_249',·['ngroup',·['../structt__pullcoord.xhtml#a833f7309760f611835ffa1e255bf82ec',·1,·'t_pullcoord']]],370 ····['ngroup_249',·['ngroup',·['../structt__pullcoord.xhtml#a833f7309760f611835ffa1e255bf82ec',·1,·'t_pullcoord']]],
371 ····['ngrp_250',·['ngrp',·['../structt__swap.xhtml#a2d99dab548bfeee6abab00b39559a779',·1,·'t_swap']]],371 ····['ngrp_250',·['ngrp',·['../structt__swap.xhtml#a2d99dab548bfeee6abab00b39559a779',·1,·'t_swap']]],
372 ····['ngtc_251',·['ngtc',·['../structCheckpointHeaderContents.xhtml#af6ace003545922285e2a3384dd377cc2',·1,·'CheckpointHeaderContents::ngtc'],372 ····['ngtc_251',·['ngtc',·['../structTpxFileHeader.xhtml#ac07dd4af0bce2c2f18a936069fd8628e',·1,·'TpxFileHeader::ngtc'],
373 ········['../classt__state.xhtml#ade0c0efd154b1336530f2f049782f12b',·1,·'t_state::ngtc'],373 ········['../classt__state.xhtml#ade0c0efd154b1336530f2f049782f12b',·1,·'t_state::ngtc'],
374 ········['../structTpxFileHeader.xhtml#ac07dd4af0bce2c2f18a936069fd8628e',·1,·'TpxFileHeader::ngtc']374 ········['../structCheckpointHeaderContents.xhtml#af6ace003545922285e2a3384dd377cc2',·1,·'CheckpointHeaderContents::ngtc']
375 ····]],375 ····]],
376 ····['nhack_252',·['nhack',·['../structMoleculePatchDatabase.xhtml#a37eec684265604eb63c24e9cfa5bd2fb',·1,·'MoleculePatchDatabase']]],376 ····['nhack_252',·['nhack',·['../structMoleculePatchDatabase.xhtml#a37eec684265604eb63c24e9cfa5bd2fb',·1,·'MoleculePatchDatabase']]],
377 ····['nhchainlength_253',·['nhchainlength',·['../classt__state.xhtml#a62aa2af58d908ef31d7c2cccfb481ee1',·1,·'t_state::nhchainlength'],377 ····['nhchainlength_253',·['nhchainlength',·['../classt__state.xhtml#a62aa2af58d908ef31d7c2cccfb481ee1',·1,·'t_state::nhchainlength'],
378 ········['../structCheckpointHeaderContents.xhtml#a088d5470c6f8108623a673b796c823d9',·1,·'CheckpointHeaderContents::nhchainlength']378 ········['../structCheckpointHeaderContents.xhtml#a088d5470c6f8108623a673b796c823d9',·1,·'CheckpointHeaderContents::nhchainlength']
379 ····]],379 ····]],
380 ····['nhcusage_254',·['NhcUsage',·['../namespacegmx.xhtml#ac8f59b82a88d690750974cad2ecb2d4d',·1,·'gmx']]],380 ····['nhcusage_254',·['NhcUsage',·['../namespacegmx.xhtml#ac8f59b82a88d690750974cad2ecb2d4d',·1,·'gmx']]],
381 ····['nhpres_5fvxi_255',·['nhpres_vxi',·['../classt__state.xhtml#aad9a0d825da2388a15eaef5addeba9ad',·1,·'t_state::nhpres_vxi'], 
382 ········['../structgmx_1_1PTCouplingArrays.xhtml#a0e8319265b9eb8226594a7bd6492a676',·1,·'gmx::PTCouplingArrays::nhpres_vxi']381 ····['nhpres_5fvxi_255',·['nhpres_vxi',·['../structgmx_1_1PTCouplingArrays.xhtml#a0e8319265b9eb8226594a7bd6492a676',·1,·'gmx::PTCouplingArrays::nhpres_vxi'],
 382 ········['../classt__state.xhtml#aad9a0d825da2388a15eaef5addeba9ad',·1,·'t_state::nhpres_vxi']
383 ····]],383 ····]],
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384 ····['nhpres_5fxi_256',·['nhpres_xi',·['../structgmx_1_1PTCouplingArrays.xhtml#a62b4ab2b4bc6e4eb572ac6a9f3d9b48a',·1,·'gmx::PTCouplingArrays::nhpres_xi'],385 ········['../structgmx_1_1PTCouplingArrays.xhtml#a62b4ab2b4bc6e4eb572ac6a9f3d9b48a',·1,·'gmx::PTCouplingArrays::nhpres_xi']
385 ········['../classt__state.xhtml#aad70ff9fb16e28b424c2b817618409d0',·1,·'t_state::nhpres_xi'] 
386 ····]],386 ····]],
387 ····['nhx_257',·['nhx',·['../structt__bb.xhtml#a21cae00a89fd32fdfbaf293490545373',·1,·'t_bb']]],387 ····['nhx_257',·['nhx',·['../structt__bb.xhtml#a21cae00a89fd32fdfbaf293490545373',·1,·'t_bb']]],
388 ····['nhydrogens_258',·['nHydrogens',·['../structVirtualSiteConfiguration.xhtml#a1bb9b56fb2933b0895d9e5c836434fe4',·1,·'VirtualSiteConfiguration']]],388 ····['nhydrogens_258',·['nHydrogens',·['../structVirtualSiteConfiguration.xhtml#a1bb9b56fb2933b0895d9e5c836434fe4',·1,·'VirtualSiteConfiguration']]],
389 ····['niceheader_259',·['niceHeader',·['../namespacegmx.xhtml#a7ffeb99198d2e37e902971b17a673a47',·1,·'gmx']]],389 ····['niceheader_259',·['niceHeader',·['../namespacegmx.xhtml#a7ffeb99198d2e37e902971b17a673a47',·1,·'gmx']]],
390 ····['niceheader_2ecpp_260',·['niceheader.cpp',·['../niceheader_8cpp.xhtml',·1,·'']]],390 ····['niceheader_2ecpp_260',·['niceheader.cpp',·['../niceheader_8cpp.xhtml',·1,·'']]],
391 ····['niceheader_2eh_261',·['niceheader.h',·['../niceheader_8h.xhtml',·1,·'']]],391 ····['niceheader_2eh_261',·['niceheader.h',·['../niceheader_8h.xhtml',·1,·'']]],
392 ····['nicelevel_262',·['niceLevel',·['../classgmx_1_1CommandLineCommonOptionsHolder.xhtml#ae401a78d576830753b20012c99eee3af',·1,·'gmx::CommandLineCommonOptionsHolder']]],392 ····['nicelevel_262',·['niceLevel',·['../classgmx_1_1CommandLineCommonOptionsHolder.xhtml#ae401a78d576830753b20012c99eee3af',·1,·'gmx::CommandLineCommonOptionsHolder']]],
Offset 408, 29 lines modifiedOffset 408, 29 lines modified
408 ····['nmolpast_272',·['nMolPast',·['../structswap__compartment.xhtml#ae7d83b4eb0caa3600d29b02c66018c75',·1,·'swap_compartment']]],408 ····['nmolpast_272',·['nMolPast',·['../structswap__compartment.xhtml#ae7d83b4eb0caa3600d29b02c66018c75',·1,·'swap_compartment']]],
409 ····['nmolreq_273',·['nMolReq',·['../structswap__compartment.xhtml#a7a969f28baf7c47c1a1c585efb67d042',·1,·'swap_compartment']]],409 ····['nmolreq_273',·['nMolReq',·['../structswap__compartment.xhtml#a7a969f28baf7c47c1a1c585efb67d042',·1,·'swap_compartment']]],
410 ····['nmoves_274',·['nmoves',·['../structgmx__repl__ex.xhtml#ac8dd9c7860121f300cbe0e223a6be35c',·1,·'gmx_repl_ex']]],410 ····['nmoves_274',·['nmoves',·['../structgmx__repl__ex.xhtml#ac8dd9c7860121f300cbe0e223a6be35c',·1,·'gmx_repl_ex']]],
411 ····['nmtomrcunits_275',·['nmToMrcUnits',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a526bc78791409ce07ebfe4efc7623802',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],411 ····['nmtomrcunits_275',·['nmToMrcUnits',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a526bc78791409ce07ebfe4efc7623802',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],
412 ····['nn_276',·['nn',·['../structPmeShared.xhtml#af90553b49f49f598835c9681c8746a8d',·1,·'PmeShared']]],412 ····['nn_276',·['nn',·['../structPmeShared.xhtml#af90553b49f49f598835c9681c8746a8d',·1,·'PmeShared']]],
413 ····['nname_277',·['nname',·['../structMoleculePatch.xhtml#a242596f9e718d07894ab32198720544d',·1,·'MoleculePatch']]],413 ····['nname_277',·['nname',·['../structMoleculePatch.xhtml#a242596f9e718d07894ab32198720544d',·1,·'MoleculePatch']]],
414 ····['nnext_278',·['Nnext',·['../structt__bb.xhtml#ad223cd6a59d5e077cc565766f6f237f5',·1,·'t_bb']]],414 ····['nnext_278',·['Nnext',·['../structt__bb.xhtml#ad223cd6a59d5e077cc565766f6f237f5',·1,·'t_bb']]],
 415 ····['nnhpres_279',·['nnhpres',·['../classt__state.xhtml#a554d8189a9b63e016efb91957509e623',·1,·'t_state::nnhpres'],
415 ····['nnhpres_279',·['nnhpres',·['../structCheckpointHeaderContents.xhtml#adc4e78ec35c4403710adac94141a33fa',·1,·'CheckpointHeaderContents::nnhpres'],416 ········['../structCheckpointHeaderContents.xhtml#adc4e78ec35c4403710adac94141a33fa',·1,·'CheckpointHeaderContents::nnhpres']
416 ········['../classt__state.xhtml#a554d8189a9b63e016efb91957509e623',·1,·'t_state::nnhpres'] 
417 ····]],417 ····]],
 418 ····['nnodes_280',·['nnodes',·['../structPmeShared.xhtml#a9a07e823867d654212cdf520e2538121',·1,·'PmeShared::nnodes'],
418 ····['nnodes_280',·['nnodes',·['../structCheckpointHeaderContents.xhtml#a6b8fa08267c339a937cb223d6b59f22f',·1,·'CheckpointHeaderContents::nnodes'],419 ········['../structCheckpointHeaderContents.xhtml#a6b8fa08267c339a937cb223d6b59f22f',·1,·'CheckpointHeaderContents::nnodes']
419 ········['../structPmeShared.xhtml#a9a07e823867d654212cdf520e2538121',·1,·'PmeShared::nnodes'] 
420 ····]],420 ····]],
421 ····['nnodesx_281',·['nnodesX',·['../structPmeShared.xhtml#a8452479239784ced7afff1e051830952',·1,·'PmeShared']]],421 ····['nnodesx_281',·['nnodesX',·['../structPmeShared.xhtml#a8452479239784ced7afff1e051830952',·1,·'PmeShared']]],
422 ····['nnodesy_282',·['nnodesY',·['../structPmeShared.xhtml#a37add1a0f09eb17756daf2c246a87cb8',·1,·'PmeShared']]],422 ····['nnodesy_282',·['nnodesY',·['../structPmeShared.xhtml#a37add1a0f09eb17756daf2c246a87cb8',·1,·'PmeShared']]],
423 ····['nnpot_2ecpp_283',·['nnpot.cpp',·['../nnpot_8cpp.xhtml',·1,·'(Global·Namespace)'],423 ····['nnpot_2ecpp_283',·['nnpot.cpp',·['../tests_2nnpot_8cpp.xhtml',·1,·'(Global·Namespace)'],
424 ········['../tests_2nnpot_8cpp.xhtml',·1,·'(Global·Namespace)']424 ········['../nnpot_8cpp.xhtml',·1,·'(Global·Namespace)']
425 ····]],425 ····]],
426 ····['nnpot_2eh_284',·['nnpot.h',·['../nnpot_8h.xhtml',·1,·'']]],426 ····['nnpot_2eh_284',·['nnpot.h',·['../nnpot_8h.xhtml',·1,·'']]],
427 ····['nnpotforceprovider_285',·['NNPotForceProvider',·['../classgmx_1_1NNPotForceProvider.xhtml',·1,·'gmx']]],427 ····['nnpotforceprovider_285',·['NNPotForceProvider',·['../classgmx_1_1NNPotForceProvider.xhtml',·1,·'gmx']]],
428 ····['nnpotforceprovider_2ecpp_286',·['nnpotforceprovider.cpp',·['../tests_2nnpotforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],428 ····['nnpotforceprovider_2ecpp_286',·['nnpotforceprovider.cpp',·['../nnpotforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],
429 ········['../nnpotforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']429 ········['../tests_2nnpotforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']
430 ····]],430 ····]],
431 ····['nnpotforceprovider_2eh_287',·['nnpotforceprovider.h',·['../nnpotforceprovider_8h.xhtml',·1,·'']]],431 ····['nnpotforceprovider_2eh_287',·['nnpotforceprovider.h',·['../nnpotforceprovider_8h.xhtml',·1,·'']]],
432 ····['nnpotforceprovider_5fstub_2ecpp_288',·['nnpotforceprovider_stub.cpp',·['../nnpotforceprovider__stub_8cpp.xhtml',·1,·'']]],432 ····['nnpotforceprovider_5fstub_2ecpp_288',·['nnpotforceprovider_stub.cpp',·['../nnpotforceprovider__stub_8cpp.xhtml',·1,·'']]],
433 ····['nnpotmdmodule_289',·['NNPotMDModule',·['../classgmx_1_1anonymous__namespace_02nnpot_8cpp_03_1_1NNPotMDModule.xhtml',·1,·'gmx::anonymous_namespace{nnpot.cpp}']]],433 ····['nnpotmdmodule_289',·['NNPotMDModule',·['../classgmx_1_1anonymous__namespace_02nnpot_8cpp_03_1_1NNPotMDModule.xhtml',·1,·'gmx::anonymous_namespace{nnpot.cpp}']]],
434 ····['nnpotmdptransformfromstring_290',·['NNPotMdpTransformFromString',·['../namespacegmx.xhtml#a965719fa61deaf0dcfcf8903463e243d',·1,·'gmx']]],434 ····['nnpotmdptransformfromstring_290',·['NNPotMdpTransformFromString',·['../namespacegmx.xhtml#a965719fa61deaf0dcfcf8903463e243d',·1,·'gmx']]],
435 ····['nnpotmodel_2eh_291',·['nnpotmodel.h',·['../nnpotmodel_8h.xhtml',·1,·'']]],435 ····['nnpotmodel_2eh_291',·['nnpotmodel.h',·['../nnpotmodel_8h.xhtml',·1,·'']]],
436 ····['nnpotmoduleinfo_292',·['NNPotModuleInfo',·['../structgmx_1_1NNPotModuleInfo.xhtml',·1,·'gmx']]],436 ····['nnpotmoduleinfo_292',·['NNPotModuleInfo',·['../structgmx_1_1NNPotModuleInfo.xhtml',·1,·'gmx']]],
Offset 438, 32 lines modifiedOffset 438, 32 lines modified
438 ········['../tests_2nnpotoptions_8cpp.xhtml',·1,·'(Global·Namespace)']438 ········['../tests_2nnpotoptions_8cpp.xhtml',·1,·'(Global·Namespace)']
439 ····]],439 ····]],
440 ····['nnpotoptions_2eh_294',·['nnpotoptions.h',·['../nnpotoptions_8h.xhtml',·1,·'']]],440 ····['nnpotoptions_2eh_294',·['nnpotoptions.h',·['../nnpotoptions_8h.xhtml',·1,·'']]],
441 ····['nnpotparameters_295',·['NNPotParameters',·['../structgmx_1_1NNPotParameters.xhtml',·1,·'gmx']]],441 ····['nnpotparameters_295',·['NNPotParameters',·['../structgmx_1_1NNPotParameters.xhtml',·1,·'gmx']]],
442 ····['nnpottopologypreprocessor_296',·['nnpottopologypreprocessor',·['../classgmx_1_1NNPotTopologyPreprocessor.xhtml#afb131c39ea21535f2f145444d8dbfc5e',·1,·'gmx::NNPotTopologyPreprocessor::NNPotTopologyPreprocessor()'],442 ····['nnpottopologypreprocessor_296',·['nnpottopologypreprocessor',·['../classgmx_1_1NNPotTopologyPreprocessor.xhtml#afb131c39ea21535f2f145444d8dbfc5e',·1,·'gmx::NNPotTopologyPreprocessor::NNPotTopologyPreprocessor()'],
443 ········['../classgmx_1_1NNPotTopologyPreprocessor.xhtml',·1,·'gmx::NNPotTopologyPreprocessor']443 ········['../classgmx_1_1NNPotTopologyPreprocessor.xhtml',·1,·'gmx::NNPotTopologyPreprocessor']
444 ····]],444 ····]],
445 ····['nnpottopologypreprocessor_2ecpp_297',·['nnpottopologypreprocessor.cpp',·['../tests_2nnpottopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],445 ····['nnpottopologypreprocessor_2ecpp_297',·['nnpottopologypreprocessor.cpp',·['../nnpottopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],
446 ········['../nnpottopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']446 ········['../tests_2nnpottopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']
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475 ····['nodes_311',·['nodes',·['../structgmx_1_1HardwareTopology_1_1Numa.xhtml#a09d015a6bc89da23f7152cbc5495a460',·1,·'gmx::HardwareTopology::Numa']]],475 ····['nodes_311',·['nodes',·['../structgmx_1_1HardwareTopology_1_1Numa.xhtml#a09d015a6bc89da23f7152cbc5495a460',·1,·'gmx::HardwareTopology::Numa']]],
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477 ····['non_20bonded_20algorithm_313',·['The·NxM·atom-cluster·non-bonded·algorithm',·['../page_nbnxm.xhtml',·1,·'index']]],477 ····['non_20bonded_20algorithm_313',·['The·NxM·atom-cluster·non-bonded·algorithm',·['../page_nbnxm.xhtml',·1,·'index']]],
478 ····['non_20bonded_20interaction_20module_314',·['Short-range·non-bonded·interaction·module',·['../group______module__nbnxm.xhtml',·1,·'']]],478 ····['non_20bonded_20interaction_20module_314',·['Short-range·non-bonded·interaction·module',·['../group______module__nbnxm.xhtml',·1,·'']]],
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458 ····]],458 ····]],
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470 ········['../group__module__commandline.xhtml#gaeeff60cfe846f34b5f2c29d786bf125c',·1,·'opt2bSet(const·char·*opt,·int·nfile,·const·t_filenm·fnm[]):&#160;filenm.cpp']470 ········['../group__module__commandline.xhtml#gaeeff60cfe846f34b5f2c29d786bf125c',·1,·'opt2bSet(const·char·*opt,·int·nfile,·const·t_filenm·fnm[]):&#160;filenm.cpp']
471 ····]],471 ····]],
472 ····['opt2file_141',·['opt2FILE',·['../group__module__commandline.xhtml#gab26cf759c91577b19db7e87b2922d1b9',·1,·'filenm.h']]],472 ····['opt2file_141',·['opt2FILE',·['../group__module__commandline.xhtml#gab26cf759c91577b19db7e87b2922d1b9',·1,·'filenm.h']]],
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501 ········['../group__module__commandline.xhtml#ga80e94dc67a2b2b515f6bce576875e7e9',·1,·'opt2parg_str(const·char·*option,·int·nparg,·t_pargs·pa[]):&#160;pargs.cpp']501 ········['../group__module__commandline.xhtml#ga80e94dc67a2b2b515f6bce576875e7e9',·1,·'opt2parg_str(const·char·*option,·int·nparg,·t_pargs·pa[]):&#160;pargs.cpp']
502 ····]],502 ····]],
503 ····['opt2path_5foptional_152',·['opt2path_optional',·['../group__module__commandline.xhtml#ga47f278a4dee5951644434ceab8ef7092',·1,·'opt2path_optional(const·char·*opt,·int·nfile,·const·t_filenm·fnm[]):&#160;filenm.cpp'],503 ····['opt2path_5foptional_152',·['opt2path_optional',·['../group__module__commandline.xhtml#ga47f278a4dee5951644434ceab8ef7092',·1,·'opt2path_optional(const·char·*opt,·int·nfile,·const·t_filenm·fnm[]):&#160;filenm.cpp'],
504 ········['../group__module__commandline.xhtml#ga47f278a4dee5951644434ceab8ef7092',·1,·'opt2path_optional(const·char·*opt,·int·nfile,·const·t_filenm·fnm[]):&#160;filenm.cpp']504 ········['../group__module__commandline.xhtml#ga47f278a4dee5951644434ceab8ef7092',·1,·'opt2path_optional(const·char·*opt,·int·nfile,·const·t_filenm·fnm[]):&#160;filenm.cpp']
505 ····]],505 ····]],
506 ····['optimisationresult_153',·['OptimisationResult',·['../structgmx_1_1OptimisationResult.xhtml',·1,·'gmx']]],506 ····['optimisationresult_153',·['OptimisationResult',·['../structgmx_1_1OptimisationResult.xhtml',·1,·'gmx']]],
507 ····['optimization_2ecpp_154',·['optimization.cpp',·['../tests_2optimization_8cpp.xhtml',·1,·'(Global·Namespace)'],507 ····['optimization_2ecpp_154',·['optimization.cpp',·['../optimization_8cpp.xhtml',·1,·'(Global·Namespace)'],
508 ········['../optimization_8cpp.xhtml',·1,·'(Global·Namespace)']508 ········['../tests_2optimization_8cpp.xhtml',·1,·'(Global·Namespace)']
509 ····]],509 ····]],
510 ····['optimization_2eh_155',·['optimization.h',·['../optimization_8h.xhtml',·1,·'']]],510 ····['optimization_2eh_155',·['optimization.h',·['../optimization_8h.xhtml',·1,·'']]],
511 ····['optimize_5farithmetic_5fexpressions_156',·['optimize_arithmetic_expressions',·['../compiler_8cpp.xhtml#aa22e901f96e3edaa72c2e222ed75bd01',·1,·'compiler.cpp']]],511 ····['optimize_5farithmetic_5fexpressions_156',·['optimize_arithmetic_expressions',·['../compiler_8cpp.xhtml#aa22e901f96e3edaa72c2e222ed75bd01',·1,·'compiler.cpp']]],
512 ····['optimize_5fboolean_5fexpressions_157',·['optimize_boolean_expressions',·['../compiler_8cpp.xhtml#aaf983339164e05e4e7319e88683ca6d6',·1,·'compiler.cpp']]],512 ····['optimize_5fboolean_5fexpressions_157',·['optimize_boolean_expressions',·['../compiler_8cpp.xhtml#aaf983339164e05e4e7319e88683ca6d6',·1,·'compiler.cpp']]],
513 ····['optimize_5fsurface_5fpoints_158',·['optimize_surface_points',·['../sm__insolidangle_8cpp.xhtml#aadef1b206fd479d83a526a388faa275e',·1,·'sm_insolidangle.cpp']]],513 ····['optimize_5fsurface_5fpoints_158',·['optimize_surface_points',·['../sm__insolidangle_8cpp.xhtml#aadef1b206fd479d83a526a388faa275e',·1,·'sm_insolidangle.cpp']]],
514 ····['optimizeddcells_159',·['optimizeDDCells',·['../domdec__setup_8cpp.xhtml#a0116fb195a0ff21854f683c3d8676b5a',·1,·'domdec_setup.cpp']]],514 ····['optimizeddcells_159',·['optimizeDDCells',·['../domdec__setup_8cpp.xhtml#a0116fb195a0ff21854f683c3d8676b5a',·1,·'domdec_setup.cpp']]],
 515 ····['option_160',·['option',·['../classgmx_1_1OptionInfo.xhtml#adc99ae3c6896ed469ae9a4aff7423cd9',·1,·'gmx::OptionInfo::option()'],
515 ····['option_160',·['option',·['../structt__pargs.xhtml#a11d53770ae18dbb0a0320c925b4ebc35',·1,·'t_pargs::option'],516 ········['../structt__pargs.xhtml#a11d53770ae18dbb0a0320c925b4ebc35',·1,·'t_pargs::option'],
516 ········['../classgmx_1_1OptionInfo.xhtml#a1ec4a05fce3bfa125c320dd8e0cfc604',·1,·'gmx::OptionInfo::option()'],517 ········['../classgmx_1_1OptionInfo.xhtml#a1ec4a05fce3bfa125c320dd8e0cfc604',·1,·'gmx::OptionInfo::option()']
517 ········['../classgmx_1_1OptionInfo.xhtml#adc99ae3c6896ed469ae9a4aff7423cd9',·1,·'gmx::OptionInfo::option()·const'] 
518 ····]],518 ····]],
519 ····['option_20module_20parameters_161',·['Storing·non-mdp·option·module·parameters',·['../page_mdmodules.xhtml#autotoc_md7',·1,·'']]],519 ····['option_20module_20parameters_161',·['Storing·non-mdp·option·module·parameters',·['../page_mdmodules.xhtml#autotoc_md7',·1,·'']]],
520 ····['option_2ecpp_162',·['option.cpp',·['../option_8cpp.xhtml',·1,·'']]],520 ····['option_2ecpp_162',·['option.cpp',·['../option_8cpp.xhtml',·1,·'']]],
521 ····['optionfiletype_163',·['OptionFileType',·['../group__module__options.xhtml#ga322a6d38e527f46b273c08583a31665d',·1,·'gmx']]],521 ····['optionfiletype_163',·['OptionFileType',·['../group__module__options.xhtml#ga322a6d38e527f46b273c08583a31665d',·1,·'gmx']]],
522 ····['optionfiletype_2eh_164',·['optionfiletype.h',·['../optionfiletype_8h.xhtml',·1,·'']]],522 ····['optionfiletype_2eh_164',·['optionfiletype.h',·['../optionfiletype_8h.xhtml',·1,·'']]],
523 ····['optionflag_165',·['OptionFlag',·['../namespacegmx.xhtml#ad86fc7354045be1e1456c019b8f97c25',·1,·'gmx']]],523 ····['optionflag_165',·['OptionFlag',·['../namespacegmx.xhtml#ad86fc7354045be1e1456c019b8f97c25',·1,·'gmx']]],
524 ····['optionflags_166',·['OptionFlags',·['../namespacegmx.xhtml#a0b60cc84dcdf372e00a5084712630993',·1,·'gmx']]],524 ····['optionflags_166',·['OptionFlags',·['../namespacegmx.xhtml#a0b60cc84dcdf372e00a5084712630993',·1,·'gmx']]],
525 ····['optionflags_2eh_167',·['optionflags.h',·['../optionflags_8h.xhtml',·1,·'']]],525 ····['optionflags_2eh_167',·['optionflags.h',·['../optionflags_8h.xhtml',·1,·'']]],
526 ····['optioninfo_168',·['optioninfo',·['../classgmx_1_1test_1_1anonymous__namespace_02abstractoptionstorage_8cpp_03_1_1MockOptionStorage.xhtml#a7d87e123198297afec33a2f9e047afea',·1,·'gmx::test::anonymous_namespace{abstractoptionstorage.cpp}::MockOptionStorage::optionInfo()'],526 ····['optioninfo_168',·['optioninfo',·['../classgmx_1_1FileNameOptionStorage.xhtml#ac565fab34f14163b1e8591c73b13179b',·1,·'gmx::FileNameOptionStorage::optionInfo()'],
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527 ········['../classgmx_1_1SelectionOptionStorage.xhtml#a92005e65992f933cee89ac8e73364c26',·1,·'gmx::SelectionOptionStorage::optionInfo()'],530 ········['../classgmx_1_1SelectionOptionStorage.xhtml#a92005e65992f933cee89ac8e73364c26',·1,·'gmx::SelectionOptionStorage::optionInfo()'],
528 ········['../classgmx_1_1SelectionFileOptionStorage.xhtml#ae7e23ab9895809f8529112419a0d6868',·1,·'gmx::SelectionFileOptionStorage::optionInfo()'],531 ········['../classgmx_1_1SelectionFileOptionStorage.xhtml#ae7e23ab9895809f8529112419a0d6868',·1,·'gmx::SelectionFileOptionStorage::optionInfo()'],
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529 ········['../classgmx_1_1FileNameOptionStorage.xhtml#ac565fab34f14163b1e8591c73b13179b',·1,·'gmx::FileNameOptionStorage::optionInfo()'], 
530 ········['../classgmx_1_1EnumOptionStorage.xhtml#adbdf1a9b814e0e4ce1d33726c51c3527',·1,·'gmx::EnumOptionStorage::optionInfo()'], 
531 ········['../classgmx_1_1StringOptionStorage.xhtml#adfec3df516810853d338d2a19f3082cb',·1,·'gmx::StringOptionStorage::optionInfo()'], 
532 ········['../classgmx_1_1FloatOptionStorage.xhtml#a22c2a72cd49b6566794868f635f363fb',·1,·'gmx::FloatOptionStorage::optionInfo()'], 
533 ········['../classgmx_1_1Int64OptionStorage.xhtml#a3b575c5b59217bd0f94ff8a44aa1c9b5',·1,·'gmx::Int64OptionStorage::optionInfo()'],533 ········['../classgmx_1_1Int64OptionStorage.xhtml#a3b575c5b59217bd0f94ff8a44aa1c9b5',·1,·'gmx::Int64OptionStorage::optionInfo()'],
534 ········['../classgmx_1_1OptionInfo.xhtml',·1,·'gmx::OptionInfo'],534 ········['../classgmx_1_1OptionInfo.xhtml',·1,·'gmx::OptionInfo'],
535 ········['../classgmx_1_1OptionInfo.xhtml#a28702d9e5916402f81fe48c541a260bc',·1,·'gmx::OptionInfo::OptionInfo()'],535 ········['../classgmx_1_1OptionInfo.xhtml#a28702d9e5916402f81fe48c541a260bc',·1,·'gmx::OptionInfo::OptionInfo()'],
536 ········['../classgmx_1_1AbstractOptionStorage.xhtml#a14a9360077f79b7c0f768260fa807796',·1,·'gmx::AbstractOptionStorage::optionInfo()'],536 ········['../classgmx_1_1AbstractOptionStorage.xhtml#a14a9360077f79b7c0f768260fa807796',·1,·'gmx::AbstractOptionStorage::optionInfo()'],
537 ········['../classgmx_1_1DoubleOptionStorage.xhtml#a6a468029afea3a69795399893e9c9e61',·1,·'gmx::DoubleOptionStorage::optionInfo()'],537 ········['../classgmx_1_1BooleanOptionStorage.xhtml#a6dcd9cecae230e1d8f9551d329fb6fbc',·1,·'gmx::BooleanOptionStorage::optionInfo()'],
538 ········['../classgmx_1_1IntegerOptionStorage.xhtml#a51929f25babbe05a1b8829acd081702a',·1,·'gmx::IntegerOptionStorage::optionInfo()'],538 ········['../classgmx_1_1IntegerOptionStorage.xhtml#a51929f25babbe05a1b8829acd081702a',·1,·'gmx::IntegerOptionStorage::optionInfo()'],
539 ········['../classgmx_1_1BooleanOptionStorage.xhtml#a6dcd9cecae230e1d8f9551d329fb6fbc',·1,·'gmx::BooleanOptionStorage::optionInfo()']539 ········['../classgmx_1_1DoubleOptionStorage.xhtml#a6a468029afea3a69795399893e9c9e61',·1,·'gmx::DoubleOptionStorage::optionInfo()']
540 ····]],540 ····]],
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541 ····['optionlist_169',·['optionlist',·['../classgmx_1_1internal_1_1OptionSectionImpl_1_1Group.xhtml#abd2f04d3b754c9be06639ee28a16e0e7',·1,·'gmx::internal::OptionSectionImpl::Group::OptionList'],542 ········['../classgmx_1_1internal_1_1OptionSectionImpl_1_1Group.xhtml#abd2f04d3b754c9be06639ee28a16e0e7',·1,·'gmx::internal::OptionSectionImpl::Group::OptionList']
542 ········['../classgmx_1_1SelectionOptionManager_1_1Impl.xhtml#a9bcab8534a29f710047bfcccba220da1',·1,·'gmx::SelectionOptionManager::Impl::OptionList'] 
543 ····]],543 ····]],
544 ····['optionmanagercontainer_170',·['OptionManagerContainer',·['../classgmx_1_1OptionManagerContainer.xhtml',·1,·'gmx']]],544 ····['optionmanagercontainer_170',·['OptionManagerContainer',·['../classgmx_1_1OptionManagerContainer.xhtml',·1,·'gmx']]],
545 ····['optionmanagercontainer_2eh_171',·['optionmanagercontainer.h',·['../optionmanagercontainer_8h.xhtml',·1,·'']]],545 ····['optionmanagercontainer_2eh_171',·['optionmanagercontainer.h',·['../optionmanagercontainer_8h.xhtml',·1,·'']]],
546 ····['optionmap_172',·['OptionMap',·['../classgmx_1_1internal_1_1OptionSectionImpl.xhtml#aa8de9d9b14647ede508a45dfb7ebbd22',·1,·'gmx::internal::OptionSectionImpl']]],546 ····['optionmap_172',·['OptionMap',·['../classgmx_1_1internal_1_1OptionSectionImpl.xhtml#aa8de9d9b14647ede508a45dfb7ebbd22',·1,·'gmx::internal::OptionSectionImpl']]],
547 ····['optionmap_5f_173',·['optionMap_',·['../classgmx_1_1internal_1_1OptionSectionImpl.xhtml#aec29c46247eccc69f7ffa3f5c9cebed4',·1,·'gmx::internal::OptionSectionImpl']]],547 ····['optionmap_5f_173',·['optionMap_',·['../classgmx_1_1internal_1_1OptionSectionImpl.xhtml#aec29c46247eccc69f7ffa3f5c9cebed4',·1,·'gmx::internal::OptionSectionImpl']]],
548 ····['options_174',·['options',·['../page_energyanalysisframework.xhtml#section_energyanalysisframework_options',·1,·'Input·options'],548 ····['options_174',·['options',·['../page_trajectoryanalysisframework.xhtml#section_trajectoryanalysisframework_options',·1,·'Input·options'],
 549 ········['../page_energyanalysisframework.xhtml#section_energyanalysisframework_options',·1,·'Input·options'],
549 ········['../page_analysistemplate.xhtml#autotoc_md83',·1,·'Input·options'],550 ········['../page_analysistemplate.xhtml#autotoc_md83',·1,·'Input·options'],
550 ········['../page_trajectoryanalysisframework.xhtml#section_trajectoryanalysisframework_options',·1,·'Input·options'], 
551 ········['../classgmx_1_1Options.xhtml#a488515445eb8fd101a43b1903e64bdbf',·1,·'gmx::Options::Options()'],551 ········['../classgmx_1_1Options.xhtml#a488515445eb8fd101a43b1903e64bdbf',·1,·'gmx::Options::Options()'],
552 ········['../classgmx_1_1CommandLineCommonOptionsHolder.xhtml#af6fe6e0a4bd11c13b7f64e60dfe59c2b',·1,·'gmx::CommandLineCommonOptionsHolder::options()'], 
553 ········['../classgmx_1_1Options.xhtml',·1,·'gmx::Options'],552 ········['../classgmx_1_1Options.xhtml',·1,·'gmx::Options'],
 553 ········['../classgmx_1_1CommandLineCommonOptionsHolder.xhtml#af6fe6e0a4bd11c13b7f64e60dfe59c2b',·1,·'gmx::CommandLineCommonOptionsHolder::options()'],
554 ········['../classgmx__reverse__top__t.xhtml#a1784e4b777f6805ec9e792f04fa2b78a',·1,·'gmx_reverse_top_t::options()']554 ········['../classgmx__reverse__top__t.xhtml#a1784e4b777f6805ec9e792f04fa2b78a',·1,·'gmx_reverse_top_t::options()']
555 ····]],555 ····]],
556 ····['options_20options_175',·['Extensible·Handling·of·Options·(options)',·['../group__module__options.xhtml',·1,·'']]],556 ····['options_20options_175',·['Extensible·Handling·of·Options·(options)',·['../group__module__options.xhtml',·1,·'']]],
557 ····['options_2ecpp_176',·['options.cpp',·['../options_8cpp.xhtml',·1,·'']]],557 ····['options_2ecpp_176',·['options.cpp',·['../options_8cpp.xhtml',·1,·'']]],
558 ····['options_2eh_177',·['options.h',·['../src_2gromacs_2domdec_2options_8h.xhtml',·1,·'(Global·Namespace)'],558 ····['options_2eh_177',·['options.h',·['../src_2gromacs_2domdec_2options_8h.xhtml',·1,·'(Global·Namespace)'],
559 ········['../api_2legacy_2include_2gromacs_2options_2options_8h.xhtml',·1,·'(Global·Namespace)']559 ········['../api_2legacy_2include_2gromacs_2options_2options_8h.xhtml',·1,·'(Global·Namespace)']
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563 ········['../classgmx_1_1DomainDecompositionBuilder_1_1Impl.xhtml#a461bcb33bd4d0aed73b9a02f46963ba4',·1,·'gmx::DomainDecompositionBuilder::Impl::options_'],563 ········['../classgmx_1_1DomainDecompositionBuilder_1_1Impl.xhtml#a461bcb33bd4d0aed73b9a02f46963ba4',·1,·'gmx::DomainDecompositionBuilder::Impl::options_'],
564 ········['../classgmx_1_1internal_1_1OptionSectionImpl_1_1Group.xhtml#aa0b581c60a66865d20e59c0b7734729c',·1,·'gmx::internal::OptionSectionImpl::Group::options_'],564 ········['../classgmx_1_1internal_1_1OptionSectionImpl_1_1Group.xhtml#aa0b581c60a66865d20e59c0b7734729c',·1,·'gmx::internal::OptionSectionImpl::Group::options_'],
565 ········['../classgmx_1_1OptionsAssigner_1_1Impl.xhtml#a292a0c6cfed7148f01a99b95d8f8d7f4',·1,·'gmx::OptionsAssigner::Impl::options_'],565 ········['../classgmx_1_1OptionsAssigner_1_1Impl.xhtml#a292a0c6cfed7148f01a99b95d8f8d7f4',·1,·'gmx::OptionsAssigner::Impl::options_'],
566 ········['../classgmx_1_1SelectionOptionManager_1_1Impl.xhtml#a82e46f05bb9b7b80b013b6c614089228',·1,·'gmx::SelectionOptionManager::Impl::options_']566 ········['../classgmx_1_1SelectionOptionManager_1_1Impl.xhtml#a82e46f05bb9b7b80b013b6c614089228',·1,·'gmx::SelectionOptionManager::Impl::options_']
567 ····]],567 ····]],
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569 ····['optionsadapter_180',·['optionsadapter',·['../classgmx_1_1anonymous__namespace_02pargs_8cpp_03_1_1OptionsAdapter.xhtml',·1,·'gmx::anonymous_namespace{pargs.cpp}::OptionsAdapter'], 
570 ········['../classgmx_1_1anonymous__namespace_02pargs_8cpp_03_1_1OptionsAdapter.xhtml#a1f9a304d7b9fb1e0ecf1e1241be78a04',·1,·'gmx::anonymous_namespace{pargs.cpp}::OptionsAdapter::OptionsAdapter()']569 ····['optionsadapter_180',·['optionsadapter',·['../classgmx_1_1anonymous__namespace_02pargs_8cpp_03_1_1OptionsAdapter.xhtml#a1f9a304d7b9fb1e0ecf1e1241be78a04',·1,·'gmx::anonymous_namespace{pargs.cpp}::OptionsAdapter::OptionsAdapter()'],
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571 ····]],571 ····]],
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573 ········['../classgmx_1_1Options.xhtml#a597cdff9412b378552b0419beb08fb2f',·1,·'gmx::Options::OptionsAssigner'],572 ····['optionsassigner_181',·['optionsassigner',·['../classgmx_1_1Options.xhtml#a597cdff9412b378552b0419beb08fb2f',·1,·'gmx::Options::OptionsAssigner'],
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27 ····['paddedhostvector_17',·['paddedhostvector',·['../namespacegmx.xhtml#a5ec47a61b30ffcc249cc27ae5ea47da8',·1,·'gmx::PaddedHostVector'],27 ····['paddedhostvector_17',·['paddedhostvector',·['../namespacegmx.xhtml#a5ec47a61b30ffcc249cc27ae5ea47da8',·1,·'gmx::PaddedHostVector'],
28 ········['../state_8h.xhtml#ac8c51716c19f5f58463e856c19b39acb',·1,·'PaddedHostVector:&#160;state.h']28 ········['../state_8h.xhtml#ac8c51716c19f5f58463e856c19b39acb',·1,·'PaddedHostVector:&#160;state.h']
29 ····]],29 ····]],
30 ····['paddednumatomsincolumn_18',·['paddedNumAtomsInColumn',·['../classgmx_1_1Grid.xhtml#a637b80833171b976e901a62e23fb80a2',·1,·'gmx::Grid']]],30 ····['paddednumatomsincolumn_18',·['paddedNumAtomsInColumn',·['../classgmx_1_1Grid.xhtml#a637b80833171b976e901a62e23fb80a2',·1,·'gmx::Grid']]],
31 ····['paddedsize_19',·['paddedSize',·['../classgmx_1_1PaddedVector.xhtml#aa3d1b552af6106d1bb61426b4605add3',·1,·'gmx::PaddedVector']]],31 ····['paddedsize_19',·['paddedSize',·['../classgmx_1_1PaddedVector.xhtml#aa3d1b552af6106d1bb61426b4605add3',·1,·'gmx::PaddedVector']]],
32 ····['paddedvector_20',·['paddedvector',·['../classgmx_1_1PaddedVector.xhtml#ac090f26229cc0e5ca4cf4f70d500dd9e',·1,·'gmx::PaddedVector::PaddedVector(size_type·count,·value_type·const·&amp;v,·const·allocator_type·&amp;allocator=Allocator())'],32 ····['paddedvector_20',·['paddedvector',·['../classgmx_1_1PaddedVector.xhtml#ac090f26229cc0e5ca4cf4f70d500dd9e',·1,·'gmx::PaddedVector::PaddedVector(size_type·count,·value_type·const·&amp;v,·const·allocator_type·&amp;allocator=Allocator())'],
 33 ········['../classgmx_1_1PaddedVector.xhtml#a8a5f5975b2207677f1e956060b02c1d2',·1,·'gmx::PaddedVector::PaddedVector(allocator_type·const·&amp;allocator)'],
33 ········['../classgmx_1_1PaddedVector.xhtml#aae517037a7e2a04806a72deffe661437',·1,·'gmx::PaddedVector::PaddedVector(std::initializer_list&lt;·value_type·&gt;·const·&amp;il)'],34 ········['../classgmx_1_1PaddedVector.xhtml#aae517037a7e2a04806a72deffe661437',·1,·'gmx::PaddedVector::PaddedVector(std::initializer_list&lt;·value_type·&gt;·const·&amp;il)'],
34 ········['../classgmx_1_1PaddedVector.xhtml#af634e58ae15af112df64a6e9f42a5460',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·&amp;&amp;o,·const·Allocator·&amp;alloc)·noexcept'],35 ········['../classgmx_1_1PaddedVector.xhtml#af634e58ae15af112df64a6e9f42a5460',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·&amp;&amp;o,·const·Allocator·&amp;alloc)·noexcept'],
35 ········['../classgmx_1_1PaddedVector.xhtml#a99f036b6e7ea821ab24604474748c8f6',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·&amp;&amp;o)·noexcept'], 
36 ········['../classgmx_1_1PaddedVector.xhtml#ae8d292225db685d912d5be8f26d32d2d',·1,·'gmx::PaddedVector::PaddedVector(size_type·count,·const·allocator_type·&amp;allocator=Allocator())'],36 ········['../classgmx_1_1PaddedVector.xhtml#ae8d292225db685d912d5be8f26d32d2d',·1,·'gmx::PaddedVector::PaddedVector(size_type·count,·const·allocator_type·&amp;allocator=Allocator())'],
37 ········['../classgmx_1_1PaddedVector.xhtml#a8a5f5975b2207677f1e956060b02c1d2',·1,·'gmx::PaddedVector::PaddedVector(allocator_type·const·&amp;allocator)'], 
38 ········['../classgmx_1_1PaddedVector.xhtml#a1455b09f0cb0dd2b5f6ff5b092ecea08',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·const·&amp;o)'],37 ········['../classgmx_1_1PaddedVector.xhtml#a1455b09f0cb0dd2b5f6ff5b092ecea08',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·const·&amp;o)'],
 38 ········['../classgmx_1_1PaddedVector.xhtml#a99f036b6e7ea821ab24604474748c8f6',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·&amp;&amp;o)·noexcept'],
39 ········['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx::PaddedVector&lt;·T,·Allocator·&gt;']39 ········['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx::PaddedVector&lt;·T,·Allocator·&gt;']
40 ····]],40 ····]],
41 ····['paddedvector_2ecpp_21',·['paddedvector.cpp',·['../paddedvector_8cpp.xhtml',·1,·'']]],41 ····['paddedvector_2ecpp_21',·['paddedvector.cpp',·['../paddedvector_8cpp.xhtml',·1,·'']]],
42 ····['paddedvector_2eh_22',·['paddedvector.h',·['../paddedvector_8h.xhtml',·1,·'']]],42 ····['paddedvector_2eh_22',·['paddedvector.h',·['../paddedvector_8h.xhtml',·1,·'']]],
43 ····['paddedvector_3c_20gmx_3a_3abasicvector_20_3e_23',·['PaddedVector&lt;·gmx::BasicVector·&gt;',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]],43 ····['paddedvector_3c_20gmx_3a_3abasicvector_20_3e_23',·['PaddedVector&lt;·gmx::BasicVector·&gt;',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]],
44 ····['paddedvector_3c_20real_20_3e_24',·['PaddedVector&lt;·real·&gt;',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]],44 ····['paddedvector_3c_20real_20_3e_24',·['PaddedVector&lt;·real·&gt;',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]],
45 ····['paddedvector_3c_20rvec_20_3e_25',·['PaddedVector&lt;·RVec·&gt;',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]],45 ····['paddedvector_3c_20rvec_20_3e_25',·['PaddedVector&lt;·RVec·&gt;',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]],
46 ····['paddedvectortest_26',·['PaddedVectorTest',·['../classgmx_1_1test_1_1PaddedVectorTest.xhtml',·1,·'gmx::test']]],46 ····['paddedvectortest_26',·['PaddedVectorTest',·['../classgmx_1_1test_1_1PaddedVectorTest.xhtml',·1,·'gmx::test']]],
47 ····['padding_27',·['padding',·['../structgmx_1_1BoundingBox_1_1Corner.xhtml#a74a1c9cb3020fc75e8a7afe9c7047d7b',·1,·'gmx::BoundingBox::Corner']]],47 ····['padding_27',·['padding',·['../structgmx_1_1BoundingBox_1_1Corner.xhtml#a74a1c9cb3020fc75e8a7afe9c7047d7b',·1,·'gmx::BoundingBox::Corner']]],
48 ····['paddingtraits_28',·['PaddingTraits',·['../structgmx_1_1detail_1_1PaddingTraits.xhtml',·1,·'gmx::detail']]],48 ····['paddingtraits_28',·['PaddingTraits',·['../structgmx_1_1detail_1_1PaddingTraits.xhtml',·1,·'gmx::detail']]],
49 ····['pagealignedallocationpolicy_29',·['PageAlignedAllocationPolicy',·['../classgmx_1_1PageAlignedAllocationPolicy.xhtml',·1,·'gmx']]],49 ····['pagealignedallocationpolicy_29',·['PageAlignedAllocationPolicy',·['../classgmx_1_1PageAlignedAllocationPolicy.xhtml',·1,·'gmx']]],
50 ····['pagealignedallocator_30',·['PageAlignedAllocator',·['../namespacegmx.xhtml#af01c69345463ebb433d1fedfd356b74a',·1,·'gmx']]],50 ····['pagealignedallocator_30',·['PageAlignedAllocator',·['../namespacegmx.xhtml#af01c69345463ebb433d1fedfd356b74a',·1,·'gmx']]],
51 ····['pagesize_31',·['pageSize',·['../namespacegmx.xhtml#a41f63c30185ee31c10a30e46b7d53f9d',·1,·'gmx']]],51 ····['pagesize_31',·['pageSize',·['../namespacegmx.xhtml#a41f63c30185ee31c10a30e46b7d53f9d',·1,·'gmx']]],
52 ····['pair_32',·['pair',·['../namespacegmx.xhtml#ad4174b02d2bfb10e8538d4844ecc6f81ad0bd662806a73209a1c6fbe55591fbff',·1,·'gmx::Pair'], 
53 ········['../structgmx_1_1anonymous__namespace_02domainpaircomm_8cpp_03_1_1DistancesSquared.xhtml#af1e781c15cbc8b00f520c621ef583b1a',·1,·'gmx::anonymous_namespace{domainpaircomm.cpp}::DistancesSquared::pair'],52 ····['pair_32',·['pair',·['../structgmx_1_1anonymous__namespace_02domainpaircomm_8cpp_03_1_1DistancesSquared.xhtml#af1e781c15cbc8b00f520c621ef583b1a',·1,·'gmx::anonymous_namespace{domainpaircomm.cpp}::DistancesSquared::pair'],
54 ········['../structgmx_1_1nbnxn__excl__t.xhtml#a6a392653c71a1a8e133e2855d5cab556',·1,·'gmx::nbnxn_excl_t::pair']53 ········['../structgmx_1_1nbnxn__excl__t.xhtml#a6a392653c71a1a8e133e2855d5cab556',·1,·'gmx::nbnxn_excl_t::pair'],
 54 ········['../namespacegmx.xhtml#ad4174b02d2bfb10e8538d4844ecc6f81ad0bd662806a73209a1c6fbe55591fbff',·1,·'gmx::Pair']
55 ····]],55 ····]],
56 ····['pair_20interactions_33',·['Non-bonded·pair·interactions',·['../group__module__nbnxm.xhtml',·1,·'']]],56 ····['pair_20interactions_33',·['Non-bonded·pair·interactions',·['../group__module__nbnxm.xhtml',·1,·'']]],
57 ····['paircountwithincutoff_34',·['pairCountWithinCutoff',·['../namespacegmx.xhtml#a246c6fa4555b021df975ad1b7f7697c2',·1,·'gmx']]],57 ····['paircountwithincutoff_34',·['pairCountWithinCutoff',·['../namespacegmx.xhtml#a246c6fa4555b021df975ad1b7f7697c2',·1,·'gmx']]],
58 ····['pairdist_2ecpp_35',·['pairdist.cpp',·['../tests_2pairdist_8cpp.xhtml',·1,·'(Global·Namespace)'],58 ····['pairdist_2ecpp_35',·['pairdist.cpp',·['../modules_2pairdist_8cpp.xhtml',·1,·'(Global·Namespace)'],
59 ········['../modules_2pairdist_8cpp.xhtml',·1,·'(Global·Namespace)']59 ········['../tests_2pairdist_8cpp.xhtml',·1,·'(Global·Namespace)']
60 ····]],60 ····]],
61 ····['pairdist_2eh_36',·['pairdist.h',·['../pairdist_8h.xhtml',·1,·'']]],61 ····['pairdist_2eh_36',·['pairdist.h',·['../pairdist_8h.xhtml',·1,·'']]],
62 ····['pairdistance_37',·['PairDistance',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02pairdist_8cpp_03_1_1PairDistance.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{pairdist.cpp}']]],62 ····['pairdistance_37',·['PairDistance',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02pairdist_8cpp_03_1_1PairDistance.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{pairdist.cpp}']]],
63 ····['pairdistancemoduledata_38',·['pairdistancemoduledata',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02pairdist_8cpp_03_1_1PairDistanceModuleData.xhtml#aee31955e41d398a1738d90c17b9448d7',·1,·'gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData::PairDistanceModuleData()'],63 ····['pairdistancemoduledata_38',·['pairdistancemoduledata',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02pairdist_8cpp_03_1_1PairDistanceModuleData.xhtml#aee31955e41d398a1738d90c17b9448d7',·1,·'gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData::PairDistanceModuleData()'],
64 ········['../classgmx_1_1analysismodules_1_1anonymous__namespace_02pairdist_8cpp_03_1_1PairDistanceModuleData.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData']64 ········['../classgmx_1_1analysismodules_1_1anonymous__namespace_02pairdist_8cpp_03_1_1PairDistanceModuleData.xhtml',·1,·'gmx::analysismodules::anonymous_namespace{pairdist.cpp}::PairDistanceModuleData']
65 ····]],65 ····]],
66 ····['pairdistancemoduletest_39',·['PairDistanceModuleTest',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pairdist_8cpp_03.xhtml#a3af93fde09ff573ac749dad72cae4b39',·1,·'gmx::test::anonymous_namespace{pairdist.cpp}']]],66 ····['pairdistancemoduletest_39',·['PairDistanceModuleTest',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pairdist_8cpp_03.xhtml#a3af93fde09ff573ac749dad72cae4b39',·1,·'gmx::test::anonymous_namespace{pairdist.cpp}']]],
Offset 68, 49 lines modifiedOffset 68, 49 lines modified
68 ····['pairhash_41',·['pairHash',·['../structgmx_1_1pairHash.xhtml',·1,·'gmx']]],68 ····['pairhash_41',·['pairHash',·['../structgmx_1_1pairHash.xhtml',·1,·'gmx']]],
69 ····['pairlist_2ecpp_42',·['pairlist.cpp',·['../tests_2pairlist_8cpp.xhtml',·1,·'']]],69 ····['pairlist_2ecpp_42',·['pairlist.cpp',·['../tests_2pairlist_8cpp.xhtml',·1,·'']]],
70 ····['pairlist_5fimask_2eh_43',·['pairlist_imask.h',·['../pairlist__imask_8h.xhtml',·1,·'']]],70 ····['pairlist_5fimask_2eh_43',·['pairlist_imask.h',·['../pairlist__imask_8h.xhtml',·1,·'']]],
71 ····['pairlist_5fsimd_5fkernel_2ecpp_44',·['pairlist_simd_kernel.cpp',·['../pairlist__simd__kernel_8cpp.xhtml',·1,·'']]],71 ····['pairlist_5fsimd_5fkernel_2ecpp_44',·['pairlist_simd_kernel.cpp',·['../pairlist__simd__kernel_8cpp.xhtml',·1,·'']]],
72 ····['pairlist_5fsimd_5fkernel_2eh_45',·['pairlist_simd_kernel.h',·['../pairlist__simd__kernel_8h.xhtml',·1,·'']]],72 ····['pairlist_5fsimd_5fkernel_2eh_45',·['pairlist_simd_kernel.h',·['../pairlist__simd__kernel_8h.xhtml',·1,·'']]],
73 ····['pairlist_5ftuning_2ecpp_46',·['pairlist_tuning.cpp',·['../pairlist__tuning_8cpp.xhtml',·1,·'']]],73 ····['pairlist_5ftuning_2ecpp_46',·['pairlist_tuning.cpp',·['../pairlist__tuning_8cpp.xhtml',·1,·'']]],
74 ····['pairlist_5ftuning_2eh_47',·['pairlist_tuning.h',·['../pairlist__tuning_8h.xhtml',·1,·'']]],74 ····['pairlist_5ftuning_2eh_47',·['pairlist_tuning.h',·['../pairlist__tuning_8h.xhtml',·1,·'']]],
75 ····['pairlistcutoff_48',·['pairlistcutoff',·['../structgmx_1_1NbnxmKernelBenchOptions.xhtml#a2023ee62d6b1a45f5cc8bce187330699',·1,·'gmx::NbnxmKernelBenchOptions::pairlistCutoff'], 
76 ········['../structgmx_1_1test_1_1anonymous__namespace_02kernel__test_8cpp_03_1_1KernelOptions.xhtml#a99a1005d4246403b05b8dee487944485',·1,·'gmx::test::anonymous_namespace{kernel_test.cpp}::KernelOptions::pairlistCutoff']75 ····['pairlistcutoff_48',·['pairlistcutoff',·['../structgmx_1_1test_1_1anonymous__namespace_02kernel__test_8cpp_03_1_1KernelOptions.xhtml#a99a1005d4246403b05b8dee487944485',·1,·'gmx::test::anonymous_namespace{kernel_test.cpp}::KernelOptions::pairlistCutoff'],
 76 ········['../structgmx_1_1NbnxmKernelBenchOptions.xhtml#a2023ee62d6b1a45f5cc8bce187330699',·1,·'gmx::NbnxmKernelBenchOptions::pairlistCutoff']
77 ····]],77 ····]],
78 ····['pairlistinnerradius_49',·['pairlistInnerRadius',·['../structgmx_1_1nonbonded__verlet__t.xhtml#a51c4a118964f4b5213facfd765f76243',·1,·'gmx::nonbonded_verlet_t']]],78 ····['pairlistinnerradius_49',·['pairlistInnerRadius',·['../structgmx_1_1nonbonded__verlet__t.xhtml#a51c4a118964f4b5213facfd765f76243',·1,·'gmx::nonbonded_verlet_t']]],
79 ····['pairlistissimple_50',·['pairlistIsSimple',·['../structgmx_1_1nonbonded__verlet__t.xhtml#a26c1965627a134ffaf8dc77448ae7f43',·1,·'gmx::nonbonded_verlet_t']]],79 ····['pairlistissimple_50',·['pairlistIsSimple',·['../structgmx_1_1nonbonded__verlet__t.xhtml#a26c1965627a134ffaf8dc77448ae7f43',·1,·'gmx::nonbonded_verlet_t']]],
80 ····['pairlistouterradius_51',·['pairlistOuterRadius',·['../structgmx_1_1nonbonded__verlet__t.xhtml#a6d5f189da301555a408b19e4b782eb15',·1,·'gmx::nonbonded_verlet_t']]],80 ····['pairlistouterradius_51',·['pairlistOuterRadius',·['../structgmx_1_1nonbonded__verlet__t.xhtml#a6d5f189da301555a408b19e4b782eb15',·1,·'gmx::nonbonded_verlet_t']]],
81 ····['pairlistparams_52',·['pairlistparams',·['../structgmx_1_1PairlistParams.xhtml',·1,·'gmx::PairlistParams'], 
82 ········['../structgmx_1_1PairlistParams.xhtml#a5e50f9cb2a367fff511bb6fceb102545',·1,·'gmx::PairlistParams::PairlistParams()']81 ····['pairlistparams_52',·['pairlistparams',·['../structgmx_1_1PairlistParams.xhtml#a5e50f9cb2a367fff511bb6fceb102545',·1,·'gmx::PairlistParams::PairlistParams()'],
 82 ········['../structgmx_1_1PairlistParams.xhtml',·1,·'gmx::PairlistParams']
83 ····]],83 ····]],
84 ····['pairlistparams_2ecpp_53',·['pairlistparams.cpp',·['../pairlistparams_8cpp.xhtml',·1,·'']]],84 ····['pairlistparams_2ecpp_53',·['pairlistparams.cpp',·['../pairlistparams_8cpp.xhtml',·1,·'']]],
85 ····['pairlistparams_2eh_54',·['pairlistparams.h',·['../pairlistparams_8h.xhtml',·1,·'']]],85 ····['pairlistparams_2eh_54',·['pairlistparams.h',·['../pairlistparams_8h.xhtml',·1,·'']]],
 86 ····['pairlistset_55',·['pairlistset',·['../classgmx_1_1PairlistSet.xhtml',·1,·'gmx::PairlistSet'],
86 ····['pairlistset_55',·['pairlistset',·['../classgmx_1_1PairlistSets.xhtml#a0f73ad8dba4b6b59d20f9488611e1efc',·1,·'gmx::PairlistSets::pairlistSet()'],87 ········['../classgmx_1_1PairlistSets.xhtml#a0f73ad8dba4b6b59d20f9488611e1efc',·1,·'gmx::PairlistSets::pairlistSet()'],
87 ········['../classgmx_1_1PairlistSet.xhtml#ae43d2e1d2818c66c47426aa57f40c09b',·1,·'gmx::PairlistSet::PairlistSet()'],88 ········['../classgmx_1_1PairlistSet.xhtml#ae43d2e1d2818c66c47426aa57f40c09b',·1,·'gmx::PairlistSet::PairlistSet()']
88 ········['../classgmx_1_1PairlistSet.xhtml',·1,·'gmx::PairlistSet'] 
89 ····]],89 ····]],
90 ····['pairlistset_2ecpp_56',·['pairlistset.cpp',·['../pairlistset_8cpp.xhtml',·1,·'']]],90 ····['pairlistset_2ecpp_56',·['pairlistset.cpp',·['../pairlistset_8cpp.xhtml',·1,·'']]],
91 ····['pairlistset_2eh_57',·['pairlistset.h',·['../pairlistset_8h.xhtml',·1,·'']]],91 ····['pairlistset_2eh_57',·['pairlistset.h',·['../pairlistset_8h.xhtml',·1,·'']]],
92 ····['pairlistsets_58',·['pairlistsets',·['../classgmx_1_1PairlistSets.xhtml',·1,·'gmx::PairlistSets'], 
93 ········['../structgmx_1_1nonbonded__verlet__t.xhtml#aeb0b1a81cdebaac68841abd89635e084',·1,·'gmx::nonbonded_verlet_t::pairlistSets()'],92 ····['pairlistsets_58',·['pairlistsets',·['../structgmx_1_1nonbonded__verlet__t.xhtml#aeb0b1a81cdebaac68841abd89635e084',·1,·'gmx::nonbonded_verlet_t::pairlistSets()'],
94 ········['../classgmx_1_1PairlistSets.xhtml#a9375364a83138eae955b23cd199fd891',·1,·'gmx::PairlistSets::PairlistSets()']93 ········['../classgmx_1_1PairlistSets.xhtml#a9375364a83138eae955b23cd199fd891',·1,·'gmx::PairlistSets::PairlistSets()'],
 94 ········['../classgmx_1_1PairlistSets.xhtml',·1,·'gmx::PairlistSets']
95 ····]],95 ····]],
96 ····['pairlistsets_2eh_59',·['pairlistsets.h',·['../pairlistsets_8h.xhtml',·1,·'']]],96 ····['pairlistsets_2eh_59',·['pairlistsets.h',·['../pairlistsets_8h.xhtml',·1,·'']]],
97 ····['pairlisttype_60',·['pairlisttype',·['../namespacegmx.xhtml#a988b986d35cacb4d435767ea6c57a0b5',·1,·'gmx::PairlistType'], 
98 ········['../structgmx_1_1PairlistParams.xhtml#a2c83e42e8b3694d16f22bf12c5d9f7e2',·1,·'gmx::PairlistParams::pairlistType']97 ····['pairlisttype_60',·['pairlisttype',·['../structgmx_1_1PairlistParams.xhtml#a2c83e42e8b3694d16f22bf12c5d9f7e2',·1,·'gmx::PairlistParams::pairlistType'],
 98 ········['../namespacegmx.xhtml#a988b986d35cacb4d435767ea6c57a0b5',·1,·'gmx::PairlistType']
99 ····]],99 ····]],
100 ····['pairlisttype_5f_61',·['pairlistType_',·['../structgmx_1_1Grid_1_1Geometry.xhtml#a8ded14d0f33cf006304ac9a707cbef4a',·1,·'gmx::Grid::Geometry']]],100 ····['pairlisttype_5f_61',·['pairlistType_',·['../structgmx_1_1Grid_1_1Geometry.xhtml#a8ded14d0f33cf006304ac9a707cbef4a',·1,·'gmx::Grid::Geometry']]],
101 ····['pairlistwork_2ecpp_62',·['pairlistwork.cpp',·['../pairlistwork_8cpp.xhtml',·1,·'']]],101 ····['pairlistwork_2ecpp_62',·['pairlistwork.cpp',·['../pairlistwork_8cpp.xhtml',·1,·'']]],
102 ····['pairlistwork_2eh_63',·['pairlistwork.h',·['../pairlistwork_8h.xhtml',·1,·'']]],102 ····['pairlistwork_2eh_63',·['pairlistwork.h',·['../pairlistwork_8h.xhtml',·1,·'']]],
103 ····['pairs_64',·['Pairs',·['../classListedForces.xhtml#a73e4fa54dfd332da42036d5ae893da47aa07a589a90362b3346324844a3ad87ff',·1,·'ListedForces']]],103 ····['pairs_64',·['Pairs',·['../classListedForces.xhtml#a73e4fa54dfd332da42036d5ae893da47aa07a589a90362b3346324844a3ad87ff',·1,·'ListedForces']]],
104 ····['pairs_2ecpp_65',·['pairs.cpp',·['../tests_2pairs_8cpp.xhtml',·1,·'(Global·Namespace)'],104 ····['pairs_2ecpp_65',·['pairs.cpp',·['../tests_2pairs_8cpp.xhtml',·1,·'(Global·Namespace)'],
105 ········['../pairs_8cpp.xhtml',·1,·'(Global·Namespace)']105 ········['../pairs_8cpp.xhtml',·1,·'(Global·Namespace)']
106 ····]],106 ····]],
107 ····['pairs_2eh_66',·['pairs.h',·['../pairs_8h.xhtml',·1,·'']]],107 ····['pairs_2eh_66',·['pairs.h',·['../pairs_8h.xhtml',·1,·'']]],
108 ····['pairsearch_67',·['pairsearch',·['../classgmx_1_1PairSearch.xhtml',·1,·'gmx::PairSearch'], 
109 ········['../classgmx_1_1PairSearch.xhtml#ac9f08e8fa6d40c6761e97e8b2839e23e',·1,·'gmx::PairSearch::PairSearch()']108 ····['pairsearch_67',·['pairsearch',·['../classgmx_1_1PairSearch.xhtml#ac9f08e8fa6d40c6761e97e8b2839e23e',·1,·'gmx::PairSearch::PairSearch()'],
 109 ········['../classgmx_1_1PairSearch.xhtml',·1,·'gmx::PairSearch']
110 ····]],110 ····]],
111 ····['pairsearch_2ecpp_68',·['pairsearch.cpp',·['../pairsearch_8cpp.xhtml',·1,·'']]],111 ····['pairsearch_2ecpp_68',·['pairsearch.cpp',·['../pairsearch_8cpp.xhtml',·1,·'']]],
112 ····['pairsearch_2eh_69',·['pairsearch.h',·['../pairsearch_8h.xhtml',·1,·'']]],112 ····['pairsearch_2eh_69',·['pairsearch.h',·['../pairsearch_8h.xhtml',·1,·'']]],
113 ····['pairsearchcoordinates_70',·['pairSearchCoordinates',·['../classanonymous__namespace_02minimize_8cpp_03_1_1EnergyEvaluator.xhtml#af18643a5c0d8729b32e688d45fd7f8ca',·1,·'anonymous_namespace{minimize.cpp}::EnergyEvaluator']]],113 ····['pairsearchcoordinates_70',·['pairSearchCoordinates',·['../classanonymous__namespace_02minimize_8cpp_03_1_1EnergyEvaluator.xhtml#af18643a5c0d8729b32e688d45fd7f8ca',·1,·'anonymous_namespace{minimize.cpp}::EnergyEvaluator']]],
114 ····['pairsearchwork_71',·['PairsearchWork',·['../structgmx_1_1PairsearchWork.xhtml',·1,·'gmx']]],114 ····['pairsearchwork_71',·['PairsearchWork',·['../structgmx_1_1PairsearchWork.xhtml',·1,·'gmx']]],
115 ····['paragraphbreak_72',·['paragraphBreak',·['../classgmx_1_1HelpWriterContext.xhtml#a6c24ca1470b3addda69ae236a6ea66b2',·1,·'gmx::HelpWriterContext']]],115 ····['paragraphbreak_72',·['paragraphBreak',·['../classgmx_1_1HelpWriterContext.xhtml#a6c24ca1470b3addda69ae236a6ea66b2',·1,·'gmx::HelpWriterContext']]],
116 ····['parallel_5f3dfft_5fexecute_5fgpu_5fwrapper_73',·['parallel_3dfft_execute_gpu_wrapper',·['../pme__gpu_8cpp.xhtml#a13b15b5d3a7003ff0dfdba02aadbc97e',·1,·'pme_gpu.cpp']]],116 ····['parallel_5f3dfft_5fexecute_5fgpu_5fwrapper_73',·['parallel_3dfft_execute_gpu_wrapper',·['../pme__gpu_8cpp.xhtml#a13b15b5d3a7003ff0dfdba02aadbc97e',·1,·'pme_gpu.cpp']]],
Offset 128, 33 lines modifiedOffset 128, 33 lines modified
128 ····['parallelization_20over_20mpi_78',·['Spatial·domain·decomposition·(for·parallelization·over·MPI)',·['../group__module__domdec.xhtml',·1,·'']]],128 ····['parallelization_20over_20mpi_78',·['Spatial·domain·decomposition·(for·parallelization·over·MPI)',·['../group__module__domdec.xhtml',·1,·'']]],
129 ····['parallelizationfactor_79',·['parallelizationFactor',·['../classgmx_1_1AnalysisDataParallelOptions.xhtml#ad581353e29513839c7ab04f429f50b61',·1,·'gmx::AnalysisDataParallelOptions']]],129 ····['parallelizationfactor_79',·['parallelizationFactor',·['../classgmx_1_1AnalysisDataParallelOptions.xhtml#ad581353e29513839c7ab04f429f50b61',·1,·'gmx::AnalysisDataParallelOptions']]],
130 ····['paralleloptions_2eh_80',·['paralleloptions.h',·['../paralleloptions_8h.xhtml',·1,·'']]],130 ····['paralleloptions_2eh_80',·['paralleloptions.h',·['../paralleloptions_8h.xhtml',·1,·'']]],
131 ····['parallelselection_81',·['parallelSelection',·['../classgmx_1_1TrajectoryAnalysisModuleData.xhtml#a4e23dbf4cfd2554ac011664b49c1c7e0',·1,·'gmx::TrajectoryAnalysisModuleData']]],131 ····['parallelselection_81',·['parallelSelection',·['../classgmx_1_1TrajectoryAnalysisModuleData.xhtml#a4e23dbf4cfd2554ac011664b49c1c7e0',·1,·'gmx::TrajectoryAnalysisModuleData']]],
132 ····['parallelselections_82',·['parallelSelections',·['../classgmx_1_1TrajectoryAnalysisModuleData.xhtml#a4ffe3dec6ef34ae7e6af7a46b9fc7d0b',·1,·'gmx::TrajectoryAnalysisModuleData']]],132 ····['parallelselections_82',·['parallelSelections',·['../classgmx_1_1TrajectoryAnalysisModuleData.xhtml#a4ffe3dec6ef34ae7e6af7a46b9fc7d0b',·1,·'gmx::TrajectoryAnalysisModuleData']]],
133 ····['param_83',·['param',·['../classgmx_1_1TabulatedNormalDistribution.xhtml#ace6c727298fe514a14a114f41d00e206',·1,·'gmx::TabulatedNormalDistribution::param()'],133 ····['param_83',·['param',·['../classgmx_1_1TabulatedNormalDistribution.xhtml#ace6c727298fe514a14a114f41d00e206',·1,·'gmx::TabulatedNormalDistribution::param()'],
134 ········['../classgmx_1_1UniformRealDistribution.xhtml#a267faab6d4cd2e017603fe0f73500c38',·1,·'gmx::UniformRealDistribution::param()'],134 ········['../classgmx_1_1UniformRealDistribution.xhtml#a267faab6d4cd2e017603fe0f73500c38',·1,·'gmx::UniformRealDistribution::param()'],
 135 ········['../classgmx_1_1UniformIntDistribution.xhtml#a843c35d5997b5075c35125a57cd6b937',·1,·'gmx::UniformIntDistribution::param()'],
135 ········['../classgmx_1_1NormalDistribution.xhtml#adaa8c7d5f4803f33e80d1811aa0af1f8',·1,·'gmx::NormalDistribution::param()'],136 ········['../classgmx_1_1NormalDistribution.xhtml#adaa8c7d5f4803f33e80d1811aa0af1f8',·1,·'gmx::NormalDistribution::param()'],
136 ········['../classgmx_1_1SelectionTreeElement.xhtml#a0b4956164b6ed61094a550099fa90d3b',·1,·'gmx::SelectionTreeElement::param'],137 ········['../classgmx_1_1SelectionTreeElement.xhtml#a0b4956164b6ed61094a550099fa90d3b',·1,·'gmx::SelectionTreeElement::param'],
137 ········['../structgmx__ana__selmethod__t.xhtml#afd48ccc940b2c37d46c65bbeb5fb7ff3',·1,·'gmx_ana_selmethod_t::param'], 
138 ········['../classgmx_1_1ExponentialDistribution.xhtml#ac5071065401d78716721b2d8512b9f75',·1,·'gmx::ExponentialDistribution::param()'], 
139 ········['../classgmx_1_1GammaDistribution.xhtml#a35f0e16a9da71056786953c5095ae334',·1,·'gmx::GammaDistribution::param()'],138 ········['../classgmx_1_1GammaDistribution.xhtml#a35f0e16a9da71056786953c5095ae334',·1,·'gmx::GammaDistribution::param()'],
140 ········['../classgmx_1_1UniformIntDistribution.xhtml#a843c35d5997b5075c35125a57cd6b937',·1,·'gmx::UniformIntDistribution::param()']139 ········['../classgmx_1_1ExponentialDistribution.xhtml#ac5071065401d78716721b2d8512b9f75',·1,·'gmx::ExponentialDistribution::param()'],
 140 ········['../structgmx__ana__selmethod__t.xhtml#afd48ccc940b2c37d46c65bbeb5fb7ff3',·1,·'gmx_ana_selmethod_t::param']
141 ····]],141 ····]],
142 ····['param_5ftype_84',·['param_type',·['../classgmx_1_1GammaDistribution_1_1param__type.xhtml#a945429fd633cd59c2850bf7cd70d88d5',·1,·'gmx::GammaDistribution::param_type::param_type()'], 
143 ········['../classgmx_1_1NormalDistribution_1_1param__type.xhtml#a479bbfe6aea453e1b93fb6c46b2a586a',·1,·'gmx::NormalDistribution::param_type::param_type()'], 
144 ········['../classgmx_1_1TabulatedNormalDistribution_1_1param__type.xhtml#a6aa16740324937c7444c04eb52ed1a2a',·1,·'gmx::TabulatedNormalDistribution::param_type::param_type()'], 
145 ········['../classgmx_1_1UniformIntDistribution_1_1param__type.xhtml#a3c7af41da301591eda86b7f17f68d5e2',·1,·'gmx::UniformIntDistribution::param_type::param_type()'], 
146 ········['../classgmx_1_1UniformRealDistribution_1_1param__type.xhtml#a075c414de6d852b230fcf3090828c0ae',·1,·'gmx::UniformRealDistribution::param_type::param_type()'], 
147 ········['../classgmx_1_1TabulatedNormalDistribution_1_1param__type.xhtml',·1,·'gmx::TabulatedNormalDistribution&lt;·RealType,·tableBits·&gt;::param_type'], 
148 ········['../classgmx_1_1ExponentialDistribution_1_1param__type.xhtml#a9da3288cf64135c00f1d8b4f9886e6bc',·1,·'gmx::ExponentialDistribution::param_type::param_type()'],142 ····['param_5ftype_84',·['param_type',·['../classgmx_1_1ExponentialDistribution_1_1param__type.xhtml#a9da3288cf64135c00f1d8b4f9886e6bc',·1,·'gmx::ExponentialDistribution::param_type::param_type()'],
149 ········['../classgmx_1_1NormalDistribution_1_1param__type.xhtml',·1,·'gmx::NormalDistribution&lt;·RealType·&gt;::param_type'],143 ········['../classgmx_1_1UniformRealDistribution_1_1param__type.xhtml',·1,·'gmx::UniformRealDistribution&lt;·RealType·&gt;::param_type'],
150 ········['../classgmx_1_1UniformIntDistribution_1_1param__type.xhtml',·1,·'gmx::UniformIntDistribution&lt;·IntType·&gt;::param_type'],144 ········['../classgmx_1_1UniformIntDistribution_1_1param__type.xhtml',·1,·'gmx::UniformIntDistribution&lt;·IntType·&gt;::param_type'],
151 ········['../classgmx_1_1GammaDistribution_1_1param__type.xhtml',·1,·'gmx::GammaDistribution&lt;·RealType·&gt;::param_type'], 
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24 ····['qmmm_2eh_14',·['qmmm.h',·['../qmmm_8h.xhtml',·1,·'']]],24 ····['qmmm_2eh_14',·['qmmm.h',·['../qmmm_8h.xhtml',·1,·'']]],
25 ····['qmmmforceprovider_15',·['QMMMForceProvider',·['../classgmx_1_1QMMMForceProvider.xhtml',·1,·'gmx']]],25 ····['qmmmforceprovider_15',·['QMMMForceProvider',·['../classgmx_1_1QMMMForceProvider.xhtml',·1,·'gmx']]],
26 ····['qmmmforceprovider_2ecpp_16',·['qmmmforceprovider.cpp',·['../tests_2qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],26 ····['qmmmforceprovider_2ecpp_16',·['qmmmforceprovider.cpp',·['../tests_2qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],
27 ········['../qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']27 ········['../qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']
28 ····]],28 ····]],
29 ····['qmmmforceprovider_2eh_17',·['qmmmforceprovider.h',·['../qmmmforceprovider_8h.xhtml',·1,·'']]],29 ····['qmmmforceprovider_2eh_17',·['qmmmforceprovider.h',·['../qmmmforceprovider_8h.xhtml',·1,·'']]],
30 ····['qmmmforceprovider_5fstub_2ecpp_18',·['qmmmforceprovider_stub.cpp',·['../qmmmforceprovider__stub_8cpp.xhtml',·1,·'']]],30 ····['qmmmforceprovider_5fstub_2ecpp_18',·['qmmmforceprovider_stub.cpp',·['../qmmmforceprovider__stub_8cpp.xhtml',·1,·'']]],
31 ····['qmmminputgenerator_19',·['qmmminputgenerator',·['../classgmx_1_1QMMMInputGenerator.xhtml',·1,·'gmx::QMMMInputGenerator'], 
32 ········['../classgmx_1_1QMMMInputGenerator.xhtml#aa0847e6ee608ea7444b36c9db6e0bdd6',·1,·'gmx::QMMMInputGenerator::QMMMInputGenerator()']31 ····['qmmminputgenerator_19',·['qmmminputgenerator',·['../classgmx_1_1QMMMInputGenerator.xhtml#aa0847e6ee608ea7444b36c9db6e0bdd6',·1,·'gmx::QMMMInputGenerator::QMMMInputGenerator()'],
 32 ········['../classgmx_1_1QMMMInputGenerator.xhtml',·1,·'gmx::QMMMInputGenerator']
33 ····]],33 ····]],
34 ····['qmmminputgenerator_2ecpp_20',·['qmmminputgenerator.cpp',·['../tests_2qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)'],34 ····['qmmminputgenerator_2ecpp_20',·['qmmminputgenerator.cpp',·['../tests_2qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)'],
35 ········['../qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)']35 ········['../qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)']
36 ····]],36 ····]],
37 ····['qmmminputgenerator_2eh_21',·['qmmminputgenerator.h',·['../qmmminputgenerator_8h.xhtml',·1,·'']]],37 ····['qmmminputgenerator_2eh_21',·['qmmminputgenerator.h',·['../qmmminputgenerator_8h.xhtml',·1,·'']]],
38 ····['qmmmmdptransformfromstring_22',·['QMMMMdpTransformFromString',·['../namespacegmx_1_1anonymous__namespace_02qmmmoptions_8cpp_03.xhtml#a704afcf71de3ae29cf3c3a260c8e8e0c',·1,·'gmx::anonymous_namespace{qmmmoptions.cpp}']]],38 ····['qmmmmdptransformfromstring_22',·['QMMMMdpTransformFromString',·['../namespacegmx_1_1anonymous__namespace_02qmmmoptions_8cpp_03.xhtml#a704afcf71de3ae29cf3c3a260c8e8e0c',·1,·'gmx::anonymous_namespace{qmmmoptions.cpp}']]],
39 ····['qmmmmoduleinfo_23',·['QMMMModuleInfo',·['../structgmx_1_1QMMMModuleInfo.xhtml',·1,·'gmx']]],39 ····['qmmmmoduleinfo_23',·['QMMMModuleInfo',·['../structgmx_1_1QMMMModuleInfo.xhtml',·1,·'gmx']]],
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343 ····]],343 ····]],
344 ····['refids_213',·['refIds',·['../classgmx_1_1Selection.xhtml#a14558d886a11842e39a1f93dfd1db358',·1,·'gmx::Selection']]],344 ····['refids_213',·['refIds',·['../classgmx_1_1Selection.xhtml#a14558d886a11842e39a1f93dfd1db358',·1,·'gmx::Selection']]],
345 ····['refindex_214',·['refIndex',·['../classgmx_1_1AnalysisNeighborhoodPair.xhtml#a713650494eafbd30a66902c2971f16fe',·1,·'gmx::AnalysisNeighborhoodPair']]],345 ····['refindex_214',·['refIndex',·['../classgmx_1_1AnalysisNeighborhoodPair.xhtml#a713650494eafbd30a66902c2971f16fe',·1,·'gmx::AnalysisNeighborhoodPair']]],
346 ····['refpairlist_215',·['RefPairList',·['../namespaceanonymous__namespace_02nbsearch_8cpp_03.xhtml#ac1da2ff320001e88dcc42758f8a3c21e',·1,·'anonymous_namespace{nbsearch.cpp}']]],346 ····['refpairlist_215',·['RefPairList',·['../namespaceanonymous__namespace_02nbsearch_8cpp_03.xhtml#ac1da2ff320001e88dcc42758f8a3c21e',·1,·'anonymous_namespace{nbsearch.cpp}']]],
347 ····['refproj_216',·['refproj',·['../structanonymous__namespace_02edsam_8cpp_03_1_1t__eigvec.xhtml#aa6c9c57d3dff85411b0faa930c3dcc71',·1,·'anonymous_namespace{edsam.cpp}::t_eigvec']]],347 ····['refproj_216',·['refproj',·['../structanonymous__namespace_02edsam_8cpp_03_1_1t__eigvec.xhtml#aa6c9c57d3dff85411b0faa930c3dcc71',·1,·'anonymous_namespace{edsam.cpp}::t_eigvec']]],
348 ····['refreshmassesandcharges_217',·['refreshMassesAndCharges',·['../classgmx_1_1internal_1_1SelectionData.xhtml#ad86105740719b15fd3c97f7badc16b5c',·1,·'gmx::internal::SelectionData']]],348 ····['refreshmassesandcharges_217',·['refreshMassesAndCharges',·['../classgmx_1_1internal_1_1SelectionData.xhtml#ad86105740719b15fd3c97f7badc16b5c',·1,·'gmx::internal::SelectionData']]],
349 ····['refreshname_218',·['refreshName',·['../classgmx_1_1internal_1_1SelectionData.xhtml#aa9b2de19d441e2bbad3f0a3d9a6aa8dd',·1,·'gmx::internal::SelectionData']]],349 ····['refreshname_218',·['refreshName',·['../classgmx_1_1internal_1_1SelectionData.xhtml#aa9b2de19d441e2bbad3f0a3d9a6aa8dd',·1,·'gmx::internal::SelectionData']]],
350 ····['register_2ecpp_219',·['register.cpp',·['../frameconverters_2register_8cpp.xhtml',·1,·'(Global·Namespace)'],350 ····['register_2ecpp_219',·['register.cpp',·['../tests_2register_8cpp.xhtml',·1,·'(Global·Namespace)'],
351 ········['../tests_2register_8cpp.xhtml',·1,·'(Global·Namespace)']351 ········['../frameconverters_2register_8cpp.xhtml',·1,·'(Global·Namespace)']
352 ····]],352 ····]],
353 ····['register_2eh_220',·['register.h',·['../register_8h.xhtml',·1,·'']]],353 ····['register_2eh_220',·['register.h',·['../register_8h.xhtml',·1,·'']]],
354 ····['register_5fexternal_5fpull_5fpotential_221',·['register_external_pull_potential',·['../pull_8h.xhtml#a86dbe05b3e003570d0fa27706bebe5df',·1,·'pull.cpp']]],354 ····['register_5fexternal_5fpull_5fpotential_221',·['register_external_pull_potential',·['../pull_8h.xhtml#a86dbe05b3e003570d0fa27706bebe5df',·1,·'pull.cpp']]],
355 ····['registeranalysisdataset_222',·['registerAnalysisDataset',·['../classgmx_1_1TrajectoryAnalysisModule.xhtml#a86b3b5cd87518e988e8b5452b39a3ad1',·1,·'gmx::TrajectoryAnalysisModule']]],355 ····['registeranalysisdataset_222',·['registerAnalysisDataset',·['../classgmx_1_1TrajectoryAnalysisModule.xhtml#a86b3b5cd87518e988e8b5452b39a3ad1',·1,·'gmx::TrajectoryAnalysisModule']]],
356 ····['registerawhwithpull_223',·['registerAwhWithPull',·['../classgmx_1_1Awh.xhtml#af8957a0084804002508feb702f0e924a',·1,·'gmx::Awh']]],356 ····['registerawhwithpull_223',·['registerAwhWithPull',·['../classgmx_1_1Awh.xhtml#af8957a0084804002508feb702f0e924a',·1,·'gmx::Awh']]],
357 ····['registerbasicdataset_224',·['registerBasicDataset',·['../classgmx_1_1TrajectoryAnalysisModule.xhtml#ad946d2af4c8e284ef349f2cd816495bb',·1,·'gmx::TrajectoryAnalysisModule']]],357 ····['registerbasicdataset_224',·['registerBasicDataset',·['../classgmx_1_1TrajectoryAnalysisModule.xhtml#ad946d2af4c8e284ef349f2cd816495bb',·1,·'gmx::TrajectoryAnalysisModule']]],
358 ····['registerclient_225',·['registerclient',·['../classgmx_1_1CheckpointHelperBuilder.xhtml#a1bdeec36162c0a061c2a2079406795c3',·1,·'gmx::CheckpointHelperBuilder::registerClient()'],358 ····['registerclient_225',·['registerclient',·['../classgmx_1_1CheckpointHelperBuilder.xhtml#a1bdeec36162c0a061c2a2079406795c3',·1,·'gmx::CheckpointHelperBuilder::registerClient()'],
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499 ····['sendcoordinatestopme_324',·['sendCoordinatesToPme',·['../classgmx_1_1PmePpCommGpu_1_1Impl.xhtml#a62f1a1eff1d210698c8c53876905082f',·1,·'gmx::PmePpCommGpu::Impl']]],499 ····['sendcoordinatestopme_324',·['sendCoordinatesToPme',·['../classgmx_1_1PmePpCommGpu_1_1Impl.xhtml#a62f1a1eff1d210698c8c53876905082f',·1,·'gmx::PmePpCommGpu::Impl']]],
500 ····['sendcoordinatestopmefromcpu_325',·['sendCoordinatesToPmeFromCpu',·['../classgmx_1_1PmePpCommGpu.xhtml#aac4a3a7e70b11f1197826e37bb080bca',·1,·'gmx::PmePpCommGpu']]],500 ····['sendcoordinatestopmefromcpu_325',·['sendCoordinatesToPmeFromCpu',·['../classgmx_1_1PmePpCommGpu.xhtml#aac4a3a7e70b11f1197826e37bb080bca',·1,·'gmx::PmePpCommGpu']]],
501 ····['sendcoordinatestopmefromgpu_326',·['sendCoordinatesToPmeFromGpu',·['../classgmx_1_1PmePpCommGpu.xhtml#aca9637ed98e605eb38acfb3f1db3cfc6',·1,·'gmx::PmePpCommGpu']]],501 ····['sendcoordinatestopmefromgpu_326',·['sendCoordinatesToPmeFromGpu',·['../classgmx_1_1PmePpCommGpu.xhtml#aca9637ed98e605eb38acfb3f1db3cfc6',·1,·'gmx::PmePpCommGpu']]],
502 ····['sendenergies_327',·['sendEnergies',·['../classgmx_1_1MimicCommunicator.xhtml#ab9d1443e7599eba59af3e8866a08574e',·1,·'gmx::MimicCommunicator']]],502 ····['sendenergies_327',·['sendEnergies',·['../classgmx_1_1MimicCommunicator.xhtml#ab9d1443e7599eba59af3e8866a08574e',·1,·'gmx::MimicCommunicator']]],
503 ····['sendforces_328',·['sendForces',·['../classgmx_1_1MimicCommunicator.xhtml#a72da9bef1f60506d755bd218846035da',·1,·'gmx::MimicCommunicator']]],503 ····['sendforces_328',·['sendForces',·['../classgmx_1_1MimicCommunicator.xhtml#a72da9bef1f60506d755bd218846035da',·1,·'gmx::MimicCommunicator']]],
504 ····['sendforcesdirecttoppgpu_329',·['sendForcesDirectToPpGpu',·['../structgmx__pme__pp.xhtml#a209fc2f7867ff6901c6e8ce977f54eff',·1,·'gmx_pme_pp']]],504 ····['sendforcesdirecttoppgpu_329',·['sendForcesDirectToPpGpu',·['../structgmx__pme__pp.xhtml#a209fc2f7867ff6901c6e8ce977f54eff',·1,·'gmx_pme_pp']]],
505 ····['sendftoppgpuawarempi_330',·['sendftoppgpuawarempi',·['../classgmx_1_1PmeForceSenderGpu.xhtml#aec4535379f56724c0230d2cf84637c04',·1,·'gmx::PmeForceSenderGpu::sendFToPpGpuAwareMpi()'],505 ····['sendftoppgpuawarempi_330',·['sendftoppgpuawarempi',·['../classgmx_1_1PmeForceSenderGpu.xhtml#aec4535379f56724c0230d2cf84637c04',·1,·'gmx::PmeForceSenderGpu::sendFToPpGpuAwareMpi()'],
506 ········['../classgmx_1_1PmeForceSenderGpu_1_1Impl.xhtml#a928876afdf2aa59e65a3f8c32bf401de',·1,·'gmx::PmeForceSenderGpu::Impl::sendFToPpGpuAwareMpi(DeviceBuffer&lt;·RVec·&gt;·sendbuf,·int·offset,·int·numBytes,·int·ppRank,·MPI_Request·*request)']506 ········['../classgmx_1_1PmeForceSenderGpu_1_1Impl.xhtml#a928876afdf2aa59e65a3f8c32bf401de',·1,·'gmx::PmeForceSenderGpu::Impl::sendFToPpGpuAwareMpi()']
507 ····]],507 ····]],
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508 ····['sendftopppeertopeer_331',·['sendftopppeertopeer',·['../classgmx_1_1PmeForceSenderGpu_1_1Impl.xhtml#a32fa8a38e5ceef0147a72f5359dd572c',·1,·'gmx::PmeForceSenderGpu::Impl::sendFToPpPeerToPeer()'],509 ········['../classgmx_1_1PmeForceSenderGpu_1_1Impl.xhtml#a32fa8a38e5ceef0147a72f5359dd572c',·1,·'gmx::PmeForceSenderGpu::Impl::sendFToPpPeerToPeer()']
509 ········['../classgmx_1_1PmeForceSenderGpu.xhtml#aae40adba2195e64f4afb246e49b869de',·1,·'gmx::PmeForceSenderGpu::sendFToPpPeerToPeer()'] 
510 ····]],510 ····]],
511 ····['sendinitdata_332',·['sendInitData',·['../classgmx_1_1MimicCommunicator.xhtml#a9c08a5c6effe79ce071a85ff228da148',·1,·'gmx::MimicCommunicator']]],511 ····['sendinitdata_332',·['sendInitData',·['../classgmx_1_1MimicCommunicator.xhtml#a9c08a5c6effe79ce071a85ff228da148',·1,·'gmx::MimicCommunicator']]],
512 ····['sendxbuf_333',·['sendxbuf',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#a8406c909832be820f0ca7940cd86990b',·1,·'gmx::ImdSession::Impl']]],512 ····['sendxbuf_333',·['sendxbuf',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#a8406c909832be820f0ca7940cd86990b',·1,·'gmx::ImdSession::Impl']]],
513 ····['separatedhdlfile_334',·['SeparateDhdlFile',·['../md__enums_8h.xhtml#ae8d0187ba4608fb1f8713e7e9d78c8ba',·1,·'md_enums.h']]],513 ····['separatedhdlfile_334',·['SeparateDhdlFile',·['../md__enums_8h.xhtml#ae8d0187ba4608fb1f8713e7e9d78c8ba',·1,·'md_enums.h']]],
514 ····['separatepmerankspermitted_335',·['SeparatePmeRanksPermitted',·['../classgmx_1_1SeparatePmeRanksPermitted.xhtml',·1,·'gmx']]],514 ····['separatepmerankspermitted_335',·['SeparatePmeRanksPermitted',·['../classgmx_1_1SeparatePmeRanksPermitted.xhtml',·1,·'gmx']]],
515 ····['seqindex_5f_336',·['seqIndex_',·['../classgmx_1_1test_1_1TestReferenceChecker_1_1Impl.xhtml#a5de7f1436e0bfefd57108e96072cf242',·1,·'gmx::test::TestReferenceChecker::Impl']]],515 ····['seqindex_5f_336',·['seqIndex_',·['../classgmx_1_1test_1_1TestReferenceChecker_1_1Impl.xhtml#a5de7f1436e0bfefd57108e96072cf242',·1,·'gmx::test::TestReferenceChecker::Impl']]],
516 ····['sequence_20diagrams_337',·['Sequence·diagrams',·['../page_modularsimulator.xhtml#autotoc_md15',·1,·'']]],516 ····['sequence_20diagrams_337',·['Sequence·diagrams',·['../page_modularsimulator.xhtml#autotoc_md15',·1,·'']]],
517 ····['serialize_338',·['serialize',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a50048c80aa705da4cef888a46a967798',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}::serialize(ISerializer·*serializer,·ContainerType·*valueContainer)'],517 ····['serialize_338',·['serialize',·['../classStringTableEntry.xhtml#a247dac31349e22ce9fbd2d3bffc55391',·1,·'StringTableEntry::serialize()'],
518 ········['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#acf297bf2a7ec62dea44eb8b365d03ab0',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}::serialize(ISerializer·*serializer,·ContainerType·*valueContainer)'],518 ········['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#acf297bf2a7ec62dea44eb8b365d03ab0',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}::serialize()'],
519 ········['../classgmx_1_1AwhParams.xhtml#af13d6b0b5b25414cbe239ee68ee7d77b',·1,·'gmx::AwhParams::serialize()'], 
520 ········['../classgmx_1_1WriteCheckpointDataHolder.xhtml#a7280a156bf095d56ba0dd6603f66695c',·1,·'gmx::WriteCheckpointDataHolder::serialize()'],519 ········['../classgmx_1_1WriteCheckpointDataHolder.xhtml#a7280a156bf095d56ba0dd6603f66695c',·1,·'gmx::WriteCheckpointDataHolder::serialize()'],
521 ········['../classStringTableEntry.xhtml#a247dac31349e22ce9fbd2d3bffc55391',·1,·'StringTableEntry::serialize()']520 ········['../classgmx_1_1AwhParams.xhtml#af13d6b0b5b25414cbe239ee68ee7d77b',·1,·'gmx::AwhParams::serialize()'],
 521 ········['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a50048c80aa705da4cef888a46a967798',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}::serialize(ISerializer·*serializer,·ContainerType·*valueContainer)']
522 ····]],522 ····]],
523 ····['serializeasint32_339',·['serializeAsInt32',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a21f390715ba1be46887d59e4d0857c5d',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],523 ····['serializeasint32_339',·['serializeAsInt32',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a21f390715ba1be46887d59e4d0857c5d',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],
524 ····['serializecrystallographicskewdata_340',·['serializeCrystallographicSkewData',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a03ec44827db007bff7a4b464e6f60946',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],524 ····['serializecrystallographicskewdata_340',·['serializeCrystallographicSkewData',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a03ec44827db007bff7a4b464e6f60946',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],
525 ····['serializedeviceinformations_341',·['serializedeviceinformations',·['../device__management_8h.xhtml#a0474af76f1cd285db14571db25ab25cb',·1,·'serializeDeviceInformations(const·std::vector&lt;·std::unique_ptr&lt;·DeviceInformation·&gt;·&gt;·&amp;deviceInfoList,·gmx::ISerializer·*serializer):&#160;device_management_common.cpp'],525 ····['serializedeviceinformations_341',·['serializedeviceinformations',·['../device__management__common_8cpp.xhtml#a0474af76f1cd285db14571db25ab25cb',·1,·'serializeDeviceInformations(const·std::vector&lt;·std::unique_ptr&lt;·DeviceInformation·&gt;·&gt;·&amp;deviceInfoList,·gmx::ISerializer·*serializer):&#160;device_management_common.cpp'],
526 ········['../device__management__common_8cpp.xhtml#a0474af76f1cd285db14571db25ab25cb',·1,·'serializeDeviceInformations(const·std::vector&lt;·std::unique_ptr&lt;·DeviceInformation·&gt;·&gt;·&amp;deviceInfoList,·gmx::ISerializer·*serializer):&#160;device_management_common.cpp']526 ········['../device__management_8h.xhtml#a0474af76f1cd285db14571db25ab25cb',·1,·'serializeDeviceInformations(const·std::vector&lt;·std::unique_ptr&lt;·DeviceInformation·&gt;·&gt;·&amp;deviceInfoList,·gmx::ISerializer·*serializer):&#160;device_management_common.cpp']
527 ····]],527 ····]],
528 ····['serializedistance_342',·['serializeDistance',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#ad082c292293ec38f61e8e8d7099adfc1',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],528 ····['serializedistance_342',·['serializeDistance',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#ad082c292293ec38f61e8e8d7099adfc1',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],
529 ····['serializefepstatevalue_343',·['serializeFEPStateValue',·['../namespaceanonymous__namespace_02atoms_8cpp_03.xhtml#affc6d54d2995d645c93d6ce969d08b60',·1,·'anonymous_namespace{atoms.cpp}']]],529 ····['serializefepstatevalue_343',·['serializeFEPStateValue',·['../namespaceanonymous__namespace_02atoms_8cpp_03.xhtml#affc6d54d2995d645c93d6ce969d08b60',·1,·'anonymous_namespace{atoms.cpp}']]],
530 ····['serializeindex_344',·['serializeIndex',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a9f8b9fdd59cb7ab0c3b02ba9049086ba',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],530 ····['serializeindex_344',·['serializeIndex',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a9f8b9fdd59cb7ab0c3b02ba9049086ba',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],
531 ····['serializeindices_345',·['serializeIndices',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a54d8c4a0fd3adda2006c2e87469a9fbe',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],531 ····['serializeindices_345',·['serializeIndices',·['../namespacegmx_1_1anonymous__namespace_02mrcserializer_8cpp_03.xhtml#a54d8c4a0fd3adda2006c2e87469a9fbe',·1,·'gmx::anonymous_namespace{mrcserializer.cpp}']]],
532 ····['serializekeyvaluetree_346',·['serializeKeyValueTree',·['../group__module__utility.xhtml#gac492f6f7f07670658a028ddddaf2b2ab',·1,·'gmx']]],532 ····['serializekeyvaluetree_346',·['serializeKeyValueTree',·['../group__module__utility.xhtml#gac492f6f7f07670658a028ddddaf2b2ab',·1,·'gmx']]],
533 ····['serializemrcdensitymapheader_347',·['serializeMrcDensityMapHeader',·['../namespacegmx.xhtml#a5155703ab2ced2f51fb4533e20006061',·1,·'gmx']]],533 ····['serializemrcdensitymapheader_347',·['serializeMrcDensityMapHeader',·['../namespacegmx.xhtml#a5155703ab2ced2f51fb4533e20006061',·1,·'gmx']]],
534 ····['serializeparticle_348',·['serializeParticle',·['../classSimulationParticle.xhtml#a75cf84775c19b87cbe4123e3083cec80',·1,·'SimulationParticle']]],534 ····['serializeparticle_348',·['serializeParticle',·['../classSimulationParticle.xhtml#a75cf84775c19b87cbe4123e3083cec80',·1,·'SimulationParticle']]],
535 ····['serializestringtable_349',·['serializeStringTable',·['../classStringTable.xhtml#a15fcf1107a2f8641e5bb29660e568afe',·1,·'StringTable']]],535 ····['serializestringtable_349',·['serializeStringTable',·['../classStringTable.xhtml#a15fcf1107a2f8641e5bb29660e568afe',·1,·'StringTable']]],
536 ····['serializevalue_350',·['serializevalue',·['../namespaceanonymous__namespace_02atoms_8cpp_03.xhtml#a217ed846a46d7f46b27ddd8e2cb523ff',·1,·'anonymous_namespace{atoms.cpp}::serializeValue(gmx::ISerializer·*serializer,·real·*value)'], 
537 ········['../namespaceanonymous__namespace_02atoms_8cpp_03.xhtml#afe178996894904b7dfd46f4ca3c0a6b8',·1,·'anonymous_namespace{atoms.cpp}::serializeValue(gmx::ISerializer·*serializer,·NameHolder·*value,·const·StringTable·&amp;table)'],536 ····['serializevalue_350',·['serializevalue',·['../namespaceanonymous__namespace_02atoms_8cpp_03.xhtml#afe178996894904b7dfd46f4ca3c0a6b8',·1,·'anonymous_namespace{atoms.cpp}::serializeValue(gmx::ISerializer·*serializer,·NameHolder·*value,·const·StringTable·&amp;table)'],
538 ········['../namespaceanonymous__namespace_02atoms_8cpp_03.xhtml#a3157b99b1bedcfe7b4265f83cb6bc3f4',·1,·'anonymous_namespace{atoms.cpp}::serializeValue(gmx::ISerializer·*serializer,·NameHolder·*value)'], 
539 ········['../namespaceanonymous__namespace_02atoms_8cpp_03.xhtml#a745fdcc1e0a8b9364ff6df20862a33ce',·1,·'anonymous_namespace{atoms.cpp}::serializeValue(gmx::ISerializer·*serializer,·unsigned·short·*value)']537 ········['../namespaceanonymous__namespace_02atoms_8cpp_03.xhtml#a745fdcc1e0a8b9364ff6df20862a33ce',·1,·'anonymous_namespace{atoms.cpp}::serializeValue(gmx::ISerializer·*serializer,·unsigned·short·*value)'],
 538 ········['../namespaceanonymous__namespace_02atoms_8cpp_03.xhtml#a217ed846a46d7f46b27ddd8e2cb523ff',·1,·'anonymous_namespace{atoms.cpp}::serializeValue(gmx::ISerializer·*serializer,·real·*value)'],
 539 ········['../namespaceanonymous__namespace_02atoms_8cpp_03.xhtml#a3157b99b1bedcfe7b4265f83cb6bc3f4',·1,·'anonymous_namespace{atoms.cpp}::serializeValue(gmx::ISerializer·*serializer,·NameHolder·*value)']
540 ····]],540 ····]],
541 ····['serializevaluetype_351',·['serializeValueType',·['../namespacegmx_1_1anonymous__namespace_02keyvaluetreeserializer_8cpp_03.xhtml#ae6763d0fe0a3afb9c9d057f76a41e2d5',·1,·'gmx::anonymous_namespace{keyvaluetreeserializer.cpp}']]],541 ····['serializevaluetype_351',·['serializeValueType',·['../namespacegmx_1_1anonymous__namespace_02keyvaluetreeserializer_8cpp_03.xhtml#ae6763d0fe0a3afb9c9d057f76a41e2d5',·1,·'gmx::anonymous_namespace{keyvaluetreeserializer.cpp}']]],
542 ····['series_5fsinhx_352',·['series_sinhx',·['../namespacegmx.xhtml#a92d3eb4aaecff5c613995ed4bce22a0a',·1,·'gmx']]],542 ····['series_5fsinhx_352',·['series_sinhx',·['../namespacegmx.xhtml#a92d3eb4aaecff5c613995ed4bce22a0a',·1,·'gmx']]],
543 ····['sessionpossible_353',·['sessionPossible',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#a2a520cd67703dbad9a08fa372e88cdf3',·1,·'gmx::ImdSession::Impl']]],543 ····['sessionpossible_353',·['sessionPossible',·['../classgmx_1_1ImdSession_1_1Impl.xhtml#a2a520cd67703dbad9a08fa372e88cdf3',·1,·'gmx::ImdSession::Impl']]],
544 ····['set_354',·['set',·['../classgmx_1_1SimulationSignal.xhtml#a2f60c4f184cf42ebd97c52c91d287f63',·1,·'gmx::SimulationSignal::set'], 
545 ········['../classgmx_1_1LincsGpu.xhtml#a7c7ef58ff02dd4b25f4c3b3618694ba4',·1,·'gmx::LincsGpu::set()'], 
546 ········['../classgmx_1_1SettleGpu.xhtml#a5368b3f8d0668cf397c08f196f10a638',·1,·'gmx::SettleGpu::set()'],544 ····['set_354',·['set',·['../classgmx_1_1SettleGpu.xhtml#a5368b3f8d0668cf397c08f196f10a638',·1,·'gmx::SettleGpu::set()'],
 545 ········['../classgmx_1_1FlagsTemplate.xhtml#a6964255db6b459fddd71b8a87c0c8211',·1,·'gmx::FlagsTemplate::set(FlagType·flag,·bool·bSet)'],
547 ········['../parser__internal_8h.xhtml#a8553aeb4ef79ad62e90241cf54e221d5',·1,·'set():&#160;parser_internal.h'], 
548 ········['../classgmx_1_1UpdateConstrainGpu_1_1Impl.xhtml#a684c2f7bcbac6dfbb29b1223cb083af0',·1,·'gmx::UpdateConstrainGpu::Impl::set()'], 
549 ········['../classgmx_1_1FlagsTemplate.xhtml#a0a4b09657a2bf81b9a7765d7560da202',·1,·'gmx::FlagsTemplate::set(FlagType·flag)'],546 ········['../classgmx_1_1FlagsTemplate.xhtml#a0a4b09657a2bf81b9a7765d7560da202',·1,·'gmx::FlagsTemplate::set(FlagType·flag)'],
550 ········['../classgmx_1_1FlagsTemplate.xhtml#a6964255db6b459fddd71b8a87c0c8211',·1,·'gmx::FlagsTemplate::set(FlagType·flag,·bool·bSet)']547 ········['../classgmx_1_1UpdateConstrainGpu_1_1Impl.xhtml#a684c2f7bcbac6dfbb29b1223cb083af0',·1,·'gmx::UpdateConstrainGpu::Impl::set()'],
 548 ········['../parser__internal_8h.xhtml#a8553aeb4ef79ad62e90241cf54e221d5',·1,·'set():&#160;parser_internal.h'],
 549 ········['../classgmx_1_1SimulationSignal.xhtml#a2f60c4f184cf42ebd97c52c91d287f63',·1,·'gmx::SimulationSignal::set'],
 550 ········['../classgmx_1_1LincsGpu.xhtml#a7c7ef58ff02dd4b25f4c3b3618694ba4',·1,·'gmx::LincsGpu::set()']
551 ····]],551 ····]],
552 ····['set_5fatoms_355',·['set_atoms',·['../indexutil_8cpp.xhtml#a70ece65ec7e83272fca80a96ef3d2847',·1,·'indexutil.cpp']]],552 ····['set_5fatoms_355',·['set_atoms',·['../indexutil_8cpp.xhtml#a70ece65ec7e83272fca80a96ef3d2847',·1,·'indexutil.cpp']]],
553 ····['set_5fbox_5frel_356',·['set_box_rel',·['../state_8h.xhtml#a6f96a8a73bc80a569e68d84bdea39eeb',·1,·'state.cpp']]],553 ····['set_5fbox_5frel_356',·['set_box_rel',·['../state_8h.xhtml#a6f96a8a73bc80a569e68d84bdea39eeb',·1,·'state.cpp']]],
554 ····['set_5fdd_5fcell_5fsizes_357',·['set_dd_cell_sizes',·['../cellsizes_8h.xhtml#a13a488d22b535ac37feeeea1976d02a2',·1,·'cellsizes.cpp']]],554 ····['set_5fdd_5fcell_5fsizes_357',·['set_dd_cell_sizes',·['../cellsizes_8h.xhtml#a13a488d22b535ac37feeeea1976d02a2',·1,·'cellsizes.cpp']]],
555 ····['set_5fdd_5fcell_5fsizes_5fslb_358',·['set_dd_cell_sizes_slb',·['../cellsizes_8h.xhtml#a636bac8dbffda8e0f69cee7b6f2fbfdc',·1,·'cellsizes.cpp']]],555 ····['set_5fdd_5fcell_5fsizes_5fslb_358',·['set_dd_cell_sizes_slb',·['../cellsizes_8h.xhtml#a636bac8dbffda8e0f69cee7b6f2fbfdc',·1,·'cellsizes.cpp']]],
556 ····['set_5fdd_5fcorners_359',·['set_dd_corners',·['../partition_8cpp.xhtml#ae66c14d715a0611d7a8224fe94c4bf22',·1,·'partition.cpp']]],556 ····['set_5fdd_5fcorners_359',·['set_dd_corners',·['../partition_8cpp.xhtml#ae66c14d715a0611d7a8224fe94c4bf22',·1,·'partition.cpp']]],
557 ····['set_5fdd_5fdim_360',·['set_dd_dim',·['../domdec__setup_8cpp.xhtml#a48adf64b6000c286d6bcc18476b350ed',·1,·'domdec_setup.cpp']]],557 ····['set_5fdd_5fdim_360',·['set_dd_dim',·['../domdec__setup_8cpp.xhtml#a48adf64b6000c286d6bcc18476b350ed',·1,·'domdec_setup.cpp']]],
 558 ····['set_5fdd_5fdlb_5fmax_5fcutoff_361',·['set_dd_dlb_max_cutoff',·['../dlb_8h.xhtml#a157bf71cdab9ea140756a04b124db881',·1,·'set_dd_dlb_max_cutoff(struct·t_commrec·*cr,·real·cutoff):&#160;partition.cpp'],
558 ····['set_5fdd_5fdlb_5fmax_5fcutoff_361',·['set_dd_dlb_max_cutoff',·['../partition_8cpp.xhtml#a2835023cad6d4adddea91fcec249e9bc',·1,·'set_dd_dlb_max_cutoff(t_commrec·*cr,·real·cutoff):&#160;partition.cpp'],559 ········['../partition_8cpp.xhtml#a2835023cad6d4adddea91fcec249e9bc',·1,·'set_dd_dlb_max_cutoff(t_commrec·*cr,·real·cutoff):&#160;partition.cpp']
559 ········['../dlb_8h.xhtml#a157bf71cdab9ea140756a04b124db881',·1,·'set_dd_dlb_max_cutoff(struct·t_commrec·*cr,·real·cutoff):&#160;partition.cpp'] 
560 ····]],560 ····]],
561 ····['set_5fddbox_362',·['set_ddbox',·['../box_8cpp.xhtml#a09243bfbf2345fb0a087fef39778b82b',·1,·'set_ddbox(const·gmx_domdec_t·&amp;dd,·bool·mainRankHasTheSystemState,·const·matrix·box,·bool·calculateUnboundedSize,·gmx::ArrayRef&lt;·const·gmx::RVec·&gt;·x,·gmx_ddbox_t·*ddbox):&#160;box.cpp'],561 ····['set_5fddbox_362',·['set_ddbox',·['../box_8cpp.xhtml#a09243bfbf2345fb0a087fef39778b82b',·1,·'set_ddbox(const·gmx_domdec_t·&amp;dd,·bool·mainRankHasTheSystemState,·const·matrix·box,·bool·calculateUnboundedSize,·gmx::ArrayRef&lt;·const·gmx::RVec·&gt;·x,·gmx_ddbox_t·*ddbox):&#160;box.cpp'],
562 ········['../box_8h.xhtml#a09243bfbf2345fb0a087fef39778b82b',·1,·'set_ddbox(const·gmx_domdec_t·&amp;dd,·bool·mainRankHasTheSystemState,·const·matrix·box,·bool·calculateUnboundedSize,·gmx::ArrayRef&lt;·const·gmx::RVec·&gt;·x,·gmx_ddbox_t·*ddbox):&#160;box.cpp']562 ········['../box_8h.xhtml#a09243bfbf2345fb0a087fef39778b82b',·1,·'set_ddbox(const·gmx_domdec_t·&amp;dd,·bool·mainRankHasTheSystemState,·const·matrix·box,·bool·calculateUnboundedSize,·gmx::ArrayRef&lt;·const·gmx::RVec·&gt;·x,·gmx_ddbox_t·*ddbox):&#160;box.cpp']
563 ····]],563 ····]],
564 ····['set_5fddbox_5fcr_363',·['set_ddbox_cr',·['../box_8h.xhtml#a52357ea3f4fc5083f33b68b2dba2eb34',·1,·'set_ddbox_cr(DDRole·ddRole,·MPI_Comm·communicator,·const·gmx::IVec·*numDomains,·const·t_inputrec·&amp;ir,·const·matrix·box,·gmx::ArrayRef&lt;·const·gmx::RVec·&gt;·x,·gmx_ddbox_t·*ddbox):&#160;box.cpp'],564 ····['set_5fddbox_5fcr_363',·['set_ddbox_cr',·['../box_8cpp.xhtml#a52357ea3f4fc5083f33b68b2dba2eb34',·1,·'set_ddbox_cr(DDRole·ddRole,·MPI_Comm·communicator,·const·gmx::IVec·*numDomains,·const·t_inputrec·&amp;ir,·const·matrix·box,·gmx::ArrayRef&lt;·const·gmx::RVec·&gt;·x,·gmx_ddbox_t·*ddbox):&#160;box.cpp'],
565 ········['../box_8cpp.xhtml#a52357ea3f4fc5083f33b68b2dba2eb34',·1,·'set_ddbox_cr(DDRole·ddRole,·MPI_Comm·communicator,·const·gmx::IVec·*numDomains,·const·t_inputrec·&amp;ir,·const·matrix·box,·gmx::ArrayRef&lt;·const·gmx::RVec·&gt;·x,·gmx_ddbox_t·*ddbox):&#160;box.cpp']565 ········['../box_8h.xhtml#a52357ea3f4fc5083f33b68b2dba2eb34',·1,·'set_ddbox_cr(DDRole·ddRole,·MPI_Comm·communicator,·const·gmx::IVec·*numDomains,·const·t_inputrec·&amp;ir,·const·matrix·box,·gmx::ArrayRef&lt;·const·gmx::RVec·&gt;·x,·gmx_ddbox_t·*ddbox):&#160;box.cpp']
566 ····]],566 ····]],
567 ····['set_5fdlb_5flimits_364',·['set_dlb_limits',·['../dlb_8h.xhtml#afaf4f569d865a98d3fa62b86aecc8e77',·1,·'set_dlb_limits(gmx_domdec_t·*dd):&#160;dlb.cpp'],567 ····['set_5fdlb_5flimits_364',·['set_dlb_limits',·['../dlb_8h.xhtml#afaf4f569d865a98d3fa62b86aecc8e77',·1,·'set_dlb_limits(gmx_domdec_t·*dd):&#160;dlb.cpp'],
568 ········['../dlb_8cpp.xhtml#afaf4f569d865a98d3fa62b86aecc8e77',·1,·'set_dlb_limits(gmx_domdec_t·*dd):&#160;dlb.cpp']568 ········['../dlb_8cpp.xhtml#afaf4f569d865a98d3fa62b86aecc8e77',·1,·'set_dlb_limits(gmx_domdec_t·*dd):&#160;dlb.cpp']
569 ····]],569 ····]],
570 ····['set_5fempty_365',·['set_empty',·['../parser__internal_8h.xhtml#a0340e95b333de1fa7bf551b2a87448e7',·1,·'parser_internal.h']]],570 ····['set_5fempty_365',·['set_empty',·['../parser__internal_8h.xhtml#a0340e95b333de1fa7bf551b2a87448e7',·1,·'parser_internal.h']]],
571 ····['set_5fevaluation_5ffunction_366',·['set_evaluation_function',·['../compiler_8cpp.xhtml#a35320786c5039f3728adb84d85bd4c2b',·1,·'compiler.cpp']]],571 ····['set_5fevaluation_5ffunction_366',·['set_evaluation_function',·['../compiler_8cpp.xhtml#a35320786c5039f3728adb84d85bd4c2b',·1,·'compiler.cpp']]],
572 ····['set_5fexpr_5fvalue_5fstore_367',·['set_expr_value_store',·['../params_8cpp.xhtml#a5da3b2e33fb571c3956ee81d257a8fc1',·1,·'params.cpp']]],572 ····['set_5fexpr_5fvalue_5fstore_367',·['set_expr_value_store',·['../params_8cpp.xhtml#a5da3b2e33fb571c3956ee81d257a8fc1',·1,·'params.cpp']]],
Offset 584, 17 lines modifiedOffset 584, 17 lines modified
584 ····['set_5fposcoll_5fpos_379',·['set_poscoll_pos',·['../sm__position_8cpp.xhtml#a91b6fe60490830e01753fc702a4f0da6',·1,·'sm_position.cpp']]],584 ····['set_5fposcoll_5fpos_379',·['set_poscoll_pos',·['../sm__position_8cpp.xhtml#a91b6fe60490830e01753fc702a4f0da6',·1,·'sm_position.cpp']]],
585 ····['set_5frefpos_5ftype_380',·['set_refpos_type',·['../parsetree_8cpp.xhtml#a57baca0c38204cd51a3d1a433936599e',·1,·'parsetree.cpp']]],585 ····['set_5frefpos_5ftype_380',·['set_refpos_type',·['../parsetree_8cpp.xhtml#a57baca0c38204cd51a3d1a433936599e',·1,·'parsetree.cpp']]],
586 ····['set_5ftric_5fdir_381',·['set_tric_dir',·['../box_8cpp.xhtml#ad1b515f02b66cf33e6aa1cc9ec687875',·1,·'box.cpp']]],586 ····['set_5ftric_5fdir_381',·['set_tric_dir',·['../box_8cpp.xhtml#ad1b515f02b66cf33e6aa1cc9ec687875',·1,·'box.cpp']]],
587 ····['set_5funit_5fsystem_382',·['set_unit_system',·['../classgmx_1_1ColvarProxyGromacs.xhtml#affa600110ea56d0c552bfd70b97ed047',·1,·'gmx::ColvarProxyGromacs']]],587 ····['set_5funit_5fsystem_382',·['set_unit_system',·['../classgmx_1_1ColvarProxyGromacs.xhtml#affa600110ea56d0c552bfd70b97ed047',·1,·'gmx::ColvarProxyGromacs']]],
588 ····['set_5fzones_5fnumhomeatoms_383',·['set_zones_numHomeAtoms',·['../partition_8cpp.xhtml#ac86fe3a1da28baad5fe956c844894701',·1,·'partition.cpp']]],588 ····['set_5fzones_5fnumhomeatoms_383',·['set_zones_numHomeAtoms',·['../partition_8cpp.xhtml#ac86fe3a1da28baad5fe956c844894701',·1,·'partition.cpp']]],
589 ····['setabstol_384',·['setAbsTol',·['../classgmx_1_1test_1_1SimdBaseTest.xhtml#aba2dcd7ec0563e05aafd6c176fb286c4',·1,·'gmx::test::SimdBaseTest']]],589 ····['setabstol_384',·['setAbsTol',·['../classgmx_1_1test_1_1SimdBaseTest.xhtml#aba2dcd7ec0563e05aafd6c176fb286c4',·1,·'gmx::test::SimdBaseTest']]],
590 ····['setacceptbooleannoprefix_385',·['setAcceptBooleanNoPrefix',·['../classgmx_1_1OptionsAssigner.xhtml#a56938380411404494b76c1170f7ceb7f',·1,·'gmx::OptionsAssigner']]],590 ····['setacceptbooleannoprefix_385',·['setAcceptBooleanNoPrefix',·['../classgmx_1_1OptionsAssigner.xhtml#a56938380411404494b76c1170f7ceb7f',·1,·'gmx::OptionsAssigner']]],
 591 ····['setactivedevice_386',·['setactivedevice',·['../device__management__sycl_8cpp.xhtml#a2151c2e4fcc6447a9d753c00748b0aa0',·1,·'setActiveDevice(const·DeviceInformation·&amp;):&#160;device_management_sycl.cpp'],
591 ····['setactivedevice_386',·['setactivedevice',·['../device__management_8h.xhtml#a48173236bcd8e9fc7af6ae4472e04b95',·1,·'setActiveDevice(const·DeviceInformation·&amp;deviceInfo):&#160;device_management.cpp'],592 ········['../device__management_8h.xhtml#a48173236bcd8e9fc7af6ae4472e04b95',·1,·'setActiveDevice(const·DeviceInformation·&amp;deviceInfo):&#160;device_management.cpp'],
592 ········['../device__management_8cpp.xhtml#a2151c2e4fcc6447a9d753c00748b0aa0',·1,·'setActiveDevice(const·DeviceInformation·&amp;):&#160;device_management.cpp'],593 ········['../device__management_8cpp.xhtml#a2151c2e4fcc6447a9d753c00748b0aa0',·1,·'setActiveDevice(const·DeviceInformation·&amp;):&#160;device_management.cpp'],
593 ········['../device__management__sycl_8cpp.xhtml#a2151c2e4fcc6447a9d753c00748b0aa0',·1,·'setActiveDevice(const·DeviceInformation·&amp;):&#160;device_management_sycl.cpp'], 
594 ········['../device__management__ocl_8cpp.xhtml#a48173236bcd8e9fc7af6ae4472e04b95',·1,·'setActiveDevice(const·DeviceInformation·&amp;deviceInfo):&#160;device_management_ocl.cpp'],594 ········['../device__management__ocl_8cpp.xhtml#a48173236bcd8e9fc7af6ae4472e04b95',·1,·'setActiveDevice(const·DeviceInformation·&amp;deviceInfo):&#160;device_management_ocl.cpp'],
595 ········['../device__management__hip_8cpp.xhtml#a48173236bcd8e9fc7af6ae4472e04b95',·1,·'setActiveDevice(const·DeviceInformation·&amp;deviceInfo):&#160;device_management_hip.cpp']595 ········['../device__management__hip_8cpp.xhtml#a48173236bcd8e9fc7af6ae4472e04b95',·1,·'setActiveDevice(const·DeviceInformation·&amp;deviceInfo):&#160;device_management_hip.cpp']
596 ····]],596 ····]],
597 ····['setallowedvaluecount_387',·['setAllowedValueCount',·['../classgmx_1_1SelectionOptionStorage.xhtml#ad9f9dafcb85d5d4097716ec4a1b47771',·1,·'gmx::SelectionOptionStorage']]],597 ····['setallowedvaluecount_387',·['setAllowedValueCount',·['../classgmx_1_1SelectionOptionStorage.xhtml#ad9f9dafcb85d5d4097716ec4a1b47771',·1,·'gmx::SelectionOptionStorage']]],
598 ····['setalternatesteppptaskcompletionevent_388',·['setAlternateStepPpTaskCompletionEvent',·['../classgmx_1_1MdGpuGraph_1_1Impl.xhtml#a0dda5a4c6c0ce568851edff2d8a1a607',·1,·'gmx::MdGpuGraph::Impl']]],598 ····['setalternatesteppptaskcompletionevent_388',·['setAlternateStepPpTaskCompletionEvent',·['../classgmx_1_1MdGpuGraph_1_1Impl.xhtml#a0dda5a4c6c0ce568851edff2d8a1a607',·1,·'gmx::MdGpuGraph::Impl']]],
599 ····['setandcheckmtslevels_389',·['setAndCheckMtsLevels',·['../namespacegmx_1_1test_1_1anonymous__namespace_02multipletimestepping_8cpp_03.xhtml#ab30ddb3d9552135e7cdf3f409ca7e440',·1,·'gmx::test::anonymous_namespace{multipletimestepping.cpp}']]],599 ····['setandcheckmtslevels_389',·['setAndCheckMtsLevels',·['../namespacegmx_1_1test_1_1anonymous__namespace_02multipletimestepping_8cpp_03.xhtml#ab30ddb3d9552135e7cdf3f409ca7e440',·1,·'gmx::test::anonymous_namespace{multipletimestepping.cpp}']]],
600 ····['setanharmpolarization_390',·['setAnharmPolarization',·['../structgmx_1_1test_1_1anonymous__namespace_02bonded_8cpp_03_1_1iListInput.xhtml#a453466f2383839a833488037e97e52aa',·1,·'gmx::test::anonymous_namespace{bonded.cpp}::iListInput']]],600 ····['setanharmpolarization_390',·['setAnharmPolarization',·['../structgmx_1_1test_1_1anonymous__namespace_02bonded_8cpp_03_1_1iListInput.xhtml#a453466f2383839a833488037e97e52aa',·1,·'gmx::test::anonymous_namespace{bonded.cpp}::iListInput']]],
Offset 604, 16 lines modifiedOffset 604, 16 lines modified
604 ····['setatomproperty_394',·['setAtomProperty',·['../classAtomProperties.xhtml#a739d39a4fa53255266ada2df41fa7544',·1,·'AtomProperties']]],604 ····['setatomproperty_394',·['setAtomProperty',·['../classAtomProperties.xhtml#a739d39a4fa53255266ada2df41fa7544',·1,·'AtomProperties']]],
605 ····['setatomrangeend_395',·['setAtomRangeEnd',·['../classgmx_1_1DomdecZones.xhtml#ae98910a3b4eb865dfadd0a28fc65c966',·1,·'gmx::DomdecZones']]],605 ····['setatomrangeend_395',·['setAtomRangeEnd',·['../classgmx_1_1DomdecZones.xhtml#ae98910a3b4eb865dfadd0a28fc65c966',·1,·'gmx::DomdecZones']]],
606 ····['setatoms_396',·['setatoms',·['../classgmx_1_1SetAtoms.xhtml#a80c1dc4a5976db3daa93602215fb6e04',·1,·'gmx::SetAtoms::SetAtoms(ChangeAtomsType·atomFlag,·AtomsDataPtr·inputAtoms)'],606 ····['setatoms_396',·['setatoms',·['../classgmx_1_1SetAtoms.xhtml#a80c1dc4a5976db3daa93602215fb6e04',·1,·'gmx::SetAtoms::SetAtoms(ChangeAtomsType·atomFlag,·AtomsDataPtr·inputAtoms)'],
607 ········['../classgmx_1_1SetAtoms.xhtml#acfbc067f9a1b885b52204c156077c712',·1,·'gmx::SetAtoms::SetAtoms(SetAtoms·&amp;&amp;old)·noexcept'],607 ········['../classgmx_1_1SetAtoms.xhtml#acfbc067f9a1b885b52204c156077c712',·1,·'gmx::SetAtoms::SetAtoms(SetAtoms·&amp;&amp;old)·noexcept'],
608 ········['../classgmx_1_1test_1_1SetAtomsTest.xhtml#ae8e6ba12468592edc3e51ce31449532f',·1,·'gmx::test::SetAtomsTest::setAtoms()'],608 ········['../classgmx_1_1test_1_1SetAtomsTest.xhtml#ae8e6ba12468592edc3e51ce31449532f',·1,·'gmx::test::SetAtomsTest::setAtoms()'],
609 ········['../classgmx_1_1SetAtoms.xhtml',·1,·'gmx::SetAtoms']609 ········['../classgmx_1_1SetAtoms.xhtml',·1,·'gmx::SetAtoms']
610 ····]],610 ····]],
611 ····['setatoms_2ecpp_397',·['setatoms.cpp',·['../tests_2setatoms_8cpp.xhtml',·1,·'(Global·Namespace)'],611 ····['setatoms_2ecpp_397',·['setatoms.cpp',·['../outputadapters_2setatoms_8cpp.xhtml',·1,·'(Global·Namespace)'],
612 ········['../outputadapters_2setatoms_8cpp.xhtml',·1,·'(Global·Namespace)']612 ········['../tests_2setatoms_8cpp.xhtml',·1,·'(Global·Namespace)']
613 ····]],613 ····]],
614 ····['setatoms_2eh_398',·['setatoms.h',·['../setatoms_8h.xhtml',·1,·'']]],614 ····['setatoms_2eh_398',·['setatoms.h',·['../setatoms_8h.xhtml',·1,·'']]],
615 ····['setatomspointer_399',·['SetAtomsPointer',·['../namespacegmx.xhtml#a88c729a1b6597fd1b7d0ed0e62d4971b',·1,·'gmx']]],615 ····['setatomspointer_399',·['SetAtomsPointer',·['../namespacegmx.xhtml#a88c729a1b6597fd1b7d0ed0e62d4971b',·1,·'gmx']]],
616 ····['setatomssupported_400',·['setAtomsSupported',·['../namespacegmx_1_1test.xhtml#ace67bfa1326428a4e92b52de892d709e',·1,·'gmx::test']]],616 ····['setatomssupported_400',·['setAtomsSupported',·['../namespacegmx_1_1test.xhtml#ace67bfa1326428a4e92b52de892d709e',·1,·'gmx::test']]],
617 ····['setatomssupportedfiles_401',·['SetAtomsSupportedFiles',·['../classgmx_1_1test_1_1SetAtomsSupportedFiles.xhtml',·1,·'gmx::test']]],617 ····['setatomssupportedfiles_401',·['SetAtomsSupportedFiles',·['../classgmx_1_1test_1_1SetAtomsSupportedFiles.xhtml',·1,·'gmx::test']]],
618 ····['setatomstest_402',·['setatomstest',·['../classgmx_1_1test_1_1SetAtomsTest.xhtml#a551e80ccc16781970f15eba160df0ada',·1,·'gmx::test::SetAtomsTest::SetAtomsTest()'],618 ····['setatomstest_402',·['setatomstest',·['../classgmx_1_1test_1_1SetAtomsTest.xhtml#a551e80ccc16781970f15eba160df0ada',·1,·'gmx::test::SetAtomsTest::SetAtomsTest()'],
619 ········['../classgmx_1_1test_1_1SetAtomsTest.xhtml',·1,·'gmx::test::SetAtomsTest']619 ········['../classgmx_1_1test_1_1SetAtomsTest.xhtml',·1,·'gmx::test::SetAtomsTest']
Offset 623, 17 lines modifiedOffset 623, 17 lines modified
623 ····['setattribute_405',·['setAttribute',·['../namespacegmx.xhtml#a87c9d4293fe70eb69a90396d4b5379dd',·1,·'gmx']]],623 ····['setattribute_405',·['setAttribute',·['../namespacegmx.xhtml#a87c9d4293fe70eb69a90396d4b5379dd',·1,·'gmx']]],
624 ····['setauthor_406',·['setAuthor',·['../classgmx_1_1H5md.xhtml#a5eca049688ba0cc7e2bc4897f0e399bd',·1,·'gmx::H5md']]],624 ····['setauthor_406',·['setAuthor',·['../classgmx_1_1H5md.xhtml#a5eca049688ba0cc7e2bc4897f0e399bd',·1,·'gmx::H5md']]],
625 ····['setaveragedatasets_407',·['setAverageDataSets',·['../classgmx_1_1AnalysisDataAverageModule.xhtml#adc61ba269b01d93120060e48fc023ff1',·1,·'gmx::AnalysisDataAverageModule']]],625 ····['setaveragedatasets_407',·['setAverageDataSets',·['../classgmx_1_1AnalysisDataAverageModule.xhtml#adc61ba269b01d93120060e48fc023ff1',·1,·'gmx::AnalysisDataAverageModule']]],
626 ····['setbinwidth_408',·['setBinWidth',·['../classgmx_1_1ComputeDebyeScattering.xhtml#aa568dd95930b2b962e024245211dcb2d',·1,·'gmx::ComputeDebyeScattering']]],626 ····['setbinwidth_408',·['setBinWidth',·['../classgmx_1_1ComputeDebyeScattering.xhtml#aa568dd95930b2b962e024245211dcb2d',·1,·'gmx::ComputeDebyeScattering']]],
627 ····['setbothtime_2ecpp_409',·['setbothtime.cpp',·['../setbothtime_8cpp.xhtml',·1,·'']]],627 ····['setbothtime_2ecpp_409',·['setbothtime.cpp',·['../setbothtime_8cpp.xhtml',·1,·'']]],
628 ····['setbothtimetest_410',·['SetBothTimeTest',·['../classgmx_1_1test_1_1SetBothTimeTest.xhtml',·1,·'gmx::test']]],628 ····['setbothtimetest_410',·['SetBothTimeTest',·['../classgmx_1_1test_1_1SetBothTimeTest.xhtml',·1,·'gmx::test']]],
629 ····['setbound_411',·['setBound',·['../classWorkDivision.xhtml#a12b91800bf19728fc05be324c7ffea0e',·1,·'WorkDivision']]],629 ····['setbound_411',·['setBound',·['../classWorkDivision.xhtml#a12b91800bf19728fc05be324c7ffea0e',·1,·'WorkDivision']]],
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Offset 368, 28 lines modifiedOffset 368, 28 lines modified
368 ····['threadedforcebuffer_3c_20rvec4_20_3e_237',·['ThreadedForceBuffer&lt;·rvec4·&gt;',·['../classgmx_1_1ThreadedForceBuffer.xhtml',·1,·'gmx']]],368 ····['threadedforcebuffer_3c_20rvec4_20_3e_237',·['ThreadedForceBuffer&lt;·rvec4·&gt;',·['../classgmx_1_1ThreadedForceBuffer.xhtml',·1,·'gmx']]],
369 ····['threadforcebuffer_238',·['threadforcebuffer',·['../classgmx_1_1ThreadForceBuffer.xhtml#aca0ff0d302fd340a22c038f8c2b67ee3',·1,·'gmx::ThreadForceBuffer::ThreadForceBuffer()'],369 ····['threadforcebuffer_238',·['threadforcebuffer',·['../classgmx_1_1ThreadForceBuffer.xhtml#aca0ff0d302fd340a22c038f8c2b67ee3',·1,·'gmx::ThreadForceBuffer::ThreadForceBuffer()'],
370 ········['../classgmx_1_1ThreadForceBuffer.xhtml',·1,·'gmx::ThreadForceBuffer&lt;·ForceBufferElementType·&gt;'],370 ········['../classgmx_1_1ThreadForceBuffer.xhtml',·1,·'gmx::ThreadForceBuffer&lt;·ForceBufferElementType·&gt;'],
371 ········['../classgmx_1_1ThreadedForceBuffer.xhtml#aeae6df3244747db1017c222b74258cbe',·1,·'gmx::ThreadedForceBuffer::threadForceBuffer()']371 ········['../classgmx_1_1ThreadedForceBuffer.xhtml#aeae6df3244747db1017c222b74258cbe',·1,·'gmx::ThreadedForceBuffer::threadForceBuffer()']
372 ····]],372 ····]],
373 ····['threadforcebuffer_3c_20gmx_3a_3abasicvector_20_3e_239',·['ThreadForceBuffer&lt;·gmx::BasicVector·&gt;',·['../classgmx_1_1ThreadForceBuffer.xhtml',·1,·'gmx']]],373 ····['threadforcebuffer_3c_20gmx_3a_3abasicvector_20_3e_239',·['ThreadForceBuffer&lt;·gmx::BasicVector·&gt;',·['../classgmx_1_1ThreadForceBuffer.xhtml',·1,·'gmx']]],
374 ····['threadforcebuffer_3c_20rvec4_20_3e_240',·['ThreadForceBuffer&lt;·rvec4·&gt;',·['../classgmx_1_1ThreadForceBuffer.xhtml',·1,·'gmx']]],374 ····['threadforcebuffer_3c_20rvec4_20_3e_240',·['ThreadForceBuffer&lt;·rvec4·&gt;',·['../classgmx_1_1ThreadForceBuffer.xhtml',·1,·'gmx']]],
375 ····['threadinginfo_241',·['threadinginfo',·['../classgmx_1_1ThreadingInfo.xhtml',·1,·'gmx::ThreadingInfo'], 
376 ········['../classgmx_1_1ThreadingInfo.xhtml#a4f867dff40e9790d110a5bb58439f630',·1,·'gmx::ThreadingInfo::ThreadingInfo()']375 ····['threadinginfo_241',·['threadinginfo',·['../classgmx_1_1ThreadingInfo.xhtml#a4f867dff40e9790d110a5bb58439f630',·1,·'gmx::ThreadingInfo::ThreadingInfo()'],
 376 ········['../classgmx_1_1ThreadingInfo.xhtml',·1,·'gmx::ThreadingInfo']
377 ····]],377 ····]],
378 ····['threadmpimdrunneraccessbarrier_242',·['threadMpiMdrunnerAccessBarrier',·['../namespacegmx.xhtml#aef8b79bdbe453658a42421841b67dde7',·1,·'gmx']]],378 ····['threadmpimdrunneraccessbarrier_242',·['threadMpiMdrunnerAccessBarrier',·['../namespacegmx.xhtml#aef8b79bdbe453658a42421841b67dde7',·1,·'gmx']]],
379 ····['threadmpitestrunner_243',·['threadMpiTestRunner',·['../group__module__testutils.xhtml#ga6d3fae9732f12f43acd33c7e3ff009b9',·1,·'gmx::test']]],379 ····['threadmpitestrunner_243',·['threadMpiTestRunner',·['../group__module__testutils.xhtml#ga6d3fae9732f12f43acd33c7e3ff009b9',·1,·'gmx::test']]],
380 ····['threadsperatom_244',·['threadsperatom',·['../pme__gpu__constants_8h.xhtml#a3906f1a6891bba7e415ad2b7d3c4cef0',·1,·'ThreadsPerAtom:&#160;pme_gpu_constants.h'],380 ····['threadsperatom_244',·['threadsperatom',·['../pme__gpu__constants_8h.xhtml#a3906f1a6891bba7e415ad2b7d3c4cef0',·1,·'ThreadsPerAtom:&#160;pme_gpu_constants.h'],
381 ········['../structPmeGpuSettings.xhtml#a5e39fbddc82a9b12fa969f4e0f344660',·1,·'PmeGpuSettings::threadsPerAtom']381 ········['../structPmeGpuSettings.xhtml#a5e39fbddc82a9b12fa969f4e0f344660',·1,·'PmeGpuSettings::threadsPerAtom']
382 ····]],382 ····]],
383 ····['threadworkobjects_245',·['threadWorkObjects',·['../classgmx__reverse__top__t.xhtml#a98b8fa58dfc1f1b04cab29658676a3f4',·1,·'gmx_reverse_top_t']]],383 ····['threadworkobjects_245',·['threadWorkObjects',·['../classgmx__reverse__top__t.xhtml#a98b8fa58dfc1f1b04cab29658676a3f4',·1,·'gmx_reverse_top_t']]],
384 ····['threefry_2ecpp_246',·['threefry.cpp',·['../threefry_8cpp.xhtml',·1,·'']]],384 ····['threefry_2ecpp_246',·['threefry.cpp',·['../threefry_8cpp.xhtml',·1,·'']]],
385 ····['threefry_2eh_247',·['threefry.h',·['../threefry_8h.xhtml',·1,·'']]],385 ····['threefry_2eh_247',·['threefry.h',·['../threefry_8h.xhtml',·1,·'']]],
386 ····['threefry2x64_248',·['threefry2x64',·['../classgmx_1_1ThreeFry2x64.xhtml',·1,·'gmx::ThreeFry2x64&lt;·internalCounterBits·&gt;'],386 ····['threefry2x64_248',·['threefry2x64',·['../classgmx_1_1ThreeFry2x64.xhtml',·1,·'gmx::ThreeFry2x64&lt;·internalCounterBits·&gt;'],
387 ········['../classgmx_1_1ThreeFry2x64.xhtml#a5a79d409ea4010111bb67832d4a1badd',·1,·'gmx::ThreeFry2x64::ThreeFry2x64(uint64_t·key0,·uint64_t·key1)'], 
388 ········['../classgmx_1_1ThreeFry2x64.xhtml#add624a33176505ea1f48517616405c6c',·1,·'gmx::ThreeFry2x64::ThreeFry2x64(uint64_t·key0=0,·RandomDomain·domain=RandomDomain::Other)']387 ········['../classgmx_1_1ThreeFry2x64.xhtml#add624a33176505ea1f48517616405c6c',·1,·'gmx::ThreeFry2x64::ThreeFry2x64(uint64_t·key0=0,·RandomDomain·domain=RandomDomain::Other)'],
 388 ········['../classgmx_1_1ThreeFry2x64.xhtml#a5a79d409ea4010111bb67832d4a1badd',·1,·'gmx::ThreeFry2x64::ThreeFry2x64(uint64_t·key0,·uint64_t·key1)']
389 ····]],389 ····]],
390 ····['threefry2x64_3c_2016_20_3e_249',·['ThreeFry2x64&lt;·16·&gt;',·['../classgmx_1_1ThreeFry2x64.xhtml',·1,·'gmx']]],390 ····['threefry2x64_3c_2016_20_3e_249',·['ThreeFry2x64&lt;·16·&gt;',·['../classgmx_1_1ThreeFry2x64.xhtml',·1,·'gmx']]],
391 ····['threefry2x64fast_250',·['threefry2x64fast',·['../classgmx_1_1ThreeFry2x64Fast.xhtml#a63d848b7b9d7d979487cf570846658f7',·1,·'gmx::ThreeFry2x64Fast::ThreeFry2x64Fast(uint64_t·key0=0,·RandomDomain·domain=RandomDomain::Other)'],391 ····['threefry2x64fast_250',·['threefry2x64fast',·['../classgmx_1_1ThreeFry2x64Fast.xhtml#a63d848b7b9d7d979487cf570846658f7',·1,·'gmx::ThreeFry2x64Fast::ThreeFry2x64Fast(uint64_t·key0=0,·RandomDomain·domain=RandomDomain::Other)'],
392 ········['../classgmx_1_1ThreeFry2x64Fast.xhtml#a3e9704834e1ae8f8b382aa6229f52be7',·1,·'gmx::ThreeFry2x64Fast::ThreeFry2x64Fast(uint64_t·key0,·uint64_t·key1)'],392 ········['../classgmx_1_1ThreeFry2x64Fast.xhtml#a3e9704834e1ae8f8b382aa6229f52be7',·1,·'gmx::ThreeFry2x64Fast::ThreeFry2x64Fast(uint64_t·key0,·uint64_t·key1)'],
393 ········['../classgmx_1_1ThreeFry2x64Fast.xhtml',·1,·'gmx::ThreeFry2x64Fast&lt;·internalCounterBits·&gt;']393 ········['../classgmx_1_1ThreeFry2x64Fast.xhtml',·1,·'gmx::ThreeFry2x64Fast&lt;·internalCounterBits·&gt;']
394 ····]],394 ····]],
395 ····['threefry2x64general_251',·['threefry2x64general',·['../classgmx_1_1ThreeFry2x64General.xhtml#a1608daa8178161bd983afef6344f227f',·1,·'gmx::ThreeFry2x64General::ThreeFry2x64General(uint64_t·key0=0,·RandomDomain·domain=RandomDomain::Other)'],395 ····['threefry2x64general_251',·['threefry2x64general',·['../classgmx_1_1ThreeFry2x64General.xhtml#a1608daa8178161bd983afef6344f227f',·1,·'gmx::ThreeFry2x64General::ThreeFry2x64General(uint64_t·key0=0,·RandomDomain·domain=RandomDomain::Other)'],
Offset 399, 63 lines modifiedOffset 399, 63 lines modified
399 ····['threefry2x64general_3c_2013_2c_2064_20_3e_252',·['ThreeFry2x64General&lt;·13,·64·&gt;',·['../classgmx_1_1ThreeFry2x64General.xhtml',·1,·'gmx']]],399 ····['threefry2x64general_3c_2013_2c_2064_20_3e_252',·['ThreeFry2x64General&lt;·13,·64·&gt;',·['../classgmx_1_1ThreeFry2x64General.xhtml',·1,·'gmx']]],
400 ····['threefry2x64general_3c_2020_2c_2064_20_3e_253',·['ThreeFry2x64General&lt;·20,·64·&gt;',·['../classgmx_1_1ThreeFry2x64General.xhtml',·1,·'gmx']]],400 ····['threefry2x64general_3c_2020_2c_2064_20_3e_253',·['ThreeFry2x64General&lt;·20,·64·&gt;',·['../classgmx_1_1ThreeFry2x64General.xhtml',·1,·'gmx']]],
401 ····['threefry2x64general_3c_2020_2c_20internalcounterbits_20_3e_254',·['ThreeFry2x64General&lt;·20,·internalCounterBits·&gt;',·['../classgmx_1_1ThreeFry2x64General.xhtml',·1,·'gmx']]],401 ····['threefry2x64general_3c_2020_2c_20internalcounterbits_20_3e_254',·['ThreeFry2x64General&lt;·20,·internalCounterBits·&gt;',·['../classgmx_1_1ThreeFry2x64General.xhtml',·1,·'gmx']]],
402 ····['throwbecauseofmissingoutputfiles_255',·['throwBecauseOfMissingOutputFiles',·['../namespacegmx_1_1anonymous__namespace_02handlerestart_8cpp_03.xhtml#ac95056495eb623fbd460c721a64c1fcd',·1,·'gmx::anonymous_namespace{handlerestart.cpp}']]],402 ····['throwbecauseofmissingoutputfiles_255',·['throwBecauseOfMissingOutputFiles',·['../namespacegmx_1_1anonymous__namespace_02handlerestart_8cpp_03.xhtml#ac95056495eb623fbd460c721a64c1fcd',·1,·'gmx::anonymous_namespace{handlerestart.cpp}']]],
403 ····['throwerrorifindexoutofbounds_256',·['throwErrorIfIndexOutOfBounds',·['../namespacegmx_1_1anonymous__namespace_02gmx__covar_8cpp_03.xhtml#aa3b34b3a5be563f547b94e8c51d3ec13',·1,·'gmx::anonymous_namespace{gmx_covar.cpp}']]],403 ····['throwerrorifindexoutofbounds_256',·['throwErrorIfIndexOutOfBounds',·['../namespacegmx_1_1anonymous__namespace_02gmx__covar_8cpp_03.xhtml#aa3b34b3a5be563f547b94e8c51d3ec13',·1,·'gmx::anonymous_namespace{gmx_covar.cpp}']]],
404 ····['throwifnonemptyandonlywhitespace_257',·['throwIfNonEmptyAndOnlyWhitespace',·['../namespacegmx_1_1test.xhtml#a26d94b8bbe10b3fa39e5c03ef3833b4a',·1,·'gmx::test']]],404 ····['throwifnonemptyandonlywhitespace_257',·['throwIfNonEmptyAndOnlyWhitespace',·['../namespacegmx_1_1test.xhtml#a26d94b8bbe10b3fa39e5c03ef3833b4a',·1,·'gmx::test']]],
405 ····['throwifnotfound_258',·['throwIfNotFound',·['../classgmx_1_1DataFileOptions.xhtml#aff308586dddac14dadf6ddf3a1a85bd0',·1,·'gmx::DataFileOptions']]],405 ····['throwifnotfound_258',·['throwIfNotFound',·['../classgmx_1_1DataFileOptions.xhtml#aff308586dddac14dadf6ddf3a1a85bd0',·1,·'gmx::DataFileOptions']]],
 406 ····['throwlocation_259',·['throwlocation',·['../structgmx_1_1ThrowLocation.xhtml',·1,·'gmx::ThrowLocation'],
406 ····['throwlocation_259',·['throwlocation',·['../structgmx_1_1ThrowLocation.xhtml#aa8ff40747f544ad0419e8d27972d82d0',·1,·'gmx::ThrowLocation::ThrowLocation()'],407 ········['../structgmx_1_1ThrowLocation.xhtml#aa8ff40747f544ad0419e8d27972d82d0',·1,·'gmx::ThrowLocation::ThrowLocation()']
407 ········['../structgmx_1_1ThrowLocation.xhtml',·1,·'gmx::ThrowLocation'] 
408 ····]],408 ····]],
409 ····['throwunlessderivativeisconsistentwithfunction_260',·['throwunlessderivativeisconsistentwithfunction',·['../namespacegmx_1_1internal.xhtml#a71aba30ffd645096a2944c75870c2adc',·1,·'gmx::internal::throwUnlessDerivativeIsConsistentWithFunction(const·std::function&lt;·double(double)&gt;·&amp;function,·const·std::function&lt;·double(double)&gt;·&amp;derivative,·const·std::pair&lt;·real,·real·&gt;·&amp;range)'],409 ····['throwunlessderivativeisconsistentwithfunction_260',·['throwunlessderivativeisconsistentwithfunction',·['../namespacegmx_1_1internal.xhtml#a71aba30ffd645096a2944c75870c2adc',·1,·'gmx::internal::throwUnlessDerivativeIsConsistentWithFunction(const·std::function&lt;·double(double)&gt;·&amp;function,·const·std::function&lt;·double(double)&gt;·&amp;derivative,·const·std::pair&lt;·real,·real·&gt;·&amp;range)'],
410 ········['../namespacegmx_1_1internal.xhtml#a84d04970d8b90387337f316491ed1d73',·1,·'gmx::internal::throwUnlessDerivativeIsConsistentWithFunction(ArrayRef&lt;·const·double·&gt;·function,·ArrayRef&lt;·const·double·&gt;·derivative,·double·inputSpacing,·const·std::pair&lt;·real,·real·&gt;·&amp;range)']410 ········['../namespacegmx_1_1internal.xhtml#a84d04970d8b90387337f316491ed1d73',·1,·'gmx::internal::throwUnlessDerivativeIsConsistentWithFunction(ArrayRef&lt;·const·double·&gt;·function,·ArrayRef&lt;·const·double·&gt;·derivative,·double·inputSpacing,·const·std::pair&lt;·real,·real·&gt;·&amp;range)']
411 ····]],411 ····]],
412 ····['throwuponfailure_261',·['throwUponFailure',·['../namespacegmx_1_1anonymous__namespace_02devicetransfers__ocl_8cpp_03.xhtml#a8585858e6acfd82543296fc132f69648',·1,·'gmx::anonymous_namespace{devicetransfers_ocl.cpp}']]],412 ····['throwuponfailure_261',·['throwUponFailure',·['../namespacegmx_1_1anonymous__namespace_02devicetransfers__ocl_8cpp_03.xhtml#a8585858e6acfd82543296fc132f69648',·1,·'gmx::anonymous_namespace{devicetransfers_ocl.cpp}']]],
413 ····['tij_262',·['Tij',·['../structdf__history__t.xhtml#a0a8fc4c3313ee87881ca7ae86e2897b4',·1,·'df_history_t']]],413 ····['tij_262',·['Tij',·['../structdf__history__t.xhtml#a0a8fc4c3313ee87881ca7ae86e2897b4',·1,·'df_history_t']]],
414 ····['tij_5fempirical_263',·['Tij_empirical',·['../structdf__history__t.xhtml#a473ff22c2af8cad04a8670e3d1f33f1b',·1,·'df_history_t']]],414 ····['tij_5fempirical_263',·['Tij_empirical',·['../structdf__history__t.xhtml#a473ff22c2af8cad04a8670e3d1f33f1b',·1,·'df_history_t']]],
 415 ····['time_264',·['time',·['../group__module__modularsimulator.xhtml#ga835b14d2053259a125f4baf542e6c515',·1,·'gmx::Time'],
 416 ········['../classgmx_1_1TrajectoryFrame.xhtml#a1d0cbc9e958aebfe26f93b85d54825fb',·1,·'gmx::TrajectoryFrame::time()'],
415 ····['time_264',·['time',·['../classgmx_1_1EnergyAnalysisFrame.xhtml#afe731f5020c1836e00abd1301f59685c',·1,·'gmx::EnergyAnalysisFrame::time()'],417 ········['../classgmx_1_1EnergyAnalysisFrame.xhtml#afe731f5020c1836e00abd1301f59685c',·1,·'gmx::EnergyAnalysisFrame::time()'],
416 ········['../group__module__modularsimulator.xhtml#ga835b14d2053259a125f4baf542e6c515',·1,·'gmx::Time'], 
417 ········['../classgmx_1_1CorrelationGrid.xhtml#a2167d6647ab5a52f9f1000fcec4cf13daa76d4ef5f3f6a672bbfab2865563e530',·1,·'gmx::CorrelationGrid::Time'],418 ········['../classgmx_1_1CorrelationGrid.xhtml#a2167d6647ab5a52f9f1000fcec4cf13daa76d4ef5f3f6a672bbfab2865563e530',·1,·'gmx::CorrelationGrid::Time']
418 ········['../classgmx_1_1TrajectoryFrame.xhtml#a1d0cbc9e958aebfe26f93b85d54825fb',·1,·'gmx::TrajectoryFrame::time()'] 
419 ····]],419 ····]],
420 ····['time_5f_265',·['time_',·['../classgmx_1_1test_1_1anonymous__namespace_02energyoutput_8cpp_03_1_1EnergyOutputTest.xhtml#ae2b06e9fc97259c2209887de88947e7c',·1,·'gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest']]],420 ····['time_5f_265',·['time_',·['../classgmx_1_1test_1_1anonymous__namespace_02energyoutput_8cpp_03_1_1EnergyOutputTest.xhtml#ae2b06e9fc97259c2209887de88947e7c',·1,·'gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest']]],
421 ····['timeaveraginginitfactor_266',·['timeAveragingInitFactor',·['../structt__oriresdata.xhtml#ab09a3c184b2ad0b6e6e42c71a507a336',·1,·'t_oriresdata']]],421 ····['timeaveraginginitfactor_266',·['timeAveragingInitFactor',·['../structt__oriresdata.xhtml#ab09a3c184b2ad0b6e6e42c71a507a336',·1,·'t_oriresdata']]],
422 ····['timebegin_267',·['timeBegin',·['../classgmx_1_1EnergyTerm.xhtml#a5f595ce648a601cd0df03f2d4902f23d',·1,·'gmx::EnergyTerm']]],422 ····['timebegin_267',·['timeBegin',·['../classgmx_1_1EnergyTerm.xhtml#a5f595ce648a601cd0df03f2d4902f23d',·1,·'gmx::EnergyTerm']]],
423 ····['timecontrol_2ecpp_268',·['timecontrol.cpp',·['../tests_2timecontrol_8cpp.xhtml',·1,·'']]],423 ····['timecontrol_2ecpp_268',·['timecontrol.cpp',·['../tests_2timecontrol_8cpp.xhtml',·1,·'']]],
424 ····['timeend_269',·['timeEnd',·['../classgmx_1_1EnergyTerm.xhtml#af6e29e2d160ae4d901f10f65f8dc3542',·1,·'gmx::EnergyTerm']]],424 ····['timeend_269',·['timeEnd',·['../classgmx_1_1EnergyTerm.xhtml#af6e29e2d160ae4d901f10f65f8dc3542',·1,·'gmx::EnergyTerm']]],
425 ····['timeinterval_270',·['timeInterval',·['../classgmx_1_1EnergyDriftTracker.xhtml#a81594c537b3f94153a918d5e6686ca83',·1,·'gmx::EnergyDriftTracker']]],425 ····['timeinterval_270',·['timeInterval',·['../classgmx_1_1EnergyDriftTracker.xhtml#a81594c537b3f94153a918d5e6686ca83',·1,·'gmx::EnergyDriftTracker']]],
 426 ····['timeoptionscaler_271',·['timeoptionscaler',·['../classgmx_1_1anonymous__namespace_02timeunitmanager_8cpp_03_1_1TimeOptionScaler.xhtml',·1,·'gmx::anonymous_namespace{timeunitmanager.cpp}::TimeOptionScaler&lt;·FloatingPointOptionInfo·&gt;'],
426 ····['timeoptionscaler_271',·['timeoptionscaler',·['../classgmx_1_1anonymous__namespace_02timeunitmanager_8cpp_03_1_1TimeOptionScaler.xhtml#a25bf49d070bd4a0c520de6b2be0fc806',·1,·'gmx::anonymous_namespace{timeunitmanager.cpp}::TimeOptionScaler::TimeOptionScale[·...·truncated·by·diffoscope;·len:·6,·SHA:·e2de5c7fd3c3b92ff711d09b923c6155ce26999f36fa68adf95423fb94f1cf8d·...·]427 ········['../classgmx_1_1anonymous__namespace_02timeunitmanager_8cpp_03_1_1TimeOptionScaler.xhtml#a25bf49d070bd4a0c520de6b2be0fc806',·1,·'gmx::anonymous_namespace{timeunitmanager.cpp}::TimeOptionScaler::TimeOptionScaler()']
427 ········['../classgmx_1_1anonymous__namespace_02timeunitmanager_8cpp_03_1_1TimeOptionScaler.xhtml',·1,·'gmx::anonymous_namespace{timeunitmanager.cpp}::TimeOptionScaler&lt;·FloatingPointOptionInfo·&gt;'] 
428 ····]],428 ····]],
429 ····['timeperframeisset_272',·['timePerFrameIsSet',·['../structgmx__tng__trajectory.xhtml#af088af97fed6334da2f6a86bbb593332',·1,·'gmx_tng_trajectory']]],429 ····['timeperframeisset_272',·['timePerFrameIsSet',·['../structgmx__tng__trajectory.xhtml#af088af97fed6334da2f6a86bbb593332',·1,·'gmx_tng_trajectory']]],
430 ····['timers_273',·['timers',·['../structgmx_1_1NbnxmGpu.xhtml#a53d2110fa92330613bf2a97233dffee5',·1,·'gmx::NbnxmGpu']]],430 ····['timers_273',·['timers',·['../structgmx_1_1NbnxmGpu.xhtml#a53d2110fa92330613bf2a97233dffee5',·1,·'gmx::NbnxmGpu']]],
431 ····['timescalefactor_274',·['timeScaleFactor',·['../classgmx_1_1TimeUnitManager.xhtml#ab5c34c0650c9672bbd6a51f85ef774b8',·1,·'gmx::TimeUnitManager']]],431 ····['timescalefactor_274',·['timeScaleFactor',·['../classgmx_1_1TimeUnitManager.xhtml#ab5c34c0650c9672bbd6a51f85ef774b8',·1,·'gmx::TimeUnitManager']]],
432 ····['timesclose_275',·['timesClose',·['../namespacegmx.xhtml#a77fe4c27ecc56cc5e0448842a1218d7c',·1,·'gmx']]],432 ····['timesclose_275',·['timesClose',·['../namespacegmx.xhtml#a77fe4c27ecc56cc5e0448842a1218d7c',·1,·'gmx']]],
433 ····['timespan_276',·['timeSpan',·['../classgmx_1_1EnergyTerm.xhtml#a6fa21d577f34e76489343b9f15cb0f70',·1,·'gmx::EnergyTerm']]],433 ····['timespan_276',·['timeSpan',·['../classgmx_1_1EnergyTerm.xhtml#a6fa21d577f34e76489343b9f15cb0f70',·1,·'gmx::EnergyTerm']]],
434 ····['timestep_277',·['timestep',·['../structgmx_1_1TimeStep.xhtml',·1,·'gmx::TimeStep'], 
435 ········['../group__module__modularsimulator.xhtml#ga2f15ba7b08f5e9328be350927770ffe5',·1,·'gmx::TimeStep::TimeStep()'], 
436 ········['../structgmx_1_1test_1_1anonymous__namespace_02langevin_8cpp_03_1_1LangevinTestParameters.xhtml#a36e5c1428b87e64084c3f7c92db237d3',·1,·'gmx::test::anonymous_namespace{langevin.cpp}::LangevinTestParameters::timestep'],434 ····['timestep_277',·['timestep',·['../structgmx_1_1test_1_1anonymous__namespace_02langevin_8cpp_03_1_1LangevinTestParameters.xhtml#a36e5c1428b87e64084c3f7c92db237d3',·1,·'gmx::test::anonymous_namespace{langevin.cpp}::LangevinTestParameters::timestep'],
 435 ········['../structgmx_1_1TimeStep.xhtml',·1,·'gmx::TimeStep'],
437 ········['../structgmx_1_1test_1_1anonymous__namespace_02leapfrog_8cpp_03_1_1LeapFrogTestParameters.xhtml#a96082cd681f7abe75ac413d73f088426',·1,·'gmx::test::anonymous_namespace{leapfrog.cpp}::LeapFrogTestParameters::timestep']436 ········['../structgmx_1_1test_1_1anonymous__namespace_02leapfrog_8cpp_03_1_1LeapFrogTestParameters.xhtml#a96082cd681f7abe75ac413d73f088426',·1,·'gmx::test::anonymous_namespace{leapfrog.cpp}::LeapFrogTestParameters::timestep'],
 437 ········['../group__module__modularsimulator.xhtml#ga2f15ba7b08f5e9328be350927770ffe5',·1,·'gmx::TimeStep::TimeStep()']
438 ····]],438 ····]],
439 ····['timestepvalue_278',·['timeStepValue',·['../structgmx_1_1OutputRequirements.xhtml#aebab1037d0aa6cddf15d548934f89309',·1,·'gmx::OutputRequirements']]],439 ····['timestepvalue_278',·['timeStepValue',·['../structgmx_1_1OutputRequirements.xhtml#aebab1037d0aa6cddf15d548934f89309',·1,·'gmx::OutputRequirements']]],
440 ····['timeunit_279',·['timeunit',·['../group__group__publicapi.xhtml#ga72fb720465515c7593a1cde9f00534e7',·1,·'gmx::TimeUnit'],440 ····['timeunit_279',·['timeunit',·['../group__group__publicapi.xhtml#ga72fb720465515c7593a1cde9f00534e7',·1,·'gmx::TimeUnit'],
441 ········['../classgmx_1_1TrajectoryAnalysisSettings.xhtml#a6e22d7484f92e59d1a871a6b4881ed04',·1,·'gmx::TrajectoryAnalysisSettings::timeUnit()'],441 ········['../classgmx_1_1TrajectoryAnalysisSettings.xhtml#a6e22d7484f92e59d1a871a6b4881ed04',·1,·'gmx::TrajectoryAnalysisSettings::timeUnit()'],
442 ········['../classgmx_1_1TimeUnitBehavior.xhtml#a6fd0a3de212858a93d88e8e091c31495',·1,·'gmx::TimeUnitBehavior::timeUnit()'],442 ········['../classgmx_1_1TimeUnitBehavior.xhtml#a6fd0a3de212858a93d88e8e091c31495',·1,·'gmx::TimeUnitBehavior::timeUnit()'],
443 ········['../classgmx_1_1TimeUnitManager.xhtml#a8ca324ae8e6f263eeff34dfcf2a080c4',·1,·'gmx::TimeUnitManager::timeUnit()'],443 ········['../classgmx_1_1TimeUnitManager.xhtml#a8ca324ae8e6f263eeff34dfcf2a080c4',·1,·'gmx::TimeUnitManager::timeUnit()'],
444 ········['../classgmx_1_1AnalysisDataPlotSettings.xhtml#adfd907fed2ffa9d652bbd280522dc2da',·1,·'gmx::AnalysisDataPlotSettings::timeUnit()'],444 ········['../classgmx_1_1AnalysisDataPlotSettings.xhtml#adfd907fed2ffa9d652bbd280522dc2da',·1,·'gmx::AnalysisDataPlotSettings::timeUnit()'],
445 ········['../classgmx_1_1TrajectoryAnalysisSettings_1_1Impl.xhtml#ae309fcdaf33219b938454058745790df',·1,·'gmx::TrajectoryAnalysisSettings::Impl::timeUnit']445 ········['../classgmx_1_1TrajectoryAnalysisSettings_1_1Impl.xhtml#ae309fcdaf33219b938454058745790df',·1,·'gmx::TrajectoryAnalysisSettings::Impl::timeUnit']
446 ····]],446 ····]],
447 ····['timeunitasstring_280',·['timeUnitAsString',·['../classgmx_1_1TimeUnitManager.xhtml#a4f9fcf6d46d7b2d9d534f083b301c8ae',·1,·'gmx::TimeUnitManager']]],447 ····['timeunitasstring_280',·['timeUnitAsString',·['../classgmx_1_1TimeUnitManager.xhtml#a4f9fcf6d46d7b2d9d534f083b301c8ae',·1,·'gmx::TimeUnitManager']]],
448 ····['timeunitbehavior_281',·['TimeUnitBehavior',·['../classgmx_1_1TimeUnitBehavior.xhtml',·1,·'gmx']]],448 ····['timeunitbehavior_281',·['TimeUnitBehavior',·['../classgmx_1_1TimeUnitBehavior.xhtml',·1,·'gmx']]],
449 ····['timeunitmanager_282',·['timeunitmanager',·['../classgmx_1_1TimeUnitManager.xhtml',·1,·'gmx::TimeUnitManager'],449 ····['timeunitmanager_282',·['timeunitmanager',·['../classgmx_1_1TimeUnitManager.xhtml',·1,·'gmx::TimeUnitManager'],
450 ········['../classgmx_1_1TimeUnitManager.xhtml#a726dac3a92cf59e002165ba0db37f5d2',·1,·'gmx::TimeUnitManager::TimeUnitManager()'], 
451 ········['../classgmx_1_1TimeUnitManager.xhtml#ac1f08cab7f0f68500ffe6cbe94695164',·1,·'gmx::TimeUnitManager::TimeUnitManager(TimeUnit·unit)']450 ········['../classgmx_1_1TimeUnitManager.xhtml#ac1f08cab7f0f68500ffe6cbe94695164',·1,·'gmx::TimeUnitManager::TimeUnitManager(TimeUnit·unit)'],
 451 ········['../classgmx_1_1TimeUnitManager.xhtml#a726dac3a92cf59e002165ba0db37f5d2',·1,·'gmx::TimeUnitManager::TimeUnitManager()']
452 ····]],452 ····]],
453 ····['timeunitmanager_2ecpp_283',·['timeunitmanager.cpp',·['../timeunitmanager_8cpp.xhtml',·1,·'(Global·Namespace)'],453 ····['timeunitmanager_2ecpp_283',·['timeunitmanager.cpp',·['../tests_2timeunitmanager_8cpp.xhtml',·1,·'(Global·Namespace)'],
454 ········['../tests_2timeunitmanager_8cpp.xhtml',·1,·'(Global·Namespace)']454 ········['../timeunitmanager_8cpp.xhtml',·1,·'(Global·Namespace)']
455 ····]],455 ····]],
456 ····['timeunitmanager_2eh_284',·['timeunitmanager.h',·['../timeunitmanager_8h.xhtml',·1,·'']]],456 ····['timeunitmanager_2eh_284',·['timeunitmanager.h',·['../timeunitmanager_8h.xhtml',·1,·'']]],
457 ····['timevalue_285',·['timevalue',·['../classgmx_1_1FloatOption.xhtml#a1e9cd8943aa71dfc4ab26b4465b8f7c3',·1,·'gmx::FloatOption::timeValue()'],457 ····['timevalue_285',·['timevalue',·['../classgmx_1_1FloatOption.xhtml#a1e9cd8943aa71dfc4ab26b4465b8f7c3',·1,·'gmx::FloatOption::timeValue()'],
458 ········['../classgmx_1_1DoubleOption.xhtml#a430a6a0b3b7752ad235843e7da58b653',·1,·'gmx::DoubleOption::timeValue()']458 ········['../classgmx_1_1DoubleOption.xhtml#a430a6a0b3b7752ad235843e7da58b653',·1,·'gmx::DoubleOption::timeValue()']
459 ····]],459 ····]],
460 ····['timing_286',·['timing',·['../structgmx__wallclock__gpu__pme__t.xhtml#a607e29d4505f8c0bfafdd16acc013695',·1,·'gmx_wallclock_gpu_pme_t']]],460 ····['timing_286',·['timing',·['../structgmx__wallclock__gpu__pme__t.xhtml#a607e29d4505f8c0bfafdd16acc013695',·1,·'gmx_wallclock_gpu_pme_t']]],
461 ····['timing_2ecpp_287',·['timing.cpp',·['../timing_8cpp.xhtml',·1,·'']]],461 ····['timing_2ecpp_287',·['timing.cpp',·['../timing_8cpp.xhtml',·1,·'']]],
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32 ····['unionfind_2eh_18',·['unionfind.h',·['../unionfind_8h.xhtml',·1,·'']]],32 ····['unionfind_2eh_18',·['unionfind.h',·['../unionfind_8h.xhtml',·1,·'']]],
33 ····['unionfinder_19',·['UnionFinder',·['../classgmx_1_1UnionFinder.xhtml',·1,·'gmx']]],33 ····['unionfinder_19',·['UnionFinder',·['../classgmx_1_1UnionFinder.xhtml',·1,·'gmx']]],
34 ····['unique_5fcptr_20',·['unique_cptr',·['../namespacegmx.xhtml#a89d1da25b1e1f9331f1fe99b15072eac',·1,·'gmx']]],34 ····['unique_5fcptr_20',·['unique_cptr',·['../namespacegmx.xhtml#a89d1da25b1e1f9331f1fe99b15072eac',·1,·'gmx']]],
35 ····['unique_5fcptr_2eh_21',·['unique_cptr.h',·['../unique__cptr_8h.xhtml',·1,·'']]],35 ····['unique_5fcptr_2eh_21',·['unique_cptr.h',·['../unique__cptr_8h.xhtml',·1,·'']]],
36 ····['uniquedeviceid_22',·['uniquedeviceid',·['../device__management__common_8cpp.xhtml#ab7595ed839026b4d41d8eb72701a80eb',·1,·'uniqueDeviceId(const·DeviceInformation·&amp;deviceInfo):&#160;device_management_common.cpp'],36 ····['uniquedeviceid_22',·['uniquedeviceid',·['../device__management__common_8cpp.xhtml#ab7595ed839026b4d41d8eb72701a80eb',·1,·'uniqueDeviceId(const·DeviceInformation·&amp;deviceInfo):&#160;device_management_common.cpp'],
37 ········['../device__management_8h.xhtml#ab7595ed839026b4d41d8eb72701a80eb',·1,·'uniqueDeviceId(const·DeviceInformation·&amp;deviceInfo):&#160;device_management_common.cpp']37 ········['../device__management_8h.xhtml#ab7595ed839026b4d41d8eb72701a80eb',·1,·'uniqueDeviceId(const·DeviceInformation·&amp;deviceInfo):&#160;device_management_common.cpp']
38 ····]],38 ····]],
 39 ····['unit_23',·['unit',·['../structUmbrellaOptions.xhtml#ae5d2dca38270c084eb3386aa26b9b959',·1,·'UmbrellaOptions::unit'],
39 ····['unit_23',·['unit',·['../classgmx_1_1EnergyTerm.xhtml#aef5ad0000c2fbbc74c57f0b5e0ddb409',·1,·'gmx::EnergyTerm::unit()'],40 ········['../classgmx_1_1EnergyTerm.xhtml#aef5ad0000c2fbbc74c57f0b5e0ddb409',·1,·'gmx::EnergyTerm::unit()']
40 ········['../structUmbrellaOptions.xhtml#ae5d2dca38270c084eb3386aa26b9b959',·1,·'UmbrellaOptions::unit'] 
41 ····]],41 ····]],
42 ····['unitcellinfo_24',·['unitcellinfo',·['../structUnitCellInfo.xhtml',·1,·'UnitCellInfo'], 
43 ········['../structUnitCellInfo.xhtml#a9d3636ef8212130c876d2cbd16dcc69a',·1,·'UnitCellInfo::UnitCellInfo()']42 ····['unitcellinfo_24',·['unitcellinfo',·['../structUnitCellInfo.xhtml#a9d3636ef8212130c876d2cbd16dcc69a',·1,·'UnitCellInfo::UnitCellInfo()'],
 43 ········['../structUnitCellInfo.xhtml',·1,·'UnitCellInfo']
44 ····]],44 ····]],
45 ····['unitcelliscompact_25',·['UnitCellIsCompact',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9ad4d785ddf0c77e7b697efd2b5ec376e1',·1,·'gmx']]],45 ····['unitcelliscompact_25',·['UnitCellIsCompact',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9ad4d785ddf0c77e7b697efd2b5ec376e1',·1,·'gmx']]],
46 ····['unitcellisrectangular_26',·['UnitCellIsRectangular',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a8e7bda81ce54b8cf90c3b856c83e7d9f',·1,·'gmx']]],46 ····['unitcellisrectangular_26',·['UnitCellIsRectangular',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a8e7bda81ce54b8cf90c3b856c83e7d9f',·1,·'gmx']]],
47 ····['unitcellistriclinic_27',·['UnitCellIsTriclinic',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a99285c8187fb87e756f127435045dc3f',·1,·'gmx']]],47 ····['unitcellistriclinic_27',·['UnitCellIsTriclinic',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a99285c8187fb87e756f127435045dc3f',·1,·'gmx']]],
48 ····['unitcelltype_28',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]],48 ····['unitcelltype_28',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]],
49 ····['unitcelltypenames_29',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]],49 ····['unitcelltypenames_29',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]],
50 ····['unittest_5fmain_2ecpp_30',·['unittest_main.cpp',·['../unittest__main_8cpp.xhtml',·1,·'']]],50 ····['unittest_5fmain_2ecpp_30',·['unittest_main.cpp',·['../unittest__main_8cpp.xhtml',·1,·'']]],
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308 ····['addsubtopic_191',·['addSubTopic',·['../classgmx_1_1AbstractCompositeHelpTopic.xhtml#affad73510b63efeef76648dc3b01a42c',·1,·'gmx::AbstractCompositeHelpTopic']]],308 ····['addsubtopic_191',·['addSubTopic',·['../classgmx_1_1AbstractCompositeHelpTopic.xhtml#affad73510b63efeef76648dc3b01a42c',·1,·'gmx::AbstractCompositeHelpTopic']]],
309 ····['addsymbol_192',·['addSymbol',·['../classgmx_1_1SelectionParserSymbolTable_1_1Impl.xhtml#a33be6fa2bc49586d38115cc1207b082b',·1,·'gmx::SelectionParserSymbolTable::Impl']]],309 ····['addsymbol_192',·['addSymbol',·['../classgmx_1_1SelectionParserSymbolTable_1_1Impl.xhtml#a33be6fa2bc49586d38115cc1207b082b',·1,·'gmx::SelectionParserSymbolTable::Impl']]],
310 ····['addtargetfile_193',·['addTargetFile',·['../classgmx_1_1LoggerBuilder.xhtml#a3919fdf863ed21af77bc630817316708',·1,·'gmx::LoggerBuilder']]],310 ····['addtargetfile_193',·['addTargetFile',·['../classgmx_1_1LoggerBuilder.xhtml#a3919fdf863ed21af77bc630817316708',·1,·'gmx::LoggerBuilder']]],
311 ····['addtargetstream_194',·['addTargetStream',·['../classgmx_1_1LoggerBuilder.xhtml#a2cc988912261dca9bd2a3ab061aeb75b',·1,·'gmx::LoggerBuilder']]],311 ····['addtargetstream_194',·['addTargetStream',·['../classgmx_1_1LoggerBuilder.xhtml#a2cc988912261dca9bd2a3ab061aeb75b',·1,·'gmx::LoggerBuilder']]],
312 ····['addtimeunitoption_195',·['addTimeUnitOption',·['../classgmx_1_1TimeUnitBehavior.xhtml#a290dbcc173e7b2501b8c156cce6a4a6e',·1,·'gmx::TimeUnitBehavior']]],312 ····['addtimeunitoption_195',·['addTimeUnitOption',·['../classgmx_1_1TimeUnitBehavior.xhtml#a290dbcc173e7b2501b8c156cce6a4a6e',·1,·'gmx::TimeUnitBehavior']]],
313 ····['addtoconstraintvirial_196',·['addToConstraintVirial',·['../classgmx_1_1EnergyData.xhtml#a212239353ae6a83ca8281ffbb8a837ed',·1,·'gmx::EnergyData']]],313 ····['addtoconstraintvirial_196',·['addToConstraintVirial',·['../classgmx_1_1EnergyData.xhtml#a212239353ae6a83ca8281ffbb8a837ed',·1,·'gmx::EnergyData']]],
314 ····['addtoforcevirial_197',·['addToForceVirial',·['../classgmx_1_1EnergyData.xhtml#aa8e138642068ee1d5554f92f499c2454',·1,·'gmx::EnergyData']]],314 ····['addtoforcevirial_197',·['addToForceVirial',·['../classgmx_1_1EnergyData.xhtml#aa8e138642068ee1d5554f92f499c2454',·1,·'gmx::EnergyData']]],
 315 ····['addtopic_198',·['addtopic',·['../classgmx_1_1CommandLineHelpModule.xhtml#ab0dbba082d0ac464390e2c7b5516de14',·1,·'gmx::CommandLineHelpModule::addTopic()'],
315 ····['addtopic_198',·['addtopic',·['../classgmx_1_1anonymous__namespace_02cmdlinehelpmodule_8cpp_03_1_1RootHelpTopic.xhtml#ac7b324c77d502f9dca2921f09252a36f',·1,·'gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::RootHelpTopic::addTopic()'],316 ········['../classgmx_1_1anonymous__namespace_02cmdlinehelpmodule_8cpp_03_1_1RootHelpTopic.xhtml#ac7b324c77d502f9dca2921f09252a36f',·1,·'gmx::anonymous_namespace{cmdlinehelpmodule.cpp}::RootHelpTopic::addTopic()']
316 ········['../classgmx_1_1CommandLineHelpModule.xhtml#ab0dbba082d0ac464390e2c7b5516de14',·1,·'gmx::CommandLineHelpModule::addTopic()'] 
317 ····]],317 ····]],
318 ····['addtopology_199',·['addTopology',·['../classgmx_1_1test_1_1ModuleTest.xhtml#af108112269f3d6d5200101613cae4f33',·1,·'gmx::test::ModuleTest']]],318 ····['addtopology_199',·['addTopology',·['../classgmx_1_1test_1_1ModuleTest.xhtml#af108112269f3d6d5200101613cae4f33',·1,·'gmx::test::ModuleTest']]],
319 ····['addtospec_200',·['addToSpec',·['../classgmx_1_1RestraintManager.xhtml#a60fb112c33e7414b379c347bc986f1d3',·1,·'gmx::RestraintManager']]],319 ····['addtospec_200',·['addToSpec',·['../classgmx_1_1RestraintManager.xhtml#a60fb112c33e7414b379c347bc986f1d3',·1,·'gmx::RestraintManager']]],
320 ····['addtype_201',·['addType',·['../classPreprocessingAtomTypes.xhtml#a506b9036e6b56624013108eccb6ec29d',·1,·'PreprocessingAtomTypes']]],320 ····['addtype_201',·['addType',·['../classPreprocessingAtomTypes.xhtml#a506b9036e6b56624013108eccb6ec29d',·1,·'PreprocessingAtomTypes']]],
321 ····['addulps_202',·['addUlps',·['../group__module__testutils.xhtml#gaad10037356014d0ba6ab4599f38ca3f4',·1,·'anonymous_namespace{testasserts_tests.cpp}']]],321 ····['addulps_202',·['addUlps',·['../group__module__testutils.xhtml#gaad10037356014d0ba6ab4599f38ca3f4',·1,·'anonymous_namespace{testasserts_tests.cpp}']]],
322 ····['adduniformarray_203',·['adduniformarray',·['../classgmx_1_1KeyValueTreeObjectBuilder.xhtml#a3e0b162bc2ac164597a55ba713d374ea',·1,·'gmx::KeyValueTreeObjectBuilder::addUniformArray(const·std::string·&amp;key,·std::initializer_list&lt;·T·&gt;·values)'],322 ····['adduniformarray_203',·['adduniformarray',·['../classgmx_1_1KeyValueTreeObjectBuilder.xhtml#a3e0b162bc2ac164597a55ba713d374ea',·1,·'gmx::KeyValueTreeObjectBuilder::addUniformArray(const·std::string·&amp;key,·std::initializer_list&lt;·T·&gt;·values)'],
323 ········['../classgmx_1_1KeyValueTreeObjectBuilder.xhtml#ad1442071b735266a82ee1237dc5a2573',·1,·'gmx::KeyValueTreeObjectBuilder::addUniformArray(const·std::string·&amp;key)']323 ········['../classgmx_1_1KeyValueTreeObjectBuilder.xhtml#ad1442071b735266a82ee1237dc5a2573',·1,·'gmx::KeyValueTreeObjectBuilder::addUniformArray(const·std::string·&amp;key)']
Offset 471, 28 lines modifiedOffset 471, 28 lines modified
471 ········['../page_analysisnbsearch.xhtml',·1,·'Neighborhood·search·for·analysis·tools']471 ········['../page_analysisnbsearch.xhtml',·1,·'Neighborhood·search·for·analysis·tools']
472 ····]],472 ····]],
473 ····['analysis_20trajectoryanalysis_289',·['Framework·for·Trajectory·Analysis·(trajectoryanalysis)',·['../group__module__trajectoryanalysis.xhtml',·1,·'']]],473 ····['analysis_20trajectoryanalysis_289',·['Framework·for·Trajectory·Analysis·(trajectoryanalysis)',·['../group__module__trajectoryanalysis.xhtml',·1,·'']]],
474 ····['analysisarraydata_290',·['analysisarraydata',·['../classgmx_1_1AnalysisArrayData.xhtml#ab1303625a9e842af1ea5ceeaddabc41d',·1,·'gmx::AnalysisArrayData::AnalysisArrayData()'],474 ····['analysisarraydata_290',·['analysisarraydata',·['../classgmx_1_1AnalysisArrayData.xhtml#ab1303625a9e842af1ea5ceeaddabc41d',·1,·'gmx::AnalysisArrayData::AnalysisArrayData()'],
475 ········['../classgmx_1_1AnalysisArrayData.xhtml',·1,·'gmx::AnalysisArrayData']475 ········['../classgmx_1_1AnalysisArrayData.xhtml',·1,·'gmx::AnalysisArrayData']
476 ····]],476 ····]],
477 ····['analysisarraydatatest_291',·['AnalysisArrayDataTest',·['../namespacegmx_1_1test_1_1anonymous__namespace_02arraydata_8cpp_03.xhtml#a9ffdf922c2c9c9dcc03ee31a87b6c0da',·1,·'gmx::test::anonymous_namespace{arraydata.cpp}']]],477 ····['analysisarraydatatest_291',·['AnalysisArrayDataTest',·['../namespacegmx_1_1test_1_1anonymous__namespace_02arraydata_8cpp_03.xhtml#a9ffdf922c2c9c9dcc03ee31a87b6c0da',·1,·'gmx::test::anonymous_namespace{arraydata.cpp}']]],
478 ····['analysisdata_292',·['analysisdata',·['../classgmx_1_1AnalysisData.xhtml#afde1676e7c3d3fc4dedbd441063b281f',·1,·'gmx::AnalysisData::AnalysisData()'],478 ····['analysisdata_292',·['analysisdata',·['../classgmx_1_1AnalysisData.xhtml',·1,·'gmx::AnalysisData'],
479 ········['../classgmx_1_1AnalysisDataHandle.xhtml#ad7fd203415edf04f027b89dfd0178533',·1,·'gmx::AnalysisDataHandle::AnalysisData'],479 ········['../classgmx_1_1AnalysisDataHandle.xhtml#ad7fd203415edf04f027b89dfd0178533',·1,·'gmx::AnalysisDataHandle::AnalysisData'],
480 ········['../classgmx_1_1AnalysisData.xhtml',·1,·'gmx::AnalysisData'],480 ········['../classgmx_1_1AnalysisData.xhtml#afde1676e7c3d3fc4dedbd441063b281f',·1,·'gmx::AnalysisData::AnalysisData()'],
481 ········['../group__module__analysisdata.xhtml',·1,·'Parallelizable·Handling·of·Output·Data·(analysisdata)']481 ········['../group__module__analysisdata.xhtml',·1,·'Parallelizable·Handling·of·Output·Data·(analysisdata)']
482 ····]],482 ····]],
483 ····['analysisdata_2ecpp_293',·['analysisdata.cpp',·['../analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)'],483 ····['analysisdata_2ecpp_293',·['analysisdata.cpp',·['../analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)'],
484 ········['../tests_2analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)']484 ········['../tests_2analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)']
485 ····]],485 ····]],
486 ····['analysisdata_2eh_294',·['analysisdata.h',·['../analysisdata_8h.xhtml',·1,·'']]],486 ····['analysisdata_2eh_294',·['analysisdata.h',·['../analysisdata_8h.xhtml',·1,·'']]],
487 ····['analysisdataaveragemodule_295',·['AnalysisDataAverageModule',·['../classgmx_1_1AnalysisDataAverageModule.xhtml',·1,·'gmx']]],487 ····['analysisdataaveragemodule_295',·['AnalysisDataAverageModule',·['../classgmx_1_1AnalysisDataAverageModule.xhtml',·1,·'gmx']]],
488 ····['analysisdataaveragemodulepointer_296',·['AnalysisDataAverageModulePointer',·['../namespacegmx.xhtml#a87e4f5152c736da50dd59275f423a7a3',·1,·'gmx']]],488 ····['analysisdataaveragemodulepointer_296',·['AnalysisDataAverageModulePointer',·['../namespacegmx.xhtml#a87e4f5152c736da50dd59275f423a7a3',·1,·'gmx']]],
489 ····['analysisdatabinaveragemodule_297',·['analysisdatabinaveragemodule',·['../classgmx_1_1AnalysisDataBinAverageModule.xhtml#a6912a0b42cf2d67d73659b8f2d4a5997',·1,·'gmx::AnalysisDataBinAverageModule::AnalysisDataBinAverageModule()'],489 ····['analysisdatabinaveragemodule_297',·['analysisdatabinaveragemodule',·['../classgmx_1_1AnalysisDataBinAverageModule.xhtml',·1,·'gmx::AnalysisDataBinAverageModule'],
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490 ········['../classgmx_1_1AnalysisDataBinAverageModule.xhtml#ae68db8d9759911b2a903e2918c471771',·1,·'gmx::AnalysisDataBinAverageModule::AnalysisDataBinAverageModule(const·AnalysisHistogramSettings·&amp;settings)'],491 ········['../classgmx_1_1AnalysisDataBinAverageModule.xhtml#ae68db8d9759911b2a903e2918c471771',·1,·'gmx::AnalysisDataBinAverageModule::AnalysisDataBinAverageModule(const·AnalysisHistogramSettings·&amp;settings)']
491 ········['../classgmx_1_1AnalysisDataBinAverageModule.xhtml',·1,·'gmx::AnalysisDataBinAverageModule'] 
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495 ····['analysisdatadisplacementmodulepointer_300',·['AnalysisDataDisplacementModulePointer',·['../namespacegmx.xhtml#aa5dd79fb2cd906b55b386b64084543b9',·1,·'gmx']]],495 ····['analysisdatadisplacementmodulepointer_300',·['AnalysisDataDisplacementModulePointer',·['../namespacegmx.xhtml#aa5dd79fb2cd906b55b386b64084543b9',·1,·'gmx']]],
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497 ····['analysisdataframeaveragemodulepointer_302',·['AnalysisDataFrameAverageModulePointer',·['../namespacegmx.xhtml#ad580f7f69fb3536c9cba722587e77e49',·1,·'gmx']]],497 ····['analysisdataframeaveragemodulepointer_302',·['AnalysisDataFrameAverageModulePointer',·['../namespacegmx.xhtml#ad580f7f69fb3536c9cba722587e77e49',·1,·'gmx']]],
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104 ········['../classgmx_1_1BasicVector.xhtml#a35f9473fbd9dbc5122c077913b768309',·1,·'gmx::BasicVector::BasicVector(ValueType·x,·ValueType·y,·ValueType·z)'],105 ········['../classgmx_1_1BasicVector.xhtml#a35f9473fbd9dbc5122c077913b768309',·1,·'gmx::BasicVector::BasicVector(ValueType·x,·ValueType·y,·ValueType·z)'],
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253 ····['binit_5f_150',·['bInit_',·['../classgmx_1_1PositionCalculationCollection_1_1Impl.xhtml#a60024cd4d6d109f21d8c30665521fd5a',·1,·'gmx::PositionCalculationCollection::Impl']]],253 ····['binit_5f_150',·['bInit_',·['../classgmx_1_1PositionCalculationCollection_1_1Impl.xhtml#a60024cd4d6d109f21d8c30665521fd5a',·1,·'gmx::PositionCalculationCollection::Impl']]],
254 ····['binitpotbyintegration_151',·['bInitPotByIntegration',·['../structUmbrellaOptions.xhtml#a300317da5dd0f69c7c01e47cc81e00d7',·1,·'UmbrellaOptions']]],254 ····['binitpotbyintegration_151',·['bInitPotByIntegration',·['../structUmbrellaOptions.xhtml#a300317da5dd0f69c7c01e47cc81e00d7',·1,·'UmbrellaOptions']]],
255 ····['binputcheckingdisabled_5f_152',·['bInputCheckingDisabled_',·['../classgmx_1_1FileNameOptionManager_1_1Impl.xhtml#a7cd2a4a1fd3c7e2d716acef2c8e6f871',·1,·'gmx::FileNameOptionManager::Impl']]],255 ····['binputcheckingdisabled_5f_152',·['bInputCheckingDisabled_',·['../classgmx_1_1FileNameOptionManager_1_1Impl.xhtml#a7cd2a4a1fd3c7e2d716acef2c8e6f871',·1,·'gmx::FileNameOptionManager::Impl']]],
256 ····['bins_153',·['bins',·['../classgmx_1_1TestParticleInsertion.xhtml#aea7501db300437f517614fdbac3a381d',·1,·'gmx::TestParticleInsertion::bins()'],256 ····['bins_153',·['bins',·['../classgmx_1_1TestParticleInsertion.xhtml#aea7501db300437f517614fdbac3a381d',·1,·'gmx::TestParticleInsertion::bins()'],
257 ········['../structUmbrellaOptions.xhtml#a6e4eac2a452db3b73109094936d921a9',·1,·'UmbrellaOptions::bins']257 ········['../structUmbrellaOptions.xhtml#a6e4eac2a452db3b73109094936d921a9',·1,·'UmbrellaOptions::bins']
258 ····]],258 ····]],
259 ····['binuse_5f_154',·['bInUse_',·['../classgmx_1_1test_1_1internal_1_1TestReferenceDataImpl.xhtml#a4ec16f5bca468bf76020234d9f2db510',·1,·'gmx::test::internal::TestReferenceDataImpl']]],259 ····['binuse_5f_154',·['bInUse_',·['../classgmx_1_1test_1_1internal_1_1TestReferenceDataImpl.xhtml#a4ec16f5bca468bf76020234d9f2db510',·1,·'gmx::test::internal::TestReferenceDataImpl']]],
 260 ····['binwidth_155',·['binwidth',·['../classgmx_1_1AnalysisHistogramSettings.xhtml#af927ef5703f2e7aceac66d8bf912b1e9',·1,·'gmx::AnalysisHistogramSettings::binWidth()'],
260 ····['binwidth_155',·['binwidth',·['../classgmx_1_1AnalysisHistogramSettingsInitializer.xhtml#add437ddf91989778860826153c6b636c',·1,·'gmx::AnalysisHistogramSettingsInitializer::binWidth()'],261 ········['../classgmx_1_1AnalysisHistogramSettingsInitializer.xhtml#add437ddf91989778860826153c6b636c',·1,·'gmx::AnalysisHistogramSettingsInitializer::binWidth()']
261 ········['../classgmx_1_1AnalysisHistogramSettings.xhtml#af927ef5703f2e7aceac66d8bf912b1e9',·1,·'gmx::AnalysisHistogramSettings::binWidth()'] 
262 ····]],262 ····]],
263 ····['bir_156',·['bIr',·['../structTpxFileHeader.xhtml#a2c041ee5b81c0e8056c7ad6f848c24b8',·1,·'TpxFileHeader']]],263 ····['bir_156',·['bIr',·['../structTpxFileHeader.xhtml#a2c041ee5b81c0e8056c7ad6f848c24b8',·1,·'TpxFileHeader']]],
264 ····['bitmask_2eh_157',·['bitmask.h',·['../include_2gromacs_2utility_2bitmask_8h.xhtml',·1,·'(Global·Namespace)'],264 ····['bitmask_2eh_157',·['bitmask.h',·['../tests_2bitmask_8h.xhtml',·1,·'(Global·Namespace)'],
265 ········['../tests_2bitmask_8h.xhtml',·1,·'(Global·Namespace)']265 ········['../include_2gromacs_2utility_2bitmask_8h.xhtml',·1,·'(Global·Namespace)']
266 ····]],266 ····]],
267 ····['bitmask_5fclassname_158',·['BITMASK_CLASSNAME',·['../tests_2bitmask_8h.xhtml#ae98c2c3acbcaf4cebce8326e3ad682cb',·1,·'bitmask.h']]],267 ····['bitmask_5fclassname_158',·['BITMASK_CLASSNAME',·['../tests_2bitmask_8h.xhtml#ae98c2c3acbcaf4cebce8326e3ad682cb',·1,·'bitmask.h']]],
268 ····['bitmask_5fclassname_5f_159',·['BITMASK_CLASSNAME_',·['../tests_2bitmask_8h.xhtml#aa4a16ee87fdc3d8eec077e2ee58cfd8c',·1,·'bitmask.h']]],268 ····['bitmask_5fclassname_5f_159',·['BITMASK_CLASSNAME_',·['../tests_2bitmask_8h.xhtml#aa4a16ee87fdc3d8eec077e2ee58cfd8c',·1,·'bitmask.h']]],
269 ····['bitmask_5fclear_160',·['bitmask_clear',·['../include_2gromacs_2utility_2bitmask_8h.xhtml#a18f53c59e5ef4fe3f1b1a649da01fd0a',·1,·'bitmask.h']]],269 ····['bitmask_5fclear_160',·['bitmask_clear',·['../include_2gromacs_2utility_2bitmask_8h.xhtml#a18f53c59e5ef4fe3f1b1a649da01fd0a',·1,·'bitmask.h']]],
270 ····['bitmask_5finit_5fbit_161',·['bitmask_init_bit',·['../include_2gromacs_2utility_2bitmask_8h.xhtml#ac5dd57fcf554ecadf7f009008e33be8b',·1,·'bitmask.h']]],270 ····['bitmask_5finit_5fbit_161',·['bitmask_init_bit',·['../include_2gromacs_2utility_2bitmask_8h.xhtml#ac5dd57fcf554ecadf7f009008e33be8b',·1,·'bitmask.h']]],
271 ····['bitmask_5finit_5flow_5fbits_162',·['bitmask_init_low_bits',·['../include_2gromacs_2utility_2bitmask_8h.xhtml#a7ff662ac524c3f80cfa909c40e337eec',·1,·'bitmask.h']]],271 ····['bitmask_5finit_5flow_5fbits_162',·['bitmask_init_low_bits',·['../include_2gromacs_2utility_2bitmask_8h.xhtml#a7ff662ac524c3f80cfa909c40e337eec',·1,·'bitmask.h']]],
272 ····['bitmask_5fis_5fdisjoint_163',·['bitmask_is_disjoint',·['../include_2gromacs_2utility_2bitmask_8h.xhtml#a8f44d71faaedd70fca3d13deeb28e184',·1,·'bitmask.h']]],272 ····['bitmask_5fis_5fdisjoint_163',·['bitmask_is_disjoint',·['../include_2gromacs_2utility_2bitmask_8h.xhtml#a8f44d71faaedd70fca3d13deeb28e184',·1,·'bitmask.h']]],
Offset 281, 23 lines modifiedOffset 281, 23 lines modified
281 ····['bitsone_172',·['bitsOne',·['../namespacegmx_1_1test_1_1anonymous__namespace_02threefry_8cpp_03.xhtml#ac28af5f36df89ee6ff045d87e2063912',·1,·'gmx::test::anonymous_namespace{threefry.cpp}']]],281 ····['bitsone_172',·['bitsOne',·['../namespacegmx_1_1test_1_1anonymous__namespace_02threefry_8cpp_03.xhtml#ac28af5f36df89ee6ff045d87e2063912',·1,·'gmx::test::anonymous_namespace{threefry.cpp}']]],
282 ····['bitspi_173',·['bitsPi',·['../namespacegmx_1_1test_1_1anonymous__namespace_02threefry_8cpp_03.xhtml#aef23c846a68baade7e8b1f458e60e031',·1,·'gmx::test::anonymous_namespace{threefry.cpp}']]],282 ····['bitspi_173',·['bitsPi',·['../namespacegmx_1_1test_1_1anonymous__namespace_02threefry_8cpp_03.xhtml#aef23c846a68baade7e8b1f458e60e031',·1,·'gmx::test::anonymous_namespace{threefry.cpp}']]],
283 ····['bitszero_174',·['bitsZero',·['../namespacegmx_1_1test_1_1anonymous__namespace_02threefry_8cpp_03.xhtml#ad07248f1818be5c6407ebe56636aa8ee',·1,·'gmx::test::anonymous_namespace{threefry.cpp}']]],283 ····['bitszero_174',·['bitsZero',·['../namespacegmx_1_1test_1_1anonymous__namespace_02threefry_8cpp_03.xhtml#ad07248f1818be5c6407ebe56636aa8ee',·1,·'gmx::test::anonymous_namespace{threefry.cpp}']]],
284 ····['bkeepallgenerateddihedrals_175',·['bKeepAllGeneratedDihedrals',·['../structPreprocessResidue.xhtml#ac6bf4b23eb4841aeba900478f82c7469',·1,·'PreprocessResidue']]],284 ····['bkeepallgenerateddihedrals_175',·['bKeepAllGeneratedDihedrals',·['../structPreprocessResidue.xhtml#ac6bf4b23eb4841aeba900478f82c7469',·1,·'PreprocessResidue']]],
285 ····['blbnb_176',·['blbnb',·['../classgmx_1_1Lincs.xhtml#a521d2ee5435381e5c5a4525de63766d6',·1,·'gmx::Lincs']]],285 ····['blbnb_176',·['blbnb',·['../classgmx_1_1Lincs.xhtml#a521d2ee5435381e5c5a4525de63766d6',·1,·'gmx::Lincs']]],
286 ····['blc_177',·['blc',·['../classgmx_1_1Lincs.xhtml#a0869b658ede5d956b5d47cfc5ea9b55f',·1,·'gmx::Lincs']]],286 ····['blc_177',·['blc',·['../classgmx_1_1Lincs.xhtml#a0869b658ede5d956b5d47cfc5ea9b55f',·1,·'gmx::Lincs']]],
287 ····['blc1_178',·['blc1',·['../classgmx_1_1Lincs.xhtml#a348d78d1c99366e604a2bfb689f0b1fc',·1,·'gmx::Lincs']]],287 ····['blc1_178',·['blc1',·['../classgmx_1_1Lincs.xhtml#a348d78d1c99366e604a2bfb689f0b1fc',·1,·'gmx::Lincs']]],
288 ····['blend_179',·['blend',·['../group__module__simd.xhtml#ga443be80edc7822ae0582bc5a4d4da34c',·1,·'gmx::blend(SimdFloat·a,·SimdFloat·b,·SimdFBool·sel)'], 
289 ········['../group__module__simd.xhtml#gafa1d01238ab3305ab17f301f73eaeaa1',·1,·'gmx::blend(Simd4Double·a,·Simd4Double·b,·Simd4DBool·sel)'], 
290 ········['../group__module__simd.xhtml#ga9a3c7493047defc21bf934ca9fc39476',·1,·'gmx::blend(Simd4Float·a,·Simd4Float·b,·Simd4FBool·sel)'], 
291 ········['../group__module__simd.xhtml#gaa089539a35e39d68f6c8b40421e0a68e',·1,·'gmx::blend(SimdDouble·a,·SimdDouble·b,·SimdDBool·sel)'], 
292 ········['../group__module__simd.xhtml#ga897cd563974628f57a983656bc4f0be5',·1,·'gmx::blend(SimdDInt32·a,·SimdDInt32·b,·SimdDIBool·sel)'], 
293 ········['../namespacegmx.xhtml#a97f9e21174d44695b53626648515c4b4',·1,·'gmx::blend(float·a,·float·b,·bool·sel)'],288 ····['blend_179',·['blend',·['../namespacegmx.xhtml#a97f9e21174d44695b53626648515c4b4',·1,·'gmx::blend(float·a,·float·b,·bool·sel)'],
294 ········['../namespacegmx.xhtml#a174859a095e84b4a4ee3214547fe8f13',·1,·'gmx::blend(std::int32_t·a,·std::int32_t·b,·bool·sel)'], 
295 ········['../namespacegmx.xhtml#a069393b3673bd0df6aefc16f8379cf96',·1,·'gmx::blend(double·a,·double·b,·bool·sel)'],289 ········['../namespacegmx.xhtml#a069393b3673bd0df6aefc16f8379cf96',·1,·'gmx::blend(double·a,·double·b,·bool·sel)'],
296 ········['../group__module__simd.xhtml#ga3f3f322cbf3a7d646003849046028f65',·1,·'gmx::blend(SimdFInt32·a,·SimdFInt32·b,·SimdFIBool·sel)']290 ········['../group__module__simd.xhtml#ga3f3f322cbf3a7d646003849046028f65',·1,·'gmx::blend(SimdFInt32·a,·SimdFInt32·b,·SimdFIBool·sel)'],
 291 ········['../group__module__simd.xhtml#ga443be80edc7822ae0582bc5a4d4da34c',·1,·'gmx::blend(SimdFloat·a,·SimdFloat·b,·SimdFBool·sel)'],
 292 ········['../namespacegmx.xhtml#a174859a095e84b4a4ee3214547fe8f13',·1,·'gmx::blend(std::int32_t·a,·std::int32_t·b,·bool·sel)'],
 293 ········['../group__module__simd.xhtml#ga897cd563974628f57a983656bc4f0be5',·1,·'gmx::blend(SimdDInt32·a,·SimdDInt32·b,·SimdDIBool·sel)'],
 294 ········['../group__module__simd.xhtml#gaa089539a35e39d68f6c8b40421e0a68e',·1,·'gmx::blend(SimdDouble·a,·SimdDouble·b,·SimdDBool·sel)'],
 295 ········['../group__module__simd.xhtml#ga9a3c7493047defc21bf934ca9fc39476',·1,·'gmx::blend(Simd4Float·a,·Simd4Float·b,·Simd4FBool·sel)'],
 296 ········['../group__module__simd.xhtml#gafa1d01238ab3305ab17f301f73eaeaa1',·1,·'gmx::blend(Simd4Double·a,·Simd4Double·b,·Simd4DBool·sel)']
297 ····]],297 ····]],
298 ····['bllen_180',·['bllen',·['../classgmx_1_1Lincs.xhtml#a730d195d0cb333e53d6495f81e515127',·1,·'gmx::Lincs']]],298 ····['bllen_180',·['bllen',·['../classgmx_1_1Lincs.xhtml#a730d195d0cb333e53d6495f81e515127',·1,·'gmx::Lincs']]],
299 ····['bllen0_181',·['bllen0',·['../classgmx_1_1Lincs.xhtml#a3ee9e49ac0a6313229d124226e2a4f94',·1,·'gmx::Lincs']]],299 ····['bllen0_181',·['bllen0',·['../classgmx_1_1Lincs.xhtml#a3ee9e49ac0a6313229d124226e2a4f94',·1,·'gmx::Lincs']]],
300 ····['blmf_182',·['blmf',·['../classgmx_1_1Lincs.xhtml#a25ca95bfe854044a505e3311622146b2',·1,·'gmx::Lincs']]],300 ····['blmf_182',·['blmf',·['../classgmx_1_1Lincs.xhtml#a25ca95bfe854044a505e3311622146b2',·1,·'gmx::Lincs']]],
301 ····['blmf1_183',·['blmf1',·['../classgmx_1_1Lincs.xhtml#a901a4826f9964e940971a90fe4309251',·1,·'gmx::Lincs']]],301 ····['blmf1_183',·['blmf1',·['../classgmx_1_1Lincs.xhtml#a901a4826f9964e940971a90fe4309251',·1,·'gmx::Lincs']]],
302 ····['blnr_184',·['blnr',·['../classgmx_1_1Lincs.xhtml#a9ed82f15cc64475ffe441bb1012a7cb6',·1,·'gmx::Lincs']]],302 ····['blnr_184',·['blnr',·['../classgmx_1_1Lincs.xhtml#a9ed82f15cc64475ffe441bb1012a7cb6',·1,·'gmx::Lincs']]],
303 ····['block_185',·['block',·['../classgmx_1_1RangePartitioning.xhtml#a9040a23b8b8ab2a2ed08584694726004',·1,·'gmx::RangePartitioning::block(int·blockIndex)·const'],303 ····['block_185',·['block',·['../classgmx_1_1RangePartitioning.xhtml#a9040a23b8b8ab2a2ed08584694726004',·1,·'gmx::RangePartitioning::block(int·blockIndex)·const'],
Offset 364, 31 lines modifiedOffset 364, 31 lines modified
364 ····['boolean_20elements_240',·['boolean·elements',·['../page_module_selection_parser.xhtml#selparser_tree_bool',·1,·'Boolean·elements'],364 ····['boolean_20elements_240',·['boolean·elements',·['../page_module_selection_parser.xhtml#selparser_tree_bool',·1,·'Boolean·elements'],
365 ········['../page_module_selection_compiler.xhtml#selcompiler_tree_bool',·1,·'Boolean·elements']365 ········['../page_module_selection_compiler.xhtml#selcompiler_tree_bool',·1,·'Boolean·elements']
366 ····]],366 ····]],
367 ····['boolean_20values_241',·['Boolean·values',·['../page_simd.xhtml#autotoc_md62',·1,·'']]],367 ····['boolean_20values_241',·['Boolean·values',·['../page_simd.xhtml#autotoc_md62',·1,·'']]],
368 ····['booleanoption_242',·['booleanoption',·['../classgmx_1_1BooleanOption.xhtml#a580fa621b14b47b0631f613e00f2f3bf',·1,·'gmx::BooleanOption::BooleanOption()'],368 ····['booleanoption_242',·['booleanoption',·['../classgmx_1_1BooleanOption.xhtml#a580fa621b14b47b0631f613e00f2f3bf',·1,·'gmx::BooleanOption::BooleanOption()'],
369 ········['../classgmx_1_1BooleanOption.xhtml',·1,·'gmx::BooleanOption']369 ········['../classgmx_1_1BooleanOption.xhtml',·1,·'gmx::BooleanOption']
370 ····]],370 ····]],
371 ····['booleanoptioninfo_243',·['booleanoptioninfo',·['../classgmx_1_1BooleanOptionInfo.xhtml',·1,·'gmx::BooleanOptionInfo'], 
372 ········['../classgmx_1_1BooleanOptionInfo.xhtml#aaa90f1e16e75120b323b3dcbe7f5d843',·1,·'gmx::BooleanOptionInfo::BooleanOptionInfo()']371 ····['booleanoptioninfo_243',·['booleanoptioninfo',·['../classgmx_1_1BooleanOptionInfo.xhtml#aaa90f1e16e75120b323b3dcbe7f5d843',·1,·'gmx::BooleanOptionInfo::BooleanOptionInfo()'],
 372 ········['../classgmx_1_1BooleanOptionInfo.xhtml',·1,·'gmx::BooleanOptionInfo']
373 ····]],373 ····]],
374 ····['booleanoptionstorage_244',·['booleanoptionstorage',·['../classgmx_1_1BooleanOptionStorage.xhtml',·1,·'gmx::BooleanOptionStorage'],374 ····['booleanoptionstorage_244',·['booleanoptionstorage',·['../classgmx_1_1BooleanOptionStorage.xhtml',·1,·'gmx::BooleanOptionStorage'],
375 ········['../classgmx_1_1BooleanOptionStorage.xhtml#a2a5e82c1584d43c3564ad498785beb11',·1,·'gmx::BooleanOptionStorage::BooleanOptionStorage()']375 ········['../classgmx_1_1BooleanOptionStorage.xhtml#a2a5e82c1584d43c3564ad498785beb11',·1,·'gmx::BooleanOptionStorage::BooleanOptionStorage()']
376 ····]],376 ····]],
377 ····['booleanvaluetostring_245',·['booleanValueToString',·['../md__enums_8h.xhtml#a671fe972ddca1d763b5a13513c04ebc5',·1,·'md_enums.cpp']]],377 ····['booleanvaluetostring_245',·['booleanValueToString',·['../md__enums_8h.xhtml#a671fe972ddca1d763b5a13513c04ebc5',·1,·'md_enums.cpp']]],
378 ····['boolfromenvironmentordefault_246',·['boolFromEnvironmentOrDefault',·['../namespacegmx_1_1anonymous__namespace_02gpu__3dfft__heffte_8cpp_03.xhtml#a29697dccb0406307c20b8c833995b97d',·1,·'gmx::anonymous_namespace{gpu_3dfft_heffte.cpp}']]],378 ····['boolfromenvironmentordefault_246',·['boolFromEnvironmentOrDefault',·['../namespacegmx_1_1anonymous__namespace_02gpu__3dfft__heffte_8cpp_03.xhtml#a29697dccb0406307c20b8c833995b97d',·1,·'gmx::anonymous_namespace{gpu_3dfft_heffte.cpp}']]],
379 ····['boolfromstring_247',·['boolFromString',·['../group__module__utility.xhtml#ga584d812bf08f88312df77eace2eab219',·1,·'gmx']]],379 ····['boolfromstring_247',·['boolFromString',·['../group__module__utility.xhtml#ga584d812bf08f88312df77eace2eab219',·1,·'gmx']]],
380 ····['boolt_248',·['boolt',·['../classgmx_1_1SelectionTreeElement.xhtml#a5681faa349b7dd17efe8c2bcdaac9804',·1,·'gmx::SelectionTreeElement']]],380 ····['boolt_248',·['boolt',·['../classgmx_1_1SelectionTreeElement.xhtml#a5681faa349b7dd17efe8c2bcdaac9804',·1,·'gmx::SelectionTreeElement']]],
381 ····['booltostring_249',·['boolToString',·['../group__module__utility.xhtml#ga3b3b96bfb0ebff9b47f011ab058ceef9',·1,·'gmx']]],381 ····['booltostring_249',·['boolToString',·['../group__module__utility.xhtml#ga3b3b96bfb0ebff9b47f011ab058ceef9',·1,·'gmx']]],
382 ····['booltype_250',·['booltype',·['../structgmx_1_1BoolType.xhtml#ac9aa09c4375a5bb245c289f07f989e59',·1,·'gmx::BoolType::BoolType()'],382 ····['booltype_250',·['booltype',·['../structgmx_1_1BoolType.xhtml#ac9aa09c4375a5bb245c289f07f989e59',·1,·'gmx::BoolType::BoolType()'],
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Offset 851, 16 lines modifiedOffset 851, 16 lines modified
851 ········['../classgmx_1_1OptionStorageTemplate.xhtml#aacee4c66708e962661689f08a462739a',·1,·'gmx::OptionStorageTemplate::clearSet()']851 ········['../classgmx_1_1OptionStorageTemplate.xhtml#aacee4c66708e962661689f08a462739a',·1,·'gmx::OptionStorageTemplate::clearSet()']
852 ····]],852 ····]],
853 ····['clearsymboltable_587',·['clearSymbolTable',·['../classgmx_1_1SelectionCollection_1_1Impl.xhtml#ab674dda1a30837dcbacb7a043f339a19',·1,·'gmx::SelectionCollection::Impl']]],853 ····['clearsymboltable_587',·['clearSymbolTable',·['../classgmx_1_1SelectionCollection_1_1Impl.xhtml#ab674dda1a30837dcbacb7a043f339a19',·1,·'gmx::SelectionCollection::Impl']]],
854 ····['cleartaskforcebufferusedelements_588',·['clearTaskForceBufferUsedElements',·['../namespacegmx.xhtml#a9c65d4e61132e4ba154b1b1e8d772483',·1,·'gmx']]],854 ····['cleartaskforcebufferusedelements_588',·['clearTaskForceBufferUsedElements',·['../namespacegmx.xhtml#a9c65d4e61132e4ba154b1b1e8d772483',·1,·'gmx']]],
855 ····['clfftinitializer_589',·['clfftinitializer',·['../classgmx_1_1ClfftInitializer.xhtml',·1,·'gmx::ClfftInitializer'],855 ····['clfftinitializer_589',·['clfftinitializer',·['../classgmx_1_1ClfftInitializer.xhtml',·1,·'gmx::ClfftInitializer'],
856 ········['../classgmx_1_1ClfftInitializer.xhtml#a8e52d5eb9696dbfff76e6bdc9d56353b',·1,·'gmx::ClfftInitializer::ClfftInitializer()']856 ········['../classgmx_1_1ClfftInitializer.xhtml#a8e52d5eb9696dbfff76e6bdc9d56353b',·1,·'gmx::ClfftInitializer::ClfftInitializer()']
857 ····]],857 ····]],
858 ····['clfftinitializer_2ecpp_590',·['clfftinitializer.cpp',·['../tests_2clfftinitializer_8cpp.xhtml',·1,·'(Global·Namespace)'],858 ····['clfftinitializer_2ecpp_590',·['clfftinitializer.cpp',·['../clfftinitializer_8cpp.xhtml',·1,·'(Global·Namespace)'],
859 ········['../clfftinitializer_8cpp.xhtml',·1,·'(Global·Namespace)']859 ········['../tests_2clfftinitializer_8cpp.xhtml',·1,·'(Global·Namespace)']
860 ····]],860 ····]],
861 ····['clfftinitializer_2eh_591',·['clfftinitializer.h',·['../clfftinitializer_8h.xhtml',·1,·'']]],861 ····['clfftinitializer_2eh_591',·['clfftinitializer.h',·['../clfftinitializer_8h.xhtml',·1,·'']]],
862 ····['clhandle_592',·['clhandle',·['../classgmx_1_1ClHandle.xhtml#afa26827973b650e659cec6b3fdb90a1c',·1,·'gmx::ClHandle::ClHandle()=delete'],862 ····['clhandle_592',·['clhandle',·['../classgmx_1_1ClHandle.xhtml#afa26827973b650e659cec6b3fdb90a1c',·1,·'gmx::ClHandle::ClHandle()=delete'],
863 ········['../classgmx_1_1ClHandle.xhtml#a2dce49849ee0051ee05990c651f0b56a',·1,·'gmx::ClHandle::ClHandle(const·ClHandle·&amp;)=delete'],863 ········['../classgmx_1_1ClHandle.xhtml#a2dce49849ee0051ee05990c651f0b56a',·1,·'gmx::ClHandle::ClHandle(const·ClHandle·&amp;)=delete'],
864 ········['../classgmx_1_1ClHandle.xhtml#a506140fa32d43652bcffc0dc2f95c366',·1,·'gmx::ClHandle::ClHandle(ClHandle·&amp;&amp;)·noexcept=default'],864 ········['../classgmx_1_1ClHandle.xhtml#a506140fa32d43652bcffc0dc2f95c366',·1,·'gmx::ClHandle::ClHandle(ClHandle·&amp;&amp;)·noexcept=default'],
865 ········['../classgmx_1_1ClHandle.xhtml#a27f1a3d671ccf77c8c5c724d2c38d0db',·1,·'gmx::ClHandle::ClHandle(cl_type·handle)'],865 ········['../classgmx_1_1ClHandle.xhtml#a27f1a3d671ccf77c8c5c724d2c38d0db',·1,·'gmx::ClHandle::ClHandle(cl_type·handle)'],
866 ········['../classgmx_1_1ClHandle.xhtml',·1,·'gmx::ClHandle&lt;·cl_type·&gt;']866 ········['../classgmx_1_1ClHandle.xhtml',·1,·'gmx::ClHandle&lt;·cl_type·&gt;']
Offset 940, 24 lines modifiedOffset 940, 24 lines modified
940 ····['cmaprestypes_5f_624',·['cmapResTypes_',·['../structInteractionsOfType.xhtml#a1d8c4755ad9aa601d01712f8497cffd6',·1,·'InteractionsOfType']]],940 ····['cmaprestypes_5f_624',·['cmapResTypes_',·['../structInteractionsOfType.xhtml#a1d8c4755ad9aa601d01712f8497cffd6',·1,·'InteractionsOfType']]],
941 ····['cmdlinehelpcontext_2ecpp_625',·['cmdlinehelpcontext.cpp',·['../cmdlinehelpcontext_8cpp.xhtml',·1,·'']]],941 ····['cmdlinehelpcontext_2ecpp_625',·['cmdlinehelpcontext.cpp',·['../cmdlinehelpcontext_8cpp.xhtml',·1,·'']]],
942 ····['cmdlinehelpcontext_2eh_626',·['cmdlinehelpcontext.h',·['../cmdlinehelpcontext_8h.xhtml',·1,·'']]],942 ····['cmdlinehelpcontext_2eh_626',·['cmdlinehelpcontext.h',·['../cmdlinehelpcontext_8h.xhtml',·1,·'']]],
943 ····['cmdlinehelpmodule_2ecpp_627',·['cmdlinehelpmodule.cpp',·['../cmdlinehelpmodule_8cpp.xhtml',·1,·'(Global·Namespace)'],943 ····['cmdlinehelpmodule_2ecpp_627',·['cmdlinehelpmodule.cpp',·['../cmdlinehelpmodule_8cpp.xhtml',·1,·'(Global·Namespace)'],
944 ········['../tests_2cmdlinehelpmodule_8cpp.xhtml',·1,·'(Global·Namespace)']944 ········['../tests_2cmdlinehelpmodule_8cpp.xhtml',·1,·'(Global·Namespace)']
945 ····]],945 ····]],
946 ····['cmdlinehelpmodule_2eh_628',·['cmdlinehelpmodule.h',·['../cmdlinehelpmodule_8h.xhtml',·1,·'']]],946 ····['cmdlinehelpmodule_2eh_628',·['cmdlinehelpmodule.h',·['../cmdlinehelpmodule_8h.xhtml',·1,·'']]],
947 ····['cmdlinehelpwriter_2ecpp_629',·['cmdlinehelpwriter.cpp',·['../cmdlinehelpwriter_8cpp.xhtml',·1,·'(Global·Namespace)'],947 ····['cmdlinehelpwriter_2ecpp_629',·['cmdlinehelpwriter.cpp',·['../tests_2cmdlinehelpwriter_8cpp.xhtml',·1,·'(Global·Namespace)'],
948 ········['../tests_2cmdlinehelpwriter_8cpp.xhtml',·1,·'(Global·Namespace)']948 ········['../cmdlinehelpwriter_8cpp.xhtml',·1,·'(Global·Namespace)']
949 ····]],949 ····]],
950 ····['cmdlinehelpwriter_2eh_630',·['cmdlinehelpwriter.h',·['../cmdlinehelpwriter_8h.xhtml',·1,·'']]],950 ····['cmdlinehelpwriter_2eh_630',·['cmdlinehelpwriter.h',·['../cmdlinehelpwriter_8h.xhtml',·1,·'']]],
951 ····['cmdlineinit_2ecpp_631',·['cmdlineinit.cpp',·['../cmdlineinit_8cpp.xhtml',·1,·'']]],951 ····['cmdlineinit_2ecpp_631',·['cmdlineinit.cpp',·['../cmdlineinit_8cpp.xhtml',·1,·'']]],
952 ····['cmdlineinit_2eh_632',·['cmdlineinit.h',·['../cmdlineinit_8h.xhtml',·1,·'']]],952 ····['cmdlineinit_2eh_632',·['cmdlineinit.h',·['../cmdlineinit_8h.xhtml',·1,·'']]],
953 ····['cmdlinemodule_2ecpp_633',·['cmdlinemodule.cpp',·['../cmdlinemodule_8cpp.xhtml',·1,·'']]],953 ····['cmdlinemodule_2ecpp_633',·['cmdlinemodule.cpp',·['../cmdlinemodule_8cpp.xhtml',·1,·'']]],
954 ····['cmdlinemodule_2eh_634',·['cmdlinemodule.h',·['../cmdlinemodule_8h.xhtml',·1,·'']]],954 ····['cmdlinemodule_2eh_634',·['cmdlinemodule.h',·['../cmdlinemodule_8h.xhtml',·1,·'']]],
955 ····['cmdlinemodulemanager_2ecpp_635',·['cmdlinemodulemanager.cpp',·['../tests_2cmdlinemodulemanager_8cpp.xhtml',·1,·'(Global·Namespace)'],955 ····['cmdlinemodulemanager_2ecpp_635',·['cmdlinemodulemanager.cpp',·['../cmdlinemodulemanager_8cpp.xhtml',·1,·'(Global·Namespace)'],
956 ········['../cmdlinemodulemanager_8cpp.xhtml',·1,·'(Global·Namespace)']956 ········['../tests_2cmdlinemodulemanager_8cpp.xhtml',·1,·'(Global·Namespace)']
957 ····]],957 ····]],
958 ····['cmdlinemodulemanager_2eh_636',·['cmdlinemodulemanager.h',·['../cmdlinemodulemanager_8h.xhtml',·1,·'']]],958 ····['cmdlinemodulemanager_2eh_636',·['cmdlinemodulemanager.h',·['../cmdlinemodulemanager_8h.xhtml',·1,·'']]],
959 ····['cmdlinemodulemanager_5fimpl_2eh_637',·['cmdlinemodulemanager_impl.h',·['../cmdlinemodulemanager__impl_8h.xhtml',·1,·'']]],959 ····['cmdlinemodulemanager_5fimpl_2eh_637',·['cmdlinemodulemanager_impl.h',·['../cmdlinemodulemanager__impl_8h.xhtml',·1,·'']]],
960 ····['cmdlinemodulemanagertest_2ecpp_638',·['cmdlinemodulemanagertest.cpp',·['../cmdlinemodulemanagertest_8cpp.xhtml',·1,·'']]],960 ····['cmdlinemodulemanagertest_2ecpp_638',·['cmdlinemodulemanagertest.cpp',·['../cmdlinemodulemanagertest_8cpp.xhtml',·1,·'']]],
961 ····['cmdlinemodulemanagertest_2eh_639',·['cmdlinemodulemanagertest.h',·['../cmdlinemodulemanagertest_8h.xhtml',·1,·'']]],961 ····['cmdlinemodulemanagertest_2eh_639',·['cmdlinemodulemanagertest.h',·['../cmdlinemodulemanagertest_8h.xhtml',·1,·'']]],
962 ····['cmdlineoptionsmodule_2ecpp_640',·['cmdlineoptionsmodule.cpp',·['../cmdlineoptionsmodule_8cpp.xhtml',·1,·'']]],962 ····['cmdlineoptionsmodule_2ecpp_640',·['cmdlineoptionsmodule.cpp',·['../cmdlineoptionsmodule_8cpp.xhtml',·1,·'']]],
963 ····['cmdlineoptionsmodule_2eh_641',·['cmdlineoptionsmodule.h',·['../cmdlineoptionsmodule_8h.xhtml',·1,·'']]],963 ····['cmdlineoptionsmodule_2eh_641',·['cmdlineoptionsmodule.h',·['../cmdlineoptionsmodule_8h.xhtml',·1,·'']]],
Offset 1451, 34 lines modifiedOffset 1451, 34 lines modified
1451 ····['constraintvariable_968',·['ConstraintVariable',·['../namespacegmx.xhtml#adf0082b4644c3e1bec84eeb8e7328cab',·1,·'gmx']]],1451 ····['constraintvariable_968',·['ConstraintVariable',·['../namespacegmx.xhtml#adf0082b4644c3e1bec84eeb8e7328cab',·1,·'gmx']]],
1452 ····['constraintvirial_969',·['constraintVirial',·['../classgmx_1_1EnergyData.xhtml#a7622cec50e1cd69a250424a37352a254',·1,·'gmx::EnergyData']]],1452 ····['constraintvirial_969',·['constraintVirial',·['../classgmx_1_1EnergyData.xhtml#a7622cec50e1cd69a250424a37352a254',·1,·'gmx::EnergyData']]],
1453 ····['constrtestdata_2ecpp_970',·['constrtestdata.cpp',·['../constrtestdata_8cpp.xhtml',·1,·'']]],1453 ····['constrtestdata_2ecpp_970',·['constrtestdata.cpp',·['../constrtestdata_8cpp.xhtml',·1,·'']]],
1454 ····['constrtestdata_2eh_971',·['constrtestdata.h',·['../constrtestdata_8h.xhtml',·1,·'']]],1454 ····['constrtestdata_2eh_971',·['constrtestdata.h',·['../constrtestdata_8h.xhtml',·1,·'']]],
1455 ····['constrtestrunners_2ecpp_972',·['constrtestrunners.cpp',·['../constrtestrunners_8cpp.xhtml',·1,·'']]],1455 ····['constrtestrunners_2ecpp_972',·['constrtestrunners.cpp',·['../constrtestrunners_8cpp.xhtml',·1,·'']]],
1456 ····['constrtestrunners_2eh_973',·['constrtestrunners.h',·['../constrtestrunners_8h.xhtml',·1,·'']]],1456 ····['constrtestrunners_2eh_973',·['constrtestrunners.h',·['../constrtestrunners_8h.xhtml',·1,·'']]],
1457 ····['constrtestrunners_5fgpu_2ecpp_974',·['constrtestrunners_gpu.cpp',·['../constrtestrunners__gpu_8cpp.xhtml',·1,·'']]],1457 ····['constrtestrunners_5fgpu_2ecpp_974',·['constrtestrunners_gpu.cpp',·['../constrtestrunners__gpu_8cpp.xhtml',·1,·'']]],
1458 ····['construct_975',·['construct',·['../classgmx_1_1PairlistSets.xhtml#aad42f93cba846e890cf522fe185f25c8',·1,·'gmx::PairlistSets::construct()'],1458 ····['construct_975',·['construct',·['../classgmx_1_1DefaultInitializationAllocator.xhtml#a4243ef5cf8030cd9f662d52a57fed38d',·1,·'gmx::DefaultInitializationAllocator::construct()'],
1459 ········['../classgmx_1_1VirtualSitesHandler_1_1Impl.xhtml#a2f1e45ab588659fa6728723727d84de9',·1,·'gmx::VirtualSitesHandler::Impl::construct()'],1459 ········['../classgmx_1_1VirtualSitesHandler_1_1Impl.xhtml#a2f1e45ab588659fa6728723727d84de9',·1,·'gmx::VirtualSitesHandler::Impl::construct()'],
1460 ········['../classgmx_1_1VirtualSitesHandler.xhtml#ac1f0d29a9ee94b2b52c914c1aa08e633',·1,·'gmx::VirtualSitesHandler::construct()'],1460 ········['../classgmx_1_1VirtualSitesHandler.xhtml#ac1f0d29a9ee94b2b52c914c1aa08e633',·1,·'gmx::VirtualSitesHandler::construct()'],
1461 ········['../classgmx_1_1DefaultInitializationAllocator.xhtml#a4243ef5cf8030cd9f662d52a57fed38d',·1,·'gmx::DefaultInitializationAllocator::construct(U·*ptr)·noexcept(std::is_nothrow_default_constructible_v&lt;·U·&gt;)'],1461 ········['../classgmx_1_1PairlistSets.xhtml#aad42f93cba846e890cf522fe185f25c8',·1,·'gmx::PairlistSets::construct()'],
1462 ········['../classgmx_1_1DefaultInitializationAllocator.xhtml#a0dd33fe8ace35e948f8866fba3f2153a',·1,·'gmx::DefaultInitializationAllocator::construct(U·*ptr,·Args·&amp;&amp;...·args)']1462 ········['../classgmx_1_1DefaultInitializationAllocator.xhtml#a0dd33fe8ace35e948f8866fba3f2153a',·1,·'gmx::DefaultInitializationAllocator::construct()']
1463 ····]],1463 ····]],
1464 ····['construct_5fvsites_976',·['construct_vsites',·['../namespacegmx.xhtml#a6001f47639fd23ba7e3a7416b5d814d3',·1,·'gmx']]],1464 ····['construct_5fvsites_976',·['construct_vsites',·['../namespacegmx.xhtml#a6001f47639fd23ba7e3a7416b5d814d3',·1,·'gmx']]],
1465 ····['construct_5fvsites_5fthread_977',·['construct_vsites_thread',·['../namespacegmx.xhtml#ad7231a58e8029ba430aee223a45befb7',·1,·'gmx']]],1465 ····['construct_5fvsites_5fthread_977',·['construct_vsites_thread',·['../namespacegmx.xhtml#ad7231a58e8029ba430aee223a45befb7',·1,·'gmx']]],
1466 ····['constructed_20by_20the_20parser_978',·['Element·tree·constructed·by·the·parser',·['../page_module_selection_parser.xhtml#selparser_tree',·1,·'']]],1466 ····['constructed_20by_20the_20parser_978',·['Element·tree·constructed·by·the·parser',·['../page_module_selection_parser.xhtml#selparser_tree',·1,·'']]],
1467 ····['constructgpuhaloexchange_979',·['constructGpuHaloExchange',·['../domdec_8h.xhtml#ad281395404e44cc286365d86935410cb',·1,·'domdec.cpp']]],1467 ····['constructgpuhaloexchange_979',·['constructGpuHaloExchange',·['../domdec_8h.xhtml#ad281395404e44cc286365d86935410cb',·1,·'domdec.cpp']]],
1468 ····['constructingatomidx_980',·['constructingAtomIdx',·['../structgmx_1_1test_1_1anonymous__namespace_02virtualsites_8cpp_03_1_1VirtualSiteTest_1_1VirtualSite.xhtml#af098075ee360beac10bec4a888dd3250',·1,·'gmx::test::anonymous_namespace{virtualsites.cpp}::VirtualSiteTest::VirtualSite']]],1468 ····['constructingatomidx_980',·['constructingAtomIdx',·['../structgmx_1_1test_1_1anonymous__namespace_02virtualsites_8cpp_03_1_1VirtualSiteTest_1_1VirtualSite.xhtml#af098075ee360beac10bec4a888dd3250',·1,·'gmx::test::anonymous_namespace{virtualsites.cpp}::VirtualSiteTest::VirtualSite']]],
1469 ····['construction_981',·['Construction',·['../page_analysistemplate.xhtml#autotoc_md82',·1,·'']]],1469 ····['construction_981',·['Construction',·['../page_analysistemplate.xhtml#autotoc_md82',·1,·'']]],
1470 ····['constructlocalatomset_982',·['constructLocalAtomSet',·['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFitting.xhtml#a3938ce64c8a981853d9bbfc8d89855f8',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFitting']]],1470 ····['constructlocalatomset_982',·['constructLocalAtomSet',·['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFitting.xhtml#a3938ce64c8a981853d9bbfc8d89855f8',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFitting']]],
1471 ····['constructpairlist_983',·['constructPairlist',·['../structgmx_1_1nonbonded__verlet__t.xhtml#a171122535bac2e42ce2b8cfe5cab4428',·1,·'gmx::nonbonded_verlet_t']]],1471 ····['constructpairlist_983',·['constructPairlist',·['../structgmx_1_1nonbonded__verlet__t.xhtml#a171122535bac2e42ce2b8cfe5cab4428',·1,·'gmx::nonbonded_verlet_t']]],
1472 ····['constructpairlists_984',·['constructPairlists',·['../classgmx_1_1PairlistSet.xhtml#a7c0b3e83f4e04970efe414e4b2a65603',·1,·'gmx::PairlistSet']]],1472 ····['constructpairlists_984',·['constructPairlists',·['../classgmx_1_1PairlistSet.xhtml#a7c0b3e83f4e04970efe414e4b2a65603',·1,·'gmx::PairlistSet']]],
1473 ····['constructvirtualsites_985',·['constructVirtualSites',·['../namespacegmx.xhtml#a611ed883c9cb1e8617196276349b4606',·1,·'gmx']]],1473 ····['constructvirtualsites_985',·['constructVirtualSites',·['../namespacegmx.xhtml#a611ed883c9cb1e8617196276349b4606',·1,·'gmx']]],
1474 ····['constructvirtualsitesglobal_986',·['constructVirtualSitesGlobal',·['../namespacegmx.xhtml#ada81d297fde33e6be3133e7e81729c74',·1,·'gmx']]],1474 ····['constructvirtualsitesglobal_986',·['constructVirtualSitesGlobal',·['../namespacegmx.xhtml#ada81d297fde33e6be3133e7e81729c74',·1,·'gmx']]],
1475 ····['constvelocitiesview_987',·['constVelocitiesView',·['../classgmx_1_1StatePropagatorData.xhtml#a68bb9f3867970a2719a7c5f243d6833f',·1,·'gmx::StatePropagatorData']]],1475 ····['constvelocitiesview_987',·['constVelocitiesView',·['../classgmx_1_1StatePropagatorData.xhtml#a68bb9f3867970a2719a7c5f243d6833f',·1,·'gmx::StatePropagatorData']]],
 1476 ····['constview_988',·['constview',·['../classgmx_1_1GaussTransform3D.xhtml#a11f8ff23098dfc25e9e2628ba800a20d',·1,·'gmx::GaussTransform3D::constView()'],
1476 ····['constview_988',·['constview',·['../classgmx_1_1MrcDensityMapOfFloatReader.xhtml#a766d0e2492b17e27c5f2508257075a1b',·1,·'gmx::MrcDensityMapOfFloatReader::constView()'],1477 ········['../classgmx_1_1MrcDensityMapOfFloatReader.xhtml#a766d0e2492b17e27c5f2508257075a1b',·1,·'gmx::MrcDensityMapOfFloatReader::constView()']
1477 ········['../classgmx_1_1GaussTransform3D.xhtml#a11f8ff23098dfc25e9e2628ba800a20d',·1,·'gmx::GaussTransform3D::constView()'] 
1478 ····]],1478 ····]],
1479 ····['container_989',·['Container',·['../namespacegmx_1_1test_1_1anonymous__namespace_02textreader_8cpp_03.xhtml#acaeeb0653a1f086bbc5f4dbd4f0b7770',·1,·'gmx::test::anonymous_namespace{textreader.cpp}']]],1479 ····['container_989',·['Container',·['../namespacegmx_1_1test_1_1anonymous__namespace_02textreader_8cpp_03.xhtml#acaeeb0653a1f086bbc5f4dbd4f0b7770',·1,·'gmx::test::anonymous_namespace{textreader.cpp}']]],
1480 ····['contains_990',·['contains',·['../group__module__utility.xhtml#gac0bef974d105fbfcc7e5362111eafed5',·1,·'gmx::contains(const·std::string·&amp;str,·const·std::string·&amp;substr)'],1480 ····['contains_990',·['contains',·['../group__module__utility.xhtml#gac0bef974d105fbfcc7e5362111eafed5',·1,·'gmx::contains(const·std::string·&amp;str,·const·std::string·&amp;substr)'],
1481 ········['../group__module__utility.xhtml#ga5d6c1daa93bf46a2c397d179e007e3e8',·1,·'gmx::contains(const·std::string·&amp;str,·const·char·*substr)'],1481 ········['../group__module__utility.xhtml#ga5d6c1daa93bf46a2c397d179e007e3e8',·1,·'gmx::contains(const·std::string·&amp;str,·const·char·*substr)'],
1482 ········['../classgmx_1_1test_1_1CommandLine.xhtml#a003456934d4b8e1e53637f996233df8c',·1,·'gmx::test::CommandLine::contains()']1482 ········['../classgmx_1_1test_1_1CommandLine.xhtml#a003456934d4b8e1e53637f996233df8c',·1,·'gmx::test::CommandLine::contains()']
1483 ····]],1483 ····]],
1484 ····['containsgroupname_991',·['containsGroupName',·['../classgmx_1_1IndexGroupsAndNames.xhtml#a96ab37e104761778680c5704edc7596a',·1,·'gmx::IndexGroupsAndNames']]],1484 ····['containsgroupname_991',·['containsGroupName',·['../classgmx_1_1IndexGroupsAndNames.xhtml#a96ab37e104761778680c5704edc7596a',·1,·'gmx::IndexGroupsAndNames']]],
Offset 1517, 19 lines modifiedOffset 1517, 19 lines modified
1517 ····['convertilisttonbnxnorder_1016',·['convertIlistToNbnxnOrder',·['../namespacegmx.xhtml#a7656ab1400e22553781433915fe98c1f',·1,·'gmx']]],1517 ····['convertilisttonbnxnorder_1016',·['convertIlistToNbnxnOrder',·['../namespacegmx.xhtml#a7656ab1400e22553781433915fe98c1f',·1,·'gmx']]],
1518 ····['convertinteractionstest_1017',·['ConvertInteractionsTest',·['../namespacegmx_1_1test_1_1anonymous__namespace_02convparm_8cpp_03.xhtml#af98e11d0ac91fbdc90b7b7d1896bb93f',·1,·'gmx::test::anonymous_namespace{convparm.cpp}']]],1518 ····['convertinteractionstest_1017',·['ConvertInteractionsTest',·['../namespacegmx_1_1test_1_1anonymous__namespace_02convparm_8cpp_03.xhtml#af98e11d0ac91fbdc90b7b7d1896bb93f',·1,·'gmx::test::anonymous_namespace{convparm.cpp}']]],
1519 ····['convertkernel_1018',·['convertKernel',·['../classGridConverter.xhtml#ab9717d644112f48204931e5685944aeb',·1,·'GridConverter']]],1519 ····['convertkernel_1018',·['convertKernel',·['../classGridConverter.xhtml#ab9717d644112f48204931e5685944aeb',·1,·'GridConverter']]],
1520 ····['convertljcombinationrule_1019',·['convertLJCombinationRule',·['../namespacegmx.xhtml#affc1ec9db2742e91e908d3a9e87df83c',·1,·'gmx']]],1520 ····['convertljcombinationrule_1019',·['convertLJCombinationRule',·['../namespacegmx.xhtml#affc1ec9db2742e91e908d3a9e87df83c',·1,·'gmx']]],
1521 ····['convertoldtonewgroupformat_1020',·['convertOldToNewGroupFormat',·['../gromacs_2swap_2swapcoords_8cpp.xhtml#a2403a53b125b6939029cab9e2bfa79b1',·1,·'swapcoords.cpp']]],1521 ····['convertoldtonewgroupformat_1020',·['convertOldToNewGroupFormat',·['../gromacs_2swap_2swapcoords_8cpp.xhtml#a2403a53b125b6939029cab9e2bfa79b1',·1,·'swapcoords.cpp']]],
1522 ····['convertoptionvalue_1021',·['convertOptionValue',·['../classgmx_1_1SelectionOptionManager.xhtml#a89e3f776167a202203ce8a0883008ad9',·1,·'gmx::SelectionOptionManager']]],1522 ····['convertoptionvalue_1021',·['convertOptionValue',·['../classgmx_1_1SelectionOptionManager.xhtml#a89e3f776167a202203ce8a0883008ad9',·1,·'gmx::SelectionOptionManager']]],
1523 ····['convertparameters_1022',·['convertParameters',·['../namespacegmx_1_1anonymous__namespace_02electricfield_8cpp_03.xhtml#aa8ef231ccc106c1ff3e72f76b3d53c4d',·1,·'gmx::anonymous_namespace{electricfield.cpp}']]],1523 ····['convertparameters_1022',·['convertParameters',·['../namespacegmx_1_1anonymous__namespace_02electricfield_8cpp_03.xhtml#aa8ef231ccc106c1ff3e72f76b3d53c4d',·1,·'gmx::anonymous_namespace{electricfield.cpp}']]],
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1524 ····['convertpmegridtofftgrid_1023',·['convertpmegridtofftgrid',·['../pme__gpu__grid__sycl_8cpp.xhtml#ad0f0ee112a6d07185755841b1f74c807',·1,·'convertPmeGridToFftGrid(const·PmeGpu·*pmeGpu,·DeviceBuffer&lt;·float·&gt;·*d_fftRealGrid,·const·int·gridIndex):&#160;pme_gpu_grid_sycl.cpp'],1525 ········['../pme__gpu__grid__sycl_8cpp.xhtml#ad0f0ee112a6d07185755841b1f74c807',·1,·'convertPmeGridToFftGrid(const·PmeGpu·*pmeGpu,·DeviceBuffer&lt;·float·&gt;·*d_fftRealGrid,·const·int·gridIndex):&#160;pme_gpu_grid_sycl.cpp'],
1525 ········['../pme__gpu__grid__sycl_8cpp.xhtml#af858b7f9a5496cd1def9b9c72b36baab',·1,·'convertPmeGridToFftGrid(const·PmeGpu·*pmeGpu,·float·*h_fftRealGrid,·gmx_parallel_3dfft·*fftSetup,·const·int·gridIndex):&#160;pme_gpu_grid_sycl.cpp'],1526 ········['../pme__gpu__grid__sycl_8cpp.xhtml#af858b7f9a5496cd1def9b9c72b36baab',·1,·'convertPmeGridToFftGrid(const·PmeGpu·*pmeGpu,·float·*h_fftRealGrid,·gmx_parallel_3dfft·*fftSetup,·const·int·gridIndex):&#160;pme_gpu_grid_sycl.cpp'],
1526 ········['../pme__gpu__grid_8h.xhtml#a628873119d33d5f1024be5f083a7edf8',·1,·'convertPmeGridToFftGrid(const·PmeGpu·*pmeGpu,·DeviceBuffer&lt;·float·&gt;·*d_fftRealGrid,·int·gridIndex):&#160;pme_gpu_grid_sycl.cpp'],1527 ········['../pme__gpu__grid_8h.xhtml#a628873119d33d5f1024be5f083a7edf8',·1,·'convertPmeGridToFftGrid(const·PmeGpu·*pmeGpu,·DeviceBuffer&lt;·float·&gt;·*d_fftRealGrid,·int·gridIndex):&#160;pme_gpu_grid_sycl.cpp'],
1527 ········['../pme__gpu__grid_8h.xhtml#aedb25f6830201b8597162ace33091719',·1,·'convertPmeGridToFftGrid(const·PmeGpu·*pmeGpu,·float·*h_fftRealGrid,·gmx_parallel_3dfft·*fftSetup,·int·gridIndex):&#160;pme_gpu_grid_sycl.cpp'],1528 ········['../pme__gpu__grid_8h.xhtml#aedb25f6830201b8597162ace33091719',·1,·'convertPmeGridToFftGrid(const·PmeGpu·*pmeGpu,·float·*h_fftRealGrid,·gmx_parallel_3dfft·*fftSetup,·int·gridIndex):&#160;pme_gpu_grid_sycl.cpp'],
1528 ········['../pme__gpu__ocl__stubs_8cpp.xhtml#a2bc483902c690327c49dc698af5e0f12',·1,·'convertPmeGridToFftGrid(const·PmeGpu·*,·float·*,·gmx_parallel_3dfft·*,·const·int):&#160;pme_gpu_ocl_stubs.cpp'], 
1529 ········['../pme__gpu__ocl__stubs_8cpp.xhtml#afd0074b499fbdb6a7c6eb61725ab50b1',·1,·'convertPmeGridToFftGrid(const·PmeGpu·*,·DeviceBuffer&lt;·float·&gt;·*,·const·int):&#160;pme_gpu_ocl_stubs.cpp']1529 ········['../pme__gpu__ocl__stubs_8cpp.xhtml#afd0074b499fbdb6a7c6eb61725ab50b1',·1,·'convertPmeGridToFftGrid(const·PmeGpu·*,·DeviceBuffer&lt;·float·&gt;·*,·const·int):&#160;pme_gpu_ocl_stubs.cpp']
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1532 ····['convertrvectofloat3ondevice_5fkernel_1025',·['convertRVecToFloat3OnDevice_kernel',·['../namespacegmx_1_1test.xhtml#a42a3b91fc397213c7757614d03a1986c',·1,·'gmx::test']]],1532 ····['convertrvectofloat3ondevice_5fkernel_1025',·['convertRVecToFloat3OnDevice_kernel',·['../namespacegmx_1_1test.xhtml#a42a3b91fc397213c7757614d03a1986c',·1,·'gmx::test']]],
1533 ····['convertrvectofloat3onhost_1026',·['convertRVecToFloat3OnHost',·['../namespacegmx_1_1test.xhtml#abf95d2cdd62cf09055011d82aef58b62',·1,·'gmx::test']]],1533 ····['convertrvectofloat3onhost_1026',·['convertRVecToFloat3OnHost',·['../namespacegmx_1_1test.xhtml#abf95d2cdd62cf09055011d82aef58b62',·1,·'gmx::test']]],
1534 ····['convertsigmaepsilontoc6c12_1027',·['convertSigmaEpsilonToC6C12',·['../namespacegmx.xhtml#a6dcd9848184514744be06b2c7c30bde9',·1,·'gmx']]],1534 ····['convertsigmaepsilontoc6c12_1027',·['convertSigmaEpsilonToC6C12',·['../namespacegmx.xhtml#a6dcd9848184514744be06b2c7c30bde9',·1,·'gmx']]],
1535 ····['converttocheckpointsignal_1028',·['convertToCheckpointSignal',·['../namespacegmx.xhtml#a534f177784a0b1985a0d19aa93d397b6',·1,·'gmx']]],1535 ····['converttocheckpointsignal_1028',·['convertToCheckpointSignal',·['../namespacegmx.xhtml#a534f177784a0b1985a0d19aa93d397b6',·1,·'gmx']]],
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1550 ····['coorddata_1040',·['coorddata',·['../structgmx_1_1CorrelationBlockData_1_1CoordData.xhtml',·1,·'gmx::CorrelationBlockData::CoordData'],1551 ········['../structgmx_1_1CorrelationBlockData_1_1CoordData.xhtml',·1,·'gmx::CorrelationBlockData::CoordData'],
1551 ········['../classgmx_1_1CorrelationBlockData.xhtml#ad40bec22c752f8a1252d03edce5c8835',·1,·'gmx::CorrelationBlockData::coordData()·const'],1552 ········['../classgmx_1_1CorrelationBlockData.xhtml#ad40bec22c752f8a1252d03edce5c8835',·1,·'gmx::CorrelationBlockData::coordData()·const']
1552 ········['../structgmx_1_1CorrelationBlockData_1_1CoordData.xhtml#a808c9b7d3d8968f51788ecbd1dbd58cc',·1,·'gmx::CorrelationBlockData::CoordData::CoordData()'] 
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1555 ····['coordinate_20data_20output_1042',·['Coordinate·data·output',·['../page_trajectoryanalysisframework.xhtml#autotoc_md101',·1,·'']]],1555 ····['coordinate_20data_20output_1042',·['Coordinate·data·output',·['../page_trajectoryanalysisframework.xhtml#autotoc_md101',·1,·'']]],
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1564 ····['coordinatefileflags_1049',·['CoordinateFileFlags',·['../group__module__coordinateio.xhtml#ga3b3ecc36ead08ea2c31b70f0b85b30d6',·1,·'gmx']]],1564 ····['coordinatefileflags_1049',·['CoordinateFileFlags',·['../group__module__coordinateio.xhtml#ga3b3ecc36ead08ea2c31b70f0b85b30d6',·1,·'gmx']]],
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97 ····['dataframe_2ecpp_51',·['dataframe.cpp',·['../dataframe_8cpp.xhtml',·1,·'']]],97 ····['dataframe_2ecpp_51',·['dataframe.cpp',·['../dataframe_8cpp.xhtml',·1,·'']]],
98 ····['dataframe_2eh_52',·['dataframe.h',·['../dataframe_8h.xhtml',·1,·'']]],98 ····['dataframe_2eh_52',·['dataframe.h',·['../dataframe_8h.xhtml',·1,·'']]],
99 ····['datahandle_53',·['dataHandle',·['../classgmx_1_1TrajectoryAnalysisModuleData.xhtml#ae600024eaa634d84157bc7c75c020e97',·1,·'gmx::TrajectoryAnalysisModuleData']]],99 ····['datahandle_53',·['dataHandle',·['../classgmx_1_1TrajectoryAnalysisModuleData.xhtml#ae600024eaa634d84157bc7c75c020e97',·1,·'gmx::TrajectoryAnalysisModuleData']]],
100 ····['dataid_54',·['dataid',·['../classgmx_1_1NoseHooverChainsData.xhtml#a8699a78cbaf0bdbd52fc5af4fc91f356',·1,·'gmx::NoseHooverChainsData::dataID()'],100 ····['dataid_54',·['dataid',·['../classgmx_1_1NoseHooverChainsData.xhtml#a8699a78cbaf0bdbd52fc5af4fc91f356',·1,·'gmx::NoseHooverChainsData::dataID()'],
101 ········['../classgmx_1_1MttkPropagatorConnection.xhtml#a41b861cedc9560f93acd09363109c110',·1,·'gmx::MttkPropagatorConnection::dataID()'],101 ········['../classgmx_1_1MttkPropagatorConnection.xhtml#a41b861cedc9560f93acd09363109c110',·1,·'gmx::MttkPropagatorConnection::dataID()'],
102 ········['../classgmx_1_1MttkData.xhtml#a3ab4aa2bf51a723fbdc303de2856e907',·1,·'gmx::MttkData::dataID()']102 ········['../classgmx_1_1MttkData.xhtml#a3ab4aa2bf51a723fbdc303de2856e907',·1,·'gmx::MttkData::dataID()']
Offset 433, 45 lines modifiedOffset 433, 45 lines modified
433 ····['deltaf_267',·['deltaF',·['../structanonymous__namespace_02edsam_8cpp_03_1_1t__edflood.xhtml#ac47eaa589ac996758135ea626493d11d',·1,·'anonymous_namespace{edsam.cpp}::t_edflood']]],433 ····['deltaf_267',·['deltaF',·['../structanonymous__namespace_02edsam_8cpp_03_1_1t__edflood.xhtml#ac47eaa589ac996758135ea626493d11d',·1,·'anonymous_namespace{edsam.cpp}::t_edflood']]],
434 ····['deltaf0_268',·['deltaF0',·['../structanonymous__namespace_02edsam_8cpp_03_1_1t__edflood.xhtml#a7d9a5161da847e2b9c6d52781093c247',·1,·'anonymous_namespace{edsam.cpp}::t_edflood']]],434 ····['deltaf0_268',·['deltaF0',·['../structanonymous__namespace_02edsam_8cpp_03_1_1t__edflood.xhtml#a7d9a5161da847e2b9c6d52781093c247',·1,·'anonymous_namespace{edsam.cpp}::t_edflood']]],
435 ····['deltah_269',·['deltaH',·['../classForeignLambdaTerms.xhtml#a2618f0f679eb583a5bdb283aba24b098',·1,·'ForeignLambdaTerms']]],435 ····['deltah_269',·['deltaH',·['../classForeignLambdaTerms.xhtml#a2618f0f679eb583a5bdb283aba24b098',·1,·'ForeignLambdaTerms']]],
436 ····['deltalambda_270',·['deltaLambda',·['../structgmx_1_1test_1_1anonymous__namespace_02freeenergyparameters_8cpp_03_1_1FreeEnergyParameterTestParameters.xhtml#a91ddeaef163751321c2889d6a297d9fc',·1,·'gmx::test::anonymous_namespace{freeenergyparameters.cpp}::FreeEnergyParameterTestParameters']]],436 ····['deltalambda_270',·['deltaLambda',·['../structgmx_1_1test_1_1anonymous__namespace_02freeenergyparameters_8cpp_03_1_1FreeEnergyParameterTestParameters.xhtml#a91ddeaef163751321c2889d6a297d9fc',·1,·'gmx::test::anonymous_namespace{freeenergyparameters.cpp}::FreeEnergyParameterTestParameters']]],
437 ····['deltaq_271',·['deltaQ',·['../structt__swap.xhtml#a7a40e974fc44cfe262f80dc60339c065',·1,·'t_swap']]],437 ····['deltaq_271',·['deltaQ',·['../structt__swap.xhtml#a7a40e974fc44cfe262f80dc60339c065',·1,·'t_swap']]],
438 ····['density_272',·['density',·['../classgmx_1_1DensitySimilarityMeasure.xhtml#afeeb3485031d214a59eea4efa5c10332',·1,·'gmx::DensitySimilarityMeasure']]],438 ····['density_272',·['density',·['../classgmx_1_1DensitySimilarityMeasure.xhtml#afeeb3485031d214a59eea4efa5c10332',·1,·'gmx::DensitySimilarityMeasure']]],
439 ····['densitydatacopy_273',·['densityDataCopy',·['../classgmx_1_1MrcDensityMapOfFloatFromFileReader.xhtml#a3bb54d371697405c206f11d4dfb534a4',·1,·'gmx::MrcDensityMapOfFloatFromFileReader']]],439 ····['densitydatacopy_273',·['densityDataCopy',·['../classgmx_1_1MrcDensityMapOfFloatFromFileReader.xhtml#a3bb54d371697405c206f11d4dfb534a4',·1,·'gmx::MrcDensityMapOfFloatFromFileReader']]],
440 ····['densityfit_2ecpp_274',·['densityfit.cpp',·['../tests_2densityfit_8cpp.xhtml',·1,·'(Global·Namespace)'],440 ····['densityfit_2ecpp_274',·['densityfit.cpp',·['../densityfit_8cpp.xhtml',·1,·'(Global·Namespace)'],
441 ········['../densityfit_8cpp.xhtml',·1,·'(Global·Namespace)']441 ········['../tests_2densityfit_8cpp.xhtml',·1,·'(Global·Namespace)']
442 ····]],442 ····]],
443 ····['densityfit_2eh_275',·['densityfit.h',·['../densityfit_8h.xhtml',·1,·'']]],443 ····['densityfit_2eh_275',·['densityfit.h',·['../densityfit_8h.xhtml',·1,·'']]],
444 ····['densityfitting_276',·['densityfitting',·['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFitting.xhtml',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFitting'],444 ····['densityfitting_276',·['densityfitting',·['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFitting.xhtml',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFitting'],
445 ········['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFitting.xhtml#aa9839e3720a234577932dd8d647294c7',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFitting::DensityFitting()']445 ········['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFitting.xhtml#aa9839e3720a234577932dd8d647294c7',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFitting::DensityFitting()']
446 ····]],446 ····]],
447 ····['densityfitting_2ecpp_277',·['densityfitting.cpp',·['../densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)'],447 ····['densityfitting_2ecpp_277',·['densityfitting.cpp',·['../tests_2densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)'],
448 ········['../tests_2densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)']448 ········['../densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)']
449 ····]],449 ····]],
450 ····['densityfittingamplitudelookup_278',·['densityfittingamplitudelookup',·['../classgmx_1_1DensityFittingAmplitudeLookup.xhtml#ab390de4a90d3b122cc6d54862bfc158f',·1,·'gmx::DensityFittingAmplitudeLookup::DensityFittingAmplitudeLookup(DensityFittingAmplitudeLookup·&amp;&amp;other)·noexcept'],450 ····['densityfittingamplitudelookup_278',·['densityfittingamplitudelookup',·['../classgmx_1_1DensityFittingAmplitudeLookup.xhtml#a59fc899181bcc2e39969fa553087444d',·1,·'gmx::DensityFittingAmplitudeLookup::DensityFittingAmplitudeLookup(const·DensityFittingAmplitudeMethod·&amp;method)'],
451 ········['../classgmx_1_1DensityFittingAmplitudeLookup.xhtml#aa1d2f04d8d7aae3d5622cd859a201cbb',·1,·'gmx::DensityFittingAmplitudeLookup::DensityFittingAmplitudeLookup(const·DensityFittingAmplitudeLookup·&amp;other)'],451 ········['../classgmx_1_1DensityFittingAmplitudeLookup.xhtml#aa1d2f04d8d7aae3d5622cd859a201cbb',·1,·'gmx::DensityFittingAmplitudeLookup::DensityFittingAmplitudeLookup(const·DensityFittingAmplitudeLookup·&amp;other)'],
452 ········['../classgmx_1_1DensityFittingAmplitudeLookup.xhtml#a59fc899181bcc2e39969fa553087444d',·1,·'gmx::DensityFittingAmplitudeLookup::DensityFittingAmplitudeLookup(const·DensityFittingAmplitudeMethod·&amp;method)'],452 ········['../classgmx_1_1DensityFittingAmplitudeLookup.xhtml#ab390de4a90d3b122cc6d54862bfc158f',·1,·'gmx::DensityFittingAmplitudeLookup::DensityFittingAmplitudeLookup(DensityFittingAmplitudeLookup·&amp;&amp;other)·noexcept'],
453 ········['../classgmx_1_1DensityFittingAmplitudeLookup.xhtml',·1,·'gmx::DensityFittingAmplitudeLookup']453 ········['../classgmx_1_1DensityFittingAmplitudeLookup.xhtml',·1,·'gmx::DensityFittingAmplitudeLookup']
454 ····]],454 ····]],
455 ····['densityfittingamplitudelookup_2ecpp_279',·['densityfittingamplitudelookup.cpp',·['../densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)'],455 ····['densityfittingamplitudelookup_2ecpp_279',·['densityfittingamplitudelookup.cpp',·['../densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)'],
456 ········['../tests_2densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)']456 ········['../tests_2densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)']
457 ····]],457 ····]],
458 ····['densityfittingamplitudelookup_2eh_280',·['densityfittingamplitudelookup.h',·['../densityfittingamplitudelookup_8h.xhtml',·1,·'']]],458 ····['densityfittingamplitudelookup_2eh_280',·['densityfittingamplitudelookup.h',·['../densityfittingamplitudelookup_8h.xhtml',·1,·'']]],
459 ····['densityfittingamplitudemethod_281',·['DensityFittingAmplitudeMethod',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099f',·1,·'gmx']]],459 ····['densityfittingamplitudemethod_281',·['DensityFittingAmplitudeMethod',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099f',·1,·'gmx']]],
460 ····['densityfittingforce_282',·['densityfittingforce',·['../classgmx_1_1DensityFittingForce.xhtml#acf7150b3a47e6878c27e70500c221d4a',·1,·'gmx::DensityFittingForce::DensityFittingForce()'],460 ····['densityfittingforce_282',·['densityfittingforce',·['../classgmx_1_1DensityFittingForce.xhtml#acf7150b3a47e6878c27e70500c221d4a',·1,·'gmx::DensityFittingForce::DensityFittingForce(const·GaussianSpreadKernelParameters::Shape·&amp;kernelShapeParameters)'],
461 ········['../classgmx_1_1DensityFittingForce.xhtml',·1,·'gmx::DensityFittingForce'], 
462 ········['../classgmx_1_1DensityFittingForce.xhtml#a4515397cbc5ab594e8e9066302e02eca',·1,·'gmx::DensityFittingForce::DensityFittingForce(const·DensityFittingForce·&amp;other)'],461 ········['../classgmx_1_1DensityFittingForce.xhtml#a4515397cbc5ab594e8e9066302e02eca',·1,·'gmx::DensityFittingForce::DensityFittingForce(const·DensityFittingForce·&amp;other)'],
463 ········['../classgmx_1_1DensityFittingForce.xhtml#a3eab6d07afa82b211179207e74072ff0',·1,·'gmx::DensityFittingForce::DensityFittingForce(DensityFittingForce·&amp;&amp;other)·noexcept']462 ········['../classgmx_1_1DensityFittingForce.xhtml#a3eab6d07afa82b211179207e74072ff0',·1,·'gmx::DensityFittingForce::DensityFittingForce(DensityFittingForce·&amp;&amp;other)·noexcept'],
 463 ········['../classgmx_1_1DensityFittingForce.xhtml',·1,·'gmx::DensityFittingForce']
464 ····]],464 ····]],
465 ····['densityfittingforce_2ecpp_283',·['densityfittingforce.cpp',·['../densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)'],465 ····['densityfittingforce_2ecpp_283',·['densityfittingforce.cpp',·['../densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)'],
466 ········['../tests_2densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)']466 ········['../tests_2densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)']
467 ····]],467 ····]],
468 ····['densityfittingforce_2eh_284',·['densityfittingforce.h',·['../densityfittingforce_8h.xhtml',·1,·'']]],468 ····['densityfittingforce_2eh_284',·['densityfittingforce.h',·['../densityfittingforce_8h.xhtml',·1,·'']]],
469 ····['densityfittingforceprovider_285',·['densityfittingforceprovider',·['../classgmx_1_1DensityFittingForceProvider.xhtml',·1,·'gmx::DensityFittingForceProvider'],469 ····['densityfittingforceprovider_285',·['densityfittingforceprovider',·['../classgmx_1_1DensityFittingForceProvider.xhtml#a99f34ce28c7c4b269fe7b9cc0c61c255',·1,·'gmx::DensityFittingForceProvider::DensityFittingForceProvider()'],
470 ········['../classgmx_1_1DensityFittingForceProvider.xhtml#a99f34ce28c7c4b269fe7b9cc0c61c255',·1,·'gmx::DensityFittingForceProvider::DensityFittingForceProvider()']470 ········['../classgmx_1_1DensityFittingForceProvider.xhtml',·1,·'gmx::DensityFittingForceProvider']
471 ····]],471 ····]],
472 ····['densityfittingforceprovider_2ecpp_286',·['densityfittingforceprovider.cpp',·['../tests_2densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],472 ····['densityfittingforceprovider_2ecpp_286',·['densityfittingforceprovider.cpp',·['../tests_2densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],
473 ········['../densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']473 ········['../densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']
474 ····]],474 ····]],
475 ····['densityfittingforceprovider_2eh_287',·['densityfittingforceprovider.h',·['../densityfittingforceprovider_8h.xhtml',·1,·'']]],475 ····['densityfittingforceprovider_2eh_287',·['densityfittingforceprovider.h',·['../densityfittingforceprovider_8h.xhtml',·1,·'']]],
476 ····['densityfittingforceproviderstate_288',·['DensityFittingForceProviderState',·['../structgmx_1_1DensityFittingForceProviderState.xhtml',·1,·'gmx']]],476 ····['densityfittingforceproviderstate_288',·['DensityFittingForceProviderState',·['../structgmx_1_1DensityFittingForceProviderState.xhtml',·1,·'gmx']]],
477 ····['densityfittingmdptransformfromstring_289',·['densityfittingMdpTransformFromString',·['../namespacegmx_1_1anonymous__namespace_02densityfittingoptions_8cpp_03.xhtml#ad01120df989f6892f2b3716de8220d89',·1,·'gmx::anonymous_namespace{densityfittingoptions.cpp}']]],477 ····['densityfittingmdptransformfromstring_289',·['densityfittingMdpTransformFromString',·['../namespacegmx_1_1anonymous__namespace_02densityfittingoptions_8cpp_03.xhtml#ad01120df989f6892f2b3716de8220d89',·1,·'gmx::anonymous_namespace{densityfittingoptions.cpp}']]],
Offset 549, 16 lines modifiedOffset 549, 16 lines modified
549 ········['../devicebuffer__ocl_8h.xhtml#a008d8a7fc47c0b7d231d7b7ca91e928f',·1,·'destroyParamLookupTable(DeviceBuffer&lt;·ValueType·&gt;·*deviceBuffer,·const·DeviceTexture·&amp;):&#160;devicebuffer_ocl.h'],549 ········['../devicebuffer__ocl_8h.xhtml#a008d8a7fc47c0b7d231d7b7ca91e928f',·1,·'destroyParamLookupTable(DeviceBuffer&lt;·ValueType·&gt;·*deviceBuffer,·const·DeviceTexture·&amp;):&#160;devicebuffer_ocl.h'],
550 ········['../devicebuffer__hip_8h.xhtml#abd742276694c5675ade1493d16e92a3d',·1,·'destroyParamLookupTable(DeviceBuffer&lt;·ValueType·&gt;·*deviceBuffer,·const·DeviceTexture·*):&#160;devicebuffer_hip.h']550 ········['../devicebuffer__hip_8h.xhtml#abd742276694c5675ade1493d16e92a3d',·1,·'destroyParamLookupTable(DeviceBuffer&lt;·ValueType·&gt;·*deviceBuffer,·const·DeviceTexture·*):&#160;devicebuffer_hip.h']
551 ····]],551 ····]],
552 ····['details_325',·['details',·['../page_usinglibrary.xhtml#autotoc_md104',·1,·'CMake·&lt;tt&gt;find_package(GROMACS)&lt;/tt&gt;·details'],552 ····['details_325',·['details',·['../page_usinglibrary.xhtml#autotoc_md104',·1,·'CMake·&lt;tt&gt;find_package(GROMACS)&lt;/tt&gt;·details'],
553 ········['../page_modularsimulator.xhtml#autotoc_md43',·1,·'Implementation·details'],553 ········['../page_modularsimulator.xhtml#autotoc_md43',·1,·'Implementation·details'],
554 ········['../page_modularsimulator.xhtml#autotoc_md20',·1,·'Signaller·and·element·details']554 ········['../page_modularsimulator.xhtml#autotoc_md20',·1,·'Signaller·and·element·details']
555 ····]],555 ····]],
 556 ····['detect_326',·['detect',·['../classgmx_1_1CpuInfo.xhtml#ab39e3eb5227a07cf048b337c47f77c97',·1,·'gmx::CpuInfo::detect()'],
556 ····['detect_326',·['detect',·['../classgmx_1_1HardwareTopology.xhtml#a8da17cbedfcbc71ca857ff58cdafd4df',·1,·'gmx::HardwareTopology::detect()'],557 ········['../classgmx_1_1HardwareTopology.xhtml#a8da17cbedfcbc71ca857ff58cdafd4df',·1,·'gmx::HardwareTopology::detect()']
557 ········['../classgmx_1_1CpuInfo.xhtml#ab39e3eb5227a07cf048b337c47f77c97',·1,·'gmx::CpuInfo::detect()'] 
558 ····]],558 ····]],
559 ····['detect_5fflux_5fper_5fchannel_327',·['detect_flux_per_channel',·['../gromacs_2swap_2swapcoords_8cpp.xhtml#a48abd5d72f9b32a001091674c191cd21',·1,·'swapcoords.cpp']]],559 ····['detect_5fflux_5fper_5fchannel_327',·['detect_flux_per_channel',·['../gromacs_2swap_2swapcoords_8cpp.xhtml#a48abd5d72f9b32a001091674c191cd21',·1,·'swapcoords.cpp']]],
560 ····['detect_5fflux_5fper_5fchannel_5finit_328',·['detect_flux_per_channel_init',·['../gromacs_2swap_2swapcoords_8cpp.xhtml#a9e04e622bec9416e9b5b6cd593401ec8',·1,·'swapcoords.cpp']]],560 ····['detect_5fflux_5fper_5fchannel_5finit_328',·['detect_flux_per_channel_init',·['../gromacs_2swap_2swapcoords_8cpp.xhtml#a9e04e622bec9416e9b5b6cd593401ec8',·1,·'swapcoords.cpp']]],
561 ····['detectalldeviceinformation_329',·['detectAllDeviceInformation',·['../namespacegmx.xhtml#a5e9915c072ef3d19a4cccfdcd14b31f2',·1,·'gmx']]],561 ····['detectalldeviceinformation_329',·['detectAllDeviceInformation',·['../namespacegmx.xhtml#a5e9915c072ef3d19a4cccfdcd14b31f2',·1,·'gmx']]],
562 ····['detectamdapicidlayout_330',·['detectAmdApicIdLayout',·['../namespacegmx_1_1anonymous__namespace_02cpuinfo_8cpp_03.xhtml#aba97bd2744c1dae8d09128ba04728b59',·1,·'gmx::anonymous_namespace{cpuinfo.cpp}']]],562 ····['detectamdapicidlayout_330',·['detectAmdApicIdLayout',·['../namespacegmx_1_1anonymous__namespace_02cpuinfo_8cpp_03.xhtml#aba97bd2744c1dae8d09128ba04728b59',·1,·'gmx::anonymous_namespace{cpuinfo.cpp}']]],
563 ····['detectgroup_331',·['detectGroup',·['../namespacegmx.xhtml#aa10b9e2cfb6848642822710aa572c068',·1,·'gmx']]],563 ····['detectgroup_331',·['detectGroup',·['../namespacegmx.xhtml#aa10b9e2cfb6848642822710aa572c068',·1,·'gmx']]],
564 ····['detectlogicalprocessorcount_332',·['detectLogicalProcessorCount',·['../namespacegmx_1_1anonymous__namespace_02hardwaretopology_8cpp_03.xhtml#af1aa0e7fca2b547c7830b8a8af6a0fe7',·1,·'gmx::anonymous_namespace{hardwaretopology.cpp}']]],564 ····['detectlogicalprocessorcount_332',·['detectLogicalProcessorCount',·['../namespacegmx_1_1anonymous__namespace_02hardwaretopology_8cpp_03.xhtml#af1aa0e7fca2b547c7830b8a8af6a0fe7',·1,·'gmx::anonymous_namespace{hardwaretopology.cpp}']]],
Offset 615, 17 lines modifiedOffset 615, 17 lines modified
615 ····['devicebuffer_2eh_379',·['devicebuffer.h',·['../devicebuffer_8h.xhtml',·1,·'']]],615 ····['devicebuffer_2eh_379',·['devicebuffer.h',·['../devicebuffer_8h.xhtml',·1,·'']]],
616 ····['devicebuffer_5fdatatype_2eh_380',·['devicebuffer_datatype.h',·['../devicebuffer__datatype_8h.xhtml',·1,·'']]],616 ····['devicebuffer_5fdatatype_2eh_380',·['devicebuffer_datatype.h',·['../devicebuffer__datatype_8h.xhtml',·1,·'']]],
617 ····['devicebuffer_5fhip_2eh_381',·['devicebuffer_hip.h',·['../devicebuffer__hip_8h.xhtml',·1,·'']]],617 ····['devicebuffer_5fhip_2eh_381',·['devicebuffer_hip.h',·['../devicebuffer__hip_8h.xhtml',·1,·'']]],
618 ····['devicebuffer_5focl_2eh_382',·['devicebuffer_ocl.h',·['../devicebuffer__ocl_8h.xhtml',·1,·'']]],618 ····['devicebuffer_5focl_2eh_382',·['devicebuffer_ocl.h',·['../devicebuffer__ocl_8h.xhtml',·1,·'']]],
619 ····['devicebuffer_5fsycl_2ecpp_383',·['devicebuffer_sycl.cpp',·['../devicebuffer__sycl_8cpp.xhtml',·1,·'']]],619 ····['devicebuffer_5fsycl_2ecpp_383',·['devicebuffer_sycl.cpp',·['../devicebuffer__sycl_8cpp.xhtml',·1,·'']]],
620 ····['devicebuffer_5fsycl_2eh_384',·['devicebuffer_sycl.h',·['../devicebuffer__sycl_8h.xhtml',·1,·'']]],620 ····['devicebuffer_5fsycl_2eh_384',·['devicebuffer_sycl.h',·['../devicebuffer__sycl_8h.xhtml',·1,·'']]],
621 ····['devicecontext_385',·['deviceContext',·['../classgmx_1_1test_1_1TestDevice.xhtml#a5504f4f98233c6c79ca89260e6bd8b52',·1,·'gmx::test::TestDevice']]],621 ····['devicecontext_385',·['deviceContext',·['../classgmx_1_1test_1_1TestDevice.xhtml#a5504f4f98233c6c79ca89260e6bd8b52',·1,·'gmx::test::TestDevice']]],
 622 ····['devicecontext_5f_386',·['devicecontext_',·['../structgmx_1_1NbnxmGpu.xhtml#a354d2abc5057b9ae41acedbea709b546',·1,·'gmx::NbnxmGpu::deviceContext_'],
622 ····['devicecontext_5f_386',·['devicecontext_',·['../structPmeGpuSpecific.xhtml#a2cfc9ed1971e758d743666d0927298a4',·1,·'PmeGpuSpecific::deviceContext_'],623 ········['../structPmeGpuSpecific.xhtml#a2cfc9ed1971e758d743666d0927298a4',·1,·'PmeGpuSpecific::deviceContext_'],
623 ········['../structPmeGpuProgramImpl.xhtml#a66a06da4b90e1190c0655dcca3a17601',·1,·'PmeGpuProgramImpl::deviceContext_'],624 ········['../structPmeGpuProgramImpl.xhtml#a66a06da4b90e1190c0655dcca3a17601',·1,·'PmeGpuProgramImpl::deviceContext_']
624 ········['../structgmx_1_1NbnxmGpu.xhtml#a354d2abc5057b9ae41acedbea709b546',·1,·'gmx::NbnxmGpu::deviceContext_'] 
625 ····]],625 ····]],
626 ····['devicedetectionresult_387',·['DeviceDetectionResult',·['../structgmx_1_1DeviceDetectionResult.xhtml',·1,·'gmx']]],626 ····['devicedetectionresult_387',·['DeviceDetectionResult',·['../structgmx_1_1DeviceDetectionResult.xhtml',·1,·'gmx']]],
627 ····['devicedetectionwarnings_5f_388',·['deviceDetectionWarnings_',·['../structgmx_1_1DeviceDetectionResult.xhtml#a3fd6f9092f6ee7dc883486122ec291ff',·1,·'gmx::DeviceDetectionResult']]],627 ····['devicedetectionwarnings_5f_388',·['deviceDetectionWarnings_',·['../structgmx_1_1DeviceDetectionResult.xhtml#a3fd6f9092f6ee7dc883486122ec291ff',·1,·'gmx::DeviceDetectionResult']]],
628 ····['deviceid_389',·['deviceId',·['../structgmx_1_1HardwareTopology_1_1Device.xhtml#ae55290832a54a102c9817da6d278c499',·1,·'gmx::HardwareTopology::Device']]],628 ····['deviceid_389',·['deviceId',·['../structgmx_1_1HardwareTopology_1_1Device.xhtml#ae55290832a54a102c9817da6d278c499',·1,·'gmx::HardwareTopology::Device']]],
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630 ····['deviceidiscompatible_391',·['deviceidiscompatible',·['../device__management_8h.xhtml#a18842fc46a07885afa6447974760fb74',·1,·'deviceIdIsCompatible(gmx::ArrayRef&lt;·const·std::unique_ptr&lt;·DeviceInformation·&gt;·&gt;·deviceInfoList,·int·deviceId):&#160;device_management_common.cpp'],630 ····['deviceidiscompatible_391',·['deviceidiscompatible',·['../device__management_8h.xhtml#a18842fc46a07885afa6447974760fb74',·1,·'deviceIdIsCompatible(gmx::ArrayRef&lt;·const·std::unique_ptr&lt;·DeviceInformation·&gt;·&gt;·deviceInfoList,·int·deviceId):&#160;device_management_common.cpp'],
631 ········['../device__management__common_8cpp.xhtml#a1f2e8f81e5eede997aecb392dfbfbe94',·1,·'deviceIdIsCompatible(gmx::ArrayRef&lt;·const·std::unique_ptr&lt;·DeviceInformation·&gt;·&gt;·deviceInfoList,·const·int·deviceId):&#160;device_management_common.cpp']631 ········['../device__management__common_8cpp.xhtml#a1f2e8f81e5eede997aecb392dfbfbe94',·1,·'deviceIdIsCompatible(gmx::ArrayRef&lt;·const·std::unique_ptr&lt;·DeviceInformation·&gt;·&gt;·deviceInfoList,·const·int·deviceId):&#160;device_management_common.cpp']
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646 ····]],646 ····]],
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648 ········['../classgmx_1_1DeviceStreamManager.xhtml#af4af89575a6d318fe0d107f74df07122',·1,·'gmx::DeviceStreamManager::DeviceStreamManager()']648 ········['../classgmx_1_1DeviceStreamManager.xhtml#af4af89575a6d318fe0d107f74df07122',·1,·'gmx::DeviceStreamManager::DeviceStreamManager()']
649 ····]],649 ····]],
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651 ····['devicestreampriority_403',·['DeviceStreamPriority',·['../device__stream_8h.xhtml#a745c3a25d092600ae45b68d7e73d8319',·1,·'device_stream.h']]],651 ····['devicestreampriority_403',·['DeviceStreamPriority',·['../device__stream_8h.xhtml#a745c3a25d092600ae45b68d7e73d8319',·1,·'device_stream.h']]],
652 ····['devicestreams_404',·['devicestreams',·['../structgmx_1_1NbnxmGpu.xhtml#a9f4f1a3ba3ed65bf0bd2220431f776c9',·1,·'gmx::NbnxmGpu::deviceStreams'], 
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133 ····['elecewald_121',·['elecEwald',·['../structgmx_1_1EnergyFunctionProperties.xhtml#a3bb682c07204faab64701f7a264bcf50',·1,·'gmx::EnergyFunctionProperties']]],133 ····['elecewald_121',·['elecEwald',·['../structgmx_1_1EnergyFunctionProperties.xhtml#a3bb682c07204faab64701f7a264bcf50',·1,·'gmx::EnergyFunctionProperties']]],
134 ····['elecewaldana_122',·['elecEwaldAna',·['../structgmx_1_1EnergyFunctionProperties.xhtml#a7cd59edb314261f159984304364b8b83',·1,·'gmx::EnergyFunctionProperties']]],134 ····['elecewaldana_122',·['elecEwaldAna',·['../structgmx_1_1EnergyFunctionProperties.xhtml#a7cd59edb314261f159984304364b8b83',·1,·'gmx::EnergyFunctionProperties']]],
135 ····['elecewaldtab_123',·['elecEwaldTab',·['../structgmx_1_1EnergyFunctionProperties.xhtml#a3dcceed8fc37c68d8a2e13538fc78f1f',·1,·'gmx::EnergyFunctionProperties']]],135 ····['elecewaldtab_123',·['elecEwaldTab',·['../structgmx_1_1EnergyFunctionProperties.xhtml#a3dcceed8fc37c68d8a2e13538fc78f1f',·1,·'gmx::EnergyFunctionProperties']]],
136 ····['elecewaldtwin_124',·['elecEwaldTwin',·['../structgmx_1_1EnergyFunctionProperties.xhtml#a8924d386afd3ee5ad5a49c3799ea5efe',·1,·'gmx::EnergyFunctionProperties']]],136 ····['elecewaldtwin_124',·['elecEwaldTwin',·['../structgmx_1_1EnergyFunctionProperties.xhtml#a8924d386afd3ee5ad5a49c3799ea5efe',·1,·'gmx::EnergyFunctionProperties']]],
137 ····['elecrf_125',·['elecRF',·['../structgmx_1_1EnergyFunctionProperties.xhtml#ab4d5fb5fe3bc3305d139e637060457a7',·1,·'gmx::EnergyFunctionProperties']]],137 ····['elecrf_125',·['elecRF',·['../structgmx_1_1EnergyFunctionProperties.xhtml#ab4d5fb5fe3bc3305d139e637060457a7',·1,·'gmx::EnergyFunctionProperties']]],
138 ····['electricfield_126',·['ElectricField',·['../classgmx_1_1anonymous__namespace_02electricfield_8cpp_03_1_1ElectricField.xhtml',·1,·'gmx::anonymous_namespace{electricfield.cpp}']]],138 ····['electricfield_126',·['ElectricField',·['../classgmx_1_1anonymous__namespace_02electricfield_8cpp_03_1_1ElectricField.xhtml',·1,·'gmx::anonymous_namespace{electricfield.cpp}']]],
139 ····['electricfield_2ecpp_127',·['electricfield.cpp',·['../electricfield_8cpp.xhtml',·1,·'(Global·Namespace)'],139 ····['electricfield_2ecpp_127',·['electricfield.cpp',·['../tests_2electricfield_8cpp.xhtml',·1,·'(Global·Namespace)'],
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143 ····['electricfielddimension_129',·['ElectricFieldDimension',·['../classgmx_1_1anonymous__namespace_02electricfield_8cpp_03_1_1ElectricFieldDimension.xhtml',·1,·'gmx::anonymous_namespace{electricfield.cpp}']]],143 ····['electricfielddimension_129',·['ElectricFieldDimension',·['../classgmx_1_1anonymous__namespace_02electricfield_8cpp_03_1_1ElectricFieldDimension.xhtml',·1,·'gmx::anonymous_namespace{electricfield.cpp}']]],
144 ····['electrophysiology_20position_20swapping_20swap_130',·['&quot;Computational·Electrophysiology&quot;·position·swapping·(swap)',·['../group__module__swap.xhtml',·1,·'']]],144 ····['electrophysiology_20position_20swapping_20swap_130',·['&quot;Computational·Electrophysiology&quot;·position·swapping·(swap)',·['../group__module__swap.xhtml',·1,·'']]],
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146 ········['../namespacegmx.xhtml#a9b1e5351eeecaeb1a7f02e83888b3e75',·1,·'gmx::ElecType'],146 ········['../namespacegmx.xhtml#a9b1e5351eeecaeb1a7f02e83888b3e75',·1,·'gmx::ElecType'],
147 ········['../structgmx_1_1NBParamGpu.xhtml#a6d3f74d9410ed41c4c8284dbf44c374d',·1,·'gmx::NBParamGpu::elecType']147 ········['../structgmx_1_1NBParamGpu.xhtml#a6d3f74d9410ed41c4c8284dbf44c374d',·1,·'gmx::NBParamGpu::elecType']
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267 ········['../classgmx_1_1FreeEnergyPerturbationData_1_1Element.xhtml#a8d891ed09cdc529b8b91023c5fe54ac7',·1,·'gmx::FreeEnergyPerturbationData::Element::enableExternalFepStateSetting()']267 ········['../classgmx_1_1FreeEnergyPerturbationData_1_1Element.xhtml#a8d891ed09cdc529b8b91023c5fe54ac7',·1,·'gmx::FreeEnergyPerturbationData::Element::enableExternalFepStateSetting()']
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270 ····['enablegpupmedecomposition_165',·['enableGpuPmeDecomposition',·['../structgmx_1_1DevelopmentFeatureFlags.xhtml#a04cfda43ef27edf7b7843ba78f183a81',·1,·'gmx::DevelopmentFeatureFlags']]],270 ····['enablegpupmedecomposition_165',·['enableGpuPmeDecomposition',·['../structgmx_1_1DevelopmentFeatureFlags.xhtml#a04cfda43ef27edf7b7843ba78f183a81',·1,·'gmx::DevelopmentFeatureFlags']]],
271 ····['enablenvshmem_166',·['enableNvshmem',·['../structgmx_1_1DevelopmentFeatureFlags.xhtml#ae0c857b2cd89caa0d9c6b0da311083a7',·1,·'gmx::DevelopmentFeatureFlags']]],271 ····['enablenvshmem_166',·['enableNvshmem',·['../structgmx_1_1DevelopmentFeatureFlags.xhtml#ae0c857b2cd89caa0d9c6b0da311083a7',·1,·'gmx::DevelopmentFeatureFlags']]],
272 ····['encodedvalue_167',·['encodedValue',·['../namespacegmx_1_1test_1_1anonymous__namespace_02haloexchange__mpi_8cpp_03.xhtml#a777c050279cadf1f42c3145b123bd13c',·1,·'gmx::test::anonymous_namespace{haloexchange_mpi.cpp}']]],272 ····['encodedvalue_167',·['encodedValue',·['../namespacegmx_1_1test_1_1anonymous__namespace_02haloexchange__mpi_8cpp_03.xhtml#a777c050279cadf1f42c3145b123bd13c',·1,·'gmx::test::anonymous_namespace{haloexchange_mpi.cpp}']]],
273 ····['end_168',·['end',·['../classWorkDivision.xhtml#a55b972ca8118361804f650ae4fd70f77',·1,·'WorkDivision::end()'], 
274 ········['../classgmx_1_1Range.xhtml#a5f692bf991d88d90ed8e33cc29a1cc51',·1,·'gmx::Range::end()'],273 ····['end_168',·['end',·['../classgmx_1_1Range.xhtml#a5f692bf991d88d90ed8e33cc29a1cc51',·1,·'gmx::Range::end()'],
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276 ········['../classgmx_1_1FixedCapacityVector.xhtml#a0ce73444d0fb3143d0af6a5f8b3ab1c1',·1,·'gmx::FixedCapacityVector::end()·noexcept'],275 ········['../classgmx_1_1FixedCapacityVector.xhtml#a0ce73444d0fb3143d0af6a5f8b3ab1c1',·1,·'gmx::FixedCapacityVector::end()·noexcept'],
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687 ····['eticoul_394',·['etiCOUL',·['../forcetable_8h.xhtml#a9334a5b9057f32da96db9b5c6a045d67a22814a4fa63720f5c6b6008dbceb4781',·1,·'forcetable.h']]],687 ····['eticoul_394',·['etiCOUL',·['../forcetable_8h.xhtml#a9334a5b9057f32da96db9b5c6a045d67a22814a4fa63720f5c6b6008dbceb4781',·1,·'forcetable.h']]],
688 ····['etilj12_395',·['etiLJ12',·['../forcetable_8h.xhtml#a9334a5b9057f32da96db9b5c6a045d67abd1f60de18c1a08fbbf8f701f18bc5dc',·1,·'forcetable.h']]],688 ····['etilj12_395',·['etiLJ12',·['../forcetable_8h.xhtml#a9334a5b9057f32da96db9b5c6a045d67abd1f60de18c1a08fbbf8f701f18bc5dc',·1,·'forcetable.h']]],
689 ····['etilj6_396',·['etiLJ6',·['../forcetable_8h.xhtml#a9334a5b9057f32da96db9b5c6a045d67a14de69e4e7dd8738916c6965be9a3b90',·1,·'forcetable.h']]],689 ····['etilj6_396',·['etiLJ6',·['../forcetable_8h.xhtml#a9334a5b9057f32da96db9b5c6a045d67a14de69e4e7dd8738916c6965be9a3b90',·1,·'forcetable.h']]],
690 ····['etinr_397',·['etiNR',·['../forcetable_8h.xhtml#a9334a5b9057f32da96db9b5c6a045d67aefe23a4b7521eb5cf444aa993db19829',·1,·'forcetable.h']]],690 ····['etinr_397',·['etiNR',·['../forcetable_8h.xhtml#a9334a5b9057f32da96db9b5c6a045d67aefe23a4b7521eb5cf444aa993db19829',·1,·'forcetable.h']]],
 691 ····['evaluate_398',·['evaluate',·['../classgmx_1_1SelectionCollection.xhtml#a3d981d35e2fbd35f64092063871fdef3',·1,·'gmx::SelectionCollection::evaluate()'],
 692 ········['../classgmx_1_1IRestraintPotential.xhtml#abd785aca4a7790377720f445e8263ffb',·1,·'gmx::IRestraintPotential::evaluate()'],
691 ····['evaluate_398',·['evaluate',·['../structt__compiler__data.xhtml#a5128b3f090d5c7fb2eb867570e89fe3b',·1,·'t_compiler_data::evaluate'],693 ········['../structt__compiler__data.xhtml#a5128b3f090d5c7fb2eb867570e89fe3b',·1,·'t_compiler_data::evaluate'],
 694 ········['../classgmx_1_1SelectionEvaluator.xhtml#ad86f6b06a9c14294732430b01329e0af',·1,·'gmx::SelectionEvaluator::evaluate()'],
692 ········['../classgmx_1_1SelectionTreeElement.xhtml#aa2729334e9625ab9446f87dee5e2acf4',·1,·'gmx::SelectionTreeElement::evaluate'],695 ········['../classgmx_1_1SelectionTreeElement.xhtml#aa2729334e9625ab9446f87dee5e2acf4',·1,·'gmx::SelectionTreeElement::evaluate'],
693 ········['../classgmx_1_1anonymous__namespace_02electricfield_8cpp_03_1_1ElectricFieldDimension.xhtml#a0601d30a0ad2f0ca3cbdd80929d66ad1',·1,·'gmx::anonymous_namespace{electricfield.cpp}::ElectricFieldDimension::evaluate()'],696 ········['../classgmx_1_1anonymous__namespace_02electricfield_8cpp_03_1_1ElectricFieldDimension.xhtml#a0601d30a0ad2f0ca3cbdd80929d66ad1',·1,·'gmx::anonymous_namespace{electricfield.cpp}::ElectricFieldDimension::evaluate()'],
694 ········['../classgmx_1_1PullCoordExpressionParser.xhtml#aedf144756d7dd044b691f937f05ed07a',·1,·'gmx::PullCoordExpressionParser::evaluate()'],697 ········['../classgmx_1_1PullCoordExpressionParser.xhtml#aedf144756d7dd044b691f937f05ed07a',·1,·'gmx::PullCoordExpressionParser::evaluate()']
695 ········['../classgmx_1_1SelectionEvaluator.xhtml#ad86f6b06a9c14294732430b01329e0af',·1,·'gmx::SelectionEvaluator::evaluate()'], 
696 ········['../classgmx_1_1IRestraintPotential.xhtml#abd785aca4a7790377720f445e8263ffb',·1,·'gmx::IRestraintPotential::evaluate()'], 
697 ········['../classgmx_1_1SelectionCollection.xhtml#a3d981d35e2fbd35f64092063871fdef3',·1,·'gmx::SelectionCollection::evaluate()'] 
698 ····]],698 ····]],
699 ····['evaluate_2ecpp_399',·['evaluate.cpp',·['../evaluate_8cpp.xhtml',·1,·'']]],699 ····['evaluate_2ecpp_399',·['evaluate.cpp',·['../evaluate_8cpp.xhtml',·1,·'']]],
700 ····['evaluate_2eh_400',·['evaluate.h',·['../evaluate_8h.xhtml',·1,·'']]],700 ····['evaluate_2eh_400',·['evaluate.h',·['../evaluate_8h.xhtml',·1,·'']]],
701 ····['evaluate_5fall_401',·['evaluate_all',·['../sm__simple_8cpp.xhtml#ab5d9aaa1591fbf99ef54f35c930d876f',·1,·'sm_simple.cpp']]],701 ····['evaluate_5fall_401',·['evaluate_all',·['../sm__simple_8cpp.xhtml#ab5d9aaa1591fbf99ef54f35c930d876f',·1,·'sm_simple.cpp']]],
702 ····['evaluate_5faltloc_402',·['evaluate_altloc',·['../sm__simple_8cpp.xhtml#ac95693c16cf861f2aba6655c0ff6f0d2',·1,·'sm_simple.cpp']]],702 ····['evaluate_5faltloc_402',·['evaluate_altloc',·['../sm__simple_8cpp.xhtml#ac95693c16cf861f2aba6655c0ff6f0d2',·1,·'sm_simple.cpp']]],
703 ····['evaluate_5fatomname_403',·['evaluate_atomname',·['../sm__simple_8cpp.xhtml#ad8d60c137d3bdb4cc2ef7458abdadfa5',·1,·'sm_simple.cpp']]],703 ····['evaluate_5fatomname_403',·['evaluate_atomname',·['../sm__simple_8cpp.xhtml#ad8d60c137d3bdb4cc2ef7458abdadfa5',·1,·'sm_simple.cpp']]],
704 ····['evaluate_5fatomnr_404',·['evaluate_atomnr',·['../sm__simple_8cpp.xhtml#ac012c9061ab901e7085b9e6be0b0dfb1',·1,·'sm_simple.cpp']]],704 ····['evaluate_5fatomnr_404',·['evaluate_atomnr',·['../sm__simple_8cpp.xhtml#ac012c9061ab901e7085b9e6be0b0dfb1',·1,·'sm_simple.cpp']]],
Offset 738, 42 lines modifiedOffset 738, 42 lines modified
738 ····['evaluate_5fsingle_438',·['evaluate_single',·['../pairs_8cpp.xhtml#a53338e7f9d3499aabdf8f25c6af5f238',·1,·'pairs.cpp']]],738 ····['evaluate_5fsingle_438',·['evaluate_single',·['../pairs_8cpp.xhtml#a53338e7f9d3499aabdf8f25c6af5f238',·1,·'pairs.cpp']]],
739 ····['evaluate_5fwithin_439',·['evaluate_within',·['../sm__distance_8cpp.xhtml#a085423b7b3380c50dc2c2aa0042070fe',·1,·'sm_distance.cpp']]],739 ····['evaluate_5fwithin_439',·['evaluate_within',·['../sm__distance_8cpp.xhtml#a085423b7b3380c50dc2c2aa0042070fe',·1,·'sm_distance.cpp']]],
740 ····['evaluate_5fx_440',·['evaluate_x',·['../sm__simple_8cpp.xhtml#ab0e74f5a11a8275423b617bbc8d247dc',·1,·'sm_simple.cpp']]],740 ····['evaluate_5fx_440',·['evaluate_x',·['../sm__simple_8cpp.xhtml#ab0e74f5a11a8275423b617bbc8d247dc',·1,·'sm_simple.cpp']]],
741 ····['evaluate_5fy_441',·['evaluate_y',·['../sm__simple_8cpp.xhtml#ac7586817f1b4032087aa7b625224757c',·1,·'sm_simple.cpp']]],741 ····['evaluate_5fy_441',·['evaluate_y',·['../sm__simple_8cpp.xhtml#ac7586817f1b4032087aa7b625224757c',·1,·'sm_simple.cpp']]],
742 ····['evaluate_5fz_442',·['evaluate_z',·['../sm__simple_8cpp.xhtml#ac69865bb371f6f50ed83c06fb0cf5531',·1,·'sm_simple.cpp']]],742 ····['evaluate_5fz_442',·['evaluate_z',·['../sm__simple_8cpp.xhtml#ac69865bb371f6f50ed83c06fb0cf5531',·1,·'sm_simple.cpp']]],
743 ····['evaluatecontractionpoint_443',·['evaluateContractionPoint',·['../classgmx_1_1NelderMeadSimplex.xhtml#a46d235715a1174267e45aebae8beb0c7',·1,·'gmx::NelderMeadSimplex']]],743 ····['evaluatecontractionpoint_443',·['evaluateContractionPoint',·['../classgmx_1_1NelderMeadSimplex.xhtml#a46d235715a1174267e45aebae8beb0c7',·1,·'gmx::NelderMeadSimplex']]],
744 ····['evaluated_444',·['Evaluated',·['../classgmx_1_1SelectionCollection_1_1Impl.xhtml#a2b56c1edc3a7dd352db9cf7bc94673d7ad603de8be2ed385509ef70a6c0099623',·1,·'gmx::SelectionCollection::Impl']]],744 ····['evaluated_444',·['Evaluated',·['../classgmx_1_1SelectionCollection_1_1Impl.xhtml#a2b56c1edc3a7dd352db9cf7bc94673d7ad603de8be2ed385509ef70a6c0099623',·1,·'gmx::SelectionCollection::Impl']]],
745 ····['evaluatederivative_445',·['evaluatederivative',·['../classgmx_1_1QuadraticSplineTable.xhtml#aa9e7cfaa0780aa00db5a67b62ea03a38',·1,·'gmx::QuadraticSplineTable::evaluateDerivative(T·r,·T·*derivativeValue)·const'],745 ····['evaluatederivative_445',·['evaluatederivative',·['../classgmx_1_1CubicSplineTable.xhtml#af581c2c1b906e3c0f6575712d6baef44',·1,·'gmx::CubicSplineTable::evaluateDerivative(T·r,·T·*derivativeValue)·const'],
746 ········['../classgmx_1_1QuadraticSplineTable.xhtml#afb93e2ab60eb02c1b9ea5b93eb6c43b8',·1,·'gmx::QuadraticSplineTable::evaluateDerivative(T·r,·T·*derivativeValue1,·T·*derivativeValue2,·T·*derivativeValue3)·const'], 
747 ········['../classgmx_1_1QuadraticSplineTable.xhtml#a293c4b989907dd4bd628b72a46735e81',·1,·'gmx::QuadraticSplineTable::evaluateDerivative(T·r,·T·*derivativeValue1,·T·*derivativeValue2)·const'], 
748 ········['../classgmx_1_1CubicSplineTable.xhtml#a6fe320240e2c63165d04f1118235840e',·1,·'gmx::CubicSplineTable::evaluateDerivative(T·r,·T·*derivativeValue0,·T·*derivativeValue1,·T·*derivativeValue2)·const'], 
749 ········['../classgmx_1_1CubicSplineTable.xhtml#a0422a9e17f991f1c4508e1dbae62d400',·1,·'gmx::CubicSplineTable::evaluateDerivative(T·r,·T·*derivativeValue0,·T·*derivativeValue1)·const'],746 ········['../classgmx_1_1CubicSplineTable.xhtml#a0422a9e17f991f1c4508e1dbae62d400',·1,·'gmx::CubicSplineTable::evaluateDerivative(T·r,·T·*derivativeValue0,·T·*derivativeValue1)·const'],
 747 ········['../classgmx_1_1CubicSplineTable.xhtml#a6fe320240e2c63165d04f1118235840e',·1,·'gmx::CubicSplineTable::evaluateDerivative(T·r,·T·*derivativeValue0,·T·*derivativeValue1,·T·*derivativeValue2)·const'],
750 ········['../classgmx_1_1CubicSplineTable.xhtml#af581c2c1b906e3c0f6575712d6baef44',·1,·'gmx::CubicSplineTable::evaluateDerivative(T·r,·T·*derivativeValue)·const']748 ········['../classgmx_1_1QuadraticSplineTable.xhtml#aa9e7cfaa0780aa00db5a67b62ea03a38',·1,·'gmx::QuadraticSplineTable::evaluateDerivative(T·r,·T·*derivativeValue)·const'],
 749 ········['../classgmx_1_1QuadraticSplineTable.xhtml#a293c4b989907dd4bd628b72a46735e81',·1,·'gmx::QuadraticSplineTable::evaluateDerivative(T·r,·T·*derivativeValue1,·T·*derivativeValue2)·const'],
 750 ········['../classgmx_1_1QuadraticSplineTable.xhtml#afb93e2ab60eb02c1b9ea5b93eb6c43b8',·1,·'gmx::QuadraticSplineTable::evaluateDerivative(T·r,·T·*derivativeValue1,·T·*derivativeValue2,·T·*derivativeValue3)·const']
751 ····]],751 ····]],
752 ····['evaluateexpansionpoint_446',·['evaluateExpansionPoint',·['../classgmx_1_1NelderMeadSimplex.xhtml#a5d83a966145a4b49ccabcbc47b9c4df1',·1,·'gmx::NelderMeadSimplex']]],752 ····['evaluateexpansionpoint_446',·['evaluateExpansionPoint',·['../classgmx_1_1NelderMeadSimplex.xhtml#a5d83a966145a4b49ccabcbc47b9c4df1',·1,·'gmx::NelderMeadSimplex']]],
753 ····['evaluatefinal_447',·['evaluatefinal',·['../classgmx_1_1SelectionEvaluator.xhtml#a6d5202a595b0183631ba627d726f85c1',·1,·'gmx::SelectionEvaluator::evaluateFinal()'],753 ····['evaluatefinal_447',·['evaluatefinal',·['../classgmx_1_1SelectionEvaluator.xhtml#a6d5202a595b0183631ba627d726f85c1',·1,·'gmx::SelectionEvaluator::evaluateFinal()'],
754 ········['../classgmx_1_1SelectionCollection.xhtml#aeb8069b1be3abd49bad0a1431f91ad7c',·1,·'gmx::SelectionCollection::evaluateFinal()']754 ········['../classgmx_1_1SelectionCollection.xhtml#aeb8069b1be3abd49bad0a1431f91ad7c',·1,·'gmx::SelectionCollection::evaluateFinal()']
755 ····]],755 ····]],
756 ····['evaluateforce_448',·['evaluateforce',·['../classgmx_1_1DensityFittingForce_1_1Impl.xhtml#a94d7bc3daea70ddad195019ed87e5956',·1,·'gmx::DensityFittingForce::Impl::evaluateForce()'],756 ····['evaluateforce_448',·['evaluateforce',·['../classgmx_1_1DensityFittingForce_1_1Impl.xhtml#a94d7bc3daea70ddad195019ed87e5956',·1,·'gmx::DensityFittingForce::Impl::evaluateForce()'],
757 ········['../classgmx_1_1DensityFittingForce.xhtml#a48de58358220847863465808b507fd2e',·1,·'gmx::DensityFittingForce::evaluateForce()']757 ········['../classgmx_1_1DensityFittingForce.xhtml#a48de58358220847863465808b507fd2e',·1,·'gmx::DensityFittingForce::evaluateForce()']
758 ····]],758 ····]],
759 ····['evaluateforces_449',·['evaluateForces',·['../classgmx_1_1SelectionOption.xhtml#ab1969e91ec57a1282b5e796800389933',·1,·'gmx::SelectionOption']]],759 ····['evaluateforces_449',·['evaluateForces',·['../classgmx_1_1SelectionOption.xhtml#ab1969e91ec57a1282b5e796800389933',·1,·'gmx::SelectionOption']]],
 760 ····['evaluatefunction_450',·['evaluatefunction',·['../classgmx_1_1QuadraticSplineTable.xhtml#a55a6e8f12773a991d4fbe47ef10a8b7a',·1,·'gmx::QuadraticSplineTable::evaluateFunction(T·r,·T·*functionValue1,·T·*functionValue2,·T·*functionValue3)·const'],
 761 ········['../classgmx_1_1QuadraticSplineTable.xhtml#abef6fe237259c1d7e518f29a03c191eb',·1,·'gmx::QuadraticSplineTable::evaluateFunction(T·r,·T·*functionValue1,·T·*functionValue2)·const'],
760 ····['evaluatefunction_450',·['evaluatefunction',·['../classgmx_1_1CubicSplineTable.xhtml#a624d2f3c7e52adcf7408d4da520b7859',·1,·'gmx::CubicSplineTable::evaluateFunction(T·r,·T·*functionValue)·const'],762 ········['../classgmx_1_1CubicSplineTable.xhtml#a624d2f3c7e52adcf7408d4da520b7859',·1,·'gmx::CubicSplineTable::evaluateFunction(T·r,·T·*functionValue)·const'],
761 ········['../classgmx_1_1CubicSplineTable.xhtml#a44e659de3e6604fa3ee01cb1422a504f',·1,·'gmx::CubicSplineTable::evaluateFunction(T·r,·T·*functionValue0,·T·*functionValue1)·const'],763 ········['../classgmx_1_1CubicSplineTable.xhtml#a44e659de3e6604fa3ee01cb1422a504f',·1,·'gmx::CubicSplineTable::evaluateFunction(T·r,·T·*functionValue0,·T·*functionValue1)·const'],
762 ········['../classgmx_1_1CubicSplineTable.xhtml#a2b6951128e8311ceb8afff6ce7fead36',·1,·'gmx::CubicSplineTable::evaluateFunction(T·r,·T·*functionValue0,·T·*functionValue1,·T·*functionValue2)·const'],764 ········['../classgmx_1_1CubicSplineTable.xhtml#a2b6951128e8311ceb8afff6ce7fead36',·1,·'gmx::CubicSplineTable::evaluateFunction(T·r,·T·*functionValue0,·T·*functionValue1,·T·*functionValue2)·const'],
763 ········['../classgmx_1_1QuadraticSplineTable.xhtml#af9aca690a0ee92af501c865d7a8e5044',·1,·'gmx::QuadraticSplineTable::evaluateFunction(T·r,·T·*functionValue)·const'],765 ········['../classgmx_1_1QuadraticSplineTable.xhtml#af9aca690a0ee92af501c865d7a8e5044',·1,·'gmx::QuadraticSplineTable::evaluateFunction()']
764 ········['../classgmx_1_1QuadraticSplineTable.xhtml#abef6fe237259c1d7e518f29a03c191eb',·1,·'gmx::QuadraticSplineTable::evaluateFunction(T·r,·T·*functionValue1,·T·*functionValue2)·const'], 
765 ········['../classgmx_1_1QuadraticSplineTable.xhtml#a55a6e8f12773a991d4fbe47ef10a8b7a',·1,·'gmx::QuadraticSplineTable::evaluateFunction(T·r,·T·*functionValue1,·T·*functionValue2,·T·*functionValue3)·const'] 
766 ····]],766 ····]],
767 ····['evaluatefunctionandderivative_451',·['evaluatefunctionandderivative',·['../classgmx_1_1CubicSplineTable.xhtml#ac93d0b5e34f7942ca98b2d44d40b3ea1',·1,·'gmx::CubicSplineTable::evaluateFunctionAndDerivative()'],767 ····['evaluatefunctionandderivative_451',·['evaluatefunctionandderivative',·['../classgmx_1_1CubicSplineTable.xhtml#a7313f61a65dfedf8359dbb362c111a5f',·1,·'gmx::CubicSplineTable::evaluateFunctionAndDerivative()'],
768 ········['../classgmx_1_1QuadraticSplineTable.xhtml#a155411b2d94d1728b95d4dba7755e3d7',·1,·'gmx::QuadraticSplineTable::evaluateFunctionAndDerivative(T·r,·T·*functionValue1,·T·*derivativeValue1,·T·*functionValue2,·T·*derivativeValue2,·T·*functionValue3,·T·*derivativeValue3)·const'],768 ········['../classgmx_1_1QuadraticSplineTable.xhtml#a1829af258b70b6ed03822f07aff0190f',·1,·'gmx::QuadraticSplineTable::evaluateFunctionAndDerivative(T·r,·T·*functionValue,·T·*derivativeValue)·const'],
769 ········['../classgmx_1_1QuadraticSplineTable.xhtml#a6b70a811af8bd4f953ec5f668412bbaf',·1,·'gmx::QuadraticSplineTable::evaluateFunctionAndDerivative(T·r,·T·*functionValue1,·T·*derivativeValue1,·T·*functionValue2,·T·*derivativeValue2)·const'],769 ········['../classgmx_1_1QuadraticSplineTable.xhtml#a6b70a811af8bd4f953ec5f668412bbaf',·1,·'gmx::QuadraticSplineTable::evaluateFunctionAndDerivative(T·r,·T·*functionValue1,·T·*derivativeValue1,·T·*functionValue2,·T·*derivativeValue2)·const'],
 770 ········['../classgmx_1_1QuadraticSplineTable.xhtml#a155411b2d94d1728b95d4dba7755e3d7',·1,·'gmx::QuadraticSplineTable::evaluateFunctionAndDerivative(T·r,·T·*functionValue1,·T·*derivativeValue1,·T·*functionValue2,·T·*derivativeValue2,·T·*functionValue3,·T·*derivativeValue3)·const'],
770 ········['../classgmx_1_1CubicSplineTable.xhtml#a863c0191a73cfea35178858ff3584bcf',·1,·'gmx::CubicSplineTable::evaluateFunctionAndDerivative()'],771 ········['../classgmx_1_1CubicSplineTable.xhtml#a863c0191a73cfea35178858ff3584bcf',·1,·'gmx::CubicSplineTable::evaluateFunctionAndDerivative(T·r,·T·*functionValue0,·T·*derivativeValue0,·T·*functionValue1,·T·*derivativeValue1)·const'],
 772 ········['../classgmx_1_1CubicSplineTable.xhtml#ac93d0b5e34f7942ca98b2d44d40b3ea1',·1,·'gmx::CubicSplineTable::evaluateFunctionAndDerivative(T·r,·T·*functionValue,·T·*derivativeValue)·const']
771 ········['../classgmx_1_1QuadraticSplineTable.xhtml#a1829af258b70b6ed03822f07aff0190f',·1,·'gmx::QuadraticSplineTable::evaluateFunctionAndDerivative()'], 
772 ········['../classgmx_1_1CubicSplineTable.xhtml#a7313f61a65dfedf8359dbb362c111a5f',·1,·'gmx::CubicSplineTable::evaluateFunctionAndDerivative()'] 
773 ····]],773 ····]],
774 ····['evaluatehelpervalues_452',·['evaluateHelperValues',·['../namespacegmx_1_1anonymous__namespace_02densityfit_8cpp_03.xhtml#a6d5392693f1b404bb92e47d63f77d090',·1,·'gmx::anonymous_namespace{densityfit.cpp}']]],774 ····['evaluatehelpervalues_452',·['evaluateHelperValues',·['../namespacegmx_1_1anonymous__namespace_02densityfit_8cpp_03.xhtml#a6d5392693f1b404bb92e47d63f77d090',·1,·'gmx::anonymous_namespace{densityfit.cpp}']]],
775 ····['evaluatemodel_453',·['evaluatemodel',·['../classgmx_1_1TorchModel.xhtml#a5044f053732fd2c28df26c1626f07bff',·1,·'gmx::TorchModel::evaluateModel()'],775 ····['evaluatemodel_453',·['evaluatemodel',·['../classgmx_1_1TorchModel.xhtml#a5044f053732fd2c28df26c1626f07bff',·1,·'gmx::TorchModel::evaluateModel()'],
776 ········['../classgmx_1_1INNPotModel.xhtml#ac41875649affd1941e519b7a671d3703',·1,·'gmx::INNPotModel::evaluateModel()']776 ········['../classgmx_1_1INNPotModel.xhtml#ac41875649affd1941e519b7a671d3703',·1,·'gmx::INNPotModel::evaluateModel()']
777 ····]],777 ····]],
778 ····['evaluatereflectionpoint_454',·['evaluateReflectionPoint',·['../classgmx_1_1NelderMeadSimplex.xhtml#a55452c154211b3eb0dc5c101e35033aa',·1,·'gmx::NelderMeadSimplex']]],778 ····['evaluatereflectionpoint_454',·['evaluateReflectionPoint',·['../classgmx_1_1NelderMeadSimplex.xhtml#a55452c154211b3eb0dc5c101e35033aa',·1,·'gmx::NelderMeadSimplex']]],
779 ····['evaluateshifttobox_455',·['evaluateShiftToBox',·['../namespacegmx_1_1anonymous__namespace_02com_8cpp_03.xhtml#a68f25f4d5b5426c3ebaf29d7c16dc72f',·1,·'gmx::anonymous_namespace{com.cpp}']]],779 ····['evaluateshifttobox_455',·['evaluateShiftToBox',·['../namespacegmx_1_1anonymous__namespace_02com_8cpp_03.xhtml#a68f25f4d5b5426c3ebaf29d7c16dc72f',·1,·'gmx::anonymous_namespace{com.cpp}']]],
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264 ····['helpmanagertest_190',·['HelpManagerTest',·['../namespacegmx_1_1test_1_1anonymous__namespace_02helpmanager_8cpp_03.xhtml#af3f158bf9b2db55ac1e2a2a60f6ee995',·1,·'gmx::test::anonymous_namespace{helpmanager.cpp}']]],264 ····['helpmanagertest_190',·['HelpManagerTest',·['../namespacegmx_1_1test_1_1anonymous__namespace_02helpmanager_8cpp_03.xhtml#af3f158bf9b2db55ac1e2a2a60f6ee995',·1,·'gmx::test::anonymous_namespace{helpmanager.cpp}']]],
265 ····['helpmodule_5f_191',·['helpModule_',·['../classgmx_1_1CommandLineModuleManager_1_1Impl.xhtml#a8b5a1258815add1b14dca4d8ff8998c4',·1,·'gmx::CommandLineModuleManager::Impl']]],265 ····['helpmodule_5f_191',·['helpModule_',·['../classgmx_1_1CommandLineModuleManager_1_1Impl.xhtml#a8b5a1258815add1b14dca4d8ff8998c4',·1,·'gmx::CommandLineModuleManager::Impl']]],
266 ····['helpoutputformat_192',·['HelpOutputFormat',·['../namespacegmx.xhtml#adc6936f6090da8e4cf7801c8e71ee37f',·1,·'gmx']]],266 ····['helpoutputformat_192',·['HelpOutputFormat',·['../namespacegmx.xhtml#adc6936f6090da8e4cf7801c8e71ee37f',·1,·'gmx']]],
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267 ····['helptext_193',·['helptext',·['../classgmx_1_1AbstractSimpleHelpTopic.xhtml#ac8df9bdad0655b933a63d4fcb84c3c90',·1,·'gmx::AbstractSimpleHelpTopic::helpText()'], 
268 ········['../classgmx_1_1AbstractCompositeHelpTopic.xhtml#ab94bb5f1964de89ddb4da358aae48116',·1,·'gmx::AbstractCompositeHelpTopic::helpText()'], 
269 ········['../classgmx_1_1anonymous__namespace_02selhelp_8cpp_03_1_1KeywordDetailsHelpTopic.xhtml#aa3cfab4bcc96ceda1c81456f1f6cbc3f',·1,·'gmx::anonymous_namespace{selhelp.cpp}::KeywordDetailsHelpTopic::helpText()'],268 ········['../classgmx_1_1anonymous__namespace_02selhelp_8cpp_03_1_1KeywordDetailsHelpTopic.xhtml#aa3cfab4bcc96ceda1c81456f1f6cbc3f',·1,·'gmx::anonymous_namespace{selhelp.cpp}::KeywordDetailsHelpTopic::helpText()'],
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270 ········['../classgmx_1_1CompositeHelpTopic.xhtml#a7452b0c48cc5fed19150f672bebf1646',·1,·'gmx::CompositeHelpTopic::helpText()'],270 ········['../classgmx_1_1AbstractCompositeHelpTopic.xhtml#ab94bb5f1964de89ddb4da358aae48116',·1,·'gmx::AbstractCompositeHelpTopic::helpText()'],
271 ········['../classgmx_1_1SimpleHelpTopic.xhtml#a044e07745db4f94d13c1c99a7cfa7e31',·1,·'gmx::SimpleHelpTopic::helpText()']271 ········['../classgmx_1_1SimpleHelpTopic.xhtml#a044e07745db4f94d13c1c99a7cfa7e31',·1,·'gmx::SimpleHelpTopic::helpText()']
272 ····]],272 ····]],
273 ····['helptext_5f_194',·['helpText_',·['../classgmx_1_1CommandLineHelpWriter_1_1Impl.xhtml#a111543ff6be5909585275501b8c1a041',·1,·'gmx::CommandLineHelpWriter::Impl']]],273 ····['helptext_5f_194',·['helpText_',·['../classgmx_1_1CommandLineHelpWriter_1_1Impl.xhtml#a111543ff6be5909585275501b8c1a041',·1,·'gmx::CommandLineHelpWriter::Impl']]],
274 ····['helptitle_195',·['helpTitle',·['../structgmx__ana__selmethod__help__t.xhtml#a881ec7c346661f63a0f24ad1f543b671',·1,·'gmx_ana_selmethod_help_t']]],274 ····['helptitle_195',·['helpTitle',·['../structgmx__ana__selmethod__help__t.xhtml#a881ec7c346661f63a0f24ad1f543b671',·1,·'gmx_ana_selmethod_help_t']]],
275 ····['helptitle_5fatomname_196',·['helptitle_atomname',·['../sm__simple_8cpp.xhtml#a72cbdfb8b248a4378d1a3ff247dfcf2a',·1,·'sm_simple.cpp']]],275 ····['helptitle_5fatomname_196',·['helptitle_atomname',·['../sm__simple_8cpp.xhtml#a72cbdfb8b248a4378d1a3ff247dfcf2a',·1,·'sm_simple.cpp']]],
276 ····['helptitle_5fdistance_197',·['helptitle_distance',·['../sm__distance_8cpp.xhtml#ae4dcf55ca7cd7f92b81e9a57f8efb0c1',·1,·'sm_distance.cpp']]],276 ····['helptitle_5fdistance_197',·['helptitle_distance',·['../sm__distance_8cpp.xhtml#ae4dcf55ca7cd7f92b81e9a57f8efb0c1',·1,·'sm_distance.cpp']]],
277 ····['helptitle_5fmerge_198',·['helptitle_merge',·['../sm__merge_8cpp.xhtml#afffcc8309d2f125d594d806812208277',·1,·'sm_merge.cpp']]],277 ····['helptitle_5fmerge_198',·['helptitle_merge',·['../sm__merge_8cpp.xhtml#afffcc8309d2f125d594d806812208277',·1,·'sm_merge.cpp']]],
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321 ····['histogramsize_2ecpp_225',·['histogramsize.cpp',·['../histogramsize_8cpp.xhtml',·1,·'']]],321 ····['histogramsize_2ecpp_225',·['histogramsize.cpp',·['../histogramsize_8cpp.xhtml',·1,·'']]],
322 ····['histogramsize_2eh_226',·['histogramsize.h',·['../histogramsize_8h.xhtml',·1,·'']]],322 ····['histogramsize_2eh_226',·['histogramsize.h',·['../histogramsize_8h.xhtml',·1,·'']]],
323 ····['history_5ft_227',·['history_t',·['../classhistory__t.xhtml',·1,·'']]],323 ····['history_5ft_227',·['history_t',·['../classhistory__t.xhtml',·1,·'']]],
324 ····['hostallocationpolicy_228',·['hostallocationpolicy',·['../classgmx_1_1HostAllocationPolicy.xhtml#ae21acc5cb9c70ea92fce07cb0d6e2947',·1,·'gmx::HostAllocationPolicy::HostAllocationPolicy()'],324 ····['hostallocationpolicy_228',·['hostallocationpolicy',·['../classgmx_1_1HostAllocationPolicy.xhtml#ae21acc5cb9c70ea92fce07cb0d6e2947',·1,·'gmx::HostAllocationPolicy::HostAllocationPolicy()'],
325 ········['../classgmx_1_1HostAllocationPolicy.xhtml',·1,·'gmx::HostAllocationPolicy']325 ········['../classgmx_1_1HostAllocationPolicy.xhtml',·1,·'gmx::HostAllocationPolicy']
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327 ····['hostallocator_229',·['HostAllocator',·['../namespacegmx.xhtml#aae347fd6abaab2e4d8278bf17973b664',·1,·'gmx']]],327 ····['hostallocator_229',·['HostAllocator',·['../namespacegmx.xhtml#aae347fd6abaab2e4d8278bf17973b664',·1,·'gmx']]],
328 ····['hostallocator_2ecpp_230',·['hostallocator.cpp',·['../tests_2hostallocator_8cpp.xhtml',·1,·'(Global·Namespace)'],328 ····['hostallocator_2ecpp_230',·['hostallocator.cpp',·['../hostallocator_8cpp.xhtml',·1,·'(Global·Namespace)'],
329 ········['../hostallocator_8cpp.xhtml',·1,·'(Global·Namespace)']329 ········['../tests_2hostallocator_8cpp.xhtml',·1,·'(Global·Namespace)']
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332 ····['hostallocatortest_232',·['HostAllocatorTest',·['../structgmx_1_1test_1_1HostAllocatorTest.xhtml',·1,·'gmx::test']]],332 ····['hostallocatortest_232',·['HostAllocatorTest',·['../structgmx_1_1test_1_1HostAllocatorTest.xhtml',·1,·'gmx::test']]],
333 ····['hostallocatortestcopyable_233',·['HostAllocatorTestCopyable',·['../namespacegmx_1_1test.xhtml#af4467ed419f6f86b5167681787e399a2',·1,·'gmx::test']]],333 ····['hostallocatortestcopyable_233',·['HostAllocatorTestCopyable',·['../namespacegmx_1_1test.xhtml#af4467ed419f6f86b5167681787e399a2',·1,·'gmx::test']]],
334 ····['hostallocatortestnomem_234',·['HostAllocatorTestNoMem',·['../structgmx_1_1test_1_1HostAllocatorTestNoMem.xhtml',·1,·'gmx::test']]],334 ····['hostallocatortestnomem_234',·['HostAllocatorTestNoMem',·['../structgmx_1_1test_1_1HostAllocatorTestNoMem.xhtml',·1,·'gmx::test']]],
335 ····['hostallocatortestnomemcopyable_235',·['HostAllocatorTestNoMemCopyable',·['../structgmx_1_1test_1_1HostAllocatorTestNoMemCopyable.xhtml',·1,·'gmx::test']]],335 ····['hostallocatortestnomemcopyable_235',·['HostAllocatorTestNoMemCopyable',·['../structgmx_1_1test_1_1HostAllocatorTestNoMemCopyable.xhtml',·1,·'gmx::test']]],
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17 ····['ibm_5fvmx_7',·['Ibm_Vmx',·['../classgmx_1_1CpuInfo.xhtml#ac8981fb299411577dccba90b335a9085a3f9726bfb19d56f774360782846dc77f',·1,·'gmx::CpuInfo']]],17 ····['ibm_5fvmx_7',·['Ibm_Vmx',·['../classgmx_1_1CpuInfo.xhtml#ac8981fb299411577dccba90b335a9085a3f9726bfb19d56f774360782846dc77f',·1,·'gmx::CpuInfo']]],
18 ····['ibm_5fvsx_8',·['ibm_vsx',·['../classgmx_1_1CpuInfo.xhtml#ac8981fb299411577dccba90b335a9085ae2817429950760b6f888ba6a8446fbf5',·1,·'gmx::CpuInfo::Ibm_Vsx'],18 ····['ibm_5fvsx_8',·['ibm_vsx',·['../classgmx_1_1CpuInfo.xhtml#ac8981fb299411577dccba90b335a9085ae2817429950760b6f888ba6a8446fbf5',·1,·'gmx::CpuInfo::Ibm_Vsx'],
19 ········['../namespacegmx.xhtml#aa9e7df55e017bd726d027d65551bbd0cae2817429950760b6f888ba6a8446fbf5',·1,·'gmx::Ibm_Vsx']19 ········['../namespacegmx.xhtml#aa9e7df55e017bd726d027d65551bbd0cae2817429950760b6f888ba6a8446fbf5',·1,·'gmx::Ibm_Vsx']
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27 ····['iclustersizeperlisttype_13',·['IClusterSizePerListType',·['../namespacegmx.xhtml#a99b3d22e099bc359f1328352a68e7539',·1,·'gmx']]],27 ····['iclustersizeperlisttype_13',·['IClusterSizePerListType',·['../namespacegmx.xhtml#a99b3d22e099bc359f1328352a68e7539',·1,·'gmx']]],
28 ····['icommandlinemodule_14',·['ICommandLineModule',·['../classgmx_1_1ICommandLineModule.xhtml',·1,·'gmx']]],28 ····['icommandlinemodule_14',·['ICommandLineModule',·['../classgmx_1_1ICommandLineModule.xhtml',·1,·'gmx']]],
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30 ····['icommandlineoptionsmodulepointer_16',·['ICommandLineOptionsModulePointer',·['../namespacegmx.xhtml#a682ce4a779fde44ee633b8648eeafe87',·1,·'gmx']]],30 ····['icommandlineoptionsmodulepointer_16',·['ICommandLineOptionsModulePointer',·['../namespacegmx.xhtml#a682ce4a779fde44ee633b8648eeafe87',·1,·'gmx']]],
31 ····['icommandlineoptionsmodulesettings_17',·['ICommandLineOptionsModuleSettings',·['../classgmx_1_1ICommandLineOptionsModuleSettings.xhtml',·1,·'gmx']]],31 ····['icommandlineoptionsmodulesettings_17',·['ICommandLineOptionsModuleSettings',·['../classgmx_1_1ICommandLineOptionsModuleSettings.xhtml',·1,·'gmx']]],
32 ····['id_18',·['id',·['../structgmx_1_1HardwareTopology_1_1ProcessingUnit.xhtml#aec42b65b2d21b58f6bd27ff19205a538',·1,·'gmx::HardwareTopology::ProcessingUnit::id'],32 ····['id_18',·['id',·['../structgmx_1_1HardwareTopology_1_1ProcessingUnit.xhtml#aec42b65b2d21b58f6bd27ff19205a538',·1,·'gmx::HardwareTopology::ProcessingUnit::id'],
33 ········['../structgmx_1_1HardwareTopology_1_1Core.xhtml#a8e9bad14d30ae3f81b8cc13b750c2176',·1,·'gmx::HardwareTopology::Core::id'],33 ········['../structgmx_1_1HardwareTopology_1_1Core.xhtml#a8e9bad14d30ae3f81b8cc13b750c2176',·1,·'gmx::HardwareTopology::Core::id'],
34 ········['../structgmx_1_1HardwareTopology_1_1Package.xhtml#a8a3df986a213d53070f5750b8e1738a1',·1,·'gmx::HardwareTopology::Package::id'],34 ········['../structgmx_1_1HardwareTopology_1_1Package.xhtml#a8a3df986a213d53070f5750b8e1738a1',·1,·'gmx::HardwareTopology::Package::id'],
35 ········['../classgmx_1_1test_1_1TestDevice.xhtml#a842bd593d3c47d3522470a3be45a862d',·1,·'gmx::test::TestDevice::id()'], 
36 ········['../structgmx_1_1HardwareTopology_1_1NumaNode.xhtml#a1042d00c9db62e9d8f22a63403372acb',·1,·'gmx::HardwareTopology::NumaNode::id'],35 ········['../structgmx_1_1HardwareTopology_1_1NumaNode.xhtml#a1042d00c9db62e9d8f22a63403372acb',·1,·'gmx::HardwareTopology::NumaNode::id'],
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38 ········['../structDeviceInformation.xhtml#aef9ad6fdaf54d7176c07482afc323dbf',·1,·'DeviceInformation::id']38 ········['../structDeviceInformation.xhtml#aef9ad6fdaf54d7176c07482afc323dbf',·1,·'DeviceInformation::id']
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41 ····['idef_20',·['idef',·['../structthread__work__t.xhtml#a5d30701a3c72c500069bc8e9e110c076',·1,·'thread_work_t::idef'], 
42 ········['../structgmx__localtop__t.xhtml#af5ed39749ac3708c36eed4209736cce2',·1,·'gmx_localtop_t::idef']41 ····['idef_20',·['idef',·['../structgmx__localtop__t.xhtml#af5ed39749ac3708c36eed4209736cce2',·1,·'gmx_localtop_t::idef'],
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46 ····['identifyavx512fmaunits_23',·['identifyAvx512FmaUnits',·['../namespacegmx.xhtml#a6edee513f8fdeaffb9094124f58ba270',·1,·'gmx']]],46 ····['identifyavx512fmaunits_23',·['identifyAvx512FmaUnits',·['../namespacegmx.xhtml#a6edee513f8fdeaffb9094124f58ba270',·1,·'gmx']]],
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324 ····['loadu1dualhsimd_230',·['loadu1dualhsimd',·['../group__module__simd.xhtml#ga037b15ee8ff585453423ae4c8e061d7c',·1,·'gmx::loadU1DualHsimd(const·double·*m)'],324 ····['loadu1dualhsimd_230',·['loadu1dualhsimd',·['../group__module__simd.xhtml#ga037b15ee8ff585453423ae4c8e061d7c',·1,·'gmx::loadU1DualHsimd(const·double·*m)'],
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331 ········['../group__module__simd.xhtml#ga48240220eea9e0812731ec802ffec596',·1,·'gmx::loadUNDuplicate4(const·double·*m)']330 ····['loadunduplicate4_232',·['loadunduplicate4',·['../group__module__simd.xhtml#ga48240220eea9e0812731ec802ffec596',·1,·'gmx::loadUNDuplicate4(const·double·*m)'],
 331 ········['../group__module__simd.xhtml#ga2c940b444e69a8b8ace1f4edb676712b',·1,·'gmx::loadUNDuplicate4(const·float·*m)']
332 ····]],332 ····]],
333 ····['local_233',·['local',·['../structAtomIndexSet.xhtml#afff60fdcd71337e0d1741f135dd914d9',·1,·'AtomIndexSet::local'], 
334 ········['../namespacegmx.xhtml#a8593d10460a38e0d418692d63f962521a509820290d57f333403f490dde7316f4',·1,·'gmx::Local'],333 ····['local_233',·['local',·['../namespacegmx.xhtml#a8593d10460a38e0d418692d63f962521a509820290d57f333403f490dde7316f4',·1,·'gmx::Local'],
335 ········['../namespacegmx.xhtml#a84de1dccdfb142b80c42b0b19f8c6548a509820290d57f333403f490dde7316f4',·1,·'gmx::Local']334 ········['../namespacegmx.xhtml#a84de1dccdfb142b80c42b0b19f8c6548a509820290d57f333403f490dde7316f4',·1,·'gmx::Local'],
 335 ········['../structAtomIndexSet.xhtml#afff60fdcd71337e0d1741f135dd914d9',·1,·'AtomIndexSet::local']
336 ····]],336 ····]],
337 ····['localatomordermatchesnbnxmorder_234',·['localatomordermatchesnbnxmorder',·['../classgmx_1_1GridSet.xhtml#a9836c0e4b9182d580e946598f18f3c7f',·1,·'gmx::GridSet::localAtomOrderMatchesNbnxmOrder()'],337 ····['localatomordermatchesnbnxmorder_234',·['localatomordermatchesnbnxmorder',·['../classgmx_1_1GridSet.xhtml#a9836c0e4b9182d580e946598f18f3c7f',·1,·'gmx::GridSet::localAtomOrderMatchesNbnxmOrder()'],
338 ········['../structgmx_1_1nonbonded__verlet__t.xhtml#a83d8dac6f717c789f5810ef21cb0c176',·1,·'gmx::nonbonded_verlet_t::localAtomOrderMatchesNbnxmOrder()']338 ········['../structgmx_1_1nonbonded__verlet__t.xhtml#a83d8dac6f717c789f5810ef21cb0c176',·1,·'gmx::nonbonded_verlet_t::localAtomOrderMatchesNbnxmOrder()']
339 ····]],339 ····]],
340 ····['localatomset_235',·['localatomset',·['../classgmx_1_1LocalAtomSet.xhtml',·1,·'gmx::LocalAtomSet'],340 ····['localatomset_235',·['localatomset',·['../classgmx_1_1LocalAtomSet.xhtml',·1,·'gmx::LocalAtomSet'],
341 ········['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFittingSimulationParameterSetup.xhtml#a188c5386f2eb694db6cedf88359fa41d',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup::localAtomSet()']341 ········['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFittingSimulationParameterSetup.xhtml#a188c5386f2eb694db6cedf88359fa41d',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup::localAtomSet()']
342 ····]],342 ····]],
343 ····['localatomset_2ecpp_236',·['localatomset.cpp',·['../localatomset_8cpp.xhtml',·1,·'']]],343 ····['localatomset_2ecpp_236',·['localatomset.cpp',·['../localatomset_8cpp.xhtml',·1,·'']]],
344 ····['localatomset_2eh_237',·['localatomset.h',·['../localatomset_8h.xhtml',·1,·'']]],344 ····['localatomset_2eh_237',·['localatomset.h',·['../localatomset_8h.xhtml',·1,·'']]],
345 ····['localatomsetdata_2ecpp_238',·['localatomsetdata.cpp',·['../localatomsetdata_8cpp.xhtml',·1,·'']]],345 ····['localatomsetdata_2ecpp_238',·['localatomsetdata.cpp',·['../localatomsetdata_8cpp.xhtml',·1,·'']]],
346 ····['localatomsetdata_2eh_239',·['localatomsetdata.h',·['../localatomsetdata_8h.xhtml',·1,·'']]],346 ····['localatomsetdata_2eh_239',·['localatomsetdata.h',·['../localatomsetdata_8h.xhtml',·1,·'']]],
347 ····['localatomsetmanager_240',·['localatomsetmanager',·['../classgmx_1_1LocalAtomSetManager.xhtml',·1,·'gmx::LocalAtomSetManager'],347 ····['localatomsetmanager_240',·['localatomsetmanager',·['../classgmx_1_1LocalAtomSetManager.xhtml',·1,·'gmx::LocalAtomSetManager'],
348 ········['../classgmx_1_1ColvarsSimulationsParameters.xhtml#a34afd04735705f6200b8ae831dd1d458',·1,·'gmx::ColvarsSimulationsParameters::localAtomSetManager()']348 ········['../classgmx_1_1ColvarsSimulationsParameters.xhtml#a34afd04735705f6200b8ae831dd1d458',·1,·'gmx::ColvarsSimulationsParameters::localAtomSetManager()']
349 ····]],349 ····]],
350 ····['localatomsetmanager_2ecpp_241',·['localatomsetmanager.cpp',·['../localatomsetmanager_8cpp.xhtml',·1,·'(Global·Namespace)'],350 ····['localatomsetmanager_2ecpp_241',·['localatomsetmanager.cpp',·['../tests_2localatomsetmanager_8cpp.xhtml',·1,·'(Global·Namespace)'],
351 ········['../tests_2localatomsetmanager_8cpp.xhtml',·1,·'(Global·Namespace)']351 ········['../localatomsetmanager_8cpp.xhtml',·1,·'(Global·Namespace)']
352 ····]],352 ····]],
353 ····['localatomsetmanager_2eh_242',·['localatomsetmanager.h',·['../localatomsetmanager_8h.xhtml',·1,·'']]],353 ····['localatomsetmanager_2eh_242',·['localatomsetmanager.h',·['../localatomsetmanager_8h.xhtml',·1,·'']]],
354 ····['localcomplexgridsize_243',·['localComplexGridSize',·['../structPmeGpuGridParams.xhtml#aa89412c89b24d489e7b1e2a7429372ee',·1,·'PmeGpuGridParams']]],354 ····['localcomplexgridsize_243',·['localComplexGridSize',·['../structPmeGpuGridParams.xhtml#aa89412c89b24d489e7b1e2a7429372ee',·1,·'PmeGpuGridParams']]],
355 ····['localcomplexgridsizepadded_244',·['localComplexGridSizePadded',·['../structPmeGpuGridParams.xhtml#a94db264056f3f813dd3c2400f2a01583',·1,·'PmeGpuGridParams']]],355 ····['localcomplexgridsizepadded_244',·['localComplexGridSizePadded',·['../structPmeGpuGridParams.xhtml#a94db264056f3f813dd3c2400f2a01583',·1,·'PmeGpuGridParams']]],
356 ····['localforceptr_245',·['localForcePtr',·['../structgmx_1_1PpForceCommManager.xhtml#a694fd2c44f7e429a3115a9269a64d5f7',·1,·'gmx::PpForceCommManager']]],356 ····['localforceptr_245',·['localForcePtr',·['../structgmx_1_1PpForceCommManager.xhtml#a694fd2c44f7e429a3115a9269a64d5f7',·1,·'gmx::PpForceCommManager']]],
357 ····['localindex_246',·['localIndex',·['../classgmx_1_1LocalAtomSet.xhtml#a1a9f534d6e92a54e0e818d058d81f68d',·1,·'gmx::LocalAtomSet']]],357 ····['localindex_246',·['localIndex',·['../classgmx_1_1LocalAtomSet.xhtml#a1a9f534d6e92a54e0e818d058d81f68d',·1,·'gmx::LocalAtomSet']]],
358 ····['locality_2eh_247',·['locality.h',·['../locality_8h.xhtml',·1,·'']]],358 ····['locality_2eh_247',·['locality.h',·['../locality_8h.xhtml',·1,·'']]],
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5 ····['abstractoption_2eh_3',·['abstractoption.h',·['../abstractoption_8h.xhtml',·1,·'']]],5 ····['abstractoption_2eh_3',·['abstractoption.h',·['../abstractoption_8h.xhtml',·1,·'']]],
6 ····['abstractoptionstorage_2ecpp_4',·['abstractoptionstorage.cpp',·['../abstractoptionstorage_8cpp.xhtml',·1,·'']]],6 ····['abstractoptionstorage_2ecpp_4',·['abstractoptionstorage.cpp',·['../abstractoptionstorage_8cpp.xhtml',·1,·'']]],
7 ····['abstractoptionstorage_2eh_5',·['abstractoptionstorage.h',·['../abstractoptionstorage_8h.xhtml',·1,·'']]],7 ····['abstractoptionstorage_2eh_5',·['abstractoptionstorage.h',·['../abstractoptionstorage_8h.xhtml',·1,·'']]],
8 ····['abstractsection_2ecpp_6',·['abstractsection.cpp',·['../abstractsection_8cpp.xhtml',·1,·'']]],8 ····['abstractsection_2ecpp_6',·['abstractsection.cpp',·['../abstractsection_8cpp.xhtml',·1,·'']]],
9 ····['abstractsection_2eh_7',·['abstractsection.h',·['../abstractsection_8h.xhtml',·1,·'']]],9 ····['abstractsection_2eh_7',·['abstractsection.h',·['../abstractsection_8h.xhtml',·1,·'']]],
10 ····['accessor_5fpolicy_2ecpp_8',·['accessor_policy.cpp',·['../accessor__policy_8cpp.xhtml',·1,·'']]],10 ····['accessor_5fpolicy_2ecpp_8',·['accessor_policy.cpp',·['../accessor__policy_8cpp.xhtml',·1,·'']]],
11 ····['accessor_5fpolicy_2eh_9',·['accessor_policy.h',·['../accessor__policy_8h.xhtml',·1,·'']]],11 ····['accessor_5fpolicy_2eh_9',·['accessor_policy.h',·['../accessor__policy_8h.xhtml',·1,·'']]],
12 ····['alignedallocator_2ecpp_10',·['alignedallocator.cpp',·['../tests_2alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)'],12 ····['alignedallocator_2ecpp_10',·['alignedallocator.cpp',·['../alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)'],
13 ········['../alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)']13 ········['../tests_2alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)']
14 ····]],14 ····]],
15 ····['alignedallocator_2eh_11',·['alignedallocator.h',·['../alignedallocator_8h.xhtml',·1,·'']]],15 ····['alignedallocator_2eh_11',·['alignedallocator.h',·['../alignedallocator_8h.xhtml',·1,·'']]],
16 ····['alignedallocator_5fimpl_2eh_12',·['alignedallocator_impl.h',·['../alignedallocator__impl_8h.xhtml',·1,·'']]],16 ····['alignedallocator_5fimpl_2eh_12',·['alignedallocator_impl.h',·['../alignedallocator__impl_8h.xhtml',·1,·'']]],
17 ····['allocator_2eh_13',·['allocator.h',·['../allocator_8h.xhtml',·1,·'']]],17 ····['allocator_2eh_13',·['allocator.h',·['../allocator_8h.xhtml',·1,·'']]],
18 ····['analysisdata_2ecpp_14',·['analysisdata.cpp',·['../analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)'],18 ····['analysisdata_2ecpp_14',·['analysisdata.cpp',·['../tests_2analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)'],
19 ········['../tests_2analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)']19 ········['../analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)']
20 ····]],20 ····]],
21 ····['analysisdata_2eh_15',·['analysisdata.h',·['../analysisdata_8h.xhtml',·1,·'']]],21 ····['analysisdata_2eh_15',·['analysisdata.h',·['../analysisdata_8h.xhtml',·1,·'']]],
22 ····['analysismodule_2ecpp_16',·['analysismodule.cpp',·['../analysismodule_8cpp.xhtml',·1,·'']]],22 ····['analysismodule_2ecpp_16',·['analysismodule.cpp',·['../analysismodule_8cpp.xhtml',·1,·'']]],
23 ····['analysismodule_2eh_17',·['analysismodule.h',·['../api_2legacy_2include_2gromacs_2trajectoryanalysis_2analysismodule_8h.xhtml',·1,·'(Global·Namespace)'],23 ····['analysismodule_2eh_17',·['analysismodule.h',·['../api_2legacy_2include_2gromacs_2trajectoryanalysis_2analysismodule_8h.xhtml',·1,·'(Global·Namespace)'],
24 ········['../src_2gromacs_2energyanalysis_2analysismodule_8h.xhtml',·1,·'(Global·Namespace)']24 ········['../src_2gromacs_2energyanalysis_2analysismodule_8h.xhtml',·1,·'(Global·Namespace)']
25 ····]],25 ····]],
26 ····['analysissettings_2ecpp_18',·['analysissettings.cpp',·['../analysissettings_8cpp.xhtml',·1,·'']]],26 ····['analysissettings_2ecpp_18',·['analysissettings.cpp',·['../analysissettings_8cpp.xhtml',·1,·'']]],
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26 ····['biasstate_2eh_24',·['biasstate.h',·['../biasstate_8h.xhtml',·1,·'']]],26 ····['biasstate_2eh_24',·['biasstate.h',·['../biasstate_8h.xhtml',·1,·'']]],
27 ····['biaswriter_2eh_25',·['biaswriter.h',·['../biaswriter_8h.xhtml',·1,·'']]],27 ····['biaswriter_2eh_25',·['biaswriter.h',·['../biaswriter_8h.xhtml',·1,·'']]],
28 ····['binaryinformation_2ecpp_26',·['binaryinformation.cpp',·['../binaryinformation_8cpp.xhtml',·1,·'']]],28 ····['binaryinformation_2ecpp_26',·['binaryinformation.cpp',·['../binaryinformation_8cpp.xhtml',·1,·'']]],
29 ····['binaryinformation_2eh_27',·['binaryinformation.h',·['../binaryinformation_8h.xhtml',·1,·'']]],29 ····['binaryinformation_2eh_27',·['binaryinformation.h',·['../binaryinformation_8h.xhtml',·1,·'']]],
30 ····['bitmask_2eh_28',·['bitmask.h',·['../include_2gromacs_2utility_2bitmask_8h.xhtml',·1,·'(Global·Namespace)'],30 ····['bitmask_2eh_28',·['bitmask.h',·['../include_2gromacs_2utility_2bitmask_8h.xhtml',·1,·'(Global·Namespace)'],
31 ········['../tests_2bitmask_8h.xhtml',·1,·'(Global·Namespace)']31 ········['../tests_2bitmask_8h.xhtml',·1,·'(Global·Namespace)']
32 ····]],32 ····]],
33 ····['bonded_2ecpp_29',·['bonded.cpp',·['../bonded_8cpp.xhtml',·1,·'(Global·Namespace)'],33 ····['bonded_2ecpp_29',·['bonded.cpp',·['../tests_2bonded_8cpp.xhtml',·1,·'(Global·Namespace)'],
34 ········['../tests_2bonded_8cpp.xhtml',·1,·'(Global·Namespace)']34 ········['../bonded_8cpp.xhtml',·1,·'(Global·Namespace)']
35 ····]],35 ····]],
36 ····['bonded_2eh_30',·['bonded.h',·['../bonded_8h.xhtml',·1,·'']]],36 ····['bonded_2eh_30',·['bonded.h',·['../bonded_8h.xhtml',·1,·'']]],
37 ····['booltype_2ecpp_31',·['booltype.cpp',·['../booltype_8cpp.xhtml',·1,·'(Global·Namespace)'],37 ····['booltype_2ecpp_31',·['booltype.cpp',·['../tests_2booltype_8cpp.xhtml',·1,·'(Global·Namespace)'],
38 ········['../tests_2booltype_8cpp.xhtml',·1,·'(Global·Namespace)']38 ········['../booltype_8cpp.xhtml',·1,·'(Global·Namespace)']
39 ····]],39 ····]],
40 ····['booltype_2eh_32',·['booltype.h',·['../booltype_8h.xhtml',·1,·'']]],40 ····['booltype_2eh_32',·['booltype.h',·['../booltype_8h.xhtml',·1,·'']]],
41 ····['bootstrap_5floadstore_2ecpp_33',·['bootstrap_loadstore.cpp',·['../bootstrap__loadstore_8cpp.xhtml',·1,·'']]],41 ····['bootstrap_5floadstore_2ecpp_33',·['bootstrap_loadstore.cpp',·['../bootstrap__loadstore_8cpp.xhtml',·1,·'']]],
42 ····['boundingbox_2eh_34',·['boundingbox.h',·['../boundingbox_8h.xhtml',·1,·'']]],42 ····['boundingbox_2eh_34',·['boundingbox.h',·['../boundingbox_8h.xhtml',·1,·'']]],
43 ····['boundingbox_5fsimd_2eh_35',·['boundingbox_simd.h',·['../boundingbox__simd_8h.xhtml',·1,·'']]],43 ····['boundingbox_5fsimd_2eh_35',·['boundingbox_simd.h',·['../boundingbox__simd_8h.xhtml',·1,·'']]],
44 ····['boundingboxdistance_2eh_36',·['boundingboxdistance.h',·['../boundingboxdistance_8h.xhtml',·1,·'']]],44 ····['boundingboxdistance_2eh_36',·['boundingboxdistance.h',·['../boundingboxdistance_8h.xhtml',·1,·'']]],
45 ····['box_2ecpp_37',·['box.cpp',·['../box_8cpp.xhtml',·1,·'']]],45 ····['box_2ecpp_37',·['box.cpp',·['../box_8cpp.xhtml',·1,·'']]],
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29 ········['../gromacs_2mdrun_2replicaexchange_8cpp.xhtml',·1,·'(Global·Namespace)']29 ········['../gromacs_2mdrun_2replicaexchange_8cpp.xhtml',·1,·'(Global·Namespace)']
30 ····]],30 ····]],
31 ····['replicaexchange_2eh_23',·['replicaexchange.h',·['../replicaexchange_8h.xhtml',·1,·'']]],31 ····['replicaexchange_2eh_23',·['replicaexchange.h',·['../replicaexchange_8h.xhtml',·1,·'']]],
32 ····['replicaexchange_5fequivalence_2ecpp_24',·['replicaexchange_equivalence.cpp',·['../replicaexchange__equivalence_8cpp.xhtml',·1,·'']]],32 ····['replicaexchange_5fequivalence_2ecpp_24',·['replicaexchange_equivalence.cpp',·['../replicaexchange__equivalence_8cpp.xhtml',·1,·'']]],
33 ····['report_5fmethods_2ecpp_25',·['report_methods.cpp',·['../tests_2report__methods_8cpp.xhtml',·1,·'']]],33 ····['report_5fmethods_2ecpp_25',·['report_methods.cpp',·['../tests_2report__methods_8cpp.xhtml',·1,·'']]],
34 ····['reportgpuusage_2ecpp_26',·['reportgpuusage.cpp',·['../reportgpuusage_8cpp.xhtml',·1,·'']]],34 ····['reportgpuusage_2ecpp_26',·['reportgpuusage.cpp',·['../reportgpuusage_8cpp.xhtml',·1,·'']]],
35 ····['reportgpuusage_2eh_27',·['reportgpuusage.h',·['../reportgpuusage_8h.xhtml',·1,·'']]],35 ····['reportgpuusage_2eh_27',·['reportgpuusage.h',·['../reportgpuusage_8h.xhtml',·1,·'']]],
36 ····['requirements_2ecpp_28',·['requirements.cpp',·['../requirements_8cpp.xhtml',·1,·'(Global·Namespace)'],36 ····['requirements_2ecpp_28',·['requirements.cpp',·['../tests_2requirements_8cpp.xhtml',·1,·'(Global·Namespace)'],
37 ········['../tests_2requirements_8cpp.xhtml',·1,·'(Global·Namespace)']37 ········['../requirements_8cpp.xhtml',·1,·'(Global·Namespace)']
38 ····]],38 ····]],
39 ····['requirements_2eh_29',·['requirements.h',·['../tests_2requirements_8h.xhtml',·1,·'(Global·Namespace)'],39 ····['requirements_2eh_29',·['requirements.h',·['../requirements_8h.xhtml',·1,·'(Global·Namespace)'],
40 ········['../requirements_8h.xhtml',·1,·'(Global·Namespace)']40 ········['../tests_2requirements_8h.xhtml',·1,·'(Global·Namespace)']
41 ····]],41 ····]],
42 ····['rerun_2ecpp_30',·['rerun.cpp',·['../programs_2mdrun_2tests_2rerun_8cpp.xhtml',·1,·'(Global·Namespace)'],42 ····['rerun_2ecpp_30',·['rerun.cpp',·['../programs_2mdrun_2tests_2rerun_8cpp.xhtml',·1,·'(Global·Namespace)'],
43 ········['../gromacs_2mdrun_2rerun_8cpp.xhtml',·1,·'(Global·Namespace)']43 ········['../gromacs_2mdrun_2rerun_8cpp.xhtml',·1,·'(Global·Namespace)']
44 ····]],44 ····]],
45 ····['resall_2eh_31',·['resall.h',·['../resall_8h.xhtml',·1,·'']]],45 ····['resall_2eh_31',·['resall.h',·['../resall_8h.xhtml',·1,·'']]],
46 ····['resethandler_2ecpp_32',·['resethandler.cpp',·['../resethandler_8cpp.xhtml',·1,·'']]],46 ····['resethandler_2ecpp_32',·['resethandler.cpp',·['../resethandler_8cpp.xhtml',·1,·'']]],
47 ····['resethandler_2eh_33',·['resethandler.h',·['../resethandler_8h.xhtml',·1,·'']]],47 ····['resethandler_2eh_33',·['resethandler.h',·['../resethandler_8h.xhtml',·1,·'']]],
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63 ····['setbothtime_2ecpp_49',·['setbothtime.cpp',·['../setbothtime_8cpp.xhtml',·1,·'']]],63 ····['setbothtime_2ecpp_49',·['setbothtime.cpp',·['../setbothtime_8cpp.xhtml',·1,·'']]],
64 ····['setbox_2eh_50',·['setbox.h',·['../setbox_8h.xhtml',·1,·'']]],64 ····['setbox_2eh_50',·['setbox.h',·['../setbox_8h.xhtml',·1,·'']]],
65 ····['setenv_2eh_51',·['setenv.h',·['../setenv_8h.xhtml',·1,·'']]],65 ····['setenv_2eh_51',·['setenv.h',·['../setenv_8h.xhtml',·1,·'']]],
66 ····['setforces_2ecpp_52',·['setforces.cpp',·['../setforces_8cpp.xhtml',·1,·'']]],66 ····['setforces_2ecpp_52',·['setforces.cpp',·['../setforces_8cpp.xhtml',·1,·'']]],
67 ····['setforces_2eh_53',·['setforces.h',·['../setforces_8h.xhtml',·1,·'']]],67 ····['setforces_2eh_53',·['setforces.h',·['../setforces_8h.xhtml',·1,·'']]],
68 ····['setprecision_2ecpp_54',·['setprecision.cpp',·['../setprecision_8cpp.xhtml',·1,·'']]],68 ····['setprecision_2ecpp_54',·['setprecision.cpp',·['../setprecision_8cpp.xhtml',·1,·'']]],
69 ····['setprecision_2eh_55',·['setprecision.h',·['../setprecision_8h.xhtml',·1,·'']]],69 ····['setprecision_2eh_55',·['setprecision.h',·['../setprecision_8h.xhtml',·1,·'']]],
70 ····['setstarttime_2ecpp_56',·['setstarttime.cpp',·['../tests_2setstarttime_8cpp.xhtml',·1,·'(Global·Namespace)'],70 ····['setstarttime_2ecpp_56',·['setstarttime.cpp',·['../outputadapters_2setstarttime_8cpp.xhtml',·1,·'(Global·Namespace)'],
71 ········['../outputadapters_2setstarttime_8cpp.xhtml',·1,·'(Global·Namespace)']71 ········['../tests_2setstarttime_8cpp.xhtml',·1,·'(Global·Namespace)']
72 ····]],72 ····]],
73 ····['setstarttime_2eh_57',·['setstarttime.h',·['../setstarttime_8h.xhtml',·1,·'']]],73 ····['setstarttime_2eh_57',·['setstarttime.h',·['../setstarttime_8h.xhtml',·1,·'']]],
74 ····['settimestep_2ecpp_58',·['settimestep.cpp',·['../outputadapters_2settimestep_8cpp.xhtml',·1,·'(Global·Namespace)'],74 ····['settimestep_2ecpp_58',·['settimestep.cpp',·['../outputadapters_2settimestep_8cpp.xhtml',·1,·'(Global·Namespace)'],
75 ········['../tests_2settimestep_8cpp.xhtml',·1,·'(Global·Namespace)']75 ········['../tests_2settimestep_8cpp.xhtml',·1,·'(Global·Namespace)']
76 ····]],76 ····]],
77 ····['settimestep_2eh_59',·['settimestep.h',·['../settimestep_8h.xhtml',·1,·'']]],77 ····['settimestep_2eh_59',·['settimestep.h',·['../settimestep_8h.xhtml',·1,·'']]],
78 ····['settle_2ecpp_60',·['settle.cpp',·['../tests_2settle_8cpp.xhtml',·1,·'(Global·Namespace)'],78 ····['settle_2ecpp_60',·['settle.cpp',·['../tests_2settle_8cpp.xhtml',·1,·'(Global·Namespace)'],
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92 ····['setvelocities_2eh_72',·['setvelocities.h',·['../setvelocities_8h.xhtml',·1,·'']]],92 ····['setvelocities_2eh_72',·['setvelocities.h',·['../setvelocities_8h.xhtml',·1,·'']]],
93 ····['shake_2ecpp_73',·['shake.cpp',·['../shake_8cpp.xhtml',·1,·'']]],93 ····['shake_2ecpp_73',·['shake.cpp',·['../shake_8cpp.xhtml',·1,·'']]],
94 ····['shake_2eh_74',·['shake.h',·['../shake_8h.xhtml',·1,·'']]],94 ····['shake_2eh_74',·['shake.h',·['../shake_8h.xhtml',·1,·'']]],
95 ····['shellcompletions_2ecpp_75',·['shellcompletions.cpp',·['../shellcompletions_8cpp.xhtml',·1,·'']]],95 ····['shellcompletions_2ecpp_75',·['shellcompletions.cpp',·['../shellcompletions_8cpp.xhtml',·1,·'']]],
96 ····['shellcompletions_2eh_76',·['shellcompletions.h',·['../shellcompletions_8h.xhtml',·1,·'']]],96 ····['shellcompletions_2eh_76',·['shellcompletions.h',·['../shellcompletions_8h.xhtml',·1,·'']]],
97 ····['signallers_2ecpp_77',·['signallers.cpp',·['../signallers_8cpp.xhtml',·1,·'']]],97 ····['signallers_2ecpp_77',·['signallers.cpp',·['../signallers_8cpp.xhtml',·1,·'']]],
98 ····['signallers_2eh_78',·['signallers.h',·['../signallers_8h.xhtml',·1,·'']]],98 ····['signallers_2eh_78',·['signallers.h',·['../signallers_8h.xhtml',·1,·'']]],
99 ····['simd_2eh_79',·['simd.h',·['../tests_2simd_8h.xhtml',·1,·'(Global·Namespace)'],99 ····['simd_2eh_79',·['simd.h',·['../include_2gromacs_2simd_2simd_8h.xhtml',·1,·'(Global·Namespace)'],
100 ········['../include_2gromacs_2simd_2simd_8h.xhtml',·1,·'(Global·Namespace)']100 ········['../tests_2simd_8h.xhtml',·1,·'(Global·Namespace)']
101 ····]],101 ····]],
102 ····['simd4_2eh_80',·['simd4.h',·['../simd4_8h.xhtml',·1,·'']]],102 ····['simd4_2eh_80',·['simd4.h',·['../simd4_8h.xhtml',·1,·'']]],
103 ····['simd_5fenergy_5faccumulator_2ecpp_81',·['simd_energy_accumulator.cpp',·['../tests_2simd__energy__accumulator_8cpp.xhtml',·1,·'']]],103 ····['simd_5fenergy_5faccumulator_2ecpp_81',·['simd_energy_accumulator.cpp',·['../tests_2simd__energy__accumulator_8cpp.xhtml',·1,·'']]],
104 ····['simd_5fkernel_2eh_82',·['simd_kernel.h',·['../simd__kernel_8h.xhtml',·1,·'']]],104 ····['simd_5fkernel_2eh_82',·['simd_kernel.h',·['../simd__kernel_8h.xhtml',·1,·'']]],
105 ····['simd_5fload_5fstore_5ffunctions_2eh_83',·['simd_load_store_functions.h',·['../simd__load__store__functions_8h.xhtml',·1,·'']]],105 ····['simd_5fload_5fstore_5ffunctions_2eh_83',·['simd_load_store_functions.h',·['../simd__load__store__functions_8h.xhtml',·1,·'']]],
106 ····['simd_5fmath_2eh_84',·['simd_math.h',·['../simd__math_8h.xhtml',·1,·'']]],106 ····['simd_5fmath_2eh_84',·['simd_math.h',·['../simd__math_8h.xhtml',·1,·'']]],
107 ····['simd_5fmemory_2ecpp_85',·['simd_memory.cpp',·['../simd__memory_8cpp.xhtml',·1,·'']]],107 ····['simd_5fmemory_2ecpp_85',·['simd_memory.cpp',·['../simd__memory_8cpp.xhtml',·1,·'']]],
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20 ········['../usergpuids_8cpp.xhtml',·1,·'(Global·Namespace)']20 ········['../usergpuids_8cpp.xhtml',·1,·'(Global·Namespace)']
21 ····]],21 ····]],
22 ····['usergpuids_2eh_18',·['usergpuids.h',·['../usergpuids_8h.xhtml',·1,·'']]],22 ····['usergpuids_2eh_18',·['usergpuids.h',·['../usergpuids_8h.xhtml',·1,·'']]],
23 ····['utilities_2eh_19',·['utilities.h',·['../src_2gromacs_2mimic_2utilities_8h.xhtml',·1,·'(Global·Namespace)'],23 ····['utilities_2eh_19',·['utilities.h',·['../src_2gromacs_2mimic_2utilities_8h.xhtml',·1,·'(Global·Namespace)'],
24 ········['../src_2gromacs_2listed__forces_2utilities_8h.xhtml',·1,·'(Global·Namespace)']24 ········['../src_2gromacs_2listed__forces_2utilities_8h.xhtml',·1,·'(Global·Namespace)']
25 ····]],25 ····]],
26 ····['utility_2ecpp_20',·['utility.cpp',·['../utility_8cpp.xhtml',·1,·'']]],26 ····['utility_2ecpp_20',·['utility.cpp',·['../utility_8cpp.xhtml',·1,·'']]],
27 ····['utility_2eh_21',·['utility.h',·['../utility_8h.xhtml',·1,·'(Global·Namespace)'],27 ····['utility_2eh_21',·['utility.h',·['../domdec_2utility_8h.xhtml',·1,·'(Global·Namespace)'],
28 ········['../domdec_2utility_8h.xhtml',·1,·'(Global·Namespace)']28 ········['../utility_8h.xhtml',·1,·'(Global·Namespace)']
29 ····]]29 ····]]
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47 ········['../tests_2cmdlineparser_8cpp.xhtml',·1,·'(Global·Namespace)']47 ········['../tests_2cmdlineparser_8cpp.xhtml',·1,·'(Global·Namespace)']
48 ····]],48 ····]],
49 ····['cmdlineparser_2eh_35',·['cmdlineparser.h',·['../cmdlineparser_8h.xhtml',·1,·'']]],49 ····['cmdlineparser_2eh_35',·['cmdlineparser.h',·['../cmdlineparser_8h.xhtml',·1,·'']]],
50 ····['cmdlineprogramcontext_2ecpp_36',·['cmdlineprogramcontext.cpp',·['../cmdlineprogramcontext_8cpp.xhtml',·1,·'(Global·Namespace)'],50 ····['cmdlineprogramcontext_2ecpp_36',·['cmdlineprogramcontext.cpp',·['../cmdlineprogramcontext_8cpp.xhtml',·1,·'(Global·Namespace)'],
51 ········['../tests_2cmdlineprogramcontext_8cpp.xhtml',·1,·'(Global·Namespace)']51 ········['../tests_2cmdlineprogramcontext_8cpp.xhtml',·1,·'(Global·Namespace)']
52 ····]],52 ····]],
53 ····['cmdlineprogramcontext_2eh_37',·['cmdlineprogramcontext.h',·['../cmdlineprogramcontext_8h.xhtml',·1,·'']]],53 ····['cmdlineprogramcontext_2eh_37',·['cmdlineprogramcontext.h',·['../cmdlineprogramcontext_8h.xhtml',·1,·'']]],
54 ····['cmdlinerunner_2ecpp_38',·['cmdlinerunner.cpp',·['../tests_2cmdlinerunner_8cpp.xhtml',·1,·'(Global·Namespace)'],54 ····['cmdlinerunner_2ecpp_38',·['cmdlinerunner.cpp',·['../cmdlinerunner_8cpp.xhtml',·1,·'(Global·Namespace)'],
55 ········['../cmdlinerunner_8cpp.xhtml',·1,·'(Global·Namespace)']55 ········['../tests_2cmdlinerunner_8cpp.xhtml',·1,·'(Global·Namespace)']
56 ····]],56 ····]],
57 ····['cmdlinerunner_2eh_39',·['cmdlinerunner.h',·['../cmdlinerunner_8h.xhtml',·1,·'']]],57 ····['cmdlinerunner_2eh_39',·['cmdlinerunner.h',·['../cmdlinerunner_8h.xhtml',·1,·'']]],
58 ····['cmdlinetest_2ecpp_40',·['cmdlinetest.cpp',·['../cmdlinetest_8cpp.xhtml',·1,·'']]],58 ····['cmdlinetest_2ecpp_40',·['cmdlinetest.cpp',·['../cmdlinetest_8cpp.xhtml',·1,·'']]],
59 ····['cmdlinetest_2eh_41',·['cmdlinetest.h',·['../cmdlinetest_8h.xhtml',·1,·'']]],59 ····['cmdlinetest_2eh_41',·['cmdlinetest.h',·['../cmdlinetest_8h.xhtml',·1,·'']]],
60 ····['collect_2eh_42',·['collect.h',·['../collect_8h.xhtml',·1,·'']]],60 ····['collect_2eh_42',·['collect.h',·['../collect_8h.xhtml',·1,·'']]],
61 ····['colvarproxy_5fgromacs_5fversion_2eh_43',·['colvarproxy_gromacs_version.h',·['../colvarproxy__gromacs__version_8h.xhtml',·1,·'']]],61 ····['colvarproxy_5fgromacs_5fversion_2eh_43',·['colvarproxy_gromacs_version.h',·['../colvarproxy__gromacs__version_8h.xhtml',·1,·'']]],
62 ····['colvarproxygromacs_2ecpp_44',·['colvarproxygromacs.cpp',·['../colvarproxygromacs_8cpp.xhtml',·1,·'']]],62 ····['colvarproxygromacs_2ecpp_44',·['colvarproxygromacs.cpp',·['../colvarproxygromacs_8cpp.xhtml',·1,·'']]],
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20 ····['decidesimulationworkload_2eh_18',·['decidesimulationworkload.h',·['../decidesimulationworkload_8h.xhtml',·1,·'']]],20 ····['decidesimulationworkload_2eh_18',·['decidesimulationworkload.h',·['../decidesimulationworkload_8h.xhtml',·1,·'']]],
21 ····['defaultinitializationallocator_2ecpp_19',·['defaultinitializationallocator.cpp',·['../defaultinitializationallocator_8cpp.xhtml',·1,·'']]],21 ····['defaultinitializationallocator_2ecpp_19',·['defaultinitializationallocator.cpp',·['../defaultinitializationallocator_8cpp.xhtml',·1,·'']]],
22 ····['defaultinitializationallocator_2eh_20',·['defaultinitializationallocator.h',·['../defaultinitializationallocator_8h.xhtml',·1,·'']]],22 ····['defaultinitializationallocator_2eh_20',·['defaultinitializationallocator.h',·['../defaultinitializationallocator_8h.xhtml',·1,·'']]],
23 ····['densityfit_2ecpp_21',·['densityfit.cpp',·['../densityfit_8cpp.xhtml',·1,·'(Global·Namespace)'],23 ····['densityfit_2ecpp_21',·['densityfit.cpp',·['../densityfit_8cpp.xhtml',·1,·'(Global·Namespace)'],
24 ········['../tests_2densityfit_8cpp.xhtml',·1,·'(Global·Namespace)']24 ········['../tests_2densityfit_8cpp.xhtml',·1,·'(Global·Namespace)']
25 ····]],25 ····]],
26 ····['densityfit_2eh_22',·['densityfit.h',·['../densityfit_8h.xhtml',·1,·'']]],26 ····['densityfit_2eh_22',·['densityfit.h',·['../densityfit_8h.xhtml',·1,·'']]],
27 ····['densityfitting_2ecpp_23',·['densityfitting.cpp',·['../densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)'],27 ····['densityfitting_2ecpp_23',·['densityfitting.cpp',·['../tests_2densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)'],
28 ········['../tests_2densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)']28 ········['../densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)']
29 ····]],29 ····]],
30 ····['densityfittingamplitudelookup_2ecpp_24',·['densityfittingamplitudelookup.cpp',·['../densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)'],30 ····['densityfittingamplitudelookup_2ecpp_24',·['densityfittingamplitudelookup.cpp',·['../tests_2densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)'],
31 ········['../tests_2densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)']31 ········['../densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)']
32 ····]],32 ····]],
33 ····['densityfittingamplitudelookup_2eh_25',·['densityfittingamplitudelookup.h',·['../densityfittingamplitudelookup_8h.xhtml',·1,·'']]],33 ····['densityfittingamplitudelookup_2eh_25',·['densityfittingamplitudelookup.h',·['../densityfittingamplitudelookup_8h.xhtml',·1,·'']]],
34 ····['densityfittingforce_2ecpp_26',·['densityfittingforce.cpp',·['../densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)'],34 ····['densityfittingforce_2ecpp_26',·['densityfittingforce.cpp',·['../densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)'],
35 ········['../tests_2densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)']35 ········['../tests_2densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)']
36 ····]],36 ····]],
37 ····['densityfittingforce_2eh_27',·['densityfittingforce.h',·['../densityfittingforce_8h.xhtml',·1,·'']]],37 ····['densityfittingforce_2eh_27',·['densityfittingforce.h',·['../densityfittingforce_8h.xhtml',·1,·'']]],
38 ····['densityfittingforceprovider_2ecpp_28',·['densityfittingforceprovider.cpp',·['../tests_2densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],38 ····['densityfittingforceprovider_2ecpp_28',·['densityfittingforceprovider.cpp',·['../densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],
39 ········['../densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']39 ········['../tests_2densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']
40 ····]],40 ····]],
41 ····['densityfittingforceprovider_2eh_29',·['densityfittingforceprovider.h',·['../densityfittingforceprovider_8h.xhtml',·1,·'']]],41 ····['densityfittingforceprovider_2eh_29',·['densityfittingforceprovider.h',·['../densityfittingforceprovider_8h.xhtml',·1,·'']]],
42 ····['densityfittingmodule_2ecpp_30',·['densityfittingmodule.cpp',·['../densityfittingmodule_8cpp.xhtml',·1,·'']]],42 ····['densityfittingmodule_2ecpp_30',·['densityfittingmodule.cpp',·['../densityfittingmodule_8cpp.xhtml',·1,·'']]],
43 ····['densityfittingoptions_2ecpp_31',·['densityfittingoptions.cpp',·['../tests_2densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],43 ····['densityfittingoptions_2ecpp_31',·['densityfittingoptions.cpp',·['../tests_2densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],
44 ········['../densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)']44 ········['../densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)']
45 ····]],45 ····]],
46 ····['densityfittingoptions_2eh_32',·['densityfittingoptions.h',·['../densityfittingoptions_8h.xhtml',·1,·'']]],46 ····['densityfittingoptions_2eh_32',·['densityfittingoptions.h',·['../densityfittingoptions_8h.xhtml',·1,·'']]],
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124 ····['domdec_5fstruct_2eh_104',·['domdec_struct.h',·['../domdec__struct_8h.xhtml',·1,·'']]],124 ····['domdec_5fstruct_2eh_104',·['domdec_struct.h',·['../domdec__struct_8h.xhtml',·1,·'']]],
125 ····['domdec_5fvsite_2ecpp_105',·['domdec_vsite.cpp',·['../domdec__vsite_8cpp.xhtml',·1,·'']]],125 ····['domdec_5fvsite_2ecpp_105',·['domdec_vsite.cpp',·['../domdec__vsite_8cpp.xhtml',·1,·'']]],
126 ····['domdec_5fvsite_2eh_106',·['domdec_vsite.h',·['../domdec__vsite_8h.xhtml',·1,·'']]],126 ····['domdec_5fvsite_2eh_106',·['domdec_vsite.h',·['../domdec__vsite_8h.xhtml',·1,·'']]],
127 ····['domdec_5fzones_2ecpp_107',·['domdec_zones.cpp',·['../domdec__zones_8cpp.xhtml',·1,·'']]],127 ····['domdec_5fzones_2ecpp_107',·['domdec_zones.cpp',·['../domdec__zones_8cpp.xhtml',·1,·'']]],
128 ····['domdec_5fzones_2eh_108',·['domdec_zones.h',·['../domdec__zones_8h.xhtml',·1,·'']]],128 ····['domdec_5fzones_2eh_108',·['domdec_zones.h',·['../domdec__zones_8h.xhtml',·1,·'']]],
129 ····['domdechelper_2ecpp_109',·['domdechelper.cpp',·['../domdechelper_8cpp.xhtml',·1,·'']]],129 ····['domdechelper_2ecpp_109',·['domdechelper.cpp',·['../domdechelper_8cpp.xhtml',·1,·'']]],
130 ····['domdechelper_2eh_110',·['domdechelper.h',·['../domdechelper_8h.xhtml',·1,·'']]],130 ····['domdechelper_2eh_110',·['domdechelper.h',·['../domdechelper_8h.xhtml',·1,·'']]],
131 ····['dssp_2ecpp_111',·['dssp.cpp',·['../modules_2dssp_8cpp.xhtml',·1,·'(Global·Namespace)'],131 ····['dssp_2ecpp_111',·['dssp.cpp',·['../tests_2dssp_8cpp.xhtml',·1,·'(Global·Namespace)'],
132 ········['../tests_2dssp_8cpp.xhtml',·1,·'(Global·Namespace)']132 ········['../modules_2dssp_8cpp.xhtml',·1,·'(Global·Namespace)']
133 ····]],133 ····]],
134 ····['dssp_2eh_112',·['dssp.h',·['../dssp_8h.xhtml',·1,·'']]],134 ····['dssp_2eh_112',·['dssp.h',·['../dssp_8h.xhtml',·1,·'']]],
135 ····['dump_2ecpp_113',·['dump.cpp',·['../domdec_2dump_8cpp.xhtml',·1,·'(Global·Namespace)'],135 ····['dump_2ecpp_113',·['dump.cpp',·['../tools_2tests_2dump_8cpp.xhtml',·1,·'(Global·Namespace)'],
136 ········['../tools_2dump_8cpp.xhtml',·1,·'(Global·Namespace)'],136 ········['../tools_2dump_8cpp.xhtml',·1,·'(Global·Namespace)'],
137 ········['../tools_2tests_2dump_8cpp.xhtml',·1,·'(Global·Namespace)']137 ········['../domdec_2dump_8cpp.xhtml',·1,·'(Global·Namespace)']
138 ····]],138 ····]],
139 ····['dump_2eh_114',·['dump.h',·['../domdec_2dump_8h.xhtml',·1,·'']]]139 ····['dump_2eh_114',·['dump.h',·['../domdec_2dump_8h.xhtml',·1,·'']]]
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7 ····['electricfield_2eh_3',·['electricfield.h',·['../electricfield_8h.xhtml',·1,·'']]],7 ····['electricfield_2eh_3',·['electricfield.h',·['../electricfield_8h.xhtml',·1,·'']]],
8 ····['enerdata_2ecpp_4',·['enerdata.cpp',·['../enerdata_8cpp.xhtml',·1,·'']]],8 ····['enerdata_2ecpp_4',·['enerdata.cpp',·['../enerdata_8cpp.xhtml',·1,·'']]],
9 ····['energyanalysisframe_2eh_5',·['energyanalysisframe.h',·['../energyanalysisframe_8h.xhtml',·1,·'']]],9 ····['energyanalysisframe_2eh_5',·['energyanalysisframe.h',·['../energyanalysisframe_8h.xhtml',·1,·'']]],
10 ····['energycomparison_2ecpp_6',·['energycomparison.cpp',·['../energycomparison_8cpp.xhtml',·1,·'']]],10 ····['energycomparison_2ecpp_6',·['energycomparison.cpp',·['../energycomparison_8cpp.xhtml',·1,·'']]],
11 ····['energycomparison_2eh_7',·['energycomparison.h',·['../energycomparison_8h.xhtml',·1,·'']]],11 ····['energycomparison_2eh_7',·['energycomparison.h',·['../energycomparison_8h.xhtml',·1,·'']]],
12 ····['energydata_2ecpp_8',·['energydata.cpp',·['../energydata_8cpp.xhtml',·1,·'']]],12 ····['energydata_2ecpp_8',·['energydata.cpp',·['../energydata_8cpp.xhtml',·1,·'']]],
13 ····['energydata_2eh_9',·['energydata.h',·['../energydata_8h.xhtml',·1,·'']]],13 ····['energydata_2eh_9',·['energydata.h',·['../energydata_8h.xhtml',·1,·'']]],
14 ····['energydrifttracker_2ecpp_10',·['energydrifttracker.cpp',·['../energydrifttracker_8cpp.xhtml',·1,·'(Global·Namespace)'],14 ····['energydrifttracker_2ecpp_10',·['energydrifttracker.cpp',·['../tests_2energydrifttracker_8cpp.xhtml',·1,·'(Global·Namespace)'],
15 ········['../tests_2energydrifttracker_8cpp.xhtml',·1,·'(Global·Namespace)']15 ········['../energydrifttracker_8cpp.xhtml',·1,·'(Global·Namespace)']
16 ····]],16 ····]],
17 ····['energydrifttracker_2eh_11',·['energydrifttracker.h',·['../energydrifttracker_8h.xhtml',·1,·'']]],17 ····['energydrifttracker_2eh_11',·['energydrifttracker.h',·['../energydrifttracker_8h.xhtml',·1,·'']]],
18 ····['energyframe_2ecpp_12',·['energyframe.cpp',·['../energyframe_8cpp.xhtml',·1,·'']]],18 ····['energyframe_2ecpp_12',·['energyframe.cpp',·['../energyframe_8cpp.xhtml',·1,·'']]],
19 ····['energyhistory_2eh_13',·['energyhistory.h',·['../energyhistory_8h.xhtml',·1,·'']]],19 ····['energyhistory_2eh_13',·['energyhistory.h',·['../energyhistory_8h.xhtml',·1,·'']]],
20 ····['energyoutput_2ecpp_14',·['energyoutput.cpp',·['../tests_2energyoutput_8cpp.xhtml',·1,·'(Global·Namespace)'],20 ····['energyoutput_2ecpp_14',·['energyoutput.cpp',·['../energyoutput_8cpp.xhtml',·1,·'(Global·Namespace)'],
21 ········['../energyoutput_8cpp.xhtml',·1,·'(Global·Namespace)']21 ········['../tests_2energyoutput_8cpp.xhtml',·1,·'(Global·Namespace)']
22 ····]],22 ····]],
23 ····['energyoutput_2eh_15',·['energyoutput.h',·['../energyoutput_8h.xhtml',·1,·'']]],23 ····['energyoutput_2eh_15',·['energyoutput.h',·['../energyoutput_8h.xhtml',·1,·'']]],
24 ····['energyreader_2ecpp_16',·['energyreader.cpp',·['../energyreader_8cpp.xhtml',·1,·'']]],24 ····['energyreader_2ecpp_16',·['energyreader.cpp',·['../energyreader_8cpp.xhtml',·1,·'']]],
25 ····['energyreader_2eh_17',·['energyreader.h',·['../energyreader_8h.xhtml',·1,·'']]],25 ····['energyreader_2eh_17',·['energyreader.h',·['../energyreader_8h.xhtml',·1,·'']]],
26 ····['energyterm_2ecpp_18',·['energyterm.cpp',·['../tests_2energyterm_8cpp.xhtml',·1,·'(Global·Namespace)'],26 ····['energyterm_2ecpp_18',·['energyterm.cpp',·['../tests_2energyterm_8cpp.xhtml',·1,·'(Global·Namespace)'],
27 ········['../energyterm_8cpp.xhtml',·1,·'(Global·Namespace)']27 ········['../energyterm_8cpp.xhtml',·1,·'(Global·Namespace)']
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4 ····['haloexchange_2ecpp_2',·['haloexchange.cpp',·['../haloexchange_8cpp.xhtml',·1,·'']]],4 ····['haloexchange_2ecpp_2',·['haloexchange.cpp',·['../haloexchange_8cpp.xhtml',·1,·'']]],
5 ····['haloexchange_2eh_3',·['haloexchange.h',·['../haloexchange_8h.xhtml',·1,·'']]],5 ····['haloexchange_2eh_3',·['haloexchange.h',·['../haloexchange_8h.xhtml',·1,·'']]],
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7 ····['haloexchangesetup_2ecpp_5',·['haloexchangesetup.cpp',·['../haloexchangesetup_8cpp.xhtml',·1,·'']]],7 ····['haloexchangesetup_2ecpp_5',·['haloexchangesetup.cpp',·['../haloexchangesetup_8cpp.xhtml',·1,·'']]],
8 ····['handlerestart_2ecpp_6',·['handlerestart.cpp',·['../handlerestart_8cpp.xhtml',·1,·'']]],8 ····['handlerestart_2ecpp_6',·['handlerestart.cpp',·['../handlerestart_8cpp.xhtml',·1,·'']]],
9 ····['handlerestart_2eh_7',·['handlerestart.h',·['../handlerestart_8h.xhtml',·1,·'']]],9 ····['handlerestart_2eh_7',·['handlerestart.h',·['../handlerestart_8h.xhtml',·1,·'']]],
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11 ········['../tests_2hardwaretopology_8cpp.xhtml',·1,·'(Global·Namespace)']11 ········['../hardwaretopology_8cpp.xhtml',·1,·'(Global·Namespace)']
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14 ····['hashedmap_2ecpp_10',·['hashedmap.cpp',·['../hashedmap_8cpp.xhtml',·1,·'']]],14 ····['hashedmap_2ecpp_10',·['hashedmap.cpp',·['../hashedmap_8cpp.xhtml',·1,·'']]],
15 ····['hashedmap_2eh_11',·['hashedmap.h',·['../hashedmap_8h.xhtml',·1,·'']]],15 ····['hashedmap_2eh_11',·['hashedmap.h',·['../hashedmap_8h.xhtml',·1,·'']]],
16 ····['hbond_2ecpp_12',·['hbond.cpp',·['../modules_2hbond_8cpp.xhtml',·1,·'(Global·Namespace)'],16 ····['hbond_2ecpp_12',·['hbond.cpp',·['../modules_2hbond_8cpp.xhtml',·1,·'(Global·Namespace)'],
17 ········['../tests_2hbond_8cpp.xhtml',·1,·'(Global·Namespace)']17 ········['../tests_2hbond_8cpp.xhtml',·1,·'(Global·Namespace)']
18 ····]],18 ····]],
19 ····['hbond_2eh_13',·['hbond.h',·['../hbond_8h.xhtml',·1,·'']]],19 ····['hbond_2eh_13',·['hbond.h',·['../hbond_8h.xhtml',·1,·'']]],
20 ····['helpformat_2ecpp_14',·['helpformat.cpp',·['../tests_2helpformat_8cpp.xhtml',·1,·'(Global·Namespace)'],20 ····['helpformat_2ecpp_14',·['helpformat.cpp',·['../helpformat_8cpp.xhtml',·1,·'(Global·Namespace)'],
21 ········['../helpformat_8cpp.xhtml',·1,·'(Global·Namespace)']21 ········['../tests_2helpformat_8cpp.xhtml',·1,·'(Global·Namespace)']
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23 ····['helpformat_2eh_15',·['helpformat.h',·['../helpformat_8h.xhtml',·1,·'']]],23 ····['helpformat_2eh_15',·['helpformat.h',·['../helpformat_8h.xhtml',·1,·'']]],
24 ····['helpmanager_2ecpp_16',·['helpmanager.cpp',·['../helpmanager_8cpp.xhtml',·1,·'(Global·Namespace)'],24 ····['helpmanager_2ecpp_16',·['helpmanager.cpp',·['../helpmanager_8cpp.xhtml',·1,·'(Global·Namespace)'],
25 ········['../tests_2helpmanager_8cpp.xhtml',·1,·'(Global·Namespace)']25 ········['../tests_2helpmanager_8cpp.xhtml',·1,·'(Global·Namespace)']
26 ····]],26 ····]],
27 ····['helpmanager_2eh_17',·['helpmanager.h',·['../helpmanager_8h.xhtml',·1,·'']]],27 ····['helpmanager_2eh_17',·['helpmanager.h',·['../helpmanager_8h.xhtml',·1,·'']]],
28 ····['helptopic_2ecpp_18',·['helptopic.cpp',·['../helptopic_8cpp.xhtml',·1,·'']]],28 ····['helptopic_2ecpp_18',·['helptopic.cpp',·['../helptopic_8cpp.xhtml',·1,·'']]],
29 ····['helptopic_2eh_19',·['helptopic.h',·['../helptopic_8h.xhtml',·1,·'']]],29 ····['helptopic_2eh_19',·['helptopic.h',·['../helptopic_8h.xhtml',·1,·'']]],
30 ····['helpwritercontext_2ecpp_20',·['helpwritercontext.cpp',·['../helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)'],30 ····['helpwritercontext_2ecpp_20',·['helpwritercontext.cpp',·['../helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)'],
31 ········['../tests_2helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)']31 ········['../tests_2helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)']
32 ····]],32 ····]],
33 ····['helpwritercontext_2eh_21',·['helpwritercontext.h',·['../helpwritercontext_8h.xhtml',·1,·'']]],33 ····['helpwritercontext_2eh_21',·['helpwritercontext.h',·['../helpwritercontext_8h.xhtml',·1,·'']]],
34 ····['helpwriting_2ecpp_22',·['helpwriting.cpp',·['../programs_2mdrun_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)'],34 ····['helpwriting_2ecpp_22',·['helpwriting.cpp',·['../gromacs_2tools_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)'],
35 ········['../gromacs_2tools_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)']35 ········['../programs_2mdrun_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)']
36 ····]],36 ····]],
37 ····['hip_5fkernel_5futils_2eh_23',·['hip_kernel_utils.h',·['../hip__kernel__utils_8h.xhtml',·1,·'']]],37 ····['hip_5fkernel_5futils_2eh_23',·['hip_kernel_utils.h',·['../hip__kernel__utils_8h.xhtml',·1,·'']]],
38 ····['histogram_2ecpp_24',·['histogram.cpp',·['../tests_2histogram_8cpp.xhtml',·1,·'(Global·Namespace)'],38 ····['histogram_2ecpp_24',·['histogram.cpp',·['../tests_2histogram_8cpp.xhtml',·1,·'(Global·Namespace)'],
39 ········['../modules_2histogram_8cpp.xhtml',·1,·'(Global·Namespace)']39 ········['../modules_2histogram_8cpp.xhtml',·1,·'(Global·Namespace)']
40 ····]],40 ····]],
41 ····['histogram_2eh_25',·['histogram.h',·['../histogram_8h.xhtml',·1,·'']]],41 ····['histogram_2eh_25',·['histogram.h',·['../histogram_8h.xhtml',·1,·'']]],
42 ····['histogramsize_2ecpp_26',·['histogramsize.cpp',·['../histogramsize_8cpp.xhtml',·1,·'']]],42 ····['histogramsize_2ecpp_26',·['histogramsize.cpp',·['../histogramsize_8cpp.xhtml',·1,·'']]],
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64 ····['niceheader_2ecpp_58',·['niceheader.cpp',·['../niceheader_8cpp.xhtml',·1,·'']]],64 ····['niceheader_2ecpp_58',·['niceheader.cpp',·['../niceheader_8cpp.xhtml',·1,·'']]],
65 ····['niceheader_2eh_59',·['niceheader.h',·['../niceheader_8h.xhtml',·1,·'']]],65 ····['niceheader_2eh_59',·['niceheader.h',·['../niceheader_8h.xhtml',·1,·'']]],
66 ····['nnpot_2ecpp_60',·['nnpot.cpp',·['../nnpot_8cpp.xhtml',·1,·'(Global·Namespace)'],66 ····['nnpot_2ecpp_60',·['nnpot.cpp',·['../nnpot_8cpp.xhtml',·1,·'(Global·Namespace)'],
67 ········['../tests_2nnpot_8cpp.xhtml',·1,·'(Global·Namespace)']67 ········['../tests_2nnpot_8cpp.xhtml',·1,·'(Global·Namespace)']
68 ····]],68 ····]],
69 ····['nnpot_2eh_61',·['nnpot.h',·['../nnpot_8h.xhtml',·1,·'']]],69 ····['nnpot_2eh_61',·['nnpot.h',·['../nnpot_8h.xhtml',·1,·'']]],
70 ····['nnpotforceprovider_2ecpp_62',·['nnpotforceprovider.cpp',·['../nnpotforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],70 ····['nnpotforceprovider_2ecpp_62',·['nnpotforceprovider.cpp',·['../tests_2nnpotforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'],
71 ········['../tests_2nnpotforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']71 ········['../nnpotforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)']
72 ····]],72 ····]],
73 ····['nnpotforceprovider_2eh_63',·['nnpotforceprovider.h',·['../nnpotforceprovider_8h.xhtml',·1,·'']]],73 ····['nnpotforceprovider_2eh_63',·['nnpotforceprovider.h',·['../nnpotforceprovider_8h.xhtml',·1,·'']]],
74 ····['nnpotforceprovider_5fstub_2ecpp_64',·['nnpotforceprovider_stub.cpp',·['../nnpotforceprovider__stub_8cpp.xhtml',·1,·'']]],74 ····['nnpotforceprovider_5fstub_2ecpp_64',·['nnpotforceprovider_stub.cpp',·['../nnpotforceprovider__stub_8cpp.xhtml',·1,·'']]],
75 ····['nnpotmodel_2eh_65',·['nnpotmodel.h',·['../nnpotmodel_8h.xhtml',·1,·'']]],75 ····['nnpotmodel_2eh_65',·['nnpotmodel.h',·['../nnpotmodel_8h.xhtml',·1,·'']]],
76 ····['nnpotoptions_2ecpp_66',·['nnpotoptions.cpp',·['../nnpotoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],76 ····['nnpotoptions_2ecpp_66',·['nnpotoptions.cpp',·['../tests_2nnpotoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],
77 ········['../tests_2nnpotoptions_8cpp.xhtml',·1,·'(Global·Namespace)']77 ········['../nnpotoptions_8cpp.xhtml',·1,·'(Global·Namespace)']
78 ····]],78 ····]],
79 ····['nnpotoptions_2eh_67',·['nnpotoptions.h',·['../nnpotoptions_8h.xhtml',·1,·'']]],79 ····['nnpotoptions_2eh_67',·['nnpotoptions.h',·['../nnpotoptions_8h.xhtml',·1,·'']]],
80 ····['nnpottopologypreprocessor_2ecpp_68',·['nnpottopologypreprocessor.cpp',·['../tests_2nnpottopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],80 ····['nnpottopologypreprocessor_2ecpp_68',·['nnpottopologypreprocessor.cpp',·['../tests_2nnpottopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],
81 ········['../nnpottopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']81 ········['../nnpottopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']
82 ····]],82 ····]],
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84 ····['nodelete_2eh_70',·['nodelete.h',·['../nodelete_8h.xhtml',·1,·'']]],84 ····['nodelete_2eh_70',·['nodelete.h',·['../nodelete_8h.xhtml',·1,·'']]],
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64 ····['plot_2eh_52',·['plot.h',·['../plot_8h.xhtml',·1,·'']]],64 ····['plot_2eh_52',·['plot.h',·['../plot_8h.xhtml',·1,·'']]],
65 ····['plumedforceprovider_2ecpp_53',·['plumedforceprovider.cpp',·['../plumedforceprovider_8cpp.xhtml',·1,·'']]],65 ····['plumedforceprovider_2ecpp_53',·['plumedforceprovider.cpp',·['../plumedforceprovider_8cpp.xhtml',·1,·'']]],
66 ····['plumedforceprovider_2eh_54',·['plumedforceprovider.h',·['../plumedforceprovider_8h.xhtml',·1,·'']]],66 ····['plumedforceprovider_2eh_54',·['plumedforceprovider.h',·['../plumedforceprovider_8h.xhtml',·1,·'']]],
67 ····['plumedmdmodule_2ecpp_55',·['plumedMDModule.cpp',·['../plumedMDModule_8cpp.xhtml',·1,·'']]],67 ····['plumedmdmodule_2ecpp_55',·['plumedMDModule.cpp',·['../plumedMDModule_8cpp.xhtml',·1,·'']]],
68 ····['plumedmdmodule_2eh_56',·['plumedMDModule.h',·['../plumedMDModule_8h.xhtml',·1,·'']]],68 ····['plumedmdmodule_2eh_56',·['plumedMDModule.h',·['../plumedMDModule_8h.xhtml',·1,·'']]],
69 ····['plumedmdmodule_5fstub_2ecpp_57',·['plumedMDModule_stub.cpp',·['../plumedMDModule__stub_8cpp.xhtml',·1,·'']]],69 ····['plumedmdmodule_5fstub_2ecpp_57',·['plumedMDModule_stub.cpp',·['../plumedMDModule__stub_8cpp.xhtml',·1,·'']]],
70 ····['plumedoptions_2ecpp_58',·['plumedoptions.cpp',·['../tests_2plumedOptions_8cpp.xhtml',·1,·'(Global·Namespace)'],70 ····['plumedoptions_2ecpp_58',·['plumedoptions.cpp',·['../plumedOptions_8cpp.xhtml',·1,·'(Global·Namespace)'],
71 ········['../plumedOptions_8cpp.xhtml',·1,·'(Global·Namespace)']71 ········['../tests_2plumedOptions_8cpp.xhtml',·1,·'(Global·Namespace)']
72 ····]],72 ····]],
73 ····['plumedoptions_2eh_59',·['plumedOptions.h',·['../plumedOptions_8h.xhtml',·1,·'']]],73 ····['plumedoptions_2eh_59',·['plumedOptions.h',·['../plumedOptions_8h.xhtml',·1,·'']]],
74 ····['pmalloc_2ecpp_60',·['pmalloc.cpp',·['../pmalloc_8cpp.xhtml',·1,·'']]],74 ····['pmalloc_2ecpp_60',·['pmalloc.cpp',·['../pmalloc_8cpp.xhtml',·1,·'']]],
75 ····['pmalloc_2eh_61',·['pmalloc.h',·['../pmalloc_8h.xhtml',·1,·'']]],75 ····['pmalloc_2eh_61',·['pmalloc.h',·['../pmalloc_8h.xhtml',·1,·'']]],
76 ····['pmalloc_5fhip_2ecpp_62',·['pmalloc_hip.cpp',·['../pmalloc__hip_8cpp.xhtml',·1,·'']]],76 ····['pmalloc_5fhip_2ecpp_62',·['pmalloc_hip.cpp',·['../pmalloc__hip_8cpp.xhtml',·1,·'']]],
77 ····['pmalloc_5fsycl_2ecpp_63',·['pmalloc_sycl.cpp',·['../pmalloc__sycl_8cpp.xhtml',·1,·'']]],77 ····['pmalloc_5fsycl_2ecpp_63',·['pmalloc_sycl.cpp',·['../pmalloc__sycl_8cpp.xhtml',·1,·'']]],
78 ····['pme_2ecpp_64',·['pme.cpp',·['../tests_2pme_8cpp.xhtml',·1,·'(Global·Namespace)'],78 ····['pme_2ecpp_64',·['pme.cpp',·['../tests_2pme_8cpp.xhtml',·1,·'(Global·Namespace)'],
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13 ····]],13 ····]],
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15 ····['qmmmoptions_2ecpp_7',·['qmmmoptions.cpp',·['../qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],15 ····['qmmmoptions_2ecpp_7',·['qmmmoptions.cpp',·['../qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)'],
16 ········['../tests_2qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)']16 ········['../tests_2qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)']
17 ····]],17 ····]],
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19 ····['qmmmtopologypreprocessor_2ecpp_9',·['qmmmtopologypreprocessor.cpp',·['../qmmmtopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],19 ····['qmmmtopologypreprocessor_2ecpp_9',·['qmmmtopologypreprocessor.cpp',·['../tests_2qmmmtopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'],
20 ········['../tests_2qmmmtopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']20 ········['../qmmmtopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)']
21 ····]],21 ····]],
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23 ····['qmmmtypes_2eh_11',·['qmmmtypes.h',·['../qmmmtypes_8h.xhtml',·1,·'']]],23 ····['qmmmtypes_2eh_11',·['qmmmtypes.h',·['../qmmmtypes_8h.xhtml',·1,·'']]],
24 ····['quadraticsplinetable_2ecpp_12',·['quadraticsplinetable.cpp',·['../quadraticsplinetable_8cpp.xhtml',·1,·'']]],24 ····['quadraticsplinetable_2ecpp_12',·['quadraticsplinetable.cpp',·['../quadraticsplinetable_8cpp.xhtml',·1,·'']]],
25 ····['quadraticsplinetable_2eh_13',·['quadraticsplinetable.h',·['../quadraticsplinetable_8h.xhtml',·1,·'']]]25 ····['quadraticsplinetable_2eh_13',·['quadraticsplinetable.h',·['../quadraticsplinetable_8h.xhtml',·1,·'']]]
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158 <dd><a·class="anchor"·id="_todo000227"></a>Extend·the·coverage·to·the·appending·case.·</dd>158 <dd><a·class="anchor"·id="_todo000227"></a>Extend·the·coverage·to·the·appending·case.·</dd>
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160 <dd><a·class="anchor"·id="_todo000101"></a>Add·more·tests·as·the·expanded·ensemble·implementation·gets·more·modular·(#3848).·</dd>160 <dd><a·class="anchor"·id="_todo000101"></a>Add·more·tests·as·the·expanded·ensemble·implementation·gets·more·modular·(#3848).·</dd>
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162 <dd><a·class="anchor"·id="_todo000232"></a>Extend·the·coverage·to·the·appending·case.·</dd>162 <dd><a·class="anchor"·id="_todo000232"></a>Extend·the·coverage·to·the·appending·case.·</dd>
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164 <dd><a·class="anchor"·id="_todo000061"></a>:·Check·if·errors·do·propagate·in·OpenCL·as·they·do·in·CUDA·and·whether·there·is·a·mechanism·to·"clear"·them.·</dd>164 <dd><a·class="anchor"·id="_todo000061"></a>:·Check·if·errors·do·propagate·in·OpenCL·as·they·do·in·CUDA·and·whether·there·is·a·mechanism·to·"clear"·them.·</dd>
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166 <dd><a·class="anchor"·id="_todo000015"></a>check·parameters··</dd>166 <dd><a·class="anchor"·id="_todo000015"></a>check·parameters··</dd>
167 <dt>Member·<a·class="el"·href="src_2gromacs_2listed__forces_2utilities_8h.xhtml#a02435a07d79c82f6d260d8a2dcc82b90">ftype_is_bonded_potential</a>··(int·ftype)</dt>167 <dt>Member·<a·class="el"·href="src_2gromacs_2listed__forces_2utilities_8h.xhtml#a02435a07d79c82f6d260d8a2dcc82b90">ftype_is_bonded_potential</a>··(int·ftype)</dt>
168 <dd><a·class="anchor"·id="_todo000075"></a>This·function·could·go·away·when·idef·is·not·a·big·bucket·of·everything.··</dd>168 <dd><a·class="anchor"·id="_todo000075"></a>This·function·could·go·away·when·idef·is·not·a·big·bucket·of·everything.··</dd>
169 <dt>Member·<a·class="el"·href="src_2gromacs_2listed__forces_2utilities_8h.xhtml#aba08e75fc4e249fb9ee806cf08781ff5">ftypeIsListedPotential</a>··(int·ftype)</dt>169 <dt>Member·<a·class="el"·href="src_2gromacs_2listed__forces_2utilities_8h.xhtml#aba08e75fc4e249fb9ee806cf08781ff5">ftypeIsListedPotential</a>··(int·ftype)</dt>
170 <dd><a·class="anchor"·id="_todo000074"></a>This·function·could·go·away·when·idef·is·not·a·big·bucket·of·everything.··</dd>170 <dd><a·class="anchor"·id="_todo000074"></a>This·function·could·go·away·when·idef·is·not·a·big·bucket·of·everything.··</dd>
171 <dt>Member·<a·class="el"·href="device__management__common_8cpp.xhtml#a4c6f328aacc0b724c1b5731fed2744eb">getDeviceComputeUnitFactor</a>··(const·<a·class="el"·href="structDeviceInformation.xhtml"·title="Platform-dependent·device·information.">DeviceInformation</a>·&amp;deviceInfo)</dt>171 <dt>Member·<a·class="el"·href="device__management__common_8cpp.xhtml#a4c6f328aacc0b724c1b5731fed2744eb">getDeviceComputeUnitFactor</a>··(const·<a·class="el"·href="structDeviceInformation.xhtml"·title="Platform-dependent·device·information.">DeviceInformation</a>·&amp;deviceInfo)</dt>
172 <dd><a·class="anchor"·id="_todo000060"></a>:·Handled·AMD·RDNA?·</dd>172 <dd><a·class="anchor"·id="_todo000060"></a>:·Handled·AMD·RDNA?·</dd>
Offset 477, 15 lines modifiedOffset 477, 15 lines modified
477 <dd><p·class="startdd"><a·class="anchor"·id="_todo000270"></a>Eventually·t_trxframe·should·be·replaced·by·a·class·such·as·this.·Currently·we·need·to·introduce·BoxMatrix·so·that·we·can·have·a·normal·C++·getter·that·returns·the·contents·of·a·box·matrix,·since·you·cannot·use·a·real[DIM][DIM]·as·a·function·return·type.</p>477 <dd><p·class="startdd"><a·class="anchor"·id="_todo000270"></a>Eventually·t_trxframe·should·be·replaced·by·a·class·such·as·this.·Currently·we·need·to·introduce·BoxMatrix·so·that·we·can·have·a·normal·C++·getter·that·returns·the·contents·of·a·box·matrix,·since·you·cannot·use·a·real[DIM][DIM]·as·a·function·return·type.</p>
478 <p·class="enddd"><a·class="anchor"·id="_todo000271"></a>Consider·a·std::optional·work-alike·type·for·expressing·that·a·field·may·or·may·not·have·content.··</p>478 <p·class="enddd"><a·class="anchor"·id="_todo000271"></a>Consider·a·std::optional·work-alike·type·for·expressing·that·a·field·may·or·may·not·have·content.··</p>
479 </dd>479 </dd>
480 <dt>Struct·<a·class="el"·href="structgmx__hw__opt__t.xhtml">gmx_hw_opt_t</a>··</dt>480 <dt>Struct·<a·class="el"·href="structgmx__hw__opt__t.xhtml">gmx_hw_opt_t</a>··</dt>
481 <dd><a·class="anchor"·id="_todo000065"></a>During·mdrunner(),·if·the·user·has·left·any·of·these·values·at·their·defaults·(which·tends·to·mean·"choose·automatically"),·then·those·values·are·over-written·with·the·result·of·such·automation.·This·creates·problems·for·the·subsequent·code·in·knowing·what·was·done,·why,·and·reporting·correctly·to·the·user.·Find·a·way·to·improve·this.··</dd>481 <dd><a·class="anchor"·id="_todo000065"></a>During·mdrunner(),·if·the·user·has·left·any·of·these·values·at·their·defaults·(which·tends·to·mean·"choose·automatically"),·then·those·values·are·over-written·with·the·result·of·such·automation.·This·creates·problems·for·the·subsequent·code·in·knowing·what·was·done,·why,·and·reporting·correctly·to·the·user.·Find·a·way·to·improve·this.··</dd>
482 <dt>Struct·<a·class="el"·href="structgmx__multisim__t.xhtml">gmx_multisim_t</a>··</dt>482 <dt>Struct·<a·class="el"·href="structgmx__multisim__t.xhtml">gmx_multisim_t</a>··</dt>
483 <dd><a·class="anchor"·id="_todo000152"></a>Change·this·to·class··</dd>483 <dd><a·class="anchor"·id="_todo000152"></a>Change·this·to·class··</dd>
484 <dt>Member·<a·class="el"·href="pme_8cpp.xhtml#a39e800d9a258e0c8a553fa7b71e10dcf">gmx_pme_init</a>··(const·t_commrec·*cr,·const·<a·class="el"·href="structNumPmeDomains.xhtml"·title="Struct·for·passing·around·the·number·of·PME·domains.">NumPmeDomains</a>·&amp;numPmeDomains,·const·t_inputrec·*ir,·const·matrix·box,·real·haloExtentForAtomDisplacement,·gmx_bool·bFreeEnergy_q,·gmx_bool·bFreeEnergy_lj,·gmx_bool·bReproducible,·real·ewaldcoeff_q,·real·ewaldcoeff_lj,·int·nthread,·PmeRunMode·runMode,·<a·class="el"·href="structPmeGpu.xhtml"·title="The·main·PME·GPU·host·structure,·included·in·the·PME·CPU·structure·by·pointer.">PmeGpu</a>·*pmeGpu,·const·DeviceContext·*deviceContext,·const·<a·class="el"·href="classDeviceStream.xhtml"·title="Declaration·of·platform-agnostic·device·stream/queue.">DeviceStream</a>·*deviceStream,·const·<a·class="el"·href="classPmeGpuProgram.xhtml"·title="Stores·PME·data·derived·from·the·GPU·context·or·devices.">PmeGpuProgram</a>·*pmeGpuProgram,·const·<a·class="el"·href="classgmx_1_1MDLogger.xhtml"·title="Declares·a·logging·interface.">gmx::MDLogger</a>·&amp;mdlog,·std::shared_ptr&lt;·PmeGridsStorage·&gt;·pmeGridsStoragePtr)</dt>484 <dt>Member·<a·class="el"·href="pme_8h.xhtml#a39e800d9a258e0c8a553fa7b71e10dcf">gmx_pme_init</a>··(const·t_commrec·*cr,·const·<a·class="el"·href="structNumPmeDomains.xhtml"·title="Struct·for·passing·around·the·number·of·PME·domains.">NumPmeDomains</a>·&amp;numPmeDomains,·const·t_inputrec·*ir,·const·matrix·box,·real·haloExtentForAtomDisplacement,·gmx_bool·bFreeEnergy_q,·gmx_bool·bFreeEnergy_lj,·gmx_bool·bReproducible,·real·ewaldcoeff_q,·real·ewaldcoeff_lj,·int·nthread,·PmeRunMode·runMode,·<a·class="el"·href="structPmeGpu.xhtml"·title="The·main·PME·GPU·host·structure,·included·in·the·PME·CPU·structure·by·pointer.">PmeGpu</a>·*pmeGpu,·const·DeviceContext·*deviceContext,·const·<a·class="el"·href="classDeviceStream.xhtml"·title="Declaration·of·platform-agnostic·device·stream/queue.">DeviceStream</a>·*deviceStream,·const·<a·class="el"·href="classPmeGpuProgram.xhtml"·title="Stores·PME·data·derived·from·the·GPU·context·or·devices.">PmeGpuProgram</a>·*pmeGpuProgram,·const·<a·class="el"·href="classgmx_1_1MDLogger.xhtml"·title="Declares·a·logging·interface.">gmx::MDLogger</a>·&amp;mdlog,·std::shared_ptr&lt;·PmeGridsStorage·&gt;·pmeGridsStoragePtr)</dt>
485 <dd><a·class="anchor"·id="_todo000024"></a>We·should·evolve·something·like·a·<code>GpuManager</code>·that·holds·<code>DeviceInformation*</code>·and·<code>PmeGpuProgram*</code>·and·perhaps·other·related·things·whose·lifetime·can/should·exceed·that·of·a·task·(or·perhaps·task·manager).·See·Issue·#2522.··</dd>485 <dd><a·class="anchor"·id="_todo000024"></a>We·should·evolve·something·like·a·<code>GpuManager</code>·that·holds·<code>DeviceInformation*</code>·and·<code>PmeGpuProgram*</code>·and·perhaps·other·related·things·whose·lifetime·can/should·exceed·that·of·a·task·(or·perhaps·task·manager).·See·Issue·#2522.··</dd>
486 <dt>Member·<a·class="el"·href="group__module__utility.xhtml#ga33e34477bae2bbb86c4d9af1823e3fd0">GMX_UNUSED_VALUE</a>··(value)</dt>486 <dt>Member·<a·class="el"·href="group__module__utility.xhtml#ga33e34477bae2bbb86c4d9af1823e3fd0">GMX_UNUSED_VALUE</a>··(value)</dt>
487 <dd><a·class="anchor"·id="_todo000275"></a>Deprecated·-·use·gmx_unused··</dd>487 <dd><a·class="anchor"·id="_todo000275"></a>Deprecated·-·use·gmx_unused··</dd>
488 <dt>File·<a·class="el"·href="programs_2mdrun_2tests_2grompp_8cpp.xhtml">grompp.cpp</a>··</dt>488 <dt>File·<a·class="el"·href="programs_2mdrun_2tests_2grompp_8cpp.xhtml">grompp.cpp</a>··</dt>
489 <dd><a·class="anchor"·id="_todo000233"></a>Refactor·SimulationRunner·to·split·off·SimulationPreparer,·so·that·integration·tests·of·grompp·can·stand·apart·from·tests·of·mdrun.·</dd>489 <dd><a·class="anchor"·id="_todo000233"></a>Refactor·SimulationRunner·to·split·off·SimulationPreparer,·so·that·integration·tests·of·grompp·can·stand·apart·from·tests·of·mdrun.·</dd>
490 <dt>File·<a·class="el"·href="haloexchange__mpi_8cpp.xhtml">haloexchange_mpi.cpp</a>··</dt>490 <dt>File·<a·class="el"·href="haloexchange__mpi_8cpp.xhtml">haloexchange_mpi.cpp</a>··</dt>
491 <dd><a·class="anchor"·id="_todo000020"></a>Add·3D·case·</dd>491 <dd><a·class="anchor"·id="_todo000020"></a>Add·3D·case·</dd>
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565 <dd><a·class="anchor"·id="_todo000032"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·</dd>565 <dd><a·class="anchor"·id="_todo000032"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·</dd>
566 <dt>File·<a·class="el"·href="pme__gpu__staging_8h.xhtml">pme_gpu_staging.h</a>··</dt>566 <dt>File·<a·class="el"·href="pme__gpu__staging_8h.xhtml">pme_gpu_staging.h</a>··</dt>
567 <dd><a·class="anchor"·id="_todo000033"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·bringing·the·function·names·up·to·guidelines·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·&ndash;·refining·GPU·notation·application·(#2053)·&ndash;·renaming·coefficients·to·charges·(?)·</dd>567 <dd><a·class="anchor"·id="_todo000033"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·bringing·the·function·names·up·to·guidelines·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·&ndash;·refining·GPU·notation·application·(#2053)·&ndash;·renaming·coefficients·to·charges·(?)·</dd>
568 <dt>Member·<a·class="el"·href="pme_8h.xhtml#a9faddde52f5a636410141f52cc95d3e1">pme_gpu_task_enabled</a>··(const·gmx_pme_t·*pme)</dt>568 <dt>Member·<a·class="el"·href="pme_8h.xhtml#a9faddde52f5a636410141f52cc95d3e1">pme_gpu_task_enabled</a>··(const·gmx_pme_t·*pme)</dt>
569 <dd><a·class="anchor"·id="_todo000026"></a>This·is·a·rather·static·data·that·should·be·managed·by·the·hardware·assignment·manager.·For·now,·it·is·synonymous·with·the·active·PME·codepath·(in·the·absence·of·dynamic·switching).·</dd>569 <dd><a·class="anchor"·id="_todo000026"></a>This·is·a·rather·static·data·that·should·be·managed·by·the·hardware·assignment·manager.·For·now,·it·is·synonymous·with·the·active·PME·codepath·(in·the·absence·of·dynamic·switching).·</dd>
570 <dt>File·<a·class="el"·href="pme__gpu__types__host_8h.xhtml">pme_gpu_types_host.h</a>··</dt>570 <dt>File·<a·class="el"·href="pme__gpu__types__host_8h.xhtml">pme_gpu_types_host.h</a>··</dt>
571 <dd><a·class="anchor"·id="_todo000034"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·bringing·the·function·names·up·to·guidelines·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·&ndash;·refining·GPU·notation·application·(#2053)·&ndash;·renaming·coefficients·to·charges·(?)·</dd>571 <dd><a·class="anchor"·id="_todo000034"></a>Some·renaming/refactoring,·which·does·not·impair·the·performance:·&ndash;·bringing·the·function·names·up·to·guidelines·&ndash;·<a·class="el"·href="structPmeGpuSettings.xhtml"·title="The·PME·GPU·settings·structure,·included·in·the·main·PME·GPU·structure·by·value.">PmeGpuSettings</a>·-&gt;·PmeGpuTasks·&ndash;·refining·GPU·notation·application·(#2053)·&ndash;·renaming·coefficients·to·charges·(?)·</dd>
572 <dt>Member·<a·class="el"·href="pme_8cpp.xhtml#a9cfbe9fa691aabaf1a9e10fa06858c96">pme_run_mode</a>··(const·gmx_pme_t·*pme)</dt>572 <dt>Member·<a·class="el"·href="pme_8h.xhtml#a9cfbe9fa691aabaf1a9e10fa06858c96">pme_run_mode</a>··(const·gmx_pme_t·*pme)</dt>
573 <dd><a·class="anchor"·id="_todo000025"></a>This·is·a·rather·static·data·that·should·be·managed·by·the·higher·level·task·scheduler.·</dd>573 <dd><a·class="anchor"·id="_todo000025"></a>This·is·a·rather·static·data·that·should·be·managed·by·the·higher·level·task·scheduler.·</dd>
574 <dt>Member·<a·class="el"·href="structPmeGpu.xhtml#a592a545094c1ba0847e5e5223c981cc9">PmeGpu::kernelParams</a>··</dt>574 <dt>Member·<a·class="el"·href="structPmeGpu.xhtml#a592a545094c1ba0847e5e5223c981cc9">PmeGpu::kernelParams</a>··</dt>
575 <dd><a·class="anchor"·id="_todo000036"></a>Test·whether·this·should·be·copied·to·the·constant·GPU·memory·once·for·each·computation·(or·even·less·often·with·no·box·updates)·instead·of·being·an·argument.··</dd>575 <dd><a·class="anchor"·id="_todo000036"></a>Test·whether·this·should·be·copied·to·the·constant·GPU·memory·once·for·each·computation·(or·even·less·often·with·no·box·updates)·instead·of·being·an·argument.··</dd>
576 <dt>Struct·<a·class="el"·href="structPmeGpuProgramImpl.xhtml">PmeGpuProgramImpl</a>··</dt>576 <dt>Struct·<a·class="el"·href="structPmeGpuProgramImpl.xhtml">PmeGpuProgramImpl</a>··</dt>
577 <dd><a·class="anchor"·id="_todo000031"></a>In·future·if·we·would·need·to·react·to·either·user·input·or·auto-tuning·to·compile·different·kernels,·then·we·might·wish·to·revisit·the·number·of·kernels·we·pre-compile,·and/or·the·management·of·their·lifetime.·</dd>577 <dd><a·class="anchor"·id="_todo000031"></a>In·future·if·we·would·need·to·react·to·either·user·input·or·auto-tuning·to·compile·different·kernels,·then·we·might·wish·to·revisit·the·number·of·kernels·we·pre-compile,·and/or·the·management·of·their·lifetime.·</dd>
578 <dt>Member·<a·class="el"·href="pme_8h.xhtml#adc082ed1af9a4868af13352373ed3791">PmeRunMode</a>··</dt>578 <dt>Member·<a·class="el"·href="pme_8h.xhtml#adc082ed1af9a4868af13352373ed3791">PmeRunMode</a>··</dt>
579 <dd><a·class="anchor"·id="_todo000023"></a>:·make·this·enum·class·with·gmx_pme_t·C++·refactoring··</dd>579 <dd><a·class="anchor"·id="_todo000023"></a>:·make·this·enum·class·with·gmx_pme_t·C++·refactoring··</dd>
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568 ····['outputadaptercontainer_219',·['outputadaptercontainer',·['../classgmx_1_1OutputAdapterContainer.xhtml',·1,·'gmx::OutputAdapterContainer'],568 ····['outputadaptercontainer_219',·['outputadaptercontainer',·['../classgmx_1_1OutputAdapterContainer.xhtml',·1,·'gmx::OutputAdapterContainer'],
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583 ····['outputparametergeneratorfunction_226',·['OutputParameterGeneratorFunction',·['../namespacegmx_1_1test.xhtml#a4d3f74cfb6fe86190ac6944586d98cc2',·1,·'gmx::test']]],583 ····['outputparametergeneratorfunction_226',·['OutputParameterGeneratorFunction',·['../namespacegmx_1_1test.xhtml#a4d3f74cfb6fe86190ac6944586d98cc2',·1,·'gmx::test']]],
584 ····['outputparameters_227',·['outputParameters',·['../namespacegmx_1_1test.xhtml#af69e1aa96a402756bc085f8c0e4a6e3e',·1,·'gmx::test']]],584 ····['outputparameters_227',·['outputParameters',·['../namespacegmx_1_1test.xhtml#af69e1aa96a402756bc085f8c0e4a6e3e',·1,·'gmx::test']]],
585 ····['outputprovider_228',·['outputprovider',·['../classgmx_1_1IMDModule.xhtml#a489c0cac9c871a0f1cc0a95f7a52bc0b',·1,·'gmx::IMDModule::outputProvider()'], 
586 ········['../classgmx_1_1RestraintMDModule.xhtml#afe126d08665a6d3ccd32c3f569476d52',·1,·'gmx::RestraintMDModule::outputProvider()'],585 ····['outputprovider_228',·['outputprovider',·['../classgmx_1_1RestraintMDModule.xhtml#afe126d08665a6d3ccd32c3f569476d52',·1,·'gmx::RestraintMDModule::outputProvider()'],
587 ········['../classgmx_1_1MDModules.xhtml#a72cb582ed6d59671da41c5f022338668',·1,·'gmx::MDModules::outputProvider()']586 ········['../classgmx_1_1MDModules.xhtml#a72cb582ed6d59671da41c5f022338668',·1,·'gmx::MDModules::outputProvider()'],
 587 ········['../classgmx_1_1IMDModule.xhtml#a489c0cac9c871a0f1cc0a95f7a52bc0b',·1,·'gmx::IMDModule::outputProvider()']
588 ····]],588 ····]],
589 ····['outputrequirementoptiondirector_229',·['OutputRequirementOptionDirector',·['../classgmx_1_1OutputRequirementOptionDirector.xhtml',·1,·'gmx']]],589 ····['outputrequirementoptiondirector_229',·['OutputRequirementOptionDirector',·['../classgmx_1_1OutputRequirementOptionDirector.xhtml',·1,·'gmx']]],
590 ····['outputrequirements_230',·['OutputRequirements',·['../structgmx_1_1OutputRequirements.xhtml',·1,·'gmx']]],590 ····['outputrequirements_230',·['OutputRequirements',·['../structgmx_1_1OutputRequirements.xhtml',·1,·'gmx']]],
591 ····['outputselector_231',·['outputselector',·['../classgmx_1_1OutputSelector.xhtml',·1,·'gmx::OutputSelector'],591 ····['outputselector_231',·['outputselector',·['../classgmx_1_1OutputSelector.xhtml',·1,·'gmx::OutputSelector'],
592 ········['../classgmx_1_1OutputSelector.xhtml#af79a9c1cb189a56a816f564b2ab506d6',·1,·'gmx::OutputSelector::OutputSelector(OutputSelector·&amp;&amp;old)·noexcept=default'],592 ········['../classgmx_1_1OutputSelector.xhtml#af79a9c1cb189a56a816f564b2ab506d6',·1,·'gmx::OutputSelector::OutputSelector(OutputSelector·&amp;&amp;old)·noexcept=default'],
593 ········['../classgmx_1_1OutputSelector.xhtml#adfdcfbbeb5cbf85a8ec3cd2c0c92ab69',·1,·'gmx::OutputSelector::OutputSelector(const·Selection·&amp;sel)']593 ········['../classgmx_1_1OutputSelector.xhtml#adfdcfbbeb5cbf85a8ec3cd2c0c92ab69',·1,·'gmx::OutputSelector::OutputSelector(const·Selection·&amp;sel)']
594 ····]],594 ····]],
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Offset 163, 16 lines modifiedOffset 163, 16 lines modified
163 ····]],163 ····]],
164 ····['referencetemperaturecallback_98',·['ReferenceTemperatureCallback',·['../group__module__modularsimulator.xhtml#ga00d43387a13cded843d155f43add55f2',·1,·'gmx']]],164 ····['referencetemperaturecallback_98',·['ReferenceTemperatureCallback',·['../group__module__modularsimulator.xhtml#ga00d43387a13cded843d155f43add55f2',·1,·'gmx']]],
165 ····['refid_99',·['refid',·['../structgmx__ana__indexmap__t.xhtml#a36f6687375c680532b55396ac1d2dc5e',·1,·'gmx_ana_indexmap_t::refid'],165 ····['refid_99',·['refid',·['../structgmx__ana__indexmap__t.xhtml#a36f6687375c680532b55396ac1d2dc5e',·1,·'gmx_ana_indexmap_t::refid'],
166 ········['../classgmx_1_1SelectionPosition.xhtml#a927c30a6001be41a8af890006c40bac0',·1,·'gmx::SelectionPosition::refId()']166 ········['../classgmx_1_1SelectionPosition.xhtml#a927c30a6001be41a8af890006c40bac0',·1,·'gmx::SelectionPosition::refId()']
167 ····]],167 ····]],
168 ····['refids_100',·['refIds',·['../classgmx_1_1Selection.xhtml#a14558d886a11842e39a1f93dfd1db358',·1,·'gmx::Selection']]],168 ····['refids_100',·['refIds',·['../classgmx_1_1Selection.xhtml#a14558d886a11842e39a1f93dfd1db358',·1,·'gmx::Selection']]],
169 ····['refindex_101',·['refIndex',·['../classgmx_1_1AnalysisNeighborhoodPair.xhtml#a713650494eafbd30a66902c2971f16fe',·1,·'gmx::AnalysisNeighborhoodPair']]],169 ····['refindex_101',·['refIndex',·['../classgmx_1_1AnalysisNeighborhoodPair.xhtml#a713650494eafbd30a66902c2971f16fe',·1,·'gmx::AnalysisNeighborhoodPair']]],
170 ····['register_2ecpp_102',·['register.cpp',·['../tests_2register_8cpp.xhtml',·1,·'(Global·Namespace)'],170 ····['register_2ecpp_102',·['register.cpp',·['../frameconverters_2register_8cpp.xhtml',·1,·'(Global·Namespace)'],
171 ········['../frameconverters_2register_8cpp.xhtml',·1,·'(Global·Namespace)']171 ········['../tests_2register_8cpp.xhtml',·1,·'(Global·Namespace)']
172 ····]],172 ····]],
173 ····['register_2eh_103',·['register.h',·['../register_8h.xhtml',·1,·'']]],173 ····['register_2eh_103',·['register.h',·['../register_8h.xhtml',·1,·'']]],
174 ····['register_5fexternal_5fpull_5fpotential_104',·['register_external_pull_potential',·['../pull_8h.xhtml#a86dbe05b3e003570d0fa27706bebe5df',·1,·'pull.cpp']]],174 ····['register_5fexternal_5fpull_5fpotential_104',·['register_external_pull_potential',·['../pull_8h.xhtml#a86dbe05b3e003570d0fa27706bebe5df',·1,·'pull.cpp']]],
175 ····['registeranalysisdataset_105',·['registerAnalysisDataset',·['../classgmx_1_1TrajectoryAnalysisModule.xhtml#a86b3b5cd87518e988e8b5452b39a3ad1',·1,·'gmx::TrajectoryAnalysisModule']]],175 ····['registeranalysisdataset_105',·['registerAnalysisDataset',·['../classgmx_1_1TrajectoryAnalysisModule.xhtml#a86b3b5cd87518e988e8b5452b39a3ad1',·1,·'gmx::TrajectoryAnalysisModule']]],
176 ····['registerawhwithpull_106',·['registerAwhWithPull',·['../classgmx_1_1Awh.xhtml#af8957a0084804002508feb702f0e924a',·1,·'gmx::Awh']]],176 ····['registerawhwithpull_106',·['registerAwhWithPull',·['../classgmx_1_1Awh.xhtml#af8957a0084804002508feb702f0e924a',·1,·'gmx::Awh']]],
177 ····['registerbasicdataset_107',·['registerBasicDataset',·['../classgmx_1_1TrajectoryAnalysisModule.xhtml#ad946d2af4c8e284ef349f2cd816495bb',·1,·'gmx::TrajectoryAnalysisModule']]],177 ····['registerbasicdataset_107',·['registerBasicDataset',·['../classgmx_1_1TrajectoryAnalysisModule.xhtml#ad946d2af4c8e284ef349f2cd816495bb',·1,·'gmx::TrajectoryAnalysisModule']]],
178 ····['registerdomdeccallback_108',·['registerDomDecCallback',·['../group__module__modularsimulator.xhtml#gafbccf39923b2a69b05bc61d185671e47',·1,·'gmx::IDomDecHelperClient']]],178 ····['registerdomdeccallback_108',·['registerDomDecCallback',·['../group__module__modularsimulator.xhtml#gafbccf39923b2a69b05bc61d185671e47',·1,·'gmx::IDomDecHelperClient']]],
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Offset 595, 22 lines modifiedOffset 595, 22 lines modified
595 ····['simd_20intrinsics_20interface_20simd_392',·['SIMD·intrinsics·interface·(simd)',·['../group__module__simd.xhtml',·1,·'']]],595 ····['simd_20intrinsics_20interface_20simd_392',·['SIMD·intrinsics·interface·(simd)',·['../group__module__simd.xhtml',·1,·'']]],
596 ····['simd_20math_20library_393',·['The·SIMD·math·library',·['../page_simd.xhtml#autotoc_md70',·1,·'']]],596 ····['simd_20math_20library_393',·['The·SIMD·math·library',·['../page_simd.xhtml#autotoc_md70',·1,·'']]],
597 ····['simd_20module_394',·['Design·of·the·GROMACS·SIMD·module',·['../page_simd.xhtml#autotoc_md57',·1,·'']]],597 ····['simd_20module_394',·['Design·of·the·GROMACS·SIMD·module',·['../page_simd.xhtml#autotoc_md57',·1,·'']]],
598 ····['simd_20preprocessor_20macros_395',·['Predefined·SIMD·preprocessor·macros',·['../page_simd.xhtml#autotoc_md66',·1,·'']]],598 ····['simd_20preprocessor_20macros_395',·['Predefined·SIMD·preprocessor·macros',·['../page_simd.xhtml#autotoc_md66',·1,·'']]],
599 ····['simd_2eh_396',·['simd.h',·['../include_2gromacs_2simd_2simd_8h.xhtml',·1,·'']]],599 ····['simd_2eh_396',·['simd.h',·['../include_2gromacs_2simd_2simd_8h.xhtml',·1,·'']]],
600 ····['simd4_20implementation_397',·['SIMD4·implementation',·['../page_simd.xhtml#autotoc_md64',·1,·'']]],600 ····['simd4_20implementation_397',·['SIMD4·implementation',·['../page_simd.xhtml#autotoc_md64',·1,·'']]],
601 ····['simd4bool_398',·['Simd4Bool',·['../namespacegmx.xhtml#acb6a84be080be397c2c09cda9f315037',·1,·'gmx']]],601 ····['simd4bool_398',·['Simd4Bool',·['../namespacegmx.xhtml#acb6a84be080be397c2c09cda9f315037',·1,·'gmx']]],
602 ····['simd4dbool_399',·['simd4dbool',·['../classgmx_1_1Simd4DBool.xhtml',·1,·'gmx::Simd4DBool'], 
603 ········['../classgmx_1_1Simd4DBool.xhtml#a428de6b27a42a06dd0fd632660b3ae9d',·1,·'gmx::Simd4DBool::Simd4DBool()']602 ····['simd4dbool_399',·['simd4dbool',·['../classgmx_1_1Simd4DBool.xhtml#a428de6b27a42a06dd0fd632660b3ae9d',·1,·'gmx::Simd4DBool::Simd4DBool()'],
 603 ········['../classgmx_1_1Simd4DBool.xhtml',·1,·'gmx::Simd4DBool']
604 ····]],604 ····]],
605 ····['simd4double_400',·['simd4double',·['../classgmx_1_1Simd4Double.xhtml',·1,·'gmx::Simd4Double'], 
606 ········['../classgmx_1_1Simd4Double.xhtml#a92931f93554548894cd5daa60af49525',·1,·'gmx::Simd4Double::Simd4Double()']605 ····['simd4double_400',·['simd4double',·['../classgmx_1_1Simd4Double.xhtml#a92931f93554548894cd5daa60af49525',·1,·'gmx::Simd4Double::Simd4Double()'],
 606 ········['../classgmx_1_1Simd4Double.xhtml',·1,·'gmx::Simd4Double']
607 ····]],607 ····]],
608 ····['simd4fbool_401',·['simd4fbool',·['../classgmx_1_1Simd4FBool.xhtml',·1,·'gmx::Simd4FBool'], 
609 ········['../classgmx_1_1Simd4FBool.xhtml#ad64754cbb774d9cab1ed08c49a6e28bc',·1,·'gmx::Simd4FBool::Simd4FBool()']608 ····['simd4fbool_401',·['simd4fbool',·['../classgmx_1_1Simd4FBool.xhtml#ad64754cbb774d9cab1ed08c49a6e28bc',·1,·'gmx::Simd4FBool::Simd4FBool()'],
 609 ········['../classgmx_1_1Simd4FBool.xhtml',·1,·'gmx::Simd4FBool']
610 ····]],610 ····]],
611 ····['simd4float_402',·['simd4float',·['../classgmx_1_1Simd4Float.xhtml#a4d61d22b9955c0f6fa78804562704cbe',·1,·'gmx::Simd4Float::Simd4Float()'],611 ····['simd4float_402',·['simd4float',·['../classgmx_1_1Simd4Float.xhtml#a4d61d22b9955c0f6fa78804562704cbe',·1,·'gmx::Simd4Float::Simd4Float()'],
612 ········['../classgmx_1_1Simd4Float.xhtml',·1,·'gmx::Simd4Float']612 ········['../classgmx_1_1Simd4Float.xhtml',·1,·'gmx::Simd4Float']
613 ····]],613 ····]],
614 ····['simd4n_20implementation_403',·['SIMD4N·implementation',·['../page_simd.xhtml#autotoc_md65',·1,·'']]],614 ····['simd4n_20implementation_403',·['SIMD4N·implementation',·['../page_simd.xhtml#autotoc_md65',·1,·'']]],
615 ····['simd4real_404',·['Simd4Real',·['../namespacegmx.xhtml#a37686b0c2ec48a361d6c4473c1fdb70c',·1,·'gmx']]],615 ····['simd4real_404',·['Simd4Real',·['../namespacegmx.xhtml#a37686b0c2ec48a361d6c4473c1fdb70c',·1,·'gmx']]],
616 ····['simd4setzerod_405',·['simd4SetZeroD',·['../group__module__simd.xhtml#gac88aa19e4c856c2333bf814c3521c488',·1,·'gmx']]],616 ····['simd4setzerod_405',·['simd4SetZeroD',·['../group__module__simd.xhtml#gac88aa19e4c856c2333bf814c3521c488',·1,·'gmx']]],
Offset 618, 16 lines modifiedOffset 618, 16 lines modified
618 ····['simd_5fmath_2eh_407',·['simd_math.h',·['../simd__math_8h.xhtml',·1,·'']]],618 ····['simd_5fmath_2eh_407',·['simd_math.h',·['../simd__math_8h.xhtml',·1,·'']]],
619 ····['simd_5fmemory_2eh_408',·['simd_memory.h',·['../simd__memory_8h.xhtml',·1,·'']]],619 ····['simd_5fmemory_2eh_408',·['simd_memory.h',·['../simd__memory_8h.xhtml',·1,·'']]],
620 ····['simd_5fsupport_2eh_409',·['simd_support.h',·['../simd__support_8h.xhtml',·1,·'']]],620 ····['simd_5fsupport_2eh_409',·['simd_support.h',·['../simd__support_8h.xhtml',·1,·'']]],
621 ····['simd_5fwidth_410',·['simd_width',·['../namespacegmx.xhtml#ad2defc5df98b53733b2d299c76788b05',·1,·'gmx']]],621 ····['simd_5fwidth_410',·['simd_width',·['../namespacegmx.xhtml#ad2defc5df98b53733b2d299c76788b05',·1,·'gmx']]],
622 ····['simdbitmask_411',·['SimdBitMask',·['../namespacegmx.xhtml#afb42c13ecb6e9bac5d3b89e89143257f',·1,·'gmx']]],622 ····['simdbitmask_411',·['SimdBitMask',·['../namespacegmx.xhtml#afb42c13ecb6e9bac5d3b89e89143257f',·1,·'gmx']]],
623 ····['simdbool_412',·['SimdBool',·['../namespacegmx.xhtml#a307172d59a1a7c9ed87bc2cb4df83efa',·1,·'gmx']]],623 ····['simdbool_412',·['SimdBool',·['../namespacegmx.xhtml#a307172d59a1a7c9ed87bc2cb4df83efa',·1,·'gmx']]],
624 ····['simdcheck_413',·['simdCheck',·['../namespacegmx.xhtml#a3dfaae36144016a6b9ef7524dfbbb815',·1,·'gmx']]],624 ····['simdcheck_413',·['simdCheck',·['../namespacegmx.xhtml#a3dfaae36144016a6b9ef7524dfbbb815',·1,·'gmx']]],
625 ····['simddbool_414',·['simddbool',·['../classgmx_1_1SimdDBool.xhtml',·1,·'gmx::SimdDBool'], 
626 ········['../classgmx_1_1SimdDBool.xhtml#ad4d8f87a8e48ad39d6600c271dc37a02',·1,·'gmx::SimdDBool::SimdDBool()']625 ····['simddbool_414',·['simddbool',·['../classgmx_1_1SimdDBool.xhtml#ad4d8f87a8e48ad39d6600c271dc37a02',·1,·'gmx::SimdDBool::SimdDBool()'],
 626 ········['../classgmx_1_1SimdDBool.xhtml',·1,·'gmx::SimdDBool']
627 ····]],627 ····]],
628 ····['simddibool_415',·['simddibool',·['../classgmx_1_1SimdDIBool.xhtml',·1,·'gmx::SimdDIBool'],628 ····['simddibool_415',·['simddibool',·['../classgmx_1_1SimdDIBool.xhtml',·1,·'gmx::SimdDIBool'],
629 ········['../classgmx_1_1SimdDIBool.xhtml#a9b76cf7d82509f3f7adeac5d7f1b1477',·1,·'gmx::SimdDIBool::SimdDIBool()']629 ········['../classgmx_1_1SimdDIBool.xhtml#a9b76cf7d82509f3f7adeac5d7f1b1477',·1,·'gmx::SimdDIBool::SimdDIBool()']
630 ····]],630 ····]],
631 ····['simddint32_416',·['simddint32',·['../classgmx_1_1SimdDInt32.xhtml',·1,·'gmx::SimdDInt32'],631 ····['simddint32_416',·['simddint32',·['../classgmx_1_1SimdDInt32.xhtml',·1,·'gmx::SimdDInt32'],
632 ········['../classgmx_1_1SimdDInt32.xhtml#a4107f8bf681a5cfe0abd34bffd5d952b',·1,·'gmx::SimdDInt32::SimdDInt32()']632 ········['../classgmx_1_1SimdDInt32.xhtml#a4107f8bf681a5cfe0abd34bffd5d952b',·1,·'gmx::SimdDInt32::SimdDInt32()']
633 ····]],633 ····]],
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Offset 22, 30 lines modifiedOffset 22, 30 lines modified
22 ····['uniquedeviceid_14',·['uniqueDeviceId',·['../device__management_8h.xhtml#ab7595ed839026b4d41d8eb72701a80eb',·1,·'device_management_common.cpp']]],22 ····['uniquedeviceid_14',·['uniqueDeviceId',·['../device__management_8h.xhtml#ab7595ed839026b4d41d8eb72701a80eb',·1,·'device_management_common.cpp']]],
23 ····['unit_15',·['unit',·['../classgmx_1_1EnergyTerm.xhtml#aef5ad0000c2fbbc74c57f0b5e0ddb409',·1,·'gmx::EnergyTerm']]],23 ····['unit_15',·['unit',·['../classgmx_1_1EnergyTerm.xhtml#aef5ad0000c2fbbc74c57f0b5e0ddb409',·1,·'gmx::EnergyTerm']]],
24 ····['unitcelliscompact_16',·['UnitCellIsCompact',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9ad4d785ddf0c77e7b697efd2b5ec376e1',·1,·'gmx']]],24 ····['unitcelliscompact_16',·['UnitCellIsCompact',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9ad4d785ddf0c77e7b697efd2b5ec376e1',·1,·'gmx']]],
25 ····['unitcellisrectangular_17',·['UnitCellIsRectangular',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a8e7bda81ce54b8cf90c3b856c83e7d9f',·1,·'gmx']]],25 ····['unitcellisrectangular_17',·['UnitCellIsRectangular',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a8e7bda81ce54b8cf90c3b856c83e7d9f',·1,·'gmx']]],
26 ····['unitcellistriclinic_18',·['UnitCellIsTriclinic',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a99285c8187fb87e756f127435045dc3f',·1,·'gmx']]],26 ····['unitcellistriclinic_18',·['UnitCellIsTriclinic',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a99285c8187fb87e756f127435045dc3f',·1,·'gmx']]],
27 ····['unitcelltype_19',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]],27 ····['unitcelltype_19',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]],
28 ····['unitcelltypenames_20',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]],28 ····['unitcelltypenames_20',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]],
 29 ····['unitvector_21',·['unitvector',·['../namespacegmx.xhtml#a53215047e2f488dfbf48164090c07b40',·1,·'gmx::unitVector()'],
29 ····['unitvector_21',·['unitvector',·['../classgmx_1_1BasicVector.xhtml#a2fc805de143df5ecfe38f2cb50d84e6c',·1,·'gmx::BasicVector::unitVector()'],30 ········['../classgmx_1_1BasicVector.xhtml#a2fc805de143df5ecfe38f2cb50d84e6c',·1,·'gmx::BasicVector::unitVector()']
30 ········['../namespacegmx.xhtml#a53215047e2f488dfbf48164090c07b40',·1,·'gmx::unitVector(const·VectorType·&amp;v)'] 
31 ····]],31 ····]],
32 ····['unity_22',·['Unity',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099fa82dd98f1d663acc318e6a8ec4ab69b7a',·1,·'gmx']]],32 ····['unity_22',·['Unity',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099fa82dd98f1d663acc318e6a8ec4ab69b7a',·1,·'gmx']]],
33 ····['unknown_23',·['unknown',·['../classgmx_1_1CpuInfo.xhtml#acd7ff27553f3ff9fd1037c30c21a24f1a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::CpuInfo::Unknown'],33 ····['unknown_23',·['unknown',·['../classgmx_1_1CpuInfo.xhtml#acd7ff27553f3ff9fd1037c30c21a24f1a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::CpuInfo::Unknown'],
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34 ········['../device__information_8h.xhtml#a5514710e3c78d4816da9e8d2e3cd508ca88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'Unknown:&#160;device_information.h'],35 ········['../device__information_8h.xhtml#a5514710e3c78d4816da9e8d2e3cd508ca88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'Unknown:&#160;device_information.h']
35 ········['../namespacegmx.xhtml#a20e189e3f31f5f1e8581a5cc84063453a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::Unknown'] 
36 ····]],36 ····]],
37 ····['unpackrecvbufkernel_24',·['unpackRecvBufKernel',·['../namespacegmx.xhtml#a704128fa72f8ce7dcf08d0063a166036',·1,·'gmx']]],37 ····['unpackrecvbufkernel_24',·['unpackRecvBufKernel',·['../namespacegmx.xhtml#a704128fa72f8ce7dcf08d0063a166036',·1,·'gmx']]],
38 ····['unpaddedarrayref_25',·['unpaddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#ad5b878ca7749f5b8f52e006269fbfc2f',·1,·'gmx::ArrayRefWithPadding']]],38 ····['unpaddedarrayref_25',·['unpaddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#ad5b878ca7749f5b8f52e006269fbfc2f',·1,·'gmx::ArrayRefWithPadding']]],
39 ····['unpaddedconstarrayref_26',·['unpaddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a2c3f73497c6bc71264ae1af84b6522ae',·1,·'gmx::ArrayRefWithPadding']]],39 ····['unpaddedconstarrayref_26',·['unpaddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a2c3f73497c6bc71264ae1af84b6522ae',·1,·'gmx::ArrayRefWithPadding']]],
40 ····['unset_27',·['Unset',·['../md__enums_8h.xhtml#a1df3eedfba9424ae3e518284a453d95cac9f88e098f6fe4e4e112eeb05ccb9671',·1,·'md_enums.h']]],40 ····['unset_27',·['Unset',·['../md__enums_8h.xhtml#a1df3eedfba9424ae3e518284a453d95cac9f88e098f6fe4e4e112eeb05ccb9671',·1,·'md_enums.h']]],
41 ····['unsignedchartostring_28',·['unsignedCharToString',·['../group__module__utility.xhtml#ga78b462191d8dbe81225e12d64cdd55a3',·1,·'gmx']]],41 ····['unsignedchartostring_28',·['unsignedCharToString',·['../group__module__utility.xhtml#ga78b462191d8dbe81225e12d64cdd55a3',·1,·'gmx']]],
42 ····['update_29',·['update',·['../classgmx_1_1Update.xhtml#afcb4065ad13efba2d3aa9b5225125e6f',·1,·'gmx::Update::Update()'],42 ····['update_29',·['update',·['../classgmx_1_1Update.xhtml#afcb4065ad13efba2d3aa9b5225125e6f',·1,·'gmx::Update::Update()'],
43 ········['../classgmx_1_1Update.xhtml',·1,·'gmx::Update'], 
44 ········['../classgmx_1_1IRestraintPotential.xhtml#a6bc44212f005dbc7a03acf9a76b1074d',·1,·'gmx::IRestraintPotential::update()']43 ········['../classgmx_1_1IRestraintPotential.xhtml#a6bc44212f005dbc7a03acf9a76b1074d',·1,·'gmx::IRestraintPotential::update()'],
 44 ········['../classgmx_1_1Update.xhtml',·1,·'gmx::Update']
45 ····]],45 ····]],
46 ····['update_5fconstrain_5fgpu_2eh_30',·['update_constrain_gpu.h',·['../update__constrain__gpu_8h.xhtml',·1,·'']]],46 ····['update_5fconstrain_5fgpu_2eh_30',·['update_constrain_gpu.h',·['../update__constrain__gpu_8h.xhtml',·1,·'']]],
47 ····['update_5fcoords_31',·['update_coords',·['../classgmx_1_1Update.xhtml#a07bb5e84363cbcb95a10bc97647526e9',·1,·'gmx::Update']]],47 ····['update_5fcoords_31',·['update_coords',·['../classgmx_1_1Update.xhtml#a07bb5e84363cbcb95a10bc97647526e9',·1,·'gmx::Update']]],
48 ····['update_5fdisres_5fhistory_32',·['update_disres_history',·['../disre_8h.xhtml#a80a6326aadca6d0b6f6f4753e63648e7',·1,·'disre.cpp']]],48 ····['update_5fdisres_5fhistory_32',·['update_disres_history',·['../disre_8h.xhtml#a80a6326aadca6d0b6f6f4753e63648e7',·1,·'disre.cpp']]],
49 ····['update_5ffor_5fconstraint_5fvirial_33',·['update_for_constraint_virial',·['../classgmx_1_1Update.xhtml#acbd679269aa6945d6922c029770e8a84',·1,·'gmx::Update']]],49 ····['update_5ffor_5fconstraint_5fvirial_33',·['update_for_constraint_virial',·['../classgmx_1_1Update.xhtml#acbd679269aa6945d6922c029770e8a84',·1,·'gmx::Update']]],
50 ····['update_5fsd_5fsecond_5fhalf_34',·['update_sd_second_half',·['../classgmx_1_1Update.xhtml#ab0206e61c30553bd8aa268891c466509',·1,·'gmx::Update']]],50 ····['update_5fsd_5fsecond_5fhalf_34',·['update_sd_second_half',·['../classgmx_1_1Update.xhtml#ab0206e61c30553bd8aa268891c466509',·1,·'gmx::Update']]],
51 ····['update_5ftemperature_5fconstants_35',·['update_temperature_constants',·['../classgmx_1_1Update.xhtml#afa5d8919006df7093a2224fbc2f9fd4c',·1,·'gmx::Update']]],51 ····['update_5ftemperature_5fconstants_35',·['update_temperature_constants',·['../classgmx_1_1Update.xhtml#afa5d8919006df7093a2224fbc2f9fd4c',·1,·'gmx::Update']]],
Offset 65, 16 lines modifiedOffset 65, 16 lines modified
65 ········['../classgmx_1_1UpdateGroups.xhtml',·1,·'gmx::UpdateGroups']65 ········['../classgmx_1_1UpdateGroups.xhtml',·1,·'gmx::UpdateGroups']
66 ····]],66 ····]],
67 ····['updategroups_2eh_48',·['updategroups.h',·['../updategroups_8h.xhtml',·1,·'']]],67 ····['updategroups_2eh_48',·['updategroups.h',·['../updategroups_8h.xhtml',·1,·'']]],
68 ····['updategroupscog_49',·['updategroupscog',·['../classgmx_1_1UpdateGroupsCog.xhtml#af4073554edea0cc98542003e47f7dccd',·1,·'gmx::UpdateGroupsCog::UpdateGroupsCog()'],68 ····['updategroupscog_49',·['updategroupscog',·['../classgmx_1_1UpdateGroupsCog.xhtml#af4073554edea0cc98542003e47f7dccd',·1,·'gmx::UpdateGroupsCog::UpdateGroupsCog()'],
69 ········['../classgmx_1_1UpdateGroupsCog.xhtml',·1,·'gmx::UpdateGroupsCog']69 ········['../classgmx_1_1UpdateGroupsCog.xhtml',·1,·'gmx::UpdateGroupsCog']
70 ····]],70 ····]],
71 ····['updategroupscog_2eh_50',·['updategroupscog.h',·['../updategroupscog_8h.xhtml',·1,·'']]],71 ····['updategroupscog_2eh_50',·['updategroupscog.h',·['../updategroupscog_8h.xhtml',·1,·'']]],
 72 ····['updatehistory_51',·['updatehistory',·['../classgmx_1_1Awh.xhtml#ad138cec7cc1fefd7c1787d5f94279494',·1,·'gmx::Awh::updateHistory()'],
72 ····['updatehistory_51',·['updatehistory',·['../structt__oriresdata.xhtml#a7806904b5f7dcb25d5dec4555be7b5ac',·1,·'t_oriresdata::updateHistory()'],73 ········['../structt__oriresdata.xhtml#a7806904b5f7dcb25d5dec4555be7b5ac',·1,·'t_oriresdata::updateHistory()']
73 ········['../classgmx_1_1Awh.xhtml#ad138cec7cc1fefd7c1787d5f94279494',·1,·'gmx::Awh::updateHistory()'] 
74 ····]],74 ····]],
75 ····['updatepositions_52',·['updatePositions',·['../namespacegmx.xhtml#a5d079b5d5fedb7c55a119e1342cb7fd8',·1,·'gmx']]],75 ····['updatepositions_52',·['updatePositions',·['../namespacegmx.xhtml#a5d079b5d5fedb7c55a119e1342cb7fd8',·1,·'gmx']]],
76 ····['updateprevsteppullcom_53',·['updatePrevStepPullCom',·['../pull_8h.xhtml#a95ef443e2830253d2aef461a2f811c4e',·1,·'pull.h']]],76 ····['updateprevsteppullcom_53',·['updatePrevStepPullCom',·['../pull_8h.xhtml#a95ef443e2830253d2aef461a2f811c4e',·1,·'pull.h']]],
77 ····['updatevelocities_54',·['updateVelocities',·['../namespacegmx.xhtml#a2b97181f1d88633664f339242db99d74',·1,·'gmx']]],77 ····['updatevelocities_54',·['updateVelocities',·['../namespacegmx.xhtml#a2b97181f1d88633664f339242db99d74',·1,·'gmx']]],
78 ····['updatewithdatapoint_55',·['updateWithDataPoint',·['../classgmx_1_1ExponentialMovingAverage.xhtml#a5293fc09bb63cc379eed9ca1fa20c760',·1,·'gmx::ExponentialMovingAverage']]],78 ····['updatewithdatapoint_55',·['updateWithDataPoint',·['../classgmx_1_1ExponentialMovingAverage.xhtml#a5293fc09bb63cc379eed9ca1fa20c760',·1,·'gmx::ExponentialMovingAverage']]],
79 ····['uppercorner_56',·['upperCorner',·['../structgmx_1_1GridDimensions.xhtml#acd92331d1b9d316fe200653256a9c88c',·1,·'gmx::GridDimensions']]],79 ····['uppercorner_56',·['upperCorner',·['../structgmx_1_1GridDimensions.xhtml#acd92331d1b9d316fe200653256a9c88c',·1,·'gmx::GridDimensions']]],
80 ····['upstring_57',·['upstring',·['../cstringutil_8h.xhtml#a74173c7afe5600452edf4956ae58bbe8',·1,·'cstringutil.cpp']]],80 ····['upstring_57',·['upstring',·['../cstringutil_8h.xhtml#a74173c7afe5600452edf4956ae58bbe8',·1,·'cstringutil.cpp']]],
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271 ····]],271 ····]],
272 ····['outputenv_5f_113',·['outputEnv_',·['../classgmx_1_1SimulatorEnv.xhtml#aa1aa20355975f59f3a92ff3e3b6926e3',·1,·'gmx::SimulatorEnv']]],272 ····['outputenv_5f_113',·['outputEnv_',·['../classgmx_1_1SimulatorEnv.xhtml#aa1aa20355975f59f3a92ff3e3b6926e3',·1,·'gmx::SimulatorEnv']]],
273 ····['outputfile_114',·['outputfile',·['../classgmx_1_1TrajectoryFileOpener.xhtml#a95a59e0ec86cab7744c655097d17b211',·1,·'gmx::TrajectoryFileOpener::outputFile()'],273 ····['outputfile_114',·['outputfile',·['../classgmx_1_1TrajectoryFileOpener.xhtml#a95a59e0ec86cab7744c655097d17b211',·1,·'gmx::TrajectoryFileOpener::outputFile()'],
274 ········['../classgmx_1_1FileNameOption.xhtml#a80e635f1f2b0eac13821b49a09a16936',·1,·'gmx::FileNameOption::outputFile()']274 ········['../classgmx_1_1FileNameOption.xhtml#a80e635f1f2b0eac13821b49a09a16936',·1,·'gmx::FileNameOption::outputFile()']
275 ····]],275 ····]],
276 ····['outputrequirementoptiondirector_115',·['OutputRequirementOptionDirector',·['../classgmx_1_1OutputRequirementOptionDirector.xhtml',·1,·'gmx']]],276 ····['outputrequirementoptiondirector_115',·['OutputRequirementOptionDirector',·['../classgmx_1_1OutputRequirementOptionDirector.xhtml',·1,·'gmx']]],
277 ····['outputrequirements_116',·['OutputRequirements',·['../structgmx_1_1OutputRequirements.xhtml',·1,·'gmx']]],277 ····['outputrequirements_116',·['OutputRequirements',·['../structgmx_1_1OutputRequirements.xhtml',·1,·'gmx']]],
278 ····['outputselector_117',·['outputselector',·['../classgmx_1_1OutputSelector.xhtml#af79a9c1cb189a56a816f564b2ab506d6',·1,·'gmx::OutputSelector::OutputSelector(OutputSelector·&amp;&amp;old)·noexcept=default'],278 ····['outputselector_117',·['outputselector',·['../classgmx_1_1OutputSelector.xhtml',·1,·'gmx::OutputSelector'],
279 ········['../classgmx_1_1OutputSelector.xhtml#adfdcfbbeb5cbf85a8ec3cd2c0c92ab69',·1,·'gmx::OutputSelector::OutputSelector(const·Selection·&amp;sel)'],279 ········['../classgmx_1_1OutputSelector.xhtml#adfdcfbbeb5cbf85a8ec3cd2c0c92ab69',·1,·'gmx::OutputSelector::OutputSelector(const·Selection·&amp;sel)'],
280 ········['../classgmx_1_1OutputSelector.xhtml',·1,·'gmx::OutputSelector']280 ········['../classgmx_1_1OutputSelector.xhtml#af79a9c1cb189a56a816f564b2ab506d6',·1,·'gmx::OutputSelector::OutputSelector(OutputSelector·&amp;&amp;old)·noexcept=default']
281 ····]],281 ····]],
282 ····['outputselector_2eh_118',·['outputselector.h',·['../outputselector_8h.xhtml',·1,·'']]],282 ····['outputselector_2eh_118',·['outputselector.h',·['../outputselector_8h.xhtml',·1,·'']]],
283 ····['outputselectorpointer_119',·['OutputSelectorPointer',·['../namespacegmx.xhtml#a139b5367368caa9a3189d367ecb2ba36',·1,·'gmx']]],283 ····['outputselectorpointer_119',·['OutputSelectorPointer',·['../namespacegmx.xhtml#a139b5367368caa9a3189d367ecb2ba36',·1,·'gmx']]],
284 ····['over_20mpi_120',·['Spatial·domain·decomposition·(for·parallelization·over·MPI)',·['../group__module__domdec.xhtml',·1,·'']]],284 ····['over_20mpi_120',·['Spatial·domain·decomposition·(for·parallelization·over·MPI)',·['../group__module__domdec.xhtml',·1,·'']]],
285 ····['over_5falloc_5fdd_121',·['over_alloc_dd',·['../smalloc_8h.xhtml#af1533c63c1d40c5bb9bfaaa6d898369a',·1,·'smalloc.cpp']]],285 ····['over_5falloc_5fdd_121',·['over_alloc_dd',·['../smalloc_8h.xhtml#af1533c63c1d40c5bb9bfaaa6d898369a',·1,·'smalloc.cpp']]],
286 ····['over_5falloc_5ffac_122',·['OVER_ALLOC_FAC',·['../smalloc_8h.xhtml#a49ab20d4d965f7279f9f90dd5300ef46',·1,·'smalloc.h']]],286 ····['over_5falloc_5ffac_122',·['OVER_ALLOC_FAC',·['../smalloc_8h.xhtml#a49ab20d4d965f7279f9f90dd5300ef46',·1,·'smalloc.h']]],
287 ····['over_5falloc_5flarge_123',·['over_alloc_large',·['../smalloc_8h.xhtml#af01b4882f613834c3da2433b37ed5753',·1,·'smalloc.h']]],287 ····['over_5falloc_5flarge_123',·['over_alloc_large',·['../smalloc_8h.xhtml#af01b4882f613834c3da2433b37ed5753',·1,·'smalloc.h']]],
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83 ····['referencecoordinates_55',·['referenceCoordinates',·['../structt__oriresdata.xhtml#af77d3bc2cdec9b240c667f8075237a8a',·1,·'t_oriresdata']]],83 ····['referencecoordinates_55',·['referenceCoordinates',·['../structt__oriresdata.xhtml#af77d3bc2cdec9b240c667f8075237a8a',·1,·'t_oriresdata']]],
84 ····['referencetemperaturecallback_56',·['ReferenceTemperatureCallback',·['../group__module__modularsimulator.xhtml#ga00d43387a13cded843d155f43add55f2',·1,·'gmx']]],84 ····['referencetemperaturecallback_56',·['ReferenceTemperatureCallback',·['../group__module__modularsimulator.xhtml#ga00d43387a13cded843d155f43add55f2',·1,·'gmx']]],
85 ····['refid_57',·['refid',·['../classgmx_1_1SelectionPosition.xhtml#a927c30a6001be41a8af890006c40bac0',·1,·'gmx::SelectionPosition::refId()'],85 ····['refid_57',·['refid',·['../classgmx_1_1SelectionPosition.xhtml#a927c30a6001be41a8af890006c40bac0',·1,·'gmx::SelectionPosition::refId()'],
86 ········['../structgmx__ana__indexmap__t.xhtml#a36f6687375c680532b55396ac1d2dc5e',·1,·'gmx_ana_indexmap_t::refid']86 ········['../structgmx__ana__indexmap__t.xhtml#a36f6687375c680532b55396ac1d2dc5e',·1,·'gmx_ana_indexmap_t::refid']
87 ····]],87 ····]],
88 ····['refids_58',·['refIds',·['../classgmx_1_1Selection.xhtml#a14558d886a11842e39a1f93dfd1db358',·1,·'gmx::Selection']]],88 ····['refids_58',·['refIds',·['../classgmx_1_1Selection.xhtml#a14558d886a11842e39a1f93dfd1db358',·1,·'gmx::Selection']]],
89 ····['refindex_59',·['refIndex',·['../classgmx_1_1AnalysisNeighborhoodPair.xhtml#a713650494eafbd30a66902c2971f16fe',·1,·'gmx::AnalysisNeighborhoodPair']]],89 ····['refindex_59',·['refIndex',·['../classgmx_1_1AnalysisNeighborhoodPair.xhtml#a713650494eafbd30a66902c2971f16fe',·1,·'gmx::AnalysisNeighborhoodPair']]],
90 ····['register_2ecpp_60',·['register.cpp',·['../frameconverters_2register_8cpp.xhtml',·1,·'(Global·Namespace)'],90 ····['register_2ecpp_60',·['register.cpp',·['../tests_2register_8cpp.xhtml',·1,·'(Global·Namespace)'],
91 ········['../tests_2register_8cpp.xhtml',·1,·'(Global·Namespace)']91 ········['../frameconverters_2register_8cpp.xhtml',·1,·'(Global·Namespace)']
92 ····]],92 ····]],
93 ····['register_2eh_61',·['register.h',·['../register_8h.xhtml',·1,·'']]],93 ····['register_2eh_61',·['register.h',·['../register_8h.xhtml',·1,·'']]],
94 ····['registeranalysisdataset_62',·['registerAnalysisDataset',·['../classgmx_1_1TrajectoryAnalysisModule.xhtml#a86b3b5cd87518e988e8b5452b39a3ad1',·1,·'gmx::TrajectoryAnalysisModule']]],94 ····['registeranalysisdataset_62',·['registerAnalysisDataset',·['../classgmx_1_1TrajectoryAnalysisModule.xhtml#a86b3b5cd87518e988e8b5452b39a3ad1',·1,·'gmx::TrajectoryAnalysisModule']]],
95 ····['registerbasicdataset_63',·['registerBasicDataset',·['../classgmx_1_1TrajectoryAnalysisModule.xhtml#ad946d2af4c8e284ef349f2cd816495bb',·1,·'gmx::TrajectoryAnalysisModule']]],95 ····['registerbasicdataset_63',·['registerBasicDataset',·['../classgmx_1_1TrajectoryAnalysisModule.xhtml#ad946d2af4c8e284ef349f2cd816495bb',·1,·'gmx::TrajectoryAnalysisModule']]],
96 ····['registerdomdeccallback_64',·['registerDomDecCallback',·['../group__module__modularsimulator.xhtml#gafbccf39923b2a69b05bc61d185671e47',·1,·'gmx::IDomDecHelperClient']]],96 ····['registerdomdeccallback_64',·['registerDomDecCallback',·['../group__module__modularsimulator.xhtml#gafbccf39923b2a69b05bc61d185671e47',·1,·'gmx::IDomDecHelperClient']]],
97 ····['registerenergycallback_65',·['registerEnergyCallback',·['../group__module__modularsimulator.xhtml#gaf0c4df1d5e6640192354e47e19d66021',·1,·'gmx::IEnergySignallerClient']]],97 ····['registerenergycallback_65',·['registerEnergyCallback',·['../group__module__modularsimulator.xhtml#gaf0c4df1d5e6640192354e47e19d66021',·1,·'gmx::IEnergySignallerClient']]],
98 ····['registerlaststepcallback_66',·['registerLastStepCallback',·['../group__module__modularsimulator.xhtml#gaa6daae642dd3763973e4581f0a9f820c',·1,·'gmx::ILastStepSignallerClient']]],98 ····['registerlaststepcallback_66',·['registerLastStepCallback',·['../group__module__modularsimulator.xhtml#gaa6daae642dd3763973e4581f0a9f820c',·1,·'gmx::ILastStepSignallerClient']]],
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2 ····['u_0',·['u',·['../structt__pargs.xhtml#a9896c617087886506822e9a67795e651',·1,·'t_pargs']]],2 ····['u_0',·['u',·['../structt__pargs.xhtml#a9896c617087886506822e9a67795e651',·1,·'t_pargs']]],
3 ····['uint8_1',·['uInt8',·['../namespacegmx.xhtml#a4355a7e0f393d42cbb5b2a47aefea966ab0cffa75aa037e628ccfdf46bcc086ac',·1,·'gmx']]],3 ····['uint8_1',·['uInt8',·['../namespacegmx.xhtml#a4355a7e0f393d42cbb5b2a47aefea966ab0cffa75aa037e628ccfdf46bcc086ac',·1,·'gmx']]],
4 ····['uniformintdistribution_2',·['uniformintdistribution',·['../classgmx_1_1UniformIntDistribution.xhtml#a09808fada94acf89dc12c30310afaeda',·1,·'gmx::UniformIntDistribution::UniformIntDistribution(const·param_type·&amp;param)'],4 ····['uniformintdistribution_2',·['uniformintdistribution',·['../classgmx_1_1UniformIntDistribution.xhtml#a09808fada94acf89dc12c30310afaeda',·1,·'gmx::UniformIntDistribution::UniformIntDistribution(const·param_type·&amp;param)'],
5 ········['../classgmx_1_1UniformIntDistribution.xhtml#a790697adc208c8ecf2e9164ea00cf24b',·1,·'gmx::UniformIntDistribution::UniformIntDistribution(result_type·a=0,·result_type·b=std::numeric_limits&lt;·result_type·&gt;::max())'],5 ········['../classgmx_1_1UniformIntDistribution.xhtml#a790697adc208c8ecf2e9164ea00cf24b',·1,·'gmx::UniformIntDistribution::UniformIntDistribution(result_type·a=0,·result_type·b=std::numeric_limits&lt;·result_type·&gt;::max())'],
6 ········['../classgmx_1_1UniformIntDistribution.xhtml',·1,·'gmx::UniformIntDistribution&lt;·IntType·&gt;']6 ········['../classgmx_1_1UniformIntDistribution.xhtml',·1,·'gmx::UniformIntDistribution&lt;·IntType·&gt;']
7 ····]],7 ····]],
8 ····['uniformintdistribution_2eh_3',·['uniformintdistribution.h',·['../uniformintdistribution_8h.xhtml',·1,·'']]],8 ····['uniformintdistribution_2eh_3',·['uniformintdistribution.h',·['../uniformintdistribution_8h.xhtml',·1,·'']]],
9 ····['uniformrealdistribution_4',·['uniformrealdistribution',·['../classgmx_1_1UniformRealDistribution.xhtml#a8a58a25b5bc17882dfc3671530d1aad3',·1,·'gmx::UniformRealDistribution::UniformRealDistribution()'],9 ····['uniformrealdistribution_4',·['uniformrealdistribution',·['../classgmx_1_1UniformRealDistribution.xhtml',·1,·'gmx::UniformRealDistribution&lt;·RealType·&gt;'],
10 ········['../classgmx_1_1UniformRealDistribution.xhtml',·1,·'gmx::UniformRealDistribution&lt;·RealType·&gt;'],10 ········['../classgmx_1_1UniformRealDistribution.xhtml#a8a58a25b5bc17882dfc3671530d1aad3',·1,·'gmx::UniformRealDistribution::UniformRealDistribution(const·param_type·&amp;param)'],
11 ········['../classgmx_1_1UniformRealDistribution.xhtml#abf980964b1ce2f1fade69a0578b25e33',·1,·'gmx::UniformRealDistribution::UniformRealDistribution()']11 ········['../classgmx_1_1UniformRealDistribution.xhtml#abf980964b1ce2f1fade69a0578b25e33',·1,·'gmx::UniformRealDistribution::UniformRealDistribution(result_type·a=0.0,·result_type·b=1.0)']
12 ····]],12 ····]],
13 ····['uniformrealdistribution_2eh_5',·['uniformrealdistribution.h',·['../uniformrealdistribution_8h.xhtml',·1,·'']]],13 ····['uniformrealdistribution_2eh_5',·['uniformrealdistribution.h',·['../uniformrealdistribution_8h.xhtml',·1,·'']]],
14 ····['uniformrealdistribution_3c_20real_20_3e_6',·['UniformRealDistribution&lt;·real·&gt;',·['../classgmx_1_1UniformRealDistribution.xhtml',·1,·'gmx']]],14 ····['uniformrealdistribution_3c_20real_20_3e_6',·['UniformRealDistribution&lt;·real·&gt;',·['../classgmx_1_1UniformRealDistribution.xhtml',·1,·'gmx']]],
15 ····['unique_5fcptr_7',·['unique_cptr',·['../namespacegmx.xhtml#a89d1da25b1e1f9331f1fe99b15072eac',·1,·'gmx']]],15 ····['unique_5fcptr_7',·['unique_cptr',·['../namespacegmx.xhtml#a89d1da25b1e1f9331f1fe99b15072eac',·1,·'gmx']]],
16 ····['unique_5fcptr_2eh_8',·['unique_cptr.h',·['../unique__cptr_8h.xhtml',·1,·'']]],16 ····['unique_5fcptr_2eh_8',·['unique_cptr.h',·['../unique__cptr_8h.xhtml',·1,·'']]],
17 ····['unitcelliscompact_9',·['UnitCellIsCompact',·['../namespacegmx.xhtml#ae520b2721d9d5166e7c015b2654bd1d9ad4d785ddf0c77e7b697efd2b5ec376e1',·1,·'gmx']]],17 ····['unitcelliscompact_9',·['UnitCellIsCompact',·['../namespacegmx.xhtml#ae520b2721d9d5166e7c015b2654bd1d9ad4d785ddf0c77e7b697efd2b5ec376e1',·1,·'gmx']]],
18 ····['unitcellisrectangular_10',·['UnitCellIsRectangular',·['../namespacegmx.xhtml#ae520b2721d9d5166e7c015b2654bd1d9a8e7bda81ce54b8cf90c3b856c83e7d9f',·1,·'gmx']]],18 ····['unitcellisrectangular_10',·['UnitCellIsRectangular',·['../namespacegmx.xhtml#ae520b2721d9d5166e7c015b2654bd1d9a8e7bda81ce54b8cf90c3b856c83e7d9f',·1,·'gmx']]],
19 ····['unitcellistriclinic_11',·['UnitCellIsTriclinic',·['../namespacegmx.xhtml#ae520b2721d9d5166e7c015b2654bd1d9a99285c8187fb87e756f127435045dc3f',·1,·'gmx']]],19 ····['unitcellistriclinic_11',·['UnitCellIsTriclinic',·['../namespacegmx.xhtml#ae520b2721d9d5166e7c015b2654bd1d9a99285c8187fb87e756f127435045dc3f',·1,·'gmx']]],
20 ····['unitcelltype_12',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]],20 ····['unitcelltype_12',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]],
21 ····['unitcelltypenames_13',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]],21 ····['unitcelltypenames_13',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]],
 22 ····['unitvector_14',·['unitvector',·['../namespacegmx.xhtml#a53215047e2f488dfbf48164090c07b40',·1,·'gmx::unitVector()'],
22 ····['unitvector_14',·['unitvector',·['../classgmx_1_1BasicVector.xhtml#a2fc805de143df5ecfe38f2cb50d84e6c',·1,·'gmx::BasicVector::unitVector()'],23 ········['../classgmx_1_1BasicVector.xhtml#a2fc805de143df5ecfe38f2cb50d84e6c',·1,·'gmx::BasicVector::unitVector()']
23 ········['../namespacegmx.xhtml#a53215047e2f488dfbf48164090c07b40',·1,·'gmx::unitVector(const·VectorType·&amp;v)'] 
24 ····]],24 ····]],
25 ····['unity_15',·['Unity',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099fa82dd98f1d663acc318e6a8ec4ab69b7a',·1,·'gmx']]],25 ····['unity_15',·['Unity',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099fa82dd98f1d663acc318e6a8ec4ab69b7a',·1,·'gmx']]],
26 ····['unknown_16',·['Unknown',·['../namespacegmx.xhtml#a20e189e3f31f5f1e8581a5cc84063453a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx']]],26 ····['unknown_16',·['Unknown',·['../namespacegmx.xhtml#a20e189e3f31f5f1e8581a5cc84063453a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx']]],
27 ····['unpackrecvbufkernel_17',·['unpackRecvBufKernel',·['../namespacegmx.xhtml#a704128fa72f8ce7dcf08d0063a166036',·1,·'gmx']]],27 ····['unpackrecvbufkernel_17',·['unpackRecvBufKernel',·['../namespacegmx.xhtml#a704128fa72f8ce7dcf08d0063a166036',·1,·'gmx']]],
28 ····['unpaddedarrayref_18',·['unpaddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#ad5b878ca7749f5b8f52e006269fbfc2f',·1,·'gmx::ArrayRefWithPadding']]],28 ····['unpaddedarrayref_18',·['unpaddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#ad5b878ca7749f5b8f52e006269fbfc2f',·1,·'gmx::ArrayRefWithPadding']]],
29 ····['unpaddedconstarrayref_19',·['unpaddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a2c3f73497c6bc71264ae1af84b6522ae',·1,·'gmx::ArrayRefWithPadding']]],29 ····['unpaddedconstarrayref_19',·['unpaddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a2c3f73497c6bc71264ae1af84b6522ae',·1,·'gmx::ArrayRefWithPadding']]],
30 ····['unset_20',·['Unset',·['../md__enums_8h.xhtml#a1df3eedfba9424ae3e518284a453d95cac9f88e098f6fe4e4e112eeb05ccb9671',·1,·'md_enums.h']]],30 ····['unset_20',·['Unset',·['../md__enums_8h.xhtml#a1df3eedfba9424ae3e518284a453d95cac9f88e098f6fe4e4e112eeb05ccb9671',·1,·'md_enums.h']]],
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Offset 76280, 19 lines modifiedOffset 76280, 19 lines modified
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76281 ······<name>main</name>76281 ······<name>main</name>
76282 ····</member>76282 ····</member>
76283 ··</compound>76283 ··</compound>
76284 ··<compound·refid="abstractdata_8cpp"·kind="file">76284 ··<compound·refid="abstractdata_8cpp"·kind="file">
76285 ····<name>abstractdata.cpp</name>76285 ····<name>abstractdata.cpp</name>
76286 ··</compound>76286 ··</compound>
76287 ··<compound·refid="arraydata_8cpp"·kind="file">76287 ··<compound·refid="analysisdata_8cpp"·kind="file">
76288 ····<name>arraydata.cpp</name>76288 ····<name>analysisdata.cpp</name>
76289 ··</compound>76289 ··</compound>
76290 ··<compound·refid="tests_2arraydata_8cpp"·kind="file">76290 ··<compound·refid="tests_2analysisdata_8cpp"·kind="file">
76291 ····<name>arraydata.cpp</name>76291 ····<name>analysisdata.cpp</name>
76292 ··</compound>76292 ··</compound>
76293 ··<compound·refid="dataframe_8cpp"·kind="file">76293 ··<compound·refid="dataframe_8cpp"·kind="file">
76294 ····<name>dataframe.cpp</name>76294 ····<name>dataframe.cpp</name>
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76296 ··<compound·refid="datamodule_8cpp"·kind="file">76296 ··<compound·refid="datamodule_8cpp"·kind="file">
76297 ····<name>datamodule.cpp</name>76297 ····<name>datamodule.cpp</name>
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Offset 76328, 19 lines modifiedOffset 76328, 19 lines modified
76328 ··</compound>76328 ··</compound>
76329 ··<compound·refid="plot_8cpp"·kind="file">76329 ··<compound·refid="plot_8cpp"·kind="file">
76330 ····<name>plot.cpp</name>76330 ····<name>plot.cpp</name>
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76332 ··<compound·refid="paralleloptions_8h"·kind="file">76332 ··<compound·refid="paralleloptions_8h"·kind="file">
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76335 ··<compound·refid="analysisdata_8cpp"·kind="file">76335 ··<compound·refid="arraydata_8cpp"·kind="file">
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76344 ··<compound·refid="tests_2average_8cpp"·kind="file">76344 ··<compound·refid="tests_2average_8cpp"·kind="file">
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Offset 76538, 14 lines modifiedOffset 76538, 20 lines modified
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 76545 ··<compound·refid="densityfittingforceprovider_8cpp"·kind="file">
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 76548 ··<compound·refid="tests_2densityfittingforceprovider_8cpp"·kind="file">
 76549 ····<name>densityfittingforceprovider.cpp</name>
 76550 ··</compound>
76545 ··<compound·refid="densityfittingforceprovider_8h"·kind="file">76551 ··<compound·refid="densityfittingforceprovider_8h"·kind="file">
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76548 ··<compound·refid="densityfittingoptions_8h"·kind="file">76554 ··<compound·refid="densityfittingoptions_8h"·kind="file">
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76551 ··<compound·refid="densityfittingoutputprovider_8cpp"·kind="file">76557 ··<compound·refid="densityfittingoutputprovider_8cpp"·kind="file">
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76572 ··<compound·refid="tests_2densityfittingamplitudelookup_8cpp"·kind="file">76578 ··<compound·refid="tests_2densityfittingamplitudelookup_8cpp"·kind="file">
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76575 ··<compound·refid="densityfittingforceprovider_8cpp"·kind="file"> 
76576 ····<name>densityfittingforceprovider.cpp</name> 
76577 ··</compound> 
76578 ··<compound·refid="tests_2densityfittingforceprovider_8cpp"·kind="file"> 
76579 ····<name>densityfittingforceprovider.cpp</name> 
76580 ··</compound> 
76581 ··<compound·refid="densityfittingoptions_8cpp"·kind="file">76581 ··<compound·refid="densityfittingoptions_8cpp"·kind="file">
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76584 ··<compound·refid="tests_2densityfittingoptions_8cpp"·kind="file">76584 ··<compound·refid="tests_2densityfittingoptions_8cpp"·kind="file">
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 76587 ··<compound·refid="electricfield_8cpp"·kind="file">
 76588 ····<name>electricfield.cpp</name>
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 76590 ··<compound·refid="tests_2electricfield_8cpp"·kind="file">
 76591 ····<name>electricfield.cpp</name>
 76592 ··</compound>
76587 ··<compound·refid="electricfield_8h"·kind="file">76593 ··<compound·refid="electricfield_8h"·kind="file">
76588 ····<name>electricfield.h</name>76594 ····<name>electricfield.h</name>
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76590 ··<compound·refid="nnpot_8cpp"·kind="file">76596 ··<compound·refid="nnpot_8cpp"·kind="file">
76591 ····<name>nnpot.cpp</name>76597 ····<name>nnpot.cpp</name>
76592 ··</compound>76598 ··</compound>
76593 ··<compound·refid="tests_2nnpot_8cpp"·kind="file">76599 ··<compound·refid="tests_2nnpot_8cpp"·kind="file">
76594 ····<name>nnpot.cpp</name>76600 ····<name>nnpot.cpp</name>
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76596 ··<compound·refid="nnpot_8h"·kind="file">76602 ··<compound·refid="nnpot_8h"·kind="file">
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 76605 ··<compound·refid="nnpotforceprovider_8cpp"·kind="file">
 76606 ····<name>nnpotforceprovider.cpp</name>
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 76608 ··<compound·refid="tests_2nnpotforceprovider_8cpp"·kind="file">
 76609 ····<name>nnpotforceprovider.cpp</name>
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76599 ··<compound·refid="nnpotforceprovider_8h"·kind="file">76611 ··<compound·refid="nnpotforceprovider_8h"·kind="file">
76600 ····<name>nnpotforceprovider.h</name>76612 ····<name>nnpotforceprovider.h</name>
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76602 ··<compound·refid="nnpotforceprovider__stub_8cpp"·kind="file">76614 ··<compound·refid="nnpotforceprovider__stub_8cpp"·kind="file">
76603 ····<name>nnpotforceprovider_stub.cpp</name>76615 ····<name>nnpotforceprovider_stub.cpp</name>
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76605 ··<compound·refid="nnpotmodel_8h"·kind="file">76617 ··<compound·refid="nnpotmodel_8h"·kind="file">
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76623 ··<compound·refid="nnpottopologypreprocessor_8h"·kind="file">76635 ··<compound·refid="nnpottopologypreprocessor_8h"·kind="file">
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76626 ··<compound·refid="nnpotforceprovider_8cpp"·kind="file"> 
76627 ····<name>nnpotforceprovider.cpp</name> 
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76629 ··<compound·refid="tests_2nnpotforceprovider_8cpp"·kind="file"> 
76630 ····<name>nnpotforceprovider.cpp</name> 
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76632 ··<compound·refid="torchmodel_8cpp"·kind="file">76638 ··<compound·refid="torchmodel_8cpp"·kind="file">
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2664 ··············Change·this·to·class2664 ··············Change·this·to·class
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2668 ············<term>2668 ············<term>
2669 ··············Member2669 ··············Member
2670 ··············<ref·refid="pme_8cpp_1a39e800d9a258e0c8a553fa7b71e10dcf"·kindref="member">gmx_pme_init</ref>2670 ··············<ref·refid="pme_8h_1a39e800d9a258e0c8a553fa7b71e10dcf"·kindref="member">gmx_pme_init</ref>
2671 ··············(const2671 ··············(const
2672 ··············<ref·refid="structt__commrec"·kindref="compound">t_commrec</ref>2672 ··············<ref·refid="structt__commrec"·kindref="compound">t_commrec</ref>
2673 ··············*cr,·const2673 ··············*cr,·const
2674 ··············<ref·refid="structNumPmeDomains"·kindref="compound">NumPmeDomains</ref>2674 ··············<ref·refid="structNumPmeDomains"·kindref="compound">NumPmeDomains</ref>
2675 ··············&amp;numPmeDomains,·const2675 ··············&amp;numPmeDomains,·const
2676 ··············<ref·refid="structt__inputrec"·kindref="compound">t_inputrec</ref>2676 ··············<ref·refid="structt__inputrec"·kindref="compound">t_inputrec</ref>
2677 ··············*ir,·const·matrix·box,·real·haloExtentForAtomDisplacement,·gmx_bool·bFreeEnergy_q,·gmx_bool·bFreeEnergy_lj,·gmx_bool·bReproducible,·real·ewaldcoeff_q,·real·ewaldcoeff_lj,·int·nthread,·PmeRunMode·runMode,2677 ··············*ir,·const·matrix·box,·real·haloExtentForAtomDisplacement,·gmx_bool·bFreeEnergy_q,·gmx_bool·bFreeEnergy_lj,·gmx_bool·bReproducible,·real·ewaldcoeff_q,·real·ewaldcoeff_lj,·int·nthread,·PmeRunMode·runMode,
Offset 3202, 15 lines modifiedOffset 3202, 15 lines modified
3202 ··············<ndash/>3202 ··············<ndash/>
3203 ··············renaming·coefficients·to·charges·(?)3203 ··············renaming·coefficients·to·charges·(?)
3204 ············</para>3204 ············</para>
3205 ··········</listitem>3205 ··········</listitem>
3206 ··········<varlistentry>3206 ··········<varlistentry>
3207 ············<term>3207 ············<term>
3208 ··············Member3208 ··············Member
3209 ··············<ref·refid="pme_8cpp_1a9cfbe9fa691aabaf1a9e10fa06858c96"·kindref="member">pme_run_mode</ref>3209 ··············<ref·refid="pme_8h_1a9cfbe9fa691aabaf1a9e10fa06858c96"·kindref="member">pme_run_mode</ref>
3210 ··············(const·gmx_pme_t·*pme)3210 ··············(const·gmx_pme_t·*pme)
3211 ············</term>3211 ············</term>
3212 ··········</varlistentry>3212 ··········</varlistentry>
3213 ··········<listitem>3213 ··········<listitem>
3214 ············<para>3214 ············<para>
3215 ··············<anchor·id="todo_1_todo000025"/>3215 ··············<anchor·id="todo_1_todo000025"/>
3216 ··············This·is·a·rather·static·data·that·should·be·managed·by·the·higher·level·task·scheduler.3216 ··············This·is·a·rather·static·data·that·should·be·managed·by·the·higher·level·task·scheduler.
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1.19 KB
./usr/share/doc/gromacs/html/manual-2025.0-beta-Debian_2025.0~beta_1.pdf
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pdftotext {} -
    
Offset 17651, 15 lines modifiedOffset 17651, 15 lines modified
17651 Lindahl,·Erik·Marklund,·Pieter·Meulenhoff,·Teemu·Murtola,·Sander·Pronk,·Alfons·Sijbers,·Balint·Soproni,·David17651 Lindahl,·Erik·Marklund,·Pieter·Meulenhoff,·Teemu·Murtola,·Sander·Pronk,·Alfons·Sijbers,·Balint·Soproni,·David
17652 van·der·Spoel,·Peter·Tieleman,·Carsten·Uphoff,·Jon·Vincent,·Teemu·Virolainen,·Christian·Wennberg,·Maarten17652 van·der·Spoel,·Peter·Tieleman,·Carsten·Uphoff,·Jon·Vincent,·Teemu·Virolainen,·Christian·Wennberg,·Maarten
17653 Wolf,·Artem·Zhmurov17653 Wolf,·Artem·Zhmurov
17654 Project·leaders:·Berk·Hess,·Erik·Lindahl17654 Project·leaders:·Berk·Hess,·Erik·Lindahl
17655 ©·1991·–·2000:17655 ©·1991·–·2000:
17656 Department·of·Biophysical·Chemistry,·University·of·Groningen.·Nijenborgh·4,·9747·AG·Groningen,17656 Department·of·Biophysical·Chemistry,·University·of·Groningen.·Nijenborgh·4,·9747·AG·Groningen,
17657 The·Netherlands.17657 The·Netherlands.
17658 ©·2001·–·2026:17658 ©·2001·–·2024:
17659 The·GROMACS·development·teams·at·the·Royal·Institute·of·Technology·and·Uppsala·University,17659 The·GROMACS·development·teams·at·the·Royal·Institute·of·Technology·and·Uppsala·University,
17660 Sweden.17660 Sweden.
17661 This·manual·is·not·complete·and·has·no·pretension·to·be·so,·due·to·lack·of·time·of·the·contributors·–·our·first17661 This·manual·is·not·complete·and·has·no·pretension·to·be·so,·due·to·lack·of·time·of·the·contributors·–·our·first
17662 priority·is·to·improve·the·software.·It·is·worked·on·continuously,·which·in·some·cases·might·mean·the·information17662 priority·is·to·improve·the·software.·It·is·worked·on·continuously,·which·in·some·cases·might·mean·the·information
17663 is·not·entirely·correct.17663 is·not·entirely·correct.
17664 Comments·on·form·and·content·are·welcome,·please·send·them·to·the·user·discussion·forum·or·the·developer17664 Comments·on·form·and·content·are·welcome,·please·send·them·to·the·user·discussion·forum·or·the·developer
17665 discussion·forum·(see·our·webpage·or·this·section·on·how·to·contribute·(page·595)),·or·open·an·issue·on·our·issue17665 discussion·forum·(see·our·webpage·or·this·section·on·how·to·contribute·(page·595)),·or·open·an·issue·on·our·issue
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./usr/share/doc/gromacs/html/reference-manual/preface.html
    
Offset 4454, 15 lines modifiedOffset 4454, 15 lines modified
00011650:·2055·6e69·7665·7273·6974·7920·6f66·2047···University·of·G00011650:·2055·6e69·7665·7273·6974·7920·6f66·2047···University·of·G
00011660:·726f·6e69·6e67·656e·2e0a·4e69·6a65·6e62··roningen..Nijenb00011660:·726f·6e69·6e67·656e·2e0a·4e69·6a65·6e62··roningen..Nijenb
00011670:·6f72·6768·2034·2c20·3937·3437·2041·4720··orgh·4,·9747·AG·00011670:·6f72·6768·2034·2c20·3937·3437·2041·4720··orgh·4,·9747·AG·
00011680:·4772·6f6e·696e·6765·6e2c·2054·6865·204e··Groningen,·The·N00011680:·4772·6f6e·696e·6765·6e2c·2054·6865·204e··Groningen,·The·N
00011690:·6574·6865·726c·616e·6473·2e3c·2f70·3e0a··etherlands.</p>.00011690:·6574·6865·726c·616e·6473·2e3c·2f70·3e0a··etherlands.</p>.
000116a0:·3c2f·6469·763e·3c2f·626c·6f63·6b71·756f··</div></blockquo000116a0:·3c2f·6469·763e·3c2f·626c·6f63·6b71·756f··</div></blockquo
000116b0:·7465·3e0a·3c70·3ec2·a920·3230·3031·20e2··te>.<p>..·2001·.000116b0:·7465·3e0a·3c70·3ec2·a920·3230·3031·20e2··te>.<p>..·2001·.
000116c0:·8093·2032·3032·363a·3c2f·703e·0a3c·626c··..·2026:</p>.<bl000116c0:·8093·2032·3032·343a·3c2f·703e·0a3c·626c··..·2024:</p>.<bl
000116d0:·6f63·6b71·756f·7465·3e0a·3c64·6976·3e3c··ockquote>.<div><000116d0:·6f63·6b71·756f·7465·3e0a·3c64·6976·3e3c··ockquote>.<div><
000116e0:·703e·5468·6520·4752·4f4d·4143·5320·6465··p>The·GROMACS·de000116e0:·703e·5468·6520·4752·4f4d·4143·5320·6465··p>The·GROMACS·de
000116f0:·7665·6c6f·706d·656e·7420·7465·616d·7320··velopment·teams·000116f0:·7665·6c6f·706d·656e·7420·7465·616d·7320··velopment·teams·
00011700:·6174·2074·6865·2052·6f79·616c·2049·6e73··at·the·Royal·Ins00011700:·6174·2074·6865·2052·6f79·616c·2049·6e73··at·the·Royal·Ins
00011710:·7469·7475·7465·206f·6620·5465·6368·6e6f··titute·of·Techno00011710:·7469·7475·7465·206f·6620·5465·6368·6e6f··titute·of·Techno
00011720:·6c6f·6779·2061·6e64·0a55·7070·7361·6c61··logy·and.Uppsala00011720:·6c6f·6779·2061·6e64·0a55·7070·7361·6c61··logy·and.Uppsala
00011730:·2055·6e69·7665·7273·6974·792c·2053·7765···University,·Swe00011730:·2055·6e69·7665·7273·6974·792c·2053·7765···University,·Swe
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Offset 456, 15 lines modifiedOffset 456, 15 lines modified
456 Lindahl,·Erik·Marklund,·Pieter·Meulenhoff,·Teemu·Murtola,·Sander·Pronk,·Alfons456 Lindahl,·Erik·Marklund,·Pieter·Meulenhoff,·Teemu·Murtola,·Sander·Pronk,·Alfons
457 Sijbers,·Balint·Soproni,·David·van·der·Spoel,·Peter·Tieleman,·Carsten·Uphoff,457 Sijbers,·Balint·Soproni,·David·van·der·Spoel,·Peter·Tieleman,·Carsten·Uphoff,
458 Jon·Vincent,·Teemu·Virolainen,·Christian·Wennberg,·Maarten·Wolf,·Artem·Zhmurov458 Jon·Vincent,·Teemu·Virolainen,·Christian·Wennberg,·Maarten·Wolf,·Artem·Zhmurov
459 Project·leaders:·Berk·Hess,·Erik·Lindahl459 Project·leaders:·Berk·Hess,·Erik·Lindahl
460 ©·1991·–·2000:460 ©·1991·–·2000:
461 ·····Department·of·Biophysical·Chemistry,·University·of·Groningen.461 ·····Department·of·Biophysical·Chemistry,·University·of·Groningen.
462 ·····Nijenborgh·4,·9747·AG·Groningen,·The·Netherlands.462 ·····Nijenborgh·4,·9747·AG·Groningen,·The·Netherlands.
463 ©·2001·–·2026:463 ©·2001·–·2024:
464 ·····The·GROMACS·development·teams·at·the·Royal·Institute·of·Technology464 ·····The·GROMACS·development·teams·at·the·Royal·Institute·of·Technology
465 ·····and·Uppsala·University,·Sweden.465 ·····and·Uppsala·University,·Sweden.
466 This·manual·is·not·complete·and·has·no·pretension·to·be·so,·due·to·lack·of·time466 This·manual·is·not·complete·and·has·no·pretension·to·be·so,·due·to·lack·of·time
467 of·the·contributors·–·our·first·priority·is·to·improve·the·software.·It·is467 of·the·contributors·–·our·first·priority·is·to·improve·the·software.·It·is
468 worked·on·continuously,·which·in·some·cases·might·mean·the·information·is·not468 worked·on·continuously,·which·in·some·cases·might·mean·the·information·is·not
469 entirely·correct.469 entirely·correct.
470 Comments·on·form·and·content·are·welcome,·please·send·them·to·the·_\x8u_\x8s_\x8e_\x8r470 Comments·on·form·and·content·are·welcome,·please·send·them·to·the·_\x8u_\x8s_\x8e_\x8r
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./usr/share/doc/gromacs/html/searchindex.js
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Offset 10967, 17 lines modifiedOffset 10967, 17 lines modified
10967 ········"2017":·[38,·193,·225,·226,·228,·250,·262,·294],10967 ········"2017":·[38,·193,·225,·226,·228,·250,·262,·294],
10968 ········"2018":·[27,·38,·193,·227,·244,·250,·251,·252,·253,·254,·255,·257,·259,·261,·269,·282,·332,·369],10968 ········"2018":·[27,·38,·193,·227,·244,·250,·251,·252,·253,·254,·255,·257,·259,·261,·269,·282,·332,·369],
10969 ········"2019":·[30,·38,·193,·204,·239,·240,·241,·242,·259,·265,·266,·267,·268,·269,·282,·294,·369],10969 ········"2019":·[30,·38,·193,·204,·239,·240,·241,·242,·259,·265,·266,·267,·268,·269,·282,·294,·369],
10970 ········"2020":·[4,·11,·15,·17,·28,·38,·180,·193,·255,·275,·281,·282,·283,·284,·285,·286,·287,·311,·336,·369],10970 ········"2020":·[4,·11,·15,·17,·28,·38,·180,·193,·255,·275,·281,·282,·283,·284,·285,·286,·287,·311,·336,·369],
10971 ········"2021":·[38,·193,·266,·269,·270,·291,·297,·298,·299,·300,·301,·302,·311,·326,·369],10971 ········"2021":·[38,·193,·266,·269,·270,·291,·297,·298,·299,·300,·301,·302,·311,·326,·369],
10972 ········"2022":·[0,·17,·27,·28,·38,·271,·285,·286,·307,·313,·314,·315,·316,·317,·318,·327,·369],10972 ········"2022":·[0,·17,·27,·28,·38,·271,·285,·286,·307,·313,·314,·315,·316,·317,·318,·327,·369],
10973 ········"2023":·[37,·38,·122,·193,·287,·301,·302,·323,·329,·330,·331,·332,·333,·369],10973 ········"2023":·[37,·38,·122,·193,·287,·301,·302,·323,·329,·330,·331,·332,·333,·369],
10974 ········"2024":·[37,·38,·80,·83,·122,·195,·242,·315,·316,·317,·318,·338,·350],10974 ········"2024":·[0,·1,·2,·3,·4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,·23,·24,·25,·26,·27,·28,·29,·30,·31,·32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66[·...·truncated·by·diffoscope;·len:·1467,·SHA:·94734c89120c72b3ece7f5ebf4da8a8bcdeae3b7542c40c864422dec3ba8d670·...·]],
10975 ········"2025":·[0,·1,·2,·3,·4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,·23,·24,·25,·26,·27,·28,·29,·30,·31,·32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66,·67,·68,·69,·70,·71,·72,·73,·74,·75,·76,·77,·78,·79,·80,·81,·82,·83,·84,·85,·86,·87,·88,·89,·90,·91,·92,·93,·94,·95,·96,·97,·98,·99,·100,·101,·102,·103,·104,·105,·106,·107,·108,·109,·110,·111,·112,·113,·114,·115,·116,·117,·118,·119,·120,·121,·122,·123,·124,·125,·126,·127,·128,·129,·130,·131,·132,·133,·134,·135,·136,·137,·138,·139,·140,·141,·142,·143,·144,·145,·146,·147,·148,·149,·150,·151,·152,·153,·154,·155,·156,·157,·158,·159,·160,·161,·162,·163,·164,·165,·166,·167,·168,·169,·170,·171,·172,·173,·174,·175,·176,·177,·178,·179,·180,·181,·182,·183,·184,·185,·186,·187,·188,·189,·190,·191,·192,·193,·194,·195,·196,·197,·198,·199,·200,·201,·202,·203,·204,·205,·206,·207,·208,·209,·210,·211,·212,·213,·214,·215,·216,·217,·218,·219,·220,·221,·222,·223,·224,·225,·226,·227,·228,·229,·230,·231,·232,·233,·234,·235,·236,·237,·238,·239,·240,·241,·242,·243,·244,·245,·246,·247,·248,·249,·250,·251,·252,·253,·254,·255,·256,·257,·258,·259,·260,·261,·262,·263,·264,·265,·266,·267,·268,·269,·270,·271,·272,·273,·274,·275,·276,·277,·278,·279,·280,·281,·282,·283,·284,·285,·286,·287,·288,·289,·290,·291,·292,·293,·294,·295,·296,·297,·298,·299,·300,·301,·302,·303,·304,·305,·306,·307,·308,·309,·310,·311,·312,·313,·314,·315,·316,·317,·318,·319,·320,·321,·322,·323,·324,·325,·326,·327,·328,·329,·330,·331,·332,·333,·334,·335,·336,·337,·338,·339,·340,·341,·342,·343,·344,·345,·347,·348,·349,·350,·351,·352,·353,·355,·356,·357,·358,·359,·360,·361,·362,·363,·364,·365,·366,·367,·368,·369,·370,·371,·372,·373],10975 ········"2025":·[0,·1,·2,·3,·4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,·23,·24,·25,·26,·27,·28,·29,·30,·31,·32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66,·67,·68,·69,·70,·71,·72,·73,·74,·75,·76,·77,·78,·79,·80,·81,·82,·83,·84,·85,·86,·87,·88,·89,·90,·91,·92,·93,·94,·95,·96,·97,·98,·99,·100,·101,·102,·103,·104,·105,·106,·107,·108,·109,·110,·111,·112,·113,·114,·115,·116,·117,·118,·119,·120,·121,·122,·123,·124,·125,·126,·127,·128,·129,·130,·131,·132,·133,·134,·135,·136,·137,·138,·139,·140,·141,·142,·143,·144,·145,·146,·147,·148,·149,·150,·151,·152,·153,·154,·155,·156,·157,·158,·159,·160,·161,·162,·163,·164,·165,·166,·167,·168,·169,·170,·171,·172,·173,·174,·175,·176,·177,·178,·179,·180,·181,·182,·183,·184,·185,·186,·187,·188,·189,·190,·191,·192,·193,·194,·195,·196,·197,·198,·199,·200,·201,·202,·203,·204,·205,·206,·207,·208,·209,·210,·211,·212,·213,·214,·215,·216,·217,·218,·219,·220,·221,·222,·223,·224,·225,·226,·227,·228,·229,·230,·231,·232,·233,·234,·235,·236,·237,·238,·239,·240,·241,·242,·243,·244,·245,·246,·247,·248,·249,·250,·251,·252,·253,·254,·255,·256,·257,·258,·259,·260,·261,·262,·263,·264,·265,·266,·267,·268,·269,·270,·271,·272,·273,·274,·275,·276,·277,·278,·279,·280,·281,·282,·283,·284,·285,·286,·287,·288,·289,·290,·291,·292,·293,·294,·295,·296,·297,·298,·299,·300,·301,·302,·303,·304,·305,·306,·307,·308,·309,·310,·311,·312,·313,·314,·315,·316,·317,·318,·319,·320,·321,·322,·323,·324,·325,·326,·327,·328,·329,·330,·331,·332,·333,·334,·335,·336,·337,·338,·339,·340,·341,·342,·343,·344,·345,·347,·348,·349,·350,·351,·352,·353,·355,·356,·357,·358,·359,·360,·361,·362,·363,·364,·365,·366,·367,·368,·369,·370,·371,·372,·373],
10976 ········"2026":·[0,·1,·2,·3,·4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,·23,·24,·25,·26,·27,·28,·29,·30,·31,·32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66[·...·truncated·by·diffoscope;·len:·1502,·SHA:·c37223b69bc7e30078af17c9883fa46264467079f0783b27b500ec5e1243c305·...·]],10976 ········"2026":·[249,·354],
10977 ········"2027":·249,10977 ········"2027":·249,
10978 ········"2028":·249,10978 ········"2028":·249,
10979 ········"2029":·223,10979 ········"2029":·223,
10980 ········"2031":·242,10980 ········"2031":·242,
10981 ········"2032":·[49,·193,·242],10981 ········"2032":·[49,·193,·242],
10982 ········"2033":·223,10982 ········"2033":·223,
10983 ········"2037":·[223,·239,·250],10983 ········"2037":·[223,·239,·250],
Generated by diffoscope 284