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/srv/reproducible-results/rbuild-debian/tmp.jFwkILcnaP/b1/microbiomeutil_20101212+dfsg1-2_i386.changes vs.
/srv/reproducible-results/rbuild-debian/tmp.jFwkILcnaP/b2/microbiomeutil_20101212+dfsg1-2_i386.changes
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1 ·7e8d2e8fed4bc4bb2f8335ee8ece51a5·33728·science·optional·chimeraslayer_20101212+dfsg1-2_all.deb1 ·7e8d2e8fed4bc4bb2f8335ee8ece51a5·33728·science·optional·chimeraslayer_20101212+dfsg1-2_all.deb
2 ·18ef0bd6eaa87ba34c62626cb5b087f2·2304220·science·optional·microbiomeutil-data_20101212+dfsg1-2_all.deb2 ·0420a94c123cfaf3db4633253c83daf1·2304180·science·optional·microbiomeutil-data_20101212+dfsg1-2_all.deb
3 ·e964770d1b5af3aa7d74e7cb0bb1e3d1·19288·science·optional·microbiomeutil_20101212+dfsg1-2_all.deb3 ·e964770d1b5af3aa7d74e7cb0bb1e3d1·19288·science·optional·microbiomeutil_20101212+dfsg1-2_all.deb
4 ·6544a46f21e946976cd321b1821ef154·12824·debug·optional·nast-ier-dbgsym_20101212+dfsg1-2_i386.deb4 ·6544a46f21e946976cd321b1821ef154·12824·debug·optional·nast-ier-dbgsym_20101212+dfsg1-2_i386.deb
5 ·44f2a264a652a5bf8e04f1b976695dea·21032·science·optional·nast-ier_20101212+dfsg1-2_i386.deb5 ·44f2a264a652a5bf8e04f1b976695dea·21032·science·optional·nast-ier_20101212+dfsg1-2_i386.deb
6 ·4a5e1c4d86c790937168e9f67a366194·30020·science·optional·wigeon_20101212+dfsg1-2_all.deb6 ·4a5e1c4d86c790937168e9f67a366194·30020·science·optional·wigeon_20101212+dfsg1-2_all.deb
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microbiomeutil-data_20101212+dfsg1-2_all.deb
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1 -rw-r--r--···0········0········0········4·2018-07-05·10:03:11.000000·debian-binary1 -rw-r--r--···0········0········0········4·2018-07-05·10:03:11.000000·debian-binary
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control.tar.xz
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control.tar
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./md5sums
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./md5sums
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data.tar.xz
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data.tar
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7 -rw-r--r--···0·root·········(0)·root·········(0)······270·2018-07-05·10:03:11.000000·./usr/share/doc/microbiomeutil-data/README.test7 -rw-r--r--···0·root·········(0)·root·········(0)······270·2018-07-05·10:03:11.000000·./usr/share/doc/microbiomeutil-data/README.test
8 -rw-r--r--···0·root·········(0)·root·········(0)·····1552·2018-07-05·10:03:11.000000·./usr/share/doc/microbiomeutil-data/changelog.Debian.gz8 -rw-r--r--···0·root·········(0)·root·········(0)·····1552·2018-07-05·10:03:11.000000·./usr/share/doc/microbiomeutil-data/changelog.Debian.gz
9 -rw-r--r--···0·root·········(0)·root·········(0)·····1897·2018-07-05·10:03:11.000000·./usr/share/doc/microbiomeutil-data/copyright9 -rw-r--r--···0·root·········(0)·root·········(0)·····1897·2018-07-05·10:03:11.000000·./usr/share/doc/microbiomeutil-data/copyright
10 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2018-07-05·10:03:11.000000·./usr/share/doc/microbiomeutil-data/examples/10 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2018-07-05·10:03:11.000000·./usr/share/doc/microbiomeutil-data/examples/
11 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2018-07-05·10:03:11.000000·./usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/11 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2018-07-05·10:03:11.000000·./usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/
12 -rw-r--r--···0·root·········(0)·root·········(0)······201·2010-12-12·13:36:19.000000·./usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/Makefile12 -rw-r--r--···0·root·········(0)·root·········(0)······201·2010-12-12·13:36:19.000000·./usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/Makefile
13 -rw-r--r--···0·root·········(0)·root·········(0)·····2479·2018-07-05·10:03:11.000000·./usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/chims.NAST.CPS13 -rw-r--r--···0·root·········(0)·root·········(0)·····2479·2018-07-05·10:03:11.000000·./usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/chims.NAST.CPS
14 -rw-r--r--···0·root·········(0)·root·········(0)····14789·2018-07-05·10:03:11.000000·./usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/chims.NAST.CPS.CPC.align.gz14 -rw-r--r--···0·root·········(0)·root·········(0)····14786·2018-07-05·10:03:11.000000·./usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/chims.NAST.CPS.CPC.align.gz
15 -rw-r--r--···0·root·········(0)·root·········(0)·····4088·2018-07-05·10:03:11.000000·./usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/chims.NAST.CPS.CPC.gz15 -rw-r--r--···0·root·········(0)·root·········(0)·····4087·2018-07-05·10:03:11.000000·./usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/chims.NAST.CPS.CPC.gz
16 -rw-r--r--···0·root·········(0)·root·········(0)·····4858·2018-07-05·10:03:11.000000·./usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/chims.NAST.CPS.CPC.wTaxons.gz16 -rw-r--r--···0·root·········(0)·root·········(0)·····4856·2018-07-05·10:03:11.000000·./usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/chims.NAST.CPS.CPC.wTaxons.gz
17 -rw-r--r--···0·root·········(0)·root·········(0)·····2915·2018-07-05·10:03:11.000000·./usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/chims.NAST.CPS_RENAST.cidx17 -rw-r--r--···0·root·········(0)·root·········(0)·····2915·2018-07-05·10:03:11.000000·./usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/chims.NAST.CPS_RENAST.cidx
18 -rw-r--r--···0·root·········(0)·root·········(0)·····7852·2018-07-05·10:03:11.000000·./usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/chims.NAST.CPS_RENAST.gz18 -rw-r--r--···0·root·········(0)·root·········(0)·····7852·2018-07-05·10:03:11.000000·./usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/chims.NAST.CPS_RENAST.gz
19 -rw-r--r--···0·root·········(0)·root·········(0)·····2904·2018-07-05·10:03:11.000000·./usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/chims.NAST.cidx19 -rw-r--r--···0·root·········(0)·root·········(0)·····2904·2018-07-05·10:03:11.000000·./usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/chims.NAST.cidx
20 -rw-r--r--···0·root·········(0)·root·········(0)·····7813·2010-12-12·13:36:19.000000·./usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/chims.NAST.gz20 -rw-r--r--···0·root·········(0)·root·········(0)·····7813·2010-12-12·13:36:19.000000·./usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/chims.NAST.gz
21 -rwxr-xr-x···0·root·········(0)·root·········(0)······210·2018-07-05·10:03:11.000000·./usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/runMe.sh21 -rwxr-xr-x···0·root·········(0)·root·········(0)······210·2018-07-05·10:03:11.000000·./usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/runMe.sh
22 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2018-07-05·10:03:11.000000·./usr/share/doc/microbiomeutil-data/examples/NAST-iEr/22 drwxr-xr-x···0·root·········(0)·root·········(0)········0·2018-07-05·10:03:11.000000·./usr/share/doc/microbiomeutil-data/examples/NAST-iEr/
23 -rw-r--r--···0·root·········(0)·root·········(0)······133·2010-12-12·13:36:19.000000·./usr/share/doc/microbiomeutil-data/examples/NAST-iEr/Makefile23 -rw-r--r--···0·root·········(0)·root·········(0)······133·2010-12-12·13:36:19.000000·./usr/share/doc/microbiomeutil-data/examples/NAST-iEr/Makefile
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./usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/chims.NAST.CPS.CPC.align.gz
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1 gzip·compressed·data,·max·compression,·from·Unix,·original·size·991941 gzip·compressed·data,·max·compression,·from·Unix,·original·size·99214
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chims.NAST.CPS.CPC.align
    
Offset 1, 10 lines modifiedOffset 1, 10 lines modified
1 ChimeraSlayer»  chmraD24_7000004128191580_1-4580:4581-7682_S000428666»     7000004128191580»     S000428666»   1.0850»     99.64»100»     0.8713»       80.01»  0» YES»      NAST:4543-4544»ECO:911-9121 ChimeraSlayer»  chmraD24_7000004128191580_1-4580:4581-7682_S000428666»     7000004128191580»     S000428666»   1.0850»     99.64»100»     0.8713»       80.01»  0» YES»      NAST:4543-4544»ECO:911-912
  
2 /build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl·--query_NAST·tmp.7467.query·--db_NAST·tmp.7467.db·--printAlignments·2 /build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl·--query_NAST·tmp.30428.query·--db_NAST·tmp.30428.db·--printAlignments·
3 -1·Eco··21·-V1············3 -1·Eco··21·-V1············
4 0·7000004128191580········AACAAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAACGGGGAAAGC-----TTTCGG4 0·7000004128191580········AACAAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAACGGGGAAAGC-----TTTCGG
5 1·S000428666··············AACgAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAACG-----t-gaaaag-gg-Gc5 1·S000428666··············AACgAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAACG-----t-gaaaag-gg-Gc
  
6 chmraD24_7000004128191580·AACAAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAACGGGGAAAGC-----TTTCGG6 chmraD24_7000004128191580·AACAAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAACGGGGAAAGC-----TTTCGG
7 Trace·····················0000000000000000000000000000000000000000000000000000000000007 Trace·····················000000000000000000000000000000000000000000000000000000000000
  
Offset 209, 15 lines modifiedOffset 209, 15 lines modified
209 Trace·····················1111111111111111111111209 Trace·····················1111111111111111111111
  
  
210 ChimeraParentSelector»  chmraD24_7000004128191580_1-4580:4581-7682_S000428666»     YES»  99.44[(7000004128191580,·NAST:138-4593,·ECO:21-940,·RawLen:892,·G:91.09,·L:99.78,·1.092);(S000428666,·NAST:4594-6791,·ECO:940-1484,·RawLen:546,·G:84.35,·L:98.90,·1.179)]210 ChimeraParentSelector»  chmraD24_7000004128191580_1-4580:4581-7682_S000428666»     YES»  99.44[(7000004128191580,·NAST:138-4593,·ECO:21-940,·RawLen:892,·G:91.09,·L:99.78,·1.092);(S000428666,·NAST:4594-6791,·ECO:940-1484,·RawLen:546,·G:84.35,·L:98.90,·1.179)]
211 //211 //
212 ChimeraSlayer»  chmraD19_S000378387_1-5075:5076-7682_S000016146»   S000378387» S000016146»       1.0460» 100.00»   100»0.8585»  82.07»     0»    YES» NAST:5061-5063»   ECO:1118-1119212 ChimeraSlayer»  chmraD19_S000378387_1-5075:5076-7682_S000016146»   S000378387» S000016146»       1.0460» 100.00»   100»0.8585»  82.07»     0»    YES» NAST:5061-5063»   ECO:1118-1119
  
213 /build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl·--query_NAST·tmp.7467.query·--db_NAST·tmp.7467.db·--printAlignments·213 /build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl·--query_NAST·tmp.30428.query·--db_NAST·tmp.30428.db·--printAlignments·
214 -1·Eco··9·-V1·············214 -1·Eco··9·-V1·············
215 0·S000378387··············A--CT-GCTCAGGACGAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAGCGGACAGAA215 0·S000378387··············A--CT-GCTCAGGACGAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAGCGGACAGAA
216 1·S000016146··············AtcCTgGCTCAGGACGAACGCTGGCGGCGTGCCTAAcACATGCAAGTCGAaCGGgg--A-216 1·S000016146··············AtcCTgGCTCAGGACGAACGCTGGCGGCGTGCCTAAcACATGCAAGTCGAaCGGgg--A-
  
217 chmraD19_S000378387_1-507·A--CT-GCTCAGGACGAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAGCGGACAGAA217 chmraD19_S000378387_1-507·A--CT-GCTCAGGACGAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAGCGGACAGAA
218 Trace·····················000000000000000000000000000000000000000000000000000000000000218 Trace·····················000000000000000000000000000000000000000000000000000000000000
  
Offset 422, 15 lines modifiedOffset 422, 15 lines modified
422 Trace·····················11111111111111111422 Trace·····················11111111111111111
  
  
423 ChimeraParentSelector»  chmraD19_S000378387_1-5075:5076-7682_S000016146»   YES»99.87[(S000378387,·NAST:118-5077,·ECO:8-1125,·RawLen:1120,·G:95.22,·L:99.82,·1.049);(S000016146,·NAST:5079-6798,·ECO:1126-1490,·RawLen:367,·G:85.20,·L:100.00,·1.172)]423 ChimeraParentSelector»  chmraD19_S000378387_1-5075:5076-7682_S000016146»   YES»99.87[(S000378387,·NAST:118-5077,·ECO:8-1125,·RawLen:1120,·G:95.22,·L:99.82,·1.049);(S000016146,·NAST:5079-6798,·ECO:1126-1490,·RawLen:367,·G:85.20,·L:100.00,·1.172)]
424 //424 //
425 ChimeraSlayer»  chmraD12_7000004131500344_1-4694:4695-7682_S000127669»     7000004131500344»     S000127669»   1.0372»     99.79»100»     0.9299»       89.47»  0» YES»      NAST:4689-4691»ECO:994-995425 ChimeraSlayer»  chmraD12_7000004131500344_1-4694:4695-7682_S000127669»     7000004131500344»     S000127669»   1.0372»     99.79»100»     0.9299»       89.47»  0» YES»      NAST:4689-4691»ECO:994-995
  
426 /build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl·--query_NAST·tmp.7467.query·--db_NAST·tmp.7467.db·--printAlignments·426 /build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl·--query_NAST·tmp.30428.query·--db_NAST·tmp.30428.db·--printAlignments·
427 -1·Eco··15·-V1············427 -1·Eco··15·-V1············
428 0·7000004131500344········GCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAGCGGCAGCACAAGT--428 0·7000004131500344········GCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAGCGGCAGCACAAGT--
429 1·S000127669··············GCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAGCGGtAa-ca-g--an429 1·S000127669··············GCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAGCGGtAa-ca-g--an
  
430 chmraD12_7000004131500344·GCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAGCGGCAGCACAAGT--430 chmraD12_7000004131500344·GCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAGCGGCAGCACAAGT--
431 Trace·····················000000000000000000000000000000000000000000000000000000000000431 Trace·····················000000000000000000000000000000000000000000000000000000000000
  
Offset 627, 15 lines modifiedOffset 627, 15 lines modified
627 Trace·····················1111111111111111111111111111627 Trace·····················1111111111111111111111111111
  
  
628 ChimeraParentSelector»  chmraD12_7000004131500344_1-4694:4695-7682_S000127669»     YES»  99.59[(7000004131500344,·NAST:130-4710,·ECO:15-999,·RawLen:984,·G:96.04,·L:99.59,·1.037);(S000127669,·NAST:4711-6744,·ECO:999-1468,·RawLen:469,·G:92.03,·L:99.57,·1.082)]628 ChimeraParentSelector»  chmraD12_7000004131500344_1-4694:4695-7682_S000127669»     YES»  99.59[(7000004131500344,·NAST:130-4710,·ECO:15-999,·RawLen:984,·G:96.04,·L:99.59,·1.037);(S000127669,·NAST:4711-6744,·ECO:999-1468,·RawLen:469,·G:92.03,·L:99.57,·1.082)]
629 //629 //
630 ChimeraSlayer»  chmraD13_S000004801_1-4690:4691-7682_S000437365»   S000004801» S000437365»       1.0382» 100.00»   100»0.9140»  88.04»     0»    YES» NAST:4658-4660»   ECO:983-984630 ChimeraSlayer»  chmraD13_S000004801_1-4690:4691-7682_S000437365»   S000004801» S000437365»       1.0382» 100.00»   100»0.9140»  88.04»     0»    YES» NAST:4658-4660»   ECO:983-984
  
631 /build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl·--query_NAST·tmp.7467.query·--db_NAST·tmp.7467.db·--printAlignments·631 /build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl·--query_NAST·tmp.30428.query·--db_NAST·tmp.30428.db·--printAlignments·
632 -1·Eco··102·V1-V2·········632 -1·Eco··102·V1-V2·········
633 0·S000004801··············ACGGGTGAGTAACACGTAGATAATCTACCCCTGTGTTCGGGATAACAGTGCGAAAGCGCT633 0·S000004801··············ACGGGTGAGTAACACGTAGATAATCTACCCCTGTGTTCGGGATAACAGTGCGAAAGCGCT
634 1·S000437365··············ACGGGTGAGTAACgCGTgagTgAcCTACCCtgGTGTctGGGATAACccTGCGAAAGtGgg634 1·S000437365··············ACGGGTGAGTAACgCGTgagTgAcCTACCCtgGTGTctGGGATAACccTGCGAAAGtGgg
  
635 chmraD13_S000004801_1-469·ACGGGTGAGTAACACGTAGATAATCTACCCCTGTGTTCGGGATAACAGTGCGAAAGCGCT635 chmraD13_S000004801_1-469·ACGGGTGAGTAACACGTAGATAATCTACCCCTGTGTTCGGGATAACAGTGCGAAAGCGCT
636 Trace·····················000000000000000000000000000000000000000000000000000000000000636 Trace·····················000000000000000000000000000000000000000000000000000000000000
  
Offset 832, 15 lines modifiedOffset 832, 15 lines modified
832 Trace·····················111832 Trace·····················111
  
  
833 ChimeraParentSelector»  chmraD13_S000004801_1-4690:4691-7682_S000437365»   YES»99.86[(S000004801,·NAST:455-4694,·ECO:101-996,·RawLen:913,·G:95.69,·L:100.00,·1.044);(S000437365,·NAST:4708-6814,·ECO:997-1503,·RawLen:521,·G:91.54,·L:99.62,·1.091)]833 ChimeraParentSelector»  chmraD13_S000004801_1-4690:4691-7682_S000437365»   YES»99.86[(S000004801,·NAST:455-4694,·ECO:101-996,·RawLen:913,·G:95.69,·L:100.00,·1.044);(S000437365,·NAST:4708-6814,·ECO:997-1503,·RawLen:521,·G:91.54,·L:99.62,·1.091)]
834 //834 //
835 ChimeraSlayer»  chmraD9_S000437007_1-4525:4526-7682_S000437299»    S000437007»  S000437299»1.0385»  100.00»    100» 0.9498»   91.46»      0»     YES»  NAST:4414-4415»    ECO:848-849835 ChimeraSlayer»  chmraD9_S000437007_1-4525:4526-7682_S000437299»    S000437007»  S000437299»1.0385»  100.00»    100» 0.9498»   91.46»      0»     YES»  NAST:4414-4415»    ECO:848-849
  
836 /build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl·--query_NAST·tmp.7467.query·--db_NAST·tmp.7467.db·--printAlignments·836 /build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl·--query_NAST·tmp.30428.query·--db_NAST·tmp.30428.db·--printAlignments·
837 -1·Eco··16·-V1············837 -1·Eco··16·-V1············
838 0·S000437007··············CTCAGAACGAACGCTGGCGGCAAGCTTAACACATGCAAGTCGAACGGATTGT-TCTCGTA838 0·S000437007··············CTCAGAACGAACGCTGGCGGCAAGCTTAACACATGCAAGTCGAACGGATTGT-TCTCGTA
839 1·S000437299··············CTCAGAACGAACGCTGGCGGCAAGCcTAACACATGCAAGTCGAACGGAcaaTtgCTtaTA839 1·S000437299··············CTCAGAACGAACGCTGGCGGCAAGCcTAACACATGCAAGTCGAACGGAcaaTtgCTtaTA
  
840 chmraD9_S000437007_1-4525·CTCAGAACGAACGCTGGCGGCAAGCTTAACACATGCAAGTCGAACGGATTGT-TCTCGTA840 chmraD9_S000437007_1-4525·CTCAGAACGAACGCTGGCGGCAAGCTTAACACATGCAAGTCGAACGGATTGT-TCTCGTA
841 Trace·····················000000000000000000000000000000000000000000000000000000000000841 Trace·····················000000000000000000000000000000000000000000000000000000000000
  
Offset 1027, 17 lines modifiedOffset 1027, 17 lines modified
  
1027 chmraD9_S000437007_1-4525·AGCTGGTGTGCTAACCGCAAGGAAGCAGCCATTTAAGGTTGGGTTAGTGACTAGGGTG1027 chmraD9_S000437007_1-4525·AGCTGGTGTGCTAACCGCAAGGAAGCAGCCATTTAAGGTTGGGTTAGTGACTAGGGTG
1028 Trace·····················11111111111111111111111111111111111111111111111111111111111028 Trace·····················1111111111111111111111111111111111111111111111111111111111
  
  
1029 ChimeraParentSelector»  chmraD9_S000437007_1-4525:4526-7682_S000437299»    YES» 100.00[(S000437007,·NAST:131-4657,·ECO:16-982,·RawLen:924,·G:96.19,·L:100.00,·1.040);(S000437299,·NAST:4658-6791,·ECO:983-1484,·RawLen:506,·G:94.94,·L:100.00,·1.053)]1029 ChimeraParentSelector»  chmraD9_S000437007_1-4525:4526-7682_S000437299»    YES» 100.00[(S000437007,·NAST:131-4657,·ECO:16-982,·RawLen:924,·G:96.19,·L:100.00,·1.040);(S000437299,·NAST:4658-6791,·ECO:983-1484,·RawLen:506,·G:94.94,·L:100.00,·1.053)]
1030 //1030 //
1031 ChimeraSlayer»  chmraD17_S000414109_1-4650:4651-7682_S000253432»   S000414109» S000253432»       1.0490» 99.78»    100» 0.8928»   84.92»      0»     YES»  NAST:4584-4586»    ECO:936-9371031 ChimeraSlayer»  chmraD17_S000414109_1-4650:4651-7682_S000253432»   S000414109» S000253432»       1.0490» 99.78»    100» 0.8928»   84.92»      0»     YES»  NAST:4521-4522»    ECO:900-901
  
1032 /build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl·--query_NAST·tmp.7467.query·--db_NAST·tmp.7467.db·--printAlignments·1032 /build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl·--query_NAST·tmp.30428.query·--db_NAST·tmp.30428.db·--printAlignments·
1033 -1·Eco··21·-V1············1033 -1·Eco··21·-V1············
1034 0·S000414109··············GACGAACGCTGGCGGCGTGCCTAACACATGCAAGTCGCGCGGGGG-GCTT-CGGCCCCCA1034 0·S000414109··············GACGAACGCTGGCGGCGTGCCTAACACATGCAAGTCGCGCGGGGG-GCTT-CGGCCCCCA
1035 1·S000253432··············GACGAACGCTGGCGGCagGCCTAACACATGCAAGTCGaaCGcatccttcgggat-g--ag1035 1·S000253432··············GACGAACGCTGGCGGCagGCCTAACACATGCAAGTCGaaCGcatccttcgggat-g--ag
  
1036 chmraD17_S000414109_1-465·GACGAACGCTGGCGGCGTGCCTAACACATGCAAGTCGCGCGGGGG-GCTT-CGGCCCCCA1036 chmraD17_S000414109_1-465·GACGAACGCTGGCGGCGTGCCTAACACATGCAAGTCGCGCGGGGG-GCTT-CGGCCCCCA
1037 Trace·····················0000000000000000000000000000000000000000000000000000000000001037 Trace·····················000000000000000000000000000000000000000000000000000000000000
  
Offset 1226, 15 lines modifiedOffset 1226, 15 lines modified
1226 Trace·····················1111111111111111111111111111111111111111111111111111226 Trace·····················111111111111111111111111111111111111111111111111111
  
  
1227 ChimeraParentSelector»  chmraD17_S000414109_1-4650:4651-7682_S000253432»   YES»99.50[(S000414109,·NAST:138-4671,·ECO:21-990,·RawLen:917,·G:94.48,·L:99.78,·1.053);(S000253432,·NAST:4673-6791,·ECO:991-1484,·RawLen:493,·G:88.74,·L:98.95,·1.121)]1227 ChimeraParentSelector»  chmraD17_S000414109_1-4650:4651-7682_S000253432»   YES»99.50[(S000414109,·NAST:138-4671,·ECO:21-990,·RawLen:917,·G:94.48,·L:99.78,·1.053);(S000253432,·NAST:4673-6791,·ECO:991-1484,·RawLen:493,·G:88.74,·L:98.95,·1.121)]
1228 //1228 //
1229 ChimeraSlayer»  chmraD22_7000004131502379_1-4625:4626-7682_7000004128198963»       7000004131502379»       7000004128198963»       1.0791» 100.00»   100»0.8529»  79.04»     0»    YES» NAST:4517-4520»   ECO:898-8991229 ChimeraSlayer»  chmraD22_7000004131502379_1-4625:4626-7682_7000004128198963»       7000004131502379»       7000004128198963»       1.0791» 100.00»   100»0.8529»  79.04»     0»    YES» NAST:4517-4520»   ECO:898-899
  
1230 /build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl·--query_NAST·tmp.7467.query·--db_NAST·tmp.7467.db·--printAlignments·1230 /build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl·--query_NAST·tmp.30428.query·--db_NAST·tmp.30428.db·--printAlignments·
1231 -1·Eco··21·-V1············1231 -1·Eco··21·-V1············
1232 0·7000004131502379········AACGAACGCTGGCGGCGCGTCTTAAGCATGCAAGTCGAACGGCAAGAGAGAAGCTTGCT-1232 0·7000004131502379········AACGAACGCTGGCGGCGCGTCTTAAGCATGCAAGTCGAACGGCAAGAGAGAAGCTTGCT-
1233 1·7000004128198963········AACtAACGCTGGCaGtGCGTCTTAAGCATGCAAGTCaAACGGgAt--G-tAg----caat1233 1·7000004128198963········AACtAACGCTGGCaGtGCGTCTTAAGCATGCAAGTCaAACGGgAt--G-tAg----caat
  
1234 chmraD22_7000004131502379·AACGAACGCTGGCGGCGCGTCTTAAGCATGCAAGTCGAACGGCAAGAGAGAAGCTTGCT-1234 chmraD22_7000004131502379·AACGAACGCTGGCGGCGCGTCTTAAGCATGCAAGTCGAACGGCAAGAGAGAAGCTTGCT-
1235 Trace·····················0000000000000000000000000000000000000000000000000000000000001235 Trace·····················000000000000000000000000000000000000000000000000000000000000
  
Offset 1439, 15 lines modifiedOffset 1439, 15 lines modified
1439 Trace·····················111111111111111111111439 Trace·····················11111111111111111111
  
  
1440 ChimeraParentSelector»  chmraD22_7000004131502379_1-4625:4626-7682_7000004128198963»       YES»    99.93[(7000004131502379,·NAST:138-4623,·ECO:21-959,·RawLen:942,·G:92.22,·L:100.00,·1.084);(7000004128198963,·NAST:4625-6821,·ECO:961-1503,·RawLen:554,·G:85.26,·L:99.82,·1.172)]1440 ChimeraParentSelector»  chmraD22_7000004131502379_1-4625:4626-7682_7000004128198963»       YES»    99.93[(7000004131502379,·NAST:138-4623,·ECO:21-959,·RawLen:942,·G:92.22,·L:100.00,·1.084);(7000004128198963,·NAST:4625-6821,·ECO:961-1503,·RawLen:554,·G:85.26,·L:99.82,·1.172)]
1441 //1441 //
1442 ChimeraSlayer»  chmraD8_S000004272_1-3794:3795-7682_S000503167»    S000503167»  S000004272»0.9648»  93.34»     0»    1.0337»      100.00»100»     YES»  NAST:3784-3785»    ECO:670-6711442 ChimeraSlayer»  chmraD8_S000004272_1-3794:3795-7682_S000503167»    S000503167»  S000004272»0.9648»  93.34»     0»    1.0337»      100.00»100»     YES»  NAST:3784-3785»    ECO:670-671
  
1443 /build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl·--query_NAST·tmp.7467.query·--db_NAST·tmp.7467.db·--printAlignments·1443 /build/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl·--query_NAST·tmp.30428.query·--db_NAST·tmp.30428.db·--printAlignments·
1444 -1·Eco··13·-V1············1444 -1·Eco··13·-V1············
1445 0·S000503167··············TGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAGCGGtAaC-aGGAg1445 0·S000503167··············TGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAGCGGtAaC-aGGAg
1446 1·S000004272··············TGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAGCGGCAGCgG-GAA1446 1·S000004272··············TGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAGCGGCAGCgG-GAA
  
1447 chmraD8_S000004272_1-3794·TGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAGCGGCAGC-GGGAA1447 chmraD8_S000004272_1-3794·TGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAGCGGCAGC-GGGAA
1448 Trace·····················1111111111111111111111111111111111111111111111111111111111111448 Trace·····················111111111111111111111111111111111111111111111111111111111111
  
Offset 1644, 15 lines modifiedOffset 1644, 15 lines modified
1644 Trace·····················00000000000000000000000000001644 Trace·····················0000000000000000000000000000
  
Max diff block lines reached; 2318/12025 bytes (19.28%) of diff not shown.
⊟
2.29 KB
./usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/chims.NAST.CPS.CPC.gz
⊟
2.14 KB
chims.NAST.CPS.CPC
    
Offset 234, 35 lines modifiedOffset 234, 35 lines modified
  
234 !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!234 !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
235 CCATAGTCTCAGCGGTGTCGGGCGTGGGTGGTGTATGTTCGGCATCGGCCTGC··A:·S000437007235 CCATAGTCTCAGCGGTGTCGGGCGTGGGTGGTGTATGTTCGGCATCGGCCTGC··A:·S000437007
236 TTGCGTCTCTGAGTACACTAAATCCAAACAACACGGACCTTATGCTATTTCAT··Q:·chmraD9_S000437007_1-4525:4526-7682_S000437299236 TTGCGTCTCTGAGTACACTAAATCCAAACAACACGGACCTTATGCTATTTCAT··Q:·chmraD9_S000437007_1-4525:4526-7682_S000437299
237 TTGCGTCTCTGAGTACACTAAATCCAAACAACACGGACCTTATGCTATTTCAT··B:·S000437299237 TTGCGTCTCTGAGTACACTAAATCCAAACAACACGGACCTTATGCTATTTCAT··B:·S000437299
238 ·····················································238 ·····················································
  
239 ChimeraSlayer»  chmraD17_S000414109_1-4650:4651-7682_S000253432»   S000414109» S000253432»       1.0490» 99.78»    100» 0.8928»   84.92»      0»     YES»  NAST:4584-4586»    ECO:936-937239 ChimeraSlayer»  chmraD17_S000414109_1-4650:4651-7682_S000253432»   S000414109» S000253432»       1.0490» 99.78»    100» 0.8928»   84.92»      0»     YES»  NAST:4521-4522»    ECO:900-901
240 ············Per_id·parents:·84.70240 ············Per_id·parents:·84.70
  
241 ···········Per_id(Q,A):·95.12241 ···········Per_id(Q,A):·95.12
242 ---------------------------------------------------·A:·S000414109242 ---------------------------------------------------·A:·S000414109
243 ·99.88································87.45243 ·99.88································88.25
244 ~~~~~~~~~~~~~~~~~~~~~~~~\·/~~~~~~~~~~~~~~~~~~~~~~~~·Q:·chmraD17_S000414109_1-4650:4651-7682_S000253432244 ~~~~~~~~~~~~~~~~~~~~~~~~\·/~~~~~~~~~~~~~~~~~~~~~~~~·Q:·chmraD17_S000414109_1-4650:4651-7682_S000253432
245 DivR:·1.049·BS:·100.00·····|245 DivR:·1.049·BS:·100.00·····|
246 Per_id(QLA,QRB):·99.78···|246 Per_id(QLA,QRB):·99.78···|
247 ·························|247 ·························|
248 ···(L-AB:·83.23)·········|······(R-AB:·87.07)248 ···(L-AB:·82.50)·········|······(R-AB:·87.88)
249 ···WinL:0-834············|······WinR:835-1352249 ···WinL:0-799············|······WinR:800-1352
250 ·························|250 ·························|
251 Per_id(QLB,QRA):·84.92···|251 Per_id(QLB,QRA):·84.92···|
252 DivR:·0.893·BS:·0.00····|252 DivR:·0.893·BS:·0.00····|
253 ~~~~~~~~~~~~~~~~~~~~~~~~/·\~~~~~~~~~~~~~~~~~~~~~~~~~·Q:·chmraD17_S000414109_1-4650:4651-7682_S000253432253 ~~~~~~~~~~~~~~~~~~~~~~~~/·\~~~~~~~~~~~~~~~~~~~~~~~~~·Q:·chmraD17_S000414109_1-4650:4651-7682_S000253432
254 ·83.35································99.61254 ·82.62································99.64
255 ----------------------------------------------------·B:·S000253432255 ----------------------------------------------------·B:·S000253432
256 ············Per_id(Q,B):·89.58256 ············Per_id(Q,B):·89.58
  
257 DeltaL:·16.53···················DeltaR:·-12.16257 DeltaL:·17.25···················DeltaR:·-11.39
  
258 ····························································258 ····························································
259 GTCGGGGGGCTTCGGCCACGGGAGTCGAGGGGCCGCGGCGGCCGACCAGCGCGTCGGTCC··A:·S000414109259 GTCGGGGGGCTTCGGCCACGGGAGTCGAGGGGCCGCGGCGGCCGACCAGCGCGTCGGTCC··A:·S000414109
260 GTCGGGGGGCTTCGGCCACGGGAGTCGAGGGGCCGCGGCGGCCGACCAGCGCGTCGGTCC··Q:·chmraD17_S000414109_1-4650:4651-7682_S000253432260 GTCGGGGGGCTTCGGCCACGGGAGTCGAGGGGCCGCGGCGGCCGACCAGCGCGTCGGTCC··Q:·chmraD17_S000414109_1-4650:4651-7682_S000253432
261 AGAACATCTTCGGATGAGTCAAGACTTGAACATTTGAATACTTCGGAGAATTTCAATCTT··B:·S000253432261 AGAACATCTTCGGATGAGTCAAGACTTGAACATTTGAATACTTCGGAGAATTTCAATCTT··B:·S000253432
262 !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!262 !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
  
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2.68 KB
./usr/share/doc/microbiomeutil-data/examples/ChimeraSlayer/chims.NAST.CPS.CPC.wTaxons.gz
⊟
2.51 KB
chims.NAST.CPS.CPC.wTaxons
    
Offset 234, 35 lines modifiedOffset 234, 35 lines modified
  
234 !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!234 !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
235 CCATAGTCTCAGCGGTGTCGGGCGTGGGTGGTGTATGTTCGGCATCGGCCTGC··A:·S000437007235 CCATAGTCTCAGCGGTGTCGGGCGTGGGTGGTGTATGTTCGGCATCGGCCTGC··A:·S000437007
236 TTGCGTCTCTGAGTACACTAAATCCAAACAACACGGACCTTATGCTATTTCAT··Q:·chmraD9_S000437007_1-4525:4526-7682_S000437299236 TTGCGTCTCTGAGTACACTAAATCCAAACAACACGGACCTTATGCTATTTCAT··Q:·chmraD9_S000437007_1-4525:4526-7682_S000437299
237 TTGCGTCTCTGAGTACACTAAATCCAAACAACACGGACCTTATGCTATTTCAT··B:·S000437299237 TTGCGTCTCTGAGTACACTAAATCCAAACAACACGGACCTTATGCTATTTCAT··B:·S000437299
238 ·····················································238 ·····················································
  
239 ChimeraSlayer»  chmraD17_S000414109_1-4650:4651-7682_S000253432»   S000414109» S000253432»       1.0490» 99.78»    100» 0.8928»   84.92»      0»     YES»  NAST:4584-4586»    ECO:936-937» Craurococcus»     Craurococcus·roseus·(T);·NS130;·D85828·Craurococcus·roseus» Rhodospirillum»   Rhodospirillum·photometricum·(T);·DSM·122T;·AJ222662·Rhodospirillum·photometricum» INTRA-ORDER239 ChimeraSlayer»  chmraD17_S000414109_1-4650:4651-7682_S000253432»   S000414109» S000253432»       1.0490» 99.78»    100» 0.8928»   84.92»      0»     YES»  NAST:4521-4522»    ECO:900-901» Craurococcus»     Craurococcus·roseus·(T);·NS130;·D85828·Craurococcus·roseus» Rhodospirillum»   Rhodospirillum·photometricum·(T);·DSM·122T;·AJ222662·Rhodospirillum·photometricum» INTRA-ORDER
240 ············Per_id·parents:·84.70240 ············Per_id·parents:·84.70
  
241 ···········Per_id(Q,A):·95.12241 ···········Per_id(Q,A):·95.12
242 ---------------------------------------------------·A:·S000414109242 ---------------------------------------------------·A:·S000414109
243 ·99.88································87.45243 ·99.88································88.25
244 ~~~~~~~~~~~~~~~~~~~~~~~~\·/~~~~~~~~~~~~~~~~~~~~~~~~·Q:·chmraD17_S000414109_1-4650:4651-7682_S000253432244 ~~~~~~~~~~~~~~~~~~~~~~~~\·/~~~~~~~~~~~~~~~~~~~~~~~~·Q:·chmraD17_S000414109_1-4650:4651-7682_S000253432
245 DivR:·1.049·BS:·100.00·····|245 DivR:·1.049·BS:·100.00·····|
246 Per_id(QLA,QRB):·99.78···|246 Per_id(QLA,QRB):·99.78···|
247 ·························|247 ·························|
248 ···(L-AB:·83.23)·········|······(R-AB:·87.07)248 ···(L-AB:·82.50)·········|······(R-AB:·87.88)
249 ···WinL:0-834············|······WinR:835-1352249 ···WinL:0-799············|······WinR:800-1352
250 ·························|250 ·························|
251 Per_id(QLB,QRA):·84.92···|251 Per_id(QLB,QRA):·84.92···|
252 DivR:·0.893·BS:·0.00····|252 DivR:·0.893·BS:·0.00····|
253 ~~~~~~~~~~~~~~~~~~~~~~~~/·\~~~~~~~~~~~~~~~~~~~~~~~~~·Q:·chmraD17_S000414109_1-4650:4651-7682_S000253432253 ~~~~~~~~~~~~~~~~~~~~~~~~/·\~~~~~~~~~~~~~~~~~~~~~~~~~·Q:·chmraD17_S000414109_1-4650:4651-7682_S000253432
254 ·83.35································99.61254 ·82.62································99.64
255 ----------------------------------------------------·B:·S000253432255 ----------------------------------------------------·B:·S000253432
256 ············Per_id(Q,B):·89.58256 ············Per_id(Q,B):·89.58
  
257 DeltaL:·16.53···················DeltaR:·-12.16257 DeltaL:·17.25···················DeltaR:·-11.39
  
258 ····························································258 ····························································
259 GTCGGGGGGCTTCGGCCACGGGAGTCGAGGGGCCGCGGCGGCCGACCAGCGCGTCGGTCC··A:·S000414109259 GTCGGGGGGCTTCGGCCACGGGAGTCGAGGGGCCGCGGCGGCCGACCAGCGCGTCGGTCC··A:·S000414109
260 GTCGGGGGGCTTCGGCCACGGGAGTCGAGGGGCCGCGGCGGCCGACCAGCGCGTCGGTCC··Q:·chmraD17_S000414109_1-4650:4651-7682_S000253432260 GTCGGGGGGCTTCGGCCACGGGAGTCGAGGGGCCGCGGCGGCCGACCAGCGCGTCGGTCC··Q:·chmraD17_S000414109_1-4650:4651-7682_S000253432
261 AGAACATCTTCGGATGAGTCAAGACTTGAACATTTGAATACTTCGGAGAATTTCAATCTT··B:·S000253432261 AGAACATCTTCGGATGAGTCAAGACTTGAACATTTGAATACTTCGGAGAATTTCAATCTT··B:·S000253432
262 !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!262 !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
  
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./usr/share/microbiomeutil-data/RESOURCES/rRNA16S.gold.fasta.nin
    
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00000000:·0000·0004·0000·0000·0000·001c·5245·534f··............RESO00000000:·0000·0004·0000·0000·0000·001c·5245·534f··............RESO
00000010:·5552·4345·532f·7252·4e41·3136·532e·676f··URCES/rRNA16S.go00000010:·5552·4345·532f·7252·4e41·3136·532e·676f··URCES/rRNA16S.go
00000020:·6c64·2e66·6173·7461·0000·0018·4175·6720··ld.fasta....Aug·00000020:·6c64·2e66·6173·7461·0000·0018·4a75·6c20··ld.fasta....Jul·
00000030:·3135·2c20·3230·3231·2020·363a·3438·2041··15,·2021··6:48·A00000030:·3134·2c20·3230·3230·2020·323a·3238·2041··14,·2020··2:28·A
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00000050:·0000·0677·0000·0000·0000·0182·0000·0309··...w............00000050:·0000·0677·0000·0000·0000·0182·0000·0309··...w............
00000060:·0000·04be·0000·0645·0000·07d7·0000·096a··.......E.......j00000060:·0000·04be·0000·0645·0000·07d7·0000·096a··.......E.......j
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00000080:·0000·114b·0000·12db·0000·1460·0000·1609··...K.......`....00000080:·0000·114b·0000·12db·0000·1460·0000·1609··...K.......`....
00000090:·0000·179e·0000·191f·0000·1a94·0000·1c68··...............h00000090:·0000·179e·0000·191f·0000·1a94·0000·1c68··...............h
000000a0:·0000·1e03·0000·1f86·0000·211f·0000·2287··..........!...".000000a0:·0000·1e03·0000·1f86·0000·211f·0000·2287··..........!...".
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