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3 ..·code::·none3 ..·code::·none
  
4 »       These·are·Brian·scripts·corresponding·to·the·following·paper:4 »       These·are·Brian·scripts·corresponding·to·the·following·paper:
5 »       5 »       
6 »       Brette·R·(2013).·Sharpness·of·spike·initiation·in·neurons·explained·by·compartmentalization.6 »       Brette·R·(2013).·Sharpness·of·spike·initiation·in·neurons·explained·by·compartmentalization.
7 »       PLoS·Comp·Biol,·doi:·10.1371/journal.pcbi.1003338.7 »       PLoS·Comp·Biol,·doi:·10.1371/journal.pcbi.1003338.
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5 »       5 »       
6 »       Modeling·neuron-glia·interactions·with·the·Brian·2·simulator6 »       Modeling·neuron-glia·interactions·with·the·Brian·2·simulator
7 »       Marcel·Stimberg,·Dan·F.·M.·Goodman,·Romain·Brette,·Maurizio·De·Pittà7 »       Marcel·Stimberg,·Dan·F.·M.·Goodman,·Romain·Brette,·Maurizio·De·Pittà
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1 figures.mplstyle1 figures.mplstyle
2 =====================2 ======================
  
3 ..·code::·none3 ..·code::·none
  
4 »       axes.linewidth·:·14 »       axes.linewidth·:·1
5 »       xtick.labelsize·:·85 »       xtick.labelsize·:·8
6 »       ytick.labelsize·:·86 »       ytick.labelsize·:·8
7 »       axes.labelsize·:·87 »       axes.labelsize·:·8
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6 (*Shortest·import*:·``from·brian2·import·Clock)``6 (*Shortest·import*:·``from·brian2·import·Clock)``
  
7 ..·autoclass::·Clock7 ..·autoclass::·Clock
  
8 Tutorials·and·examples·using·this8 Tutorials·and·examples·using·this
9 ---------------------------------9 ---------------------------------
  
10 *·Example·:doc:`CUBA·</examples/CUBA>` 
11 *·Example·:doc:`COBAHH·</examples/COBAHH>`10 *·Example·:doc:`COBAHH·</examples/COBAHH>`
 11 *·Example·:doc:`CUBA·</examples/CUBA>`
  
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6 (*Shortest·import*:·``from·brian2.core.functions·import·exprel)``6 (*Shortest·import*:·``from·brian2.core.functions·import·exprel)``
  
7 ..·autoclass::·exprel7 ..·autoclass::·exprel
  
8 Tutorials·and·examples·using·this8 Tutorials·and·examples·using·this
9 ---------------------------------9 ---------------------------------
  
10 *·Example·:doc:`IF_curve_Hodgkin_Huxley·</examples/IF_curve_Hodgkin_Huxley>` 
11 *·Example·:doc:`COBAHH·</examples/COBAHH>`10 *·Example·:doc:`COBAHH·</examples/COBAHH>`
 11 *·Example·:doc:`IF_curve_Hodgkin_Huxley·</examples/IF_curve_Hodgkin_Huxley>`
12 *·Example·:doc:`advanced/float_32_64_benchmark·</examples/advanced.float_32_64_benchmark>` 
13 *·Example·:doc:`advanced/exprel_function·</examples/advanced.exprel_function>` 
14 *·Example·:doc:`frompapers/Wang_Buszaki_1996·</examples/frompapers.Wang_Buszaki_1996>`12 *·Example·:doc:`frompapers/Wang_Buszaki_1996·</examples/frompapers.Wang_Buszaki_1996>`
15 *·Example·:doc:`compartmental/lfp·</examples/compartmental.lfp>`13 *·Example·:doc:`compartmental/lfp·</examples/compartmental.lfp>`
16 *·Example·:doc:`compartmental/hodgkin_huxley_1952·</examples/compartmental.hodgkin_huxley_1952>` 
17 *·Example·:doc:`compartmental/hh_with_spikes·</examples/compartmental.hh_with_spikes>`14 *·Example·:doc:`compartmental/hh_with_spikes·</examples/compartmental.hh_with_spikes>`
 15 *·Example·:doc:`compartmental/hodgkin_huxley_1952·</examples/compartmental.hodgkin_huxley_1952>`
 16 *·Example·:doc:`advanced/exprel_function·</examples/advanced.exprel_function>`
 17 *·Example·:doc:`advanced/float_32_64_benchmark·</examples/advanced.float_32_64_benchmark>`
  
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9 Tutorials·and·examples·using·this9 Tutorials·and·examples·using·this
10 ---------------------------------10 ---------------------------------
  
11 *·Tutorial·:doc:`3-intro-to-brian-simulations·</resources/tutorials/3-intro-to-brian-simulations>`11 *·Tutorial·:doc:`3-intro-to-brian-simulations·</resources/tutorials/3-intro-to-brian-simulations>`
12 *·Example·:doc:`IF_curve_LIF·</examples/IF_curve_LIF>`12 *·Example·:doc:`IF_curve_LIF·</examples/IF_curve_LIF>`
13 *·Example·:doc:`IF_curve_Hodgkin_Huxley·</examples/IF_curve_Hodgkin_Huxley>`13 *·Example·:doc:`IF_curve_Hodgkin_Huxley·</examples/IF_curve_Hodgkin_Huxley>`
 14 *·Example·:doc:`frompapers/Brunel_Wang_2001·</examples/frompapers.Brunel_Wang_2001>`
14 *·Example·:doc:`advanced/stochastic_odes·</examples/advanced.stochastic_odes>`15 *·Example·:doc:`advanced/stochastic_odes·</examples/advanced.stochastic_odes>`
15 *·Example·:doc:`advanced/compare_GSL_to_conventional·</examples/advanced.compare_GSL_to_conventional>`16 *·Example·:doc:`advanced/compare_GSL_to_conventional·</examples/advanced.compare_GSL_to_conventional>`
16 *·Example·:doc:`frompapers/Brunel_Wang_2001·</examples/frompapers.Brunel_Wang_2001>` 
  
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6 (*Shortest·import*:·``from·brian2.devices.device·import·Dummy)``6 (*Shortest·import*:·``from·brian2.devices.device·import·Dummy)``
  
7 ..·autoclass::·Dummy7 ..·autoclass::·Dummy
  
8 Tutorials·and·examples·using·this8 Tutorials·and·examples·using·this
9 ---------------------------------9 ---------------------------------
  
10 *·Example·:doc:`advanced/exprel_function·</examples/advanced.exprel_function>` 
11 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte·</examples/frompapers.Stimberg_et_al_2018.example_2_gchi_astrocyte>`10 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte·</examples/frompapers.Stimberg_et_al_2018.example_2_gchi_astrocyte>`
 11 *·Example·:doc:`advanced/exprel_function·</examples/advanced.exprel_function>`
  
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6 (*Shortest·import*:·``from·brian2·import·Equations)``6 (*Shortest·import*:·``from·brian2·import·Equations)``
  
7 ..·autoclass::·Equations7 ..·autoclass::·Equations
  
8 Tutorials·and·examples·using·this8 Tutorials·and·examples·using·this
9 ---------------------------------9 ---------------------------------
  
10 *·Example·:doc:`IF_curve_Hodgkin_Huxley·</examples/IF_curve_Hodgkin_Huxley>` 
11 *·Example·:doc:`COBAHH·</examples/COBAHH>`10 *·Example·:doc:`COBAHH·</examples/COBAHH>`
 11 *·Example·:doc:`IF_curve_Hodgkin_Huxley·</examples/IF_curve_Hodgkin_Huxley>`
12 *·Example·:doc:`advanced/float_32_64_benchmark·</examples/advanced.float_32_64_benchmark>` 
13 *·Example·:doc:`frompapers/Rossant_et_al_2011bis·</examples/frompapers.Rossant_et_al_2011bis>` 
14 *·Example·:doc:`frompapers/Destexhe_et_al_1998·</examples/frompapers.Destexhe_et_al_1998>`12 *·Example·:doc:`frompapers/Destexhe_et_al_1998·</examples/frompapers.Destexhe_et_al_1998>`
 13 *·Example·:doc:`frompapers/Rossant_et_al_2011bis·</examples/frompapers.Rossant_et_al_2011bis>`
15 *·Example·:doc:`frompapers/Diesmann_et_al_1999·</examples/frompapers.Diesmann_et_al_1999>`14 *·Example·:doc:`frompapers/Diesmann_et_al_1999·</examples/frompapers.Diesmann_et_al_1999>`
 15 *·Example·:doc:`frompapers/Clopath_et_al_2010_homeostasis·</examples/frompapers.Clopath_et_al_2010_homeostasis>`
16 *·Example·:doc:`frompapers/Hindmarsh_Rose_1984·</examples/frompapers.Hindmarsh_Rose_1984>`16 *·Example·:doc:`frompapers/Hindmarsh_Rose_1984·</examples/frompapers.Hindmarsh_Rose_1984>`
17 *·Example·:doc:`frompapers/Clopath_et_al_2010_no_homeostasis·</examples/frompapers.Clopath_et_al_2010_no_homeostasis>`17 *·Example·:doc:`frompapers/Clopath_et_al_2010_no_homeostasis·</examples/frompapers.Clopath_et_al_2010_no_homeostasis>`
18 *·Example·:doc:`frompapers/Clopath_et_al_2010_homeostasis·</examples/frompapers.Clopath_et_al_2010_homeostasis>`18 *·Example·:doc:`advanced/float_32_64_benchmark·</examples/advanced.float_32_64_benchmark>`
  
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6 (*Shortest·import*:·``from·brian2·import·NeuronGroup)``6 (*Shortest·import*:·``from·brian2·import·NeuronGroup)``
  
7 ..·autoclass::·NeuronGroup7 ..·autoclass::·NeuronGroup
  
8 Tutorials·and·examples·using·this8 Tutorials·and·examples·using·this
9 ---------------------------------9 ---------------------------------
  
 10 *·Tutorial·:doc:`3-intro-to-brian-simulations·</resources/tutorials/3-intro-to-brian-simulations>`
10 *·Tutorial·:doc:`1-intro-to-brian-neurons·</resources/tutorials/1-intro-to-brian-neurons>`11 *·Tutorial·:doc:`1-intro-to-brian-neurons·</resources/tutorials/1-intro-to-brian-neurons>`
11 *·Tutorial·:doc:`2-intro-to-brian-synapses·</resources/tutorials/2-intro-to-brian-synapses>`12 *·Tutorial·:doc:`2-intro-to-brian-synapses·</resources/tutorials/2-intro-to-brian-synapses>`
12 *·Tutorial·:doc:`3-intro-to-brian-simulations·</resources/tutorials/3-intro-to-brian-simulations>` 
13 *·Example·:doc:`IF_curve_LIF·</examples/IF_curve_LIF>` 
14 *·Example·:doc:`adaptive_threshold·</examples/adaptive_threshold>`13 *·Example·:doc:`reliability·</examples/reliability>`
 14 *·Example·:doc:`COBAHH·</examples/COBAHH>`
 15 *·Example·:doc:`non_reliability·</examples/non_reliability>`
15 *·Example·:doc:`phase_locking·</examples/phase_locking>`16 *·Example·:doc:`phase_locking·</examples/phase_locking>`
16 *·Example·:doc:`CUBA·</examples/CUBA>`17 *·Example·:doc:`CUBA·</examples/CUBA>`
 18 *·Example·:doc:`adaptive_threshold·</examples/adaptive_threshold>`
 19 *·Example·:doc:`IF_curve_LIF·</examples/IF_curve_LIF>`
17 *·Example·:doc:`IF_curve_Hodgkin_Huxley·</examples/IF_curve_Hodgkin_Huxley>`20 *·Example·:doc:`IF_curve_Hodgkin_Huxley·</examples/IF_curve_Hodgkin_Huxley>`
18 *·Example·:doc:`non_reliability·</examples/non_reliability>` 
19 *·Example·:doc:`reliability·</examples/reliability>` 
20 *·Example·:doc:`COBAHH·</examples/COBAHH>` 
21 *·Example·:doc:`advanced/custom_events·</examples/advanced.custom_events>` 
22 *·Example·:doc:`advanced/float_32_64_benchmark·</examples/advanced.float_32_64_benchmark>` 
23 *·Example·:doc:`advanced/stochastic_odes·</examples/advanced.stochastic_odes>` 
24 *·Example·:doc:`advanced/opencv_movie·</examples/advanced.opencv_movie>` 
25 *·Example·:doc:`advanced/exprel_function·</examples/advanced.exprel_function>` 
26 *·Example·:doc:`advanced/compare_GSL_to_conventional·</examples/advanced.compare_GSL_to_conventional>`21 *·Example·:doc:`standalone/STDP_standalone·</examples/standalone.STDP_standalone>`
 22 *·Example·:doc:`standalone/cuba_openmp·</examples/standalone.cuba_openmp>`
 23 *·Example·:doc:`synapses/synapses·</examples/synapses.synapses>`
 24 *·Example·:doc:`synapses/jeffress·</examples/synapses.jeffress>`
 25 *·Example·:doc:`synapses/gapjunctions·</examples/synapses.gapjunctions>`
 26 *·Example·:doc:`synapses/spatial_connections·</examples/synapses.spatial_connections>`
 27 *·Example·:doc:`synapses/licklider·</examples/synapses.licklider>`
 28 *·Example·:doc:`synapses/efficient_gaussian_connectivity·</examples/synapses.efficient_gaussian_connectivity>`
 29 *·Example·:doc:`synapses/STDP·</examples/synapses.STDP>`
 30 *·Example·:doc:`synapses/state_variables·</examples/synapses.state_variables>`
 31 *·Example·:doc:`synapses/nonlinear·</examples/synapses.nonlinear>`
 32 *·Example·:doc:`frompapers/Rothman_Manis_2003·</examples/frompapers.Rothman_Manis_2003>`
27 *·Example·:doc:`frompapers/Brette_2004·</examples/frompapers.Brette_2004>`33 *·Example·:doc:`frompapers/Brette_2004·</examples/frompapers.Brette_2004>`
 34 *·Example·:doc:`frompapers/Vogels_et_al_2011·</examples/frompapers.Vogels_et_al_2011>`
28 *·Example·:doc:`frompapers/Wang_Buszaki_1996·</examples/frompapers.Wang_Buszaki_1996>`35 *·Example·:doc:`frompapers/Brunel_Hakim_1999·</examples/frompapers.Brunel_Hakim_1999>`
29 *·Example·:doc:`frompapers/Rossant_et_al_2011bis·</examples/frompapers.Rossant_et_al_2011bis>`36 *·Example·:doc:`frompapers/Rossant_et_al_2011bis·</examples/frompapers.Rossant_et_al_2011bis>`
30 *·Example·:doc:`frompapers/Kremer_et_al_2011_barrel_cortex·</examples/frompapers.Kremer_et_al_2011_barrel_cortex>` 
31 *·Example·:doc:`frompapers/Brunel_Wang_2001·</examples/frompapers.Brunel_Wang_2001>` 
32 *·Example·:doc:`frompapers/Diesmann_et_al_1999·</examples/frompapers.Diesmann_et_al_1999>` 
33 *·Example·:doc:`frompapers/Hindmarsh_Rose_1984·</examples/frompapers.Hindmarsh_Rose_1984>` 
34 *·Example·:doc:`frompapers/Brette_Gerstner_2005·</examples/frompapers.Brette_Gerstner_2005>` 
35 *·Example·:doc:`frompapers/Platkiewicz_Brette_2011·</examples/frompapers.Platkiewicz_Brette_2011>` 
36 *·Example·:doc:`frompapers/Rothman_Manis_2003·</examples/frompapers.Rothman_Manis_2003>` 
37 *·Example·:doc:`frompapers/Clopath_et_al_2010_no_homeostasis·</examples/frompapers.Clopath_et_al_2010_no_homeostasis>` 
38 *·Example·:doc:`frompapers/Morris_Lecar_1981·</examples/frompapers.Morris_Lecar_1981>`37 *·Example·:doc:`frompapers/Morris_Lecar_1981·</examples/frompapers.Morris_Lecar_1981>`
39 *·Example·:doc:`frompapers/Brette_Guigon_2003·</examples/frompapers.Brette_Guigon_2003>` 
40 *·Example·:doc:`frompapers/Brunel_Hakim_1999·</examples/frompapers.Brunel_Hakim_1999>`38 *·Example·:doc:`frompapers/Diesmann_et_al_1999·</examples/frompapers.Diesmann_et_al_1999>`
41 *·Example·:doc:`frompapers/Izhikevich_2007·</examples/frompapers.Izhikevich_2007>` 
42 *·Example·:doc:`frompapers/Sturzl_et_al_2000·</examples/frompapers.Sturzl_et_al_2000>`39 *·Example·:doc:`frompapers/Sturzl_et_al_2000·</examples/frompapers.Sturzl_et_al_2000>`
 40 *·Example·:doc:`frompapers/Brette_Gerstner_2005·</examples/frompapers.Brette_Gerstner_2005>`
 41 *·Example·:doc:`frompapers/Wang_Buszaki_1996·</examples/frompapers.Wang_Buszaki_1996>`
 42 *·Example·:doc:`frompapers/Brunel_Wang_2001·</examples/frompapers.Brunel_Wang_2001>`
43 *·Example·:doc:`frompapers/Clopath_et_al_2010_homeostasis·</examples/frompapers.Clopath_et_al_2010_homeostasis>`43 *·Example·:doc:`frompapers/Clopath_et_al_2010_homeostasis·</examples/frompapers.Clopath_et_al_2010_homeostasis>`
44 *·Example·:doc:`frompapers/Touboul_Brette_2008·</examples/frompapers.Touboul_Brette_2008>`44 *·Example·:doc:`frompapers/Touboul_Brette_2008·</examples/frompapers.Touboul_Brette_2008>`
 45 *·Example·:doc:`frompapers/Kremer_et_al_2011_barrel_cortex·</examples/frompapers.Kremer_et_al_2011_barrel_cortex>`
 46 *·Example·:doc:`frompapers/Brette_Guigon_2003·</examples/frompapers.Brette_Guigon_2003>`
 47 *·Example·:doc:`frompapers/Hindmarsh_Rose_1984·</examples/frompapers.Hindmarsh_Rose_1984>`
 48 *·Example·:doc:`frompapers/Izhikevich_2007·</examples/frompapers.Izhikevich_2007>`
45 *·Example·:doc:`frompapers/Vogels_et_al_2011·</examples/frompapers.Vogels_et_al_2011>`49 *·Example·:doc:`frompapers/Platkiewicz_Brette_2011·</examples/frompapers.Platkiewicz_Brette_2011>`
 50 *·Example·:doc:`frompapers/Clopath_et_al_2010_no_homeostasis·</examples/frompapers.Clopath_et_al_2010_no_homeostasis>`
46 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte·</examples/frompapers.Stimberg_et_al_2018.example_2_gchi_astrocyte>` 
47 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_1_COBA·</examples/frompapers.Stimberg_et_al_2018.example_1_COBA>` 
48 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_5_astro_ring·</examples/frompapers.Stimberg_et_al_2018.example_5_astro_ring>` 
49 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro·</examples/frompapers.Stimberg_et_al_2018.example_6_COBA_with_astro>` 
50 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_4_synrel·</examples/frompapers.Stimberg_et_al_2018.example_4_synrel>` 
51 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_4_rsmean·</examples/frompapers.Stimberg_et_al_2018.example_4_rsmean>`51 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_4_rsmean·</examples/frompapers.Stimberg_et_al_2018.example_4_rsmean>`
52 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_3_io_synapse·</examples/frompapers.Stimberg_et_al_2018.example_3_io_synapse>`52 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_3_io_synapse·</examples/frompapers.Stimberg_et_al_2018.example_3_io_synapse>`
 53 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_4_synrel·</examples/frompapers.Stimberg_et_al_2018.example_4_synrel>`
 54 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro·</examples/frompapers.Stimberg_et_al_2018.example_6_COBA_with_astro>`
 55 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_1_COBA·</examples/frompapers.Stimberg_et_al_2018.example_1_COBA>`
 56 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_5_astro_ring·</examples/frompapers.Stimberg_et_al_2018.example_5_astro_ring>`
 57 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte·</examples/frompapers.Stimberg_et_al_2018.example_2_gchi_astrocyte>`
53 *·Example·:doc:`synapses/nonlinear·</examples/synapses.nonlinear>` 
54 *·Example·:doc:`synapses/gapjunctions·</examples/synapses.gapjunctions>` 
55 *·Example·:doc:`synapses/efficient_gaussian_connectivity·</examples/synapses.efficient_gaussian_connectivity>` 
56 *·Example·:doc:`synapses/synapses·</examples/synapses.synapses>` 
57 *·Example·:doc:`synapses/STDP·</examples/synapses.STDP>` 
58 *·Example·:doc:`synapses/licklider·</examples/synapses.licklider>` 
59 *·Example·:doc:`synapses/jeffress·</examples/synapses.jeffress>` 
60 *·Example·:doc:`synapses/state_variables·</examples/synapses.state_variables>` 
61 *·Example·:doc:`synapses/spatial_connections·</examples/synapses.spatial_connections>` 
62 *·Example·:doc:`standalone/cuba_openmp·</examples/standalone.cuba_openmp>` 
63 *·Example·:doc:`standalone/STDP_standalone·</examples/standalone.STDP_standalone>` 
64 *·Example·:doc:`compartmental/lfp·</examples/compartmental.lfp>`58 *·Example·:doc:`compartmental/lfp·</examples/compartmental.lfp>`
65 *·Example·:doc:`compartmental/bipolar_with_inputs2·</examples/compartmental.bipolar_with_inputs2>`59 *·Example·:doc:`compartmental/bipolar_with_inputs2·</examples/compartmental.bipolar_with_inputs2>`
66 *·Example·:doc:`compartmental/bipolar_with_inputs·</examples/compartmental.bipolar_with_inputs>`60 *·Example·:doc:`compartmental/bipolar_with_inputs·</examples/compartmental.bipolar_with_inputs>`
 61 *·Example·:doc:`advanced/exprel_function·</examples/advanced.exprel_function>`
 62 *·Example·:doc:`advanced/opencv_movie·</examples/advanced.opencv_movie>`
 63 *·Example·:doc:`advanced/stochastic_odes·</examples/advanced.stochastic_odes>`
 64 *·Example·:doc:`advanced/compare_GSL_to_conventional·</examples/advanced.compare_GSL_to_conventional>`
 65 *·Example·:doc:`advanced/float_32_64_benchmark·</examples/advanced.float_32_64_benchmark>`
 66 *·Example·:doc:`advanced/custom_events·</examples/advanced.custom_events>`
  
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8 ..·autoclass::·PoissonGroup8 ..·autoclass::·PoissonGroup
  
9 Tutorials·and·examples·using·this9 Tutorials·and·examples·using·this
10 ---------------------------------10 ---------------------------------
  
11 *·Tutorial·:doc:`3-intro-to-brian-simulations·</resources/tutorials/3-intro-to-brian-simulations>`11 *·Tutorial·:doc:`3-intro-to-brian-simulations·</resources/tutorials/3-intro-to-brian-simulations>`
12 *·Example·:doc:`adaptive_threshold·</examples/adaptive_threshold>`12 *·Example·:doc:`adaptive_threshold·</examples/adaptive_threshold>`
13 *·Example·:doc:`advanced/custom_events·</examples/advanced.custom_events>` 
14 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_4_synrel·</examples/frompapers.Stimberg_et_al_2018.example_4_synrel>` 
15 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_4_rsmean·</examples/frompapers.Stimberg_et_al_2018.example_4_rsmean>` 
16 *·Example·:doc:`synapses/STDP·</examples/synapses.STDP>` 
17 *·Example·:doc:`standalone/STDP_standalone·</examples/standalone.STDP_standalone>`13 *·Example·:doc:`standalone/STDP_standalone·</examples/standalone.STDP_standalone>`
 14 *·Example·:doc:`synapses/STDP·</examples/synapses.STDP>`
 15 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_4_rsmean·</examples/frompapers.Stimberg_et_al_2018.example_4_rsmean>`
 16 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_4_synrel·</examples/frompapers.Stimberg_et_al_2018.example_4_synrel>`
 17 *·Example·:doc:`advanced/custom_events·</examples/advanced.custom_events>`
  
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7 ..·autoclass::·TimedArray7 ..·autoclass::·TimedArray
  
8 Tutorials·and·examples·using·this8 Tutorials·and·examples·using·this
9 ---------------------------------9 ---------------------------------
  
10 *·Tutorial·:doc:`3-intro-to-brian-simulations·</resources/tutorials/3-intro-to-brian-simulations>`10 *·Tutorial·:doc:`3-intro-to-brian-simulations·</resources/tutorials/3-intro-to-brian-simulations>`
11 *·Example·:doc:`frompapers/Brunel_Wang_2001·</examples/frompapers.Brunel_Wang_2001>`11 *·Example·:doc:`synapses/jeffress·</examples/synapses.jeffress>`
12 *·Example·:doc:`frompapers/Sturzl_et_al_2000·</examples/frompapers.Sturzl_et_al_2000>`12 *·Example·:doc:`frompapers/Sturzl_et_al_2000·</examples/frompapers.Sturzl_et_al_2000>`
13 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro·</examples/frompapers.Stimberg_et_al_2018.example_6_COBA_with_astro>`13 *·Example·:doc:`frompapers/Brunel_Wang_2001·</examples/frompapers.Brunel_Wang_2001>`
14 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_4_synrel·</examples/frompapers.Stimberg_et_al_2018.example_4_synrel>`14 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_4_synrel·</examples/frompapers.Stimberg_et_al_2018.example_4_synrel>`
15 *·Example·:doc:`synapses/jeffress·</examples/synapses.jeffress>`15 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro·</examples/frompapers.Stimberg_et_al_2018.example_6_COBA_with_astro>`
  
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./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.monitors.ratemonitor.PopulationRateMonitor.rst.txt
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6 (*Shortest·import*:·``from·brian2·import·PopulationRateMonitor)``6 (*Shortest·import*:·``from·brian2·import·PopulationRateMonitor)``
  
7 ..·autoclass::·PopulationRateMonitor7 ..·autoclass::·PopulationRateMonitor
  
8 Tutorials·and·examples·using·this8 Tutorials·and·examples·using·this
9 ---------------------------------9 ---------------------------------
  
10 *·Example·:doc:`frompapers/Brunel_Wang_2001·</examples/frompapers.Brunel_Wang_2001>` 
11 *·Example·:doc:`frompapers/Brunel_Hakim_1999·</examples/frompapers.Brunel_Hakim_1999>`10 *·Example·:doc:`frompapers/Brunel_Hakim_1999·</examples/frompapers.Brunel_Hakim_1999>`
 11 *·Example·:doc:`frompapers/Brunel_Wang_2001·</examples/frompapers.Brunel_Wang_2001>`
  
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./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.monitors.spikemonitor.SpikeMonitor.rst.txt
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6 (*Shortest·import*:·``from·brian2·import·SpikeMonitor)``6 (*Shortest·import*:·``from·brian2·import·SpikeMonitor)``
  
7 ..·autoclass::·SpikeMonitor7 ..·autoclass::·SpikeMonitor
  
8 Tutorials·and·examples·using·this8 Tutorials·and·examples·using·this
9 ---------------------------------9 ---------------------------------
  
10 *·Tutorial·:doc:`1-intro-to-brian-neurons·</resources/tutorials/1-intro-to-brian-neurons>` 
11 *·Tutorial·:doc:`3-intro-to-brian-simulations·</resources/tutorials/3-intro-to-brian-simulations>`10 *·Tutorial·:doc:`3-intro-to-brian-simulations·</resources/tutorials/3-intro-to-brian-simulations>`
12 *·Example·:doc:`IF_curve_LIF·</examples/IF_curve_LIF>` 
13 *·Example·:doc:`adaptive_threshold·</examples/adaptive_threshold>`11 *·Tutorial·:doc:`1-intro-to-brian-neurons·</resources/tutorials/1-intro-to-brian-neurons>`
 12 *·Example·:doc:`reliability·</examples/reliability>`
 13 *·Example·:doc:`non_reliability·</examples/non_reliability>`
14 *·Example·:doc:`phase_locking·</examples/phase_locking>`14 *·Example·:doc:`phase_locking·</examples/phase_locking>`
15 *·Example·:doc:`CUBA·</examples/CUBA>`15 *·Example·:doc:`CUBA·</examples/CUBA>`
 16 *·Example·:doc:`adaptive_threshold·</examples/adaptive_threshold>`
 17 *·Example·:doc:`IF_curve_LIF·</examples/IF_curve_LIF>`
16 *·Example·:doc:`IF_curve_Hodgkin_Huxley·</examples/IF_curve_Hodgkin_Huxley>`18 *·Example·:doc:`IF_curve_Hodgkin_Huxley·</examples/IF_curve_Hodgkin_Huxley>`
17 *·Example·:doc:`non_reliability·</examples/non_reliability>` 
18 *·Example·:doc:`reliability·</examples/reliability>` 
19 *·Example·:doc:`advanced/custom_events·</examples/advanced.custom_events>` 
20 *·Example·:doc:`advanced/opencv_movie·</examples/advanced.opencv_movie>`19 *·Example·:doc:`standalone/STDP_standalone·</examples/standalone.STDP_standalone>`
 20 *·Example·:doc:`standalone/cuba_openmp·</examples/standalone.cuba_openmp>`
 21 *·Example·:doc:`synapses/jeffress·</examples/synapses.jeffress>`
 22 *·Example·:doc:`synapses/licklider·</examples/synapses.licklider>`
 23 *·Example·:doc:`synapses/STDP·</examples/synapses.STDP>`
21 *·Example·:doc:`frompapers/Brette_2004·</examples/frompapers.Brette_2004>`24 *·Example·:doc:`frompapers/Brette_2004·</examples/frompapers.Brette_2004>`
 25 *·Example·:doc:`frompapers/Vogels_et_al_2011·</examples/frompapers.Vogels_et_al_2011>`
 26 *·Example·:doc:`frompapers/Brunel_Hakim_1999·</examples/frompapers.Brunel_Hakim_1999>`
22 *·Example·:doc:`frompapers/Rossant_et_al_2011bis·</examples/frompapers.Rossant_et_al_2011bis>`27 *·Example·:doc:`frompapers/Rossant_et_al_2011bis·</examples/frompapers.Rossant_et_al_2011bis>`
23 *·Example·:doc:`frompapers/Brunel_Wang_2001·</examples/frompapers.Brunel_Wang_2001>` 
24 *·Example·:doc:`frompapers/Diesmann_et_al_1999·</examples/frompapers.Diesmann_et_al_1999>`28 *·Example·:doc:`frompapers/Diesmann_et_al_1999·</examples/frompapers.Diesmann_et_al_1999>`
 29 *·Example·:doc:`frompapers/Sturzl_et_al_2000·</examples/frompapers.Sturzl_et_al_2000>`
25 *·Example·:doc:`frompapers/Brette_Gerstner_2005·</examples/frompapers.Brette_Gerstner_2005>`30 *·Example·:doc:`frompapers/Brette_Gerstner_2005·</examples/frompapers.Brette_Gerstner_2005>`
 31 *·Example·:doc:`frompapers/Brunel_Wang_2001·</examples/frompapers.Brunel_Wang_2001>`
26 *·Example·:doc:`frompapers/Platkiewicz_Brette_2011·</examples/frompapers.Platkiewicz_Brette_2011>`32 *·Example·:doc:`frompapers/Touboul_Brette_2008·</examples/frompapers.Touboul_Brette_2008>`
27 *·Example·:doc:`frompapers/Brette_Guigon_2003·</examples/frompapers.Brette_Guigon_2003>`33 *·Example·:doc:`frompapers/Brette_Guigon_2003·</examples/frompapers.Brette_Guigon_2003>`
28 *·Example·:doc:`frompapers/Brunel_Hakim_1999·</examples/frompapers.Brunel_Hakim_1999>` 
29 *·Example·:doc:`frompapers/Izhikevich_2007·</examples/frompapers.Izhikevich_2007>`34 *·Example·:doc:`frompapers/Izhikevich_2007·</examples/frompapers.Izhikevich_2007>`
30 *·Example·:doc:`frompapers/Sturzl_et_al_2000·</examples/frompapers.Sturzl_et_al_2000>` 
31 *·Example·:doc:`frompapers/Touboul_Brette_2008·</examples/frompapers.Touboul_Brette_2008>`35 *·Example·:doc:`frompapers/Platkiewicz_Brette_2011·</examples/frompapers.Platkiewicz_Brette_2011>`
32 *·Example·:doc:`frompapers/Vogels_et_al_2011·</examples/frompapers.Vogels_et_al_2011>` 
33 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_1_COBA·</examples/frompapers.Stimberg_et_al_2018.example_1_COBA>` 
34 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro·</examples/frompapers.Stimberg_et_al_2018.example_6_COBA_with_astro>` 
35 *·Example·:doc:`frompapers/Brette_2012/Fig5A·</examples/frompapers.Brette_2012.Fig5A>`36 *·Example·:doc:`frompapers/Brette_2012/Fig5A·</examples/frompapers.Brette_2012.Fig5A>`
 37 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro·</examples/frompapers.Stimberg_et_al_2018.example_6_COBA_with_astro>`
 38 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_1_COBA·</examples/frompapers.Stimberg_et_al_2018.example_1_COBA>`
36 *·Example·:doc:`synapses/STDP·</examples/synapses.STDP>` 
37 *·Example·:doc:`synapses/licklider·</examples/synapses.licklider>` 
38 *·Example·:doc:`synapses/jeffress·</examples/synapses.jeffress>` 
39 *·Example·:doc:`standalone/cuba_openmp·</examples/standalone.cuba_openmp>` 
40 *·Example·:doc:`standalone/STDP_standalone·</examples/standalone.STDP_standalone>` 
41 *·Example·:doc:`compartmental/hh_with_spikes·</examples/compartmental.hh_with_spikes>`39 *·Example·:doc:`compartmental/hh_with_spikes·</examples/compartmental.hh_with_spikes>`
 40 *·Example·:doc:`advanced/opencv_movie·</examples/advanced.opencv_movie>`
 41 *·Example·:doc:`advanced/custom_events·</examples/advanced.custom_events>`
  
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./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.monitors.statemonitor.StateMonitor.rst.txt
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6 (*Shortest·import*:·``from·brian2·import·StateMonitor)``6 (*Shortest·import*:·``from·brian2·import·StateMonitor)``
  
7 ..·autoclass::·StateMonitor7 ..·autoclass::·StateMonitor
  
8 Tutorials·and·examples·using·this8 Tutorials·and·examples·using·this
9 ---------------------------------9 ---------------------------------
  
 10 *·Tutorial·:doc:`3-intro-to-brian-simulations·</resources/tutorials/3-intro-to-brian-simulations>`
10 *·Tutorial·:doc:`1-intro-to-brian-neurons·</resources/tutorials/1-intro-to-brian-neurons>`11 *·Tutorial·:doc:`1-intro-to-brian-neurons·</resources/tutorials/1-intro-to-brian-neurons>`
11 *·Tutorial·:doc:`2-intro-to-brian-synapses·</resources/tutorials/2-intro-to-brian-synapses>`12 *·Tutorial·:doc:`2-intro-to-brian-synapses·</resources/tutorials/2-intro-to-brian-synapses>`
12 *·Tutorial·:doc:`3-intro-to-brian-simulations·</resources/tutorials/3-intro-to-brian-simulations>` 
13 *·Example·:doc:`adaptive_threshold·</examples/adaptive_threshold>` 
14 *·Example·:doc:`phase_locking·</examples/phase_locking>` 
15 *·Example·:doc:`COBAHH·</examples/COBAHH>`13 *·Example·:doc:`COBAHH·</examples/COBAHH>`
 14 *·Example·:doc:`phase_locking·</examples/phase_locking>`
 15 *·Example·:doc:`adaptive_threshold·</examples/adaptive_threshold>`
 16 *·Example·:doc:`standalone/STDP_standalone·</examples/standalone.STDP_standalone>`
 17 *·Example·:doc:`synapses/synapses·</examples/synapses.synapses>`
 18 *·Example·:doc:`synapses/jeffress·</examples/synapses.jeffress>`
 19 *·Example·:doc:`synapses/gapjunctions·</examples/synapses.gapjunctions>`
 20 *·Example·:doc:`synapses/STDP·</examples/synapses.STDP>`
 21 *·Example·:doc:`synapses/nonlinear·</examples/synapses.nonlinear>`
16 *·Example·:doc:`advanced/custom_events·</examples/advanced.custom_events>` 
17 *·Example·:doc:`advanced/stochastic_odes·</examples/advanced.stochastic_odes>` 
18 *·Example·:doc:`advanced/compare_GSL_to_conventional·</examples/advanced.compare_GSL_to_conventional>` 
19 *·Example·:doc:`frompapers/Wang_Buszaki_1996·</examples/frompapers.Wang_Buszaki_1996>` 
20 *·Example·:doc:`frompapers/Rossant_et_al_2011bis·</examples/frompapers.Rossant_et_al_2011bis>` 
21 *·Example·:doc:`frompapers/Destexhe_et_al_1998·</examples/frompapers.Destexhe_et_al_1998>` 
22 *·Example·:doc:`frompapers/Hindmarsh_Rose_1984·</examples/frompapers.Hindmarsh_Rose_1984>` 
23 *·Example·:doc:`frompapers/Brette_Gerstner_2005·</examples/frompapers.Brette_Gerstner_2005>` 
24 *·Example·:doc:`frompapers/Platkiewicz_Brette_2011·</examples/frompapers.Platkiewicz_Brette_2011>` 
25 *·Example·:doc:`frompapers/Rothman_Manis_2003·</examples/frompapers.Rothman_Manis_2003>`22 *·Example·:doc:`frompapers/Rothman_Manis_2003·</examples/frompapers.Rothman_Manis_2003>`
 23 *·Example·:doc:`frompapers/Destexhe_et_al_1998·</examples/frompapers.Destexhe_et_al_1998>`
 24 *·Example·:doc:`frompapers/Rossant_et_al_2011bis·</examples/frompapers.Rossant_et_al_2011bis>`
26 *·Example·:doc:`frompapers/Morris_Lecar_1981·</examples/frompapers.Morris_Lecar_1981>`25 *·Example·:doc:`frompapers/Morris_Lecar_1981·</examples/frompapers.Morris_Lecar_1981>`
27 *·Example·:doc:`frompapers/Brette_Guigon_2003·</examples/frompapers.Brette_Guigon_2003>`26 *·Example·:doc:`frompapers/Brette_Gerstner_2005·</examples/frompapers.Brette_Gerstner_2005>`
28 *·Example·:doc:`frompapers/Izhikevich_2007·</examples/frompapers.Izhikevich_2007>`27 *·Example·:doc:`frompapers/Wang_Buszaki_1996·</examples/frompapers.Wang_Buszaki_1996>`
29 *·Example·:doc:`frompapers/Clopath_et_al_2010_homeostasis·</examples/frompapers.Clopath_et_al_2010_homeostasis>`28 *·Example·:doc:`frompapers/Clopath_et_al_2010_homeostasis·</examples/frompapers.Clopath_et_al_2010_homeostasis>`
30 *·Example·:doc:`frompapers/Touboul_Brette_2008·</examples/frompapers.Touboul_Brette_2008>`29 *·Example·:doc:`frompapers/Touboul_Brette_2008·</examples/frompapers.Touboul_Brette_2008>`
31 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte·</examples/frompapers.Stimberg_et_al_2018.example_2_gchi_astrocyte>` 
32 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_1_COBA·</examples/frompapers.Stimberg_et_al_2018.example_1_COBA>` 
33 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_5_astro_ring·</examples/frompapers.Stimberg_et_al_2018.example_5_astro_ring>` 
34 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_4_synrel·</examples/frompapers.Stimberg_et_al_2018.example_4_synrel>` 
35 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_4_rsmean·</examples/frompapers.Stimberg_et_al_2018.example_4_rsmean>` 
36 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_3_io_synapse·</examples/frompapers.Stimberg_et_al_2018.example_3_io_synapse>` 
37 *·Example·:doc:`frompapers/Brette_2012/Fig3CF·</examples/frompapers.Brette_2012.Fig3CF>`30 *·Example·:doc:`frompapers/Brette_Guigon_2003·</examples/frompapers.Brette_Guigon_2003>`
 31 *·Example·:doc:`frompapers/Hindmarsh_Rose_1984·</examples/frompapers.Hindmarsh_Rose_1984>`
 32 *·Example·:doc:`frompapers/Izhikevich_2007·</examples/frompapers.Izhikevich_2007>`
 33 *·Example·:doc:`frompapers/Platkiewicz_Brette_2011·</examples/frompapers.Platkiewicz_Brette_2011>`
38 *·Example·:doc:`frompapers/Brette_2012/Fig5A·</examples/frompapers.Brette_2012.Fig5A>`34 *·Example·:doc:`frompapers/Brette_2012/Fig5A·</examples/frompapers.Brette_2012.Fig5A>`
39 *·Example·:doc:`frompapers/Brette_2012/Fig4·</examples/frompapers.Brette_2012.Fig4>` 
40 *·Example·:doc:`frompapers/Brette_2012/Fig3AB·</examples/frompapers.Brette_2012.Fig3AB>` 
41 *·Example·:doc:`frompapers/Brette_2012/Fig1·</examples/frompapers.Brette_2012.Fig1>`35 *·Example·:doc:`frompapers/Brette_2012/Fig1·</examples/frompapers.Brette_2012.Fig1>`
42 *·Example·:doc:`synapses/nonlinear·</examples/synapses.nonlinear>` 
43 *·Example·:doc:`synapses/gapjunctions·</examples/synapses.gapjunctions>` 
44 *·Example·:doc:`synapses/synapses·</examples/synapses.synapses>` 
45 *·Example·:doc:`synapses/STDP·</examples/synapses.STDP>` 
46 *·Example·:doc:`synapses/jeffress·</examples/synapses.jeffress>` 
47 *·Example·:doc:`standalone/STDP_standalone·</examples/standalone.STDP_standalone>`36 *·Example·:doc:`frompapers/Brette_2012/Fig3AB·</examples/frompapers.Brette_2012.Fig3AB>`
 37 *·Example·:doc:`frompapers/Brette_2012/Fig4·</examples/frompapers.Brette_2012.Fig4>`
 38 *·Example·:doc:`frompapers/Brette_2012/Fig3CF·</examples/frompapers.Brette_2012.Fig3CF>`
 39 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_4_rsmean·</examples/frompapers.Stimberg_et_al_2018.example_4_rsmean>`
 40 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_3_io_synapse·</examples/frompapers.Stimberg_et_al_2018.example_3_io_synapse>`
 41 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_4_synrel·</examples/frompapers.Stimberg_et_al_2018.example_4_synrel>`
 42 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_1_COBA·</examples/frompapers.Stimberg_et_al_2018.example_1_COBA>`
 43 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_5_astro_ring·</examples/frompapers.Stimberg_et_al_2018.example_5_astro_ring>`
 44 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte·</examples/frompapers.Stimberg_et_al_2018.example_2_gchi_astrocyte>`
48 *·Example·:doc:`compartmental/lfp·</examples/compartmental.lfp>`45 *·Example·:doc:`compartmental/lfp·</examples/compartmental.lfp>`
49 *·Example·:doc:`compartmental/hodgkin_huxley_1952·</examples/compartmental.hodgkin_huxley_1952>` 
50 *·Example·:doc:`compartmental/bipolar_with_inputs2·</examples/compartmental.bipolar_with_inputs2>` 
51 *·Example·:doc:`compartmental/bipolar_with_inputs·</examples/compartmental.bipolar_with_inputs>` 
52 *·Example·:doc:`compartmental/spike_initiation·</examples/compartmental.spike_initiation>` 
53 *·Example·:doc:`compartmental/infinite_cable·</examples/compartmental.infinite_cable>`46 *·Example·:doc:`compartmental/infinite_cable·</examples/compartmental.infinite_cable>`
54 *·Example·:doc:`compartmental/hh_with_spikes·</examples/compartmental.hh_with_spikes>`47 *·Example·:doc:`compartmental/hh_with_spikes·</examples/compartmental.hh_with_spikes>`
 48 *·Example·:doc:`compartmental/hodgkin_huxley_1952·</examples/compartmental.hodgkin_huxley_1952>`
 49 *·Example·:doc:`compartmental/spike_initiation·</examples/compartmental.spike_initiation>`
 50 *·Example·:doc:`compartmental/bipolar_with_inputs2·</examples/compartmental.bipolar_with_inputs2>`
55 *·Example·:doc:`compartmental/bipolar_cell·</examples/compartmental.bipolar_cell>`51 *·Example·:doc:`compartmental/bipolar_cell·</examples/compartmental.bipolar_cell>`
 52 *·Example·:doc:`compartmental/bipolar_with_inputs·</examples/compartmental.bipolar_with_inputs>`
 53 *·Example·:doc:`advanced/stochastic_odes·</examples/advanced.stochastic_odes>`
 54 *·Example·:doc:`advanced/compare_GSL_to_conventional·</examples/advanced.compare_GSL_to_conventional>`
 55 *·Example·:doc:`advanced/custom_events·</examples/advanced.custom_events>`
  
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./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.spatialneuron.morphology.Cylinder.rst.txt
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7 ..·autoclass::·Cylinder7 ..·autoclass::·Cylinder
  
8 Tutorials·and·examples·using·this8 Tutorials·and·examples·using·this
9 ---------------------------------9 ---------------------------------
  
10 *·Example·:doc:`frompapers/Destexhe_et_al_1998·</examples/frompapers.Destexhe_et_al_1998>`10 *·Example·:doc:`frompapers/Destexhe_et_al_1998·</examples/frompapers.Destexhe_et_al_1998>`
11 *·Example·:doc:`frompapers/Brette_2012/Fig3CF·</examples/frompapers.Brette_2012.Fig3CF>` 
12 *·Example·:doc:`frompapers/Brette_2012/Fig5A·</examples/frompapers.Brette_2012.Fig5A>`11 *·Example·:doc:`frompapers/Brette_2012/Fig5A·</examples/frompapers.Brette_2012.Fig5A>`
13 *·Example·:doc:`frompapers/Brette_2012/Fig3AB·</examples/frompapers.Brette_2012.Fig3AB>` 
14 *·Example·:doc:`frompapers/Brette_2012/Fig1·</examples/frompapers.Brette_2012.Fig1>`12 *·Example·:doc:`frompapers/Brette_2012/Fig1·</examples/frompapers.Brette_2012.Fig1>`
 13 *·Example·:doc:`frompapers/Brette_2012/Fig3AB·</examples/frompapers.Brette_2012.Fig3AB>`
 14 *·Example·:doc:`frompapers/Brette_2012/Fig3CF·</examples/frompapers.Brette_2012.Fig3CF>`
15 *·Example·:doc:`compartmental/lfp·</examples/compartmental.lfp>` 
16 *·Example·:doc:`compartmental/hodgkin_huxley_1952·</examples/compartmental.hodgkin_huxley_1952>` 
17 *·Example·:doc:`compartmental/bipolar_with_inputs2·</examples/compartmental.bipolar_with_inputs2>` 
18 *·Example·:doc:`compartmental/bipolar_with_inputs·</examples/compartmental.bipolar_with_inputs>` 
19 *·Example·:doc:`compartmental/rall·</examples/compartmental.rall>`15 *·Example·:doc:`compartmental/rall·</examples/compartmental.rall>`
20 *·Example·:doc:`compartmental/spike_initiation·</examples/compartmental.spike_initiation>`16 *·Example·:doc:`compartmental/lfp·</examples/compartmental.lfp>`
21 *·Example·:doc:`compartmental/infinite_cable·</examples/compartmental.infinite_cable>`17 *·Example·:doc:`compartmental/infinite_cable·</examples/compartmental.infinite_cable>`
22 *·Example·:doc:`compartmental/morphotest·</examples/compartmental.morphotest>` 
23 *·Example·:doc:`compartmental/cylinder·</examples/compartmental.cylinder>`18 *·Example·:doc:`compartmental/cylinder·</examples/compartmental.cylinder>`
24 *·Example·:doc:`compartmental/hh_with_spikes·</examples/compartmental.hh_with_spikes>`19 *·Example·:doc:`compartmental/hh_with_spikes·</examples/compartmental.hh_with_spikes>`
 20 *·Example·:doc:`compartmental/hodgkin_huxley_1952·</examples/compartmental.hodgkin_huxley_1952>`
 21 *·Example·:doc:`compartmental/spike_initiation·</examples/compartmental.spike_initiation>`
 22 *·Example·:doc:`compartmental/bipolar_with_inputs2·</examples/compartmental.bipolar_with_inputs2>`
 23 *·Example·:doc:`compartmental/morphotest·</examples/compartmental.morphotest>`
25 *·Example·:doc:`compartmental/bipolar_cell·</examples/compartmental.bipolar_cell>`24 *·Example·:doc:`compartmental/bipolar_cell·</examples/compartmental.bipolar_cell>`
 25 *·Example·:doc:`compartmental/bipolar_with_inputs·</examples/compartmental.bipolar_with_inputs>`
  
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./usr/share/doc/python-brian-doc/docs/_sources/reference/brian2.spatialneuron.morphology.Morphology.rst.txt
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6 (*Shortest·import*:·``from·brian2·import·Morphology)``6 (*Shortest·import*:·``from·brian2·import·Morphology)``
  
7 ..·autoclass::·Morphology7 ..·autoclass::·Morphology
  
8 Tutorials·and·examples·using·this8 Tutorials·and·examples·using·this
9 ---------------------------------9 ---------------------------------
  
10 *·Example·:doc:`frompapers/Brette_2012/Fig3CF·</examples/frompapers.Brette_2012.Fig3CF>` 
11 *·Example·:doc:`frompapers/Brette_2012/Fig5A·</examples/frompapers.Brette_2012.Fig5A>`10 *·Example·:doc:`frompapers/Brette_2012/Fig5A·</examples/frompapers.Brette_2012.Fig5A>`
12 *·Example·:doc:`frompapers/Brette_2012/Fig4·</examples/frompapers.Brette_2012.Fig4>` 
13 *·Example·:doc:`frompapers/Brette_2012/Fig3AB·</examples/frompapers.Brette_2012.Fig3AB>` 
14 *·Example·:doc:`frompapers/Brette_2012/Fig1·</examples/frompapers.Brette_2012.Fig1>`11 *·Example·:doc:`frompapers/Brette_2012/Fig1·</examples/frompapers.Brette_2012.Fig1>`
15 *·Example·:doc:`compartmental/bipolar_with_inputs2·</examples/compartmental.bipolar_with_inputs2>` 
16 *·Example·:doc:`compartmental/bipolar_with_inputs·</examples/compartmental.bipolar_with_inputs>`12 *·Example·:doc:`frompapers/Brette_2012/Fig3AB·</examples/frompapers.Brette_2012.Fig3AB>`
 13 *·Example·:doc:`frompapers/Brette_2012/Fig4·</examples/frompapers.Brette_2012.Fig4>`
 14 *·Example·:doc:`frompapers/Brette_2012/Fig3CF·</examples/frompapers.Brette_2012.Fig3CF>`
17 *·Example·:doc:`compartmental/rall·</examples/compartmental.rall>`15 *·Example·:doc:`compartmental/rall·</examples/compartmental.rall>`
18 *·Example·:doc:`compartmental/spike_initiation·</examples/compartmental.spike_initiation>` 
19 *·Example·:doc:`compartmental/infinite_cable·</examples/compartmental.infinite_cable>`16 *·Example·:doc:`compartmental/infinite_cable·</examples/compartmental.infinite_cable>`
20 *·Example·:doc:`compartmental/morphotest·</examples/compartmental.morphotest>` 
21 *·Example·:doc:`compartmental/cylinder·</examples/compartmental.cylinder>`17 *·Example·:doc:`compartmental/cylinder·</examples/compartmental.cylinder>`
 18 *·Example·:doc:`compartmental/spike_initiation·</examples/compartmental.spike_initiation>`
 19 *·Example·:doc:`compartmental/bipolar_with_inputs2·</examples/compartmental.bipolar_with_inputs2>`
 20 *·Example·:doc:`compartmental/morphotest·</examples/compartmental.morphotest>`
22 *·Example·:doc:`compartmental/bipolar_cell·</examples/compartmental.bipolar_cell>`21 *·Example·:doc:`compartmental/bipolar_cell·</examples/compartmental.bipolar_cell>`
 22 *·Example·:doc:`compartmental/bipolar_with_inputs·</examples/compartmental.bipolar_with_inputs>`
  
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6 (*Shortest·import*:·``from·brian2·import·Soma)``6 (*Shortest·import*:·``from·brian2·import·Soma)``
  
7 ..·autoclass::·Soma7 ..·autoclass::·Soma
  
8 Tutorials·and·examples·using·this8 Tutorials·and·examples·using·this
9 ---------------------------------9 ---------------------------------
  
10 *·Example·:doc:`frompapers/Brette_2012/Fig3CF·</examples/frompapers.Brette_2012.Fig3CF>` 
11 *·Example·:doc:`frompapers/Brette_2012/Fig5A·</examples/frompapers.Brette_2012.Fig5A>`10 *·Example·:doc:`frompapers/Brette_2012/Fig5A·</examples/frompapers.Brette_2012.Fig5A>`
12 *·Example·:doc:`frompapers/Brette_2012/Fig4·</examples/frompapers.Brette_2012.Fig4>` 
13 *·Example·:doc:`frompapers/Brette_2012/Fig3AB·</examples/frompapers.Brette_2012.Fig3AB>` 
14 *·Example·:doc:`frompapers/Brette_2012/Fig1·</examples/frompapers.Brette_2012.Fig1>`11 *·Example·:doc:`frompapers/Brette_2012/Fig1·</examples/frompapers.Brette_2012.Fig1>`
15 *·Example·:doc:`compartmental/bipolar_with_inputs2·</examples/compartmental.bipolar_with_inputs2>` 
16 *·Example·:doc:`compartmental/bipolar_with_inputs·</examples/compartmental.bipolar_with_inputs>`12 *·Example·:doc:`frompapers/Brette_2012/Fig3AB·</examples/frompapers.Brette_2012.Fig3AB>`
 13 *·Example·:doc:`frompapers/Brette_2012/Fig4·</examples/frompapers.Brette_2012.Fig4>`
 14 *·Example·:doc:`frompapers/Brette_2012/Fig3CF·</examples/frompapers.Brette_2012.Fig3CF>`
17 *·Example·:doc:`compartmental/spike_initiation·</examples/compartmental.spike_initiation>`15 *·Example·:doc:`compartmental/spike_initiation·</examples/compartmental.spike_initiation>`
 16 *·Example·:doc:`compartmental/bipolar_with_inputs2·</examples/compartmental.bipolar_with_inputs2>`
18 *·Example·:doc:`compartmental/morphotest·</examples/compartmental.morphotest>`17 *·Example·:doc:`compartmental/morphotest·</examples/compartmental.morphotest>`
19 *·Example·:doc:`compartmental/bipolar_cell·</examples/compartmental.bipolar_cell>`18 *·Example·:doc:`compartmental/bipolar_cell·</examples/compartmental.bipolar_cell>`
 19 *·Example·:doc:`compartmental/bipolar_with_inputs·</examples/compartmental.bipolar_with_inputs>`
  
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7 ..·autoclass::·SpatialNeuron7 ..·autoclass::·SpatialNeuron
  
8 Tutorials·and·examples·using·this8 Tutorials·and·examples·using·this
9 ---------------------------------9 ---------------------------------
  
10 *·Example·:doc:`frompapers/Destexhe_et_al_1998·</examples/frompapers.Destexhe_et_al_1998>`10 *·Example·:doc:`frompapers/Destexhe_et_al_1998·</examples/frompapers.Destexhe_et_al_1998>`
11 *·Example·:doc:`frompapers/Brette_2012/Fig3CF·</examples/frompapers.Brette_2012.Fig3CF>` 
12 *·Example·:doc:`frompapers/Brette_2012/Fig5A·</examples/frompapers.Brette_2012.Fig5A>`11 *·Example·:doc:`frompapers/Brette_2012/Fig5A·</examples/frompapers.Brette_2012.Fig5A>`
13 *·Example·:doc:`frompapers/Brette_2012/Fig4·</examples/frompapers.Brette_2012.Fig4>` 
14 *·Example·:doc:`frompapers/Brette_2012/Fig3AB·</examples/frompapers.Brette_2012.Fig3AB>` 
15 *·Example·:doc:`frompapers/Brette_2012/Fig1·</examples/frompapers.Brette_2012.Fig1>`12 *·Example·:doc:`frompapers/Brette_2012/Fig1·</examples/frompapers.Brette_2012.Fig1>`
 13 *·Example·:doc:`frompapers/Brette_2012/Fig3AB·</examples/frompapers.Brette_2012.Fig3AB>`
 14 *·Example·:doc:`frompapers/Brette_2012/Fig4·</examples/frompapers.Brette_2012.Fig4>`
 15 *·Example·:doc:`frompapers/Brette_2012/Fig3CF·</examples/frompapers.Brette_2012.Fig3CF>`
16 *·Example·:doc:`compartmental/lfp·</examples/compartmental.lfp>` 
17 *·Example·:doc:`compartmental/hodgkin_huxley_1952·</examples/compartmental.hodgkin_huxley_1952>` 
18 *·Example·:doc:`compartmental/bipolar_with_inputs2·</examples/compartmental.bipolar_with_inputs2>` 
19 *·Example·:doc:`compartmental/bipolar_with_inputs·</examples/compartmental.bipolar_with_inputs>` 
20 *·Example·:doc:`compartmental/rall·</examples/compartmental.rall>`16 *·Example·:doc:`compartmental/rall·</examples/compartmental.rall>`
21 *·Example·:doc:`compartmental/spike_initiation·</examples/compartmental.spike_initiation>`17 *·Example·:doc:`compartmental/lfp·</examples/compartmental.lfp>`
22 *·Example·:doc:`compartmental/infinite_cable·</examples/compartmental.infinite_cable>`18 *·Example·:doc:`compartmental/infinite_cable·</examples/compartmental.infinite_cable>`
23 *·Example·:doc:`compartmental/morphotest·</examples/compartmental.morphotest>` 
24 *·Example·:doc:`compartmental/cylinder·</examples/compartmental.cylinder>`19 *·Example·:doc:`compartmental/cylinder·</examples/compartmental.cylinder>`
25 *·Example·:doc:`compartmental/hh_with_spikes·</examples/compartmental.hh_with_spikes>`20 *·Example·:doc:`compartmental/hh_with_spikes·</examples/compartmental.hh_with_spikes>`
 21 *·Example·:doc:`compartmental/hodgkin_huxley_1952·</examples/compartmental.hodgkin_huxley_1952>`
 22 *·Example·:doc:`compartmental/spike_initiation·</examples/compartmental.spike_initiation>`
 23 *·Example·:doc:`compartmental/bipolar_with_inputs2·</examples/compartmental.bipolar_with_inputs2>`
 24 *·Example·:doc:`compartmental/morphotest·</examples/compartmental.morphotest>`
26 *·Example·:doc:`compartmental/bipolar_cell·</examples/compartmental.bipolar_cell>`25 *·Example·:doc:`compartmental/bipolar_cell·</examples/compartmental.bipolar_cell>`
 26 *·Example·:doc:`compartmental/bipolar_with_inputs·</examples/compartmental.bipolar_with_inputs>`
  
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6 (*Shortest·import*:·``from·brian2·import·Synapses)``6 (*Shortest·import*:·``from·brian2·import·Synapses)``
  
7 ..·autoclass::·Synapses7 ..·autoclass::·Synapses
  
8 Tutorials·and·examples·using·this8 Tutorials·and·examples·using·this
9 ---------------------------------9 ---------------------------------
  
 10 *·Tutorial·:doc:`3-intro-to-brian-simulations·</resources/tutorials/3-intro-to-brian-simulations>`
10 *·Tutorial·:doc:`1-intro-to-brian-neurons·</resources/tutorials/1-intro-to-brian-neurons>`11 *·Tutorial·:doc:`1-intro-to-brian-neurons·</resources/tutorials/1-intro-to-brian-neurons>`
11 *·Tutorial·:doc:`2-intro-to-brian-synapses·</resources/tutorials/2-intro-to-brian-synapses>`12 *·Tutorial·:doc:`2-intro-to-brian-synapses·</resources/tutorials/2-intro-to-brian-synapses>`
12 *·Tutorial·:doc:`3-intro-to-brian-simulations·</resources/tutorials/3-intro-to-brian-simulations>` 
13 *·Example·:doc:`adaptive_threshold·</examples/adaptive_threshold>` 
14 *·Example·:doc:`CUBA·</examples/CUBA>` 
15 *·Example·:doc:`COBAHH·</examples/COBAHH>`13 *·Example·:doc:`COBAHH·</examples/COBAHH>`
16 *·Example·:doc:`advanced/custom_events·</examples/advanced.custom_events>` 
17 *·Example·:doc:`advanced/float_32_64_benchmark·</examples/advanced.float_32_64_benchmark>` 
18 *·Example·:doc:`frompapers/Kremer_et_al_2011_barrel_cortex·</examples/frompapers.Kremer_et_al_2011_barrel_cortex>` 
19 *·Example·:doc:`frompapers/Brunel_Wang_2001·</examples/frompapers.Brunel_Wang_2001>`14 *·Example·:doc:`CUBA·</examples/CUBA>`
 15 *·Example·:doc:`adaptive_threshold·</examples/adaptive_threshold>`
 16 *·Example·:doc:`standalone/STDP_standalone·</examples/standalone.STDP_standalone>`
 17 *·Example·:doc:`standalone/cuba_openmp·</examples/standalone.cuba_openmp>`
 18 *·Example·:doc:`synapses/synapses·</examples/synapses.synapses>`
 19 *·Example·:doc:`synapses/jeffress·</examples/synapses.jeffress>`
 20 *·Example·:doc:`synapses/gapjunctions·</examples/synapses.gapjunctions>`
 21 *·Example·:doc:`synapses/spatial_connections·</examples/synapses.spatial_connections>`
 22 *·Example·:doc:`synapses/licklider·</examples/synapses.licklider>`
 23 *·Example·:doc:`synapses/efficient_gaussian_connectivity·</examples/synapses.efficient_gaussian_connectivity>`
 24 *·Example·:doc:`synapses/STDP·</examples/synapses.STDP>`
 25 *·Example·:doc:`synapses/state_variables·</examples/synapses.state_variables>`
 26 *·Example·:doc:`synapses/nonlinear·</examples/synapses.nonlinear>`
20 *·Example·:doc:`frompapers/Diesmann_et_al_1999·</examples/frompapers.Diesmann_et_al_1999>`27 *·Example·:doc:`frompapers/Vogels_et_al_2011·</examples/frompapers.Vogels_et_al_2011>`
21 *·Example·:doc:`frompapers/Clopath_et_al_2010_no_homeostasis·</examples/frompapers.Clopath_et_al_2010_no_homeostasis>` 
22 *·Example·:doc:`frompapers/Brunel_Hakim_1999·</examples/frompapers.Brunel_Hakim_1999>`28 *·Example·:doc:`frompapers/Brunel_Hakim_1999·</examples/frompapers.Brunel_Hakim_1999>`
23 *·Example·:doc:`frompapers/Izhikevich_2007·</examples/frompapers.Izhikevich_2007>`29 *·Example·:doc:`frompapers/Diesmann_et_al_1999·</examples/frompapers.Diesmann_et_al_1999>`
24 *·Example·:doc:`frompapers/Sturzl_et_al_2000·</examples/frompapers.Sturzl_et_al_2000>`30 *·Example·:doc:`frompapers/Sturzl_et_al_2000·</examples/frompapers.Sturzl_et_al_2000>`
 31 *·Example·:doc:`frompapers/Brunel_Wang_2001·</examples/frompapers.Brunel_Wang_2001>`
25 *·Example·:doc:`frompapers/Clopath_et_al_2010_homeostasis·</examples/frompapers.Clopath_et_al_2010_homeostasis>`32 *·Example·:doc:`frompapers/Clopath_et_al_2010_homeostasis·</examples/frompapers.Clopath_et_al_2010_homeostasis>`
26 *·Example·:doc:`frompapers/Vogels_et_al_2011·</examples/frompapers.Vogels_et_al_2011>`33 *·Example·:doc:`frompapers/Kremer_et_al_2011_barrel_cortex·</examples/frompapers.Kremer_et_al_2011_barrel_cortex>`
 34 *·Example·:doc:`frompapers/Izhikevich_2007·</examples/frompapers.Izhikevich_2007>`
 35 *·Example·:doc:`frompapers/Clopath_et_al_2010_no_homeostasis·</examples/frompapers.Clopath_et_al_2010_no_homeostasis>`
 36 *·Example·:doc:`frompapers/Brette_2012/Fig5A·</examples/frompapers.Brette_2012.Fig5A>`
27 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte·</examples/frompapers.Stimberg_et_al_2018.example_2_gchi_astrocyte>` 
28 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_1_COBA·</examples/frompapers.Stimberg_et_al_2018.example_1_COBA>` 
29 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_5_astro_ring·</examples/frompapers.Stimberg_et_al_2018.example_5_astro_ring>` 
30 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro·</examples/frompapers.Stimberg_et_al_2018.example_6_COBA_with_astro>` 
31 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_4_synrel·</examples/frompapers.Stimberg_et_al_2018.example_4_synrel>` 
32 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_4_rsmean·</examples/frompapers.Stimberg_et_al_2018.example_4_rsmean>`37 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_4_rsmean·</examples/frompapers.Stimberg_et_al_2018.example_4_rsmean>`
33 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_3_io_synapse·</examples/frompapers.Stimberg_et_al_2018.example_3_io_synapse>`38 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_3_io_synapse·</examples/frompapers.Stimberg_et_al_2018.example_3_io_synapse>`
 39 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_4_synrel·</examples/frompapers.Stimberg_et_al_2018.example_4_synrel>`
 40 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro·</examples/frompapers.Stimberg_et_al_2018.example_6_COBA_with_astro>`
 41 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_1_COBA·</examples/frompapers.Stimberg_et_al_2018.example_1_COBA>`
 42 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_5_astro_ring·</examples/frompapers.Stimberg_et_al_2018.example_5_astro_ring>`
 43 *·Example·:doc:`frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte·</examples/frompapers.Stimberg_et_al_2018.example_2_gchi_astrocyte>`
34 *·Example·:doc:`frompapers/Brette_2012/Fig5A·</examples/frompapers.Brette_2012.Fig5A>` 
35 *·Example·:doc:`synapses/nonlinear·</examples/synapses.nonlinear>` 
36 *·Example·:doc:`synapses/gapjunctions·</examples/synapses.gapjunctions>` 
37 *·Example·:doc:`synapses/efficient_gaussian_connectivity·</examples/synapses.efficient_gaussian_connectivity>` 
38 *·Example·:doc:`synapses/synapses·</examples/synapses.synapses>` 
39 *·Example·:doc:`synapses/STDP·</examples/synapses.STDP>` 
40 *·Example·:doc:`synapses/licklider·</examples/synapses.licklider>` 
41 *·Example·:doc:`synapses/jeffress·</examples/synapses.jeffress>` 
42 *·Example·:doc:`synapses/state_variables·</examples/synapses.state_variables>` 
43 *·Example·:doc:`synapses/spatial_connections·</examples/synapses.spatial_connections>` 
44 *·Example·:doc:`standalone/cuba_openmp·</examples/standalone.cuba_openmp>` 
45 *·Example·:doc:`standalone/STDP_standalone·</examples/standalone.STDP_standalone>` 
46 *·Example·:doc:`compartmental/lfp·</examples/compartmental.lfp>`44 *·Example·:doc:`compartmental/lfp·</examples/compartmental.lfp>`
47 *·Example·:doc:`compartmental/bipolar_with_inputs2·</examples/compartmental.bipolar_with_inputs2>`45 *·Example·:doc:`compartmental/bipolar_with_inputs2·</examples/compartmental.bipolar_with_inputs2>`
48 *·Example·:doc:`compartmental/bipolar_with_inputs·</examples/compartmental.bipolar_with_inputs>`46 *·Example·:doc:`compartmental/bipolar_with_inputs·</examples/compartmental.bipolar_with_inputs>`
 47 *·Example·:doc:`advanced/float_32_64_benchmark·</examples/advanced.float_32_64_benchmark>`
 48 *·Example·:doc:`advanced/custom_events·</examples/advanced.custom_events>`
  
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116 </dd></dl>116 </dd></dl>
  
117 </dd></dl>117 </dd></dl>
  
118 <div·class="section"·id="tutorials-and-examples-using-this">118 <div·class="section"·id="tutorials-and-examples-using-this">
119 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>119 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>
120 <ul·class="simple">120 <ul·class="simple">
121 <li><p>Example·<a·class="reference·internal"·href="../examples/CUBA.html"><span·class="doc">CUBA</span></a></p></li> 
122 <li><p>Example·<a·class="reference·internal"·href="../examples/COBAHH.html"><span·class="doc">COBAHH</span></a></p></li>121 <li><p>Example·<a·class="reference·internal"·href="../examples/COBAHH.html"><span·class="doc">COBAHH</span></a></p></li>
 122 <li><p>Example·<a·class="reference·internal"·href="../examples/CUBA.html"><span·class="doc">CUBA</span></a></p></li>
123 </ul>123 </ul>
124 </div>124 </div>
125 </div>125 </div>
  
  
126 ··········</div>126 ··········</div>
127 ········</div>127 ········</div>
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41 ············considered·identical.41 ············considered·identical.
42 ········set_interval(self,·start,·end)¶42 ········set_interval(self,·start,·end)¶
43 ············Set·the·start·and·end·time·of·the·simulation.43 ············Set·the·start·and·end·time·of·the·simulation.
44 ············Sets·the·start·and·end·value·of·the·clock·precisely·if·possible44 ············Sets·the·start·and·end·value·of·the·clock·precisely·if·possible
45 ············(using·epsilon)·or·rounding·up·if·not.·This·assures·that·multiple45 ············(using·epsilon)·or·rounding·up·if·not.·This·assures·that·multiple
46 ············calls·to·Network.run·will·not·re-run·the·same·time·step.46 ············calls·to·Network.run·will·not·re-run·the·same·time·step.
47 *****·Tutorials·and·examples·using·this¶·*****47 *****·Tutorials·and·examples·using·this¶·*****
48 ····*·Example·CUBA 
49 ····*·Example·COBAHH48 ····*·Example·COBAHH
 49 ····*·Example·CUBA
50 [Logo]50 [Logo]
51 ******·Brian_2·******51 ******·Brian_2·******
52 ****·Navigation·****52 ****·Navigation·****
53 ····*·Introduction53 ····*·Introduction
54 ····*·User’s_guide54 ····*·User’s_guide
55 ····*·Advanced_guide55 ····*·Advanced_guide
56 ····*·Examples56 ····*·Examples
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71 </dd></dl>71 </dd></dl>
  
72 </dd></dl>72 </dd></dl>
  
73 <div·class="section"·id="tutorials-and-examples-using-this">73 <div·class="section"·id="tutorials-and-examples-using-this">
74 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>74 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>
75 <ul·class="simple">75 <ul·class="simple">
76 <li><p>Example·<a·class="reference·internal"·href="../examples/IF_curve_Hodgkin_Huxley.html"><span·class="doc">IF_curve_Hodgkin_Huxley</span></a></p></li> 
77 <li><p>Example·<a·class="reference·internal"·href="../examples/COBAHH.html"><span·class="doc">COBAHH</span></a></p></li>76 <li><p>Example·<a·class="reference·internal"·href="../examples/COBAHH.html"><span·class="doc">COBAHH</span></a></p></li>
 77 <li><p>Example·<a·class="reference·internal"·href="../examples/IF_curve_Hodgkin_Huxley.html"><span·class="doc">IF_curve_Hodgkin_Huxley</span></a></p></li>
78 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.float_32_64_benchmark.html"><span·class="doc">advanced/float_32_64_benchmark</span></a></p></li> 
79 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.exprel_function.html"><span·class="doc">advanced/exprel_function</span></a></p></li> 
80 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Wang_Buszaki_1996.html"><span·class="doc">frompapers/Wang_Buszaki_1996</span></a></p></li>78 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Wang_Buszaki_1996.html"><span·class="doc">frompapers/Wang_Buszaki_1996</span></a></p></li>
81 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.lfp.html"><span·class="doc">compartmental/lfp</span></a></p></li>79 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.lfp.html"><span·class="doc">compartmental/lfp</span></a></p></li>
82 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.hodgkin_huxley_1952.html"><span·class="doc">compartmental/hodgkin_huxley_1952</span></a></p></li> 
83 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.hh_with_spikes.html"><span·class="doc">compartmental/hh_with_spikes</span></a></p></li>80 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.hh_with_spikes.html"><span·class="doc">compartmental/hh_with_spikes</span></a></p></li>
 81 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.hodgkin_huxley_1952.html"><span·class="doc">compartmental/hodgkin_huxley_1952</span></a></p></li>
 82 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.exprel_function.html"><span·class="doc">advanced/exprel_function</span></a></p></li>
 83 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.float_32_64_benchmark.html"><span·class="doc">advanced/float_32_64_benchmark</span></a></p></li>
84 </ul>84 </ul>
85 </div>85 </div>
86 </div>86 </div>
  
  
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21 ······fdiff([argindex])·Returns·the·first·derivative·of·this·function.21 ······fdiff([argindex])·Returns·the·first·derivative·of·this·function.
22 ······Details22 ······Details
23 ········classmethodeval(arg)[source]¶23 ········classmethodeval(arg)[source]¶
24 ············Returns·a·canonical·form·of·cls·applied·to·arguments·args.24 ············Returns·a·canonical·form·of·cls·applied·to·arguments·args.
25 ········fdiff(argindex=1)[source]¶25 ········fdiff(argindex=1)[source]¶
26 ············Returns·the·first·derivative·of·this·function.26 ············Returns·the·first·derivative·of·this·function.
27 *****·Tutorials·and·examples·using·this¶·*****27 *****·Tutorials·and·examples·using·this¶·*****
28 ····*·Example·IF_curve_Hodgkin_Huxley 
29 ····*·Example·COBAHH28 ····*·Example·COBAHH
 29 ····*·Example·IF_curve_Hodgkin_Huxley
30 ····*·Example·advanced/float_32_64_benchmark 
31 ····*·Example·advanced/exprel_function 
32 ····*·Example·frompapers/Wang_Buszaki_199630 ····*·Example·frompapers/Wang_Buszaki_1996
33 ····*·Example·compartmental/lfp31 ····*·Example·compartmental/lfp
34 ····*·Example·compartmental/hodgkin_huxley_1952 
35 ····*·Example·compartmental/hh_with_spikes32 ····*·Example·compartmental/hh_with_spikes
 33 ····*·Example·compartmental/hodgkin_huxley_1952
 34 ····*·Example·advanced/exprel_function
 35 ····*·Example·advanced/float_32_64_benchmark
36 [Logo]36 [Logo]
37 ******·Brian_2·******37 ******·Brian_2·******
38 ****·Navigation·****38 ****·Navigation·****
39 ····*·Introduction39 ····*·Introduction
40 ····*·User’s_guide40 ····*·User’s_guide
41 ····*·Advanced_guide41 ····*·Advanced_guide
42 ····*·Examples42 ····*·Examples
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540 <div·class="section"·id="tutorials-and-examples-using-this">540 <div·class="section"·id="tutorials-and-examples-using-this">
541 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>541 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>
542 <ul·class="simple">542 <ul·class="simple">
543 <li><p>Tutorial·<span·class="xref·std·std-doc">3-intro-to-brian-simulations</span></p></li>543 <li><p>Tutorial·<span·class="xref·std·std-doc">3-intro-to-brian-simulations</span></p></li>
544 <li><p>Example·<a·class="reference·internal"·href="../examples/IF_curve_LIF.html"><span·class="doc">IF_curve_LIF</span></a></p></li>544 <li><p>Example·<a·class="reference·internal"·href="../examples/IF_curve_LIF.html"><span·class="doc">IF_curve_LIF</span></a></p></li>
545 <li><p>Example·<a·class="reference·internal"·href="../examples/IF_curve_Hodgkin_Huxley.html"><span·class="doc">IF_curve_Hodgkin_Huxley</span></a></p></li>545 <li><p>Example·<a·class="reference·internal"·href="../examples/IF_curve_Hodgkin_Huxley.html"><span·class="doc">IF_curve_Hodgkin_Huxley</span></a></p></li>
 546 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brunel_Wang_2001.html"><span·class="doc">frompapers/Brunel_Wang_2001</span></a></p></li>
546 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.stochastic_odes.html"><span·class="doc">advanced/stochastic_odes</span></a></p></li>547 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.stochastic_odes.html"><span·class="doc">advanced/stochastic_odes</span></a></p></li>
547 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.compare_GSL_to_conventional.html"><span·class="doc">advanced/compare_GSL_to_conventional</span></a></p></li>548 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.compare_GSL_to_conventional.html"><span·class="doc">advanced/compare_GSL_to_conventional</span></a></p></li>
548 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brunel_Wang_2001.html"><span·class="doc">frompapers/Brunel_Wang_2001</span></a></p></li> 
549 </ul>549 </ul>
550 </div>550 </div>
551 </div>551 </div>
  
  
552 ··········</div>552 ··········</div>
553 ········</div>553 ········</div>
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330 ············or·versions.·If·you·are·interested·in·storing·the·state·of·a330 ············or·versions.·If·you·are·interested·in·storing·the·state·of·a
331 ············network·for·documentation·or·analysis·purposes·use331 ············network·for·documentation·or·analysis·purposes·use
332 ············Network.get_states·instead.332 ············Network.get_states·instead.
333 *****·Tutorials·and·examples·using·this¶·*****333 *****·Tutorials·and·examples·using·this¶·*****
334 ····*·Tutorial·3-intro-to-brian-simulations334 ····*·Tutorial·3-intro-to-brian-simulations
335 ····*·Example·IF_curve_LIF335 ····*·Example·IF_curve_LIF
336 ····*·Example·IF_curve_Hodgkin_Huxley336 ····*·Example·IF_curve_Hodgkin_Huxley
 337 ····*·Example·frompapers/Brunel_Wang_2001
337 ····*·Example·advanced/stochastic_odes338 ····*·Example·advanced/stochastic_odes
338 ····*·Example·advanced/compare_GSL_to_conventional339 ····*·Example·advanced/compare_GSL_to_conventional
339 ····*·Example·frompapers/Brunel_Wang_2001 
340 [Logo]340 [Logo]
341 ******·Brian_2·******341 ******·Brian_2·******
342 ****·Navigation·****342 ****·Navigation·****
343 ····*·Introduction343 ····*·Introduction
344 ····*·User’s_guide344 ····*·User’s_guide
345 ····*·Advanced_guide345 ····*·Advanced_guide
346 ····*·Examples346 ····*·Examples
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58 </dd></dl>58 </dd></dl>
  
59 </dd></dl>59 </dd></dl>
  
60 <div·class="section"·id="tutorials-and-examples-using-this">60 <div·class="section"·id="tutorials-and-examples-using-this">
61 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>61 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>
62 <ul·class="simple">62 <ul·class="simple">
63 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.exprel_function.html"><span·class="doc">advanced/exprel_function</span></a></p></li> 
64 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_2_gchi_astrocyte.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte</span></a></p></li>63 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_2_gchi_astrocyte.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte</span></a></p></li>
 64 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.exprel_function.html"><span·class="doc">advanced/exprel_function</span></a></p></li>
65 </ul>65 </ul>
66 </div>66 </div>
67 </div>67 </div>
  
  
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69 ········</div>69 ········</div>
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14 ······Dummy·object14 ······Dummy·object
15 ······Methods15 ······Methods
16 ······__call__(*args, **kwdsCall·self·as·a·function.16 ······__call__(*args, **kwdsCall·self·as·a·function.
17 ······Details17 ······Details
18 ········__call__(*args,·**kwds)[source]¶18 ········__call__(*args,·**kwds)[source]¶
19 ············Call·self·as·a·function.19 ············Call·self·as·a·function.
20 *****·Tutorials·and·examples·using·this¶·*****20 *****·Tutorials·and·examples·using·this¶·*****
21 ····*·Example·advanced/exprel_function 
22 ····*·Example·frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte21 ····*·Example·frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte
 22 ····*·Example·advanced/exprel_function
23 [Logo]23 [Logo]
24 ******·Brian_2·******24 ******·Brian_2·******
25 ****·Navigation·****25 ****·Navigation·****
26 ····*·Introduction26 ····*·Introduction
27 ····*·User’s_guide27 ····*·User’s_guide
28 ····*·Advanced_guide28 ····*·Advanced_guide
29 ····*·Examples29 ····*·Examples
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404 <dd></dd></dl>404 <dd></dd></dl>
  
405 </dd></dl>405 </dd></dl>
  
406 <div·class="section"·id="tutorials-and-examples-using-this">406 <div·class="section"·id="tutorials-and-examples-using-this">
407 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>407 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>
408 <ul·class="simple">408 <ul·class="simple">
409 <li><p>Example·<a·class="reference·internal"·href="../examples/IF_curve_Hodgkin_Huxley.html"><span·class="doc">IF_curve_Hodgkin_Huxley</span></a></p></li> 
410 <li><p>Example·<a·class="reference·internal"·href="../examples/COBAHH.html"><span·class="doc">COBAHH</span></a></p></li>409 <li><p>Example·<a·class="reference·internal"·href="../examples/COBAHH.html"><span·class="doc">COBAHH</span></a></p></li>
 410 <li><p>Example·<a·class="reference·internal"·href="../examples/IF_curve_Hodgkin_Huxley.html"><span·class="doc">IF_curve_Hodgkin_Huxley</span></a></p></li>
411 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.float_32_64_benchmark.html"><span·class="doc">advanced/float_32_64_benchmark</span></a></p></li> 
412 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Rossant_et_al_2011bis.html"><span·class="doc">frompapers/Rossant_et_al_2011bis</span></a></p></li> 
413 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Destexhe_et_al_1998.html"><span·class="doc">frompapers/Destexhe_et_al_1998</span></a></p></li>411 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Destexhe_et_al_1998.html"><span·class="doc">frompapers/Destexhe_et_al_1998</span></a></p></li>
 412 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Rossant_et_al_2011bis.html"><span·class="doc">frompapers/Rossant_et_al_2011bis</span></a></p></li>
414 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Diesmann_et_al_1999.html"><span·class="doc">frompapers/Diesmann_et_al_1999</span></a></p></li>413 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Diesmann_et_al_1999.html"><span·class="doc">frompapers/Diesmann_et_al_1999</span></a></p></li>
 414 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Clopath_et_al_2010_homeostasis.html"><span·class="doc">frompapers/Clopath_et_al_2010_homeostasis</span></a></p></li>
415 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Hindmarsh_Rose_1984.html"><span·class="doc">frompapers/Hindmarsh_Rose_1984</span></a></p></li>415 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Hindmarsh_Rose_1984.html"><span·class="doc">frompapers/Hindmarsh_Rose_1984</span></a></p></li>
416 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Clopath_et_al_2010_no_homeostasis.html"><span·class="doc">frompapers/Clopath_et_al_2010_no_homeostasis</span></a></p></li>416 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Clopath_et_al_2010_no_homeostasis.html"><span·class="doc">frompapers/Clopath_et_al_2010_no_homeostasis</span></a></p></li>
417 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Clopath_et_al_2010_homeostasis.html"><span·class="doc">frompapers/Clopath_et_al_2010_homeostasis</span></a></p></li>417 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.float_32_64_benchmark.html"><span·class="doc">advanced/float_32_64_benchmark</span></a></p></li>
418 </ul>418 </ul>
419 </div>419 </div>
420 </div>420 </div>
  
  
421 ··········</div>421 ··········</div>
422 ········</div>422 ········</div>
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194 ··············Parameters194 ··············Parameters
195 ··················func·:·callable195 ··················func·:·callable
196 ·······················The·function·has·to·receive·a·single·argument,·the196 ·······················The·function·has·to·receive·a·single·argument,·the
197 ·······················name·of·the·identifier·to·check,·and·raise·a197 ·······················name·of·the·identifier·to·check,·and·raise·a
198 ·······················ValueError·if·the·identifier·violates·any·rule.198 ·······················ValueError·if·the·identifier·violates·any·rule.
199 ········substitute(**kwds)[source]¶199 ········substitute(**kwds)[source]¶
200 *****·Tutorials·and·examples·using·this¶·*****200 *****·Tutorials·and·examples·using·this¶·*****
201 ····*·Example·IF_curve_Hodgkin_Huxley 
202 ····*·Example·COBAHH201 ····*·Example·COBAHH
 202 ····*·Example·IF_curve_Hodgkin_Huxley
203 ····*·Example·advanced/float_32_64_benchmark 
204 ····*·Example·frompapers/Rossant_et_al_2011bis 
205 ····*·Example·frompapers/Destexhe_et_al_1998203 ····*·Example·frompapers/Destexhe_et_al_1998
 204 ····*·Example·frompapers/Rossant_et_al_2011bis
206 ····*·Example·frompapers/Diesmann_et_al_1999205 ····*·Example·frompapers/Diesmann_et_al_1999
 206 ····*·Example·frompapers/Clopath_et_al_2010_homeostasis
207 ····*·Example·frompapers/Hindmarsh_Rose_1984207 ····*·Example·frompapers/Hindmarsh_Rose_1984
208 ····*·Example·frompapers/Clopath_et_al_2010_no_homeostasis208 ····*·Example·frompapers/Clopath_et_al_2010_no_homeostasis
209 ····*·Example·frompapers/Clopath_et_al_2010_homeostasis209 ····*·Example·advanced/float_32_64_benchmark
210 [Logo]210 [Logo]
211 ******·Brian_2·******211 ******·Brian_2·******
212 ****·Navigation·****212 ****·Navigation·****
213 ····*·Introduction213 ····*·Introduction
214 ····*·User’s_guide214 ····*·User’s_guide
215 ····*·Advanced_guide215 ····*·Advanced_guide
216 ····*·Examples216 ····*·Examples
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359 </dd></dl>359 </dd></dl>
  
360 </dd></dl>360 </dd></dl>
  
361 <div·class="section"·id="tutorials-and-examples-using-this">361 <div·class="section"·id="tutorials-and-examples-using-this">
362 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>362 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>
363 <ul·class="simple">363 <ul·class="simple">
 364 <li><p>Tutorial·<span·class="xref·std·std-doc">3-intro-to-brian-simulations</span></p></li>
364 <li><p>Tutorial·<span·class="xref·std·std-doc">1-intro-to-brian-neurons</span></p></li>365 <li><p>Tutorial·<span·class="xref·std·std-doc">1-intro-to-brian-neurons</span></p></li>
365 <li><p>Tutorial·<span·class="xref·std·std-doc">2-intro-to-brian-synapses</span></p></li>366 <li><p>Tutorial·<span·class="xref·std·std-doc">2-intro-to-brian-synapses</span></p></li>
366 <li><p>Tutorial·<span·class="xref·std·std-doc">3-intro-to-brian-simulations</span></p></li>367 <li><p>Example·<a·class="reference·internal"·href="../examples/reliability.html"><span·class="doc">reliability</span></a></p></li>
367 <li><p>Example·<a·class="reference·internal"·href="../examples/IF_curve_LIF.html"><span·class="doc">IF_curve_LIF</span></a></p></li>368 <li><p>Example·<a·class="reference·internal"·href="../examples/COBAHH.html"><span·class="doc">COBAHH</span></a></p></li>
368 <li><p>Example·<a·class="reference·internal"·href="../examples/adaptive_threshold.html"><span·class="doc">adaptive_threshold</span></a></p></li>369 <li><p>Example·<a·class="reference·internal"·href="../examples/non_reliability.html"><span·class="doc">non_reliability</span></a></p></li>
369 <li><p>Example·<a·class="reference·internal"·href="../examples/phase_locking.html"><span·class="doc">phase_locking</span></a></p></li>370 <li><p>Example·<a·class="reference·internal"·href="../examples/phase_locking.html"><span·class="doc">phase_locking</span></a></p></li>
370 <li><p>Example·<a·class="reference·internal"·href="../examples/CUBA.html"><span·class="doc">CUBA</span></a></p></li>371 <li><p>Example·<a·class="reference·internal"·href="../examples/CUBA.html"><span·class="doc">CUBA</span></a></p></li>
 372 <li><p>Example·<a·class="reference·internal"·href="../examples/adaptive_threshold.html"><span·class="doc">adaptive_threshold</span></a></p></li>
 373 <li><p>Example·<a·class="reference·internal"·href="../examples/IF_curve_LIF.html"><span·class="doc">IF_curve_LIF</span></a></p></li>
371 <li><p>Example·<a·class="reference·internal"·href="../examples/IF_curve_Hodgkin_Huxley.html"><span·class="doc">IF_curve_Hodgkin_Huxley</span></a></p></li>374 <li><p>Example·<a·class="reference·internal"·href="../examples/IF_curve_Hodgkin_Huxley.html"><span·class="doc">IF_curve_Hodgkin_Huxley</span></a></p></li>
 375 <li><p>Example·<a·class="reference·internal"·href="../examples/standalone.STDP_standalone.html"><span·class="doc">standalone/STDP_standalone</span></a></p></li>
 376 <li><p>Example·<a·class="reference·internal"·href="../examples/standalone.cuba_openmp.html"><span·class="doc">standalone/cuba_openmp</span></a></p></li>
372 <li><p>Example·<a·class="reference·internal"·href="../examples/non_reliability.html"><span·class="doc">non_reliability</span></a></p></li>377 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.synapses.html"><span·class="doc">synapses/synapses</span></a></p></li>
 378 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.jeffress.html"><span·class="doc">synapses/jeffress</span></a></p></li>
 379 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.gapjunctions.html"><span·class="doc">synapses/gapjunctions</span></a></p></li>
 380 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.spatial_connections.html"><span·class="doc">synapses/spatial_connections</span></a></p></li>
373 <li><p>Example·<a·class="reference·internal"·href="../examples/reliability.html"><span·class="doc">reliability</span></a></p></li>381 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.licklider.html"><span·class="doc">synapses/licklider</span></a></p></li>
 382 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.efficient_gaussian_connectivity.html"><span·class="doc">synapses/efficient_gaussian_connectivity</span></a></p></li>
374 <li><p>Example·<a·class="reference·internal"·href="../examples/COBAHH.html"><span·class="doc">COBAHH</span></a></p></li>383 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.STDP.html"><span·class="doc">synapses/STDP</span></a></p></li>
375 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.custom_events.html"><span·class="doc">advanced/custom_events</span></a></p></li> 
376 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.float_32_64_benchmark.html"><span·class="doc">advanced/float_32_64_benchmark</span></a></p></li> 
377 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.stochastic_odes.html"><span·class="doc">advanced/stochastic_odes</span></a></p></li>384 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.state_variables.html"><span·class="doc">synapses/state_variables</span></a></p></li>
378 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.opencv_movie.html"><span·class="doc">advanced/opencv_movie</span></a></p></li> 
379 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.exprel_function.html"><span·class="doc">advanced/exprel_function</span></a></p></li>385 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.nonlinear.html"><span·class="doc">synapses/nonlinear</span></a></p></li>
380 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.compare_GSL_to_conventional.html"><span·class="doc">advanced/compare_GSL_to_conventional</span></a></p></li>386 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Rothman_Manis_2003.html"><span·class="doc">frompapers/Rothman_Manis_2003</span></a></p></li>
381 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2004.html"><span·class="doc">frompapers/Brette_2004</span></a></p></li>387 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2004.html"><span·class="doc">frompapers/Brette_2004</span></a></p></li>
 388 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Vogels_et_al_2011.html"><span·class="doc">frompapers/Vogels_et_al_2011</span></a></p></li>
382 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Wang_Buszaki_1996.html"><span·class="doc">frompapers/Wang_Buszaki_1996</span></a></p></li>389 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brunel_Hakim_1999.html"><span·class="doc">frompapers/Brunel_Hakim_1999</span></a></p></li>
383 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Rossant_et_al_2011bis.html"><span·class="doc">frompapers/Rossant_et_al_2011bis</span></a></p></li>390 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Rossant_et_al_2011bis.html"><span·class="doc">frompapers/Rossant_et_al_2011bis</span></a></p></li>
384 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Kremer_et_al_2011_barrel_cortex.html"><span·class="doc">frompapers/Kremer_et_al_2011_barrel_cortex</span></a></p></li> 
385 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brunel_Wang_2001.html"><span·class="doc">frompapers/Brunel_Wang_2001</span></a></p></li> 
386 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Diesmann_et_al_1999.html"><span·class="doc">frompapers/Diesmann_et_al_1999</span></a></p></li> 
387 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Hindmarsh_Rose_1984.html"><span·class="doc">frompapers/Hindmarsh_Rose_1984</span></a></p></li> 
388 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_Gerstner_2005.html"><span·class="doc">frompapers/Brette_Gerstner_2005</span></a></p></li> 
389 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Platkiewicz_Brette_2011.html"><span·class="doc">frompapers/Platkiewicz_Brette_2011</span></a></p></li> 
390 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Rothman_Manis_2003.html"><span·class="doc">frompapers/Rothman_Manis_2003</span></a></p></li> 
391 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Clopath_et_al_2010_no_homeostasis.html"><span·class="doc">frompapers/Clopath_et_al_2010_no_homeostasis</span></a></p></li> 
392 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Morris_Lecar_1981.html"><span·class="doc">frompapers/Morris_Lecar_1981</span></a></p></li>391 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Morris_Lecar_1981.html"><span·class="doc">frompapers/Morris_Lecar_1981</span></a></p></li>
393 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_Guigon_2003.html"><span·class="doc">frompapers/Brette_Guigon_2003</span></a></p></li> 
394 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brunel_Hakim_1999.html"><span·class="doc">frompapers/Brunel_Hakim_1999</span></a></p></li>392 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Diesmann_et_al_1999.html"><span·class="doc">frompapers/Diesmann_et_al_1999</span></a></p></li>
395 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Izhikevich_2007.html"><span·class="doc">frompapers/Izhikevich_2007</span></a></p></li> 
396 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Sturzl_et_al_2000.html"><span·class="doc">frompapers/Sturzl_et_al_2000</span></a></p></li>393 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Sturzl_et_al_2000.html"><span·class="doc">frompapers/Sturzl_et_al_2000</span></a></p></li>
 394 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_Gerstner_2005.html"><span·class="doc">frompapers/Brette_Gerstner_2005</span></a></p></li>
 395 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Wang_Buszaki_1996.html"><span·class="doc">frompapers/Wang_Buszaki_1996</span></a></p></li>
 396 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brunel_Wang_2001.html"><span·class="doc">frompapers/Brunel_Wang_2001</span></a></p></li>
397 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Clopath_et_al_2010_homeostasis.html"><span·class="doc">frompapers/Clopath_et_al_2010_homeostasis</span></a></p></li>397 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Clopath_et_al_2010_homeostasis.html"><span·class="doc">frompapers/Clopath_et_al_2010_homeostasis</span></a></p></li>
398 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Touboul_Brette_2008.html"><span·class="doc">frompapers/Touboul_Brette_2008</span></a></p></li>398 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Touboul_Brette_2008.html"><span·class="doc">frompapers/Touboul_Brette_2008</span></a></p></li>
 399 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Kremer_et_al_2011_barrel_cortex.html"><span·class="doc">frompapers/Kremer_et_al_2011_barrel_cortex</span></a></p></li>
 400 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_Guigon_2003.html"><span·class="doc">frompapers/Brette_Guigon_2003</span></a></p></li>
 401 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Hindmarsh_Rose_1984.html"><span·class="doc">frompapers/Hindmarsh_Rose_1984</span></a></p></li>
 402 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Izhikevich_2007.html"><span·class="doc">frompapers/Izhikevich_2007</span></a></p></li>
399 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Vogels_et_al_2011.html"><span·class="doc">frompapers/Vogels_et_al_2011</span></a></p></li>403 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Platkiewicz_Brette_2011.html"><span·class="doc">frompapers/Platkiewicz_Brette_2011</span></a></p></li>
400 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_2_gchi_astrocyte.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte</span></a></p></li> 
401 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_1_COBA.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_1_COBA</span></a></p></li> 
402 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_5_astro_ring.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_5_astro_ring</span></a></p></li> 
403 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_6_COBA_with_astro.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro</span></a></p></li> 
404 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_4_synrel.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_4_synrel</span></a></p></li>404 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Clopath_et_al_2010_no_homeostasis.html"><span·class="doc">frompapers/Clopath_et_al_2010_no_homeostasis</span></a></p></li>
405 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_4_rsmean.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_4_rsmean</span></a></p></li>405 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_4_rsmean.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_4_rsmean</span></a></p></li>
406 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_3_io_synapse.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_3_io_synapse</span></a></p></li>406 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_3_io_synapse.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_3_io_synapse</span></a></p></li>
 407 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_4_synrel.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_4_synrel</span></a></p></li>
 408 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_6_COBA_with_astro.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro</span></a></p></li>
 409 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_1_COBA.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_1_COBA</span></a></p></li>
 410 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_5_astro_ring.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_5_astro_ring</span></a></p></li>
 411 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_2_gchi_astrocyte.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte</span></a></p></li>
407 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.nonlinear.html"><span·class="doc">synapses/nonlinear</span></a></p></li> 
408 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.gapjunctions.html"><span·class="doc">synapses/gapjunctions</span></a></p></li> 
409 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.efficient_gaussian_connectivity.html"><span·class="doc">synapses/efficient_gaussian_connectivity</span></a></p></li> 
410 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.synapses.html"><span·class="doc">synapses/synapses</span></a></p></li> 
411 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.STDP.html"><span·class="doc">synapses/STDP</span></a></p></li> 
412 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.licklider.html"><span·class="doc">synapses/licklider</span></a></p></li> 
413 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.jeffress.html"><span·class="doc">synapses/jeffress</span></a></p></li> 
414 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.state_variables.html"><span·class="doc">synapses/state_variables</span></a></p></li> 
415 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.spatial_connections.html"><span·class="doc">synapses/spatial_connections</span></a></p></li> 
416 <li><p>Example·<a·class="reference·internal"·href="../examples/standalone.cuba_openmp.html"><span·class="doc">standalone/cuba_openmp</span></a></p></li> 
417 <li><p>Example·<a·class="reference·internal"·href="../examples/standalone.STDP_standalone.html"><span·class="doc">standalone/STDP_standalone</span></a></p></li> 
418 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.lfp.html"><span·class="doc">compartmental/lfp</span></a></p></li>412 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.lfp.html"><span·class="doc">compartmental/lfp</span></a></p></li>
419 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_with_inputs2.html"><span·class="doc">compartmental/bipolar_with_inputs2</span></a></p></li>413 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_with_inputs2.html"><span·class="doc">compartmental/bipolar_with_inputs2</span></a></p></li>
420 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_with_inputs.html"><span·class="doc">compartmental/bipolar_with_inputs</span></a></p></li>414 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_with_inputs.html"><span·class="doc">compartmental/bipolar_with_inputs</span></a></p></li>
 415 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.exprel_function.html"><span·class="doc">advanced/exprel_function</span></a></p></li>
 416 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.opencv_movie.html"><span·class="doc">advanced/opencv_movie</span></a></p></li>
 417 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.stochastic_odes.html"><span·class="doc">advanced/stochastic_odes</span></a></p></li>
 418 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.compare_GSL_to_conventional.html"><span·class="doc">advanced/compare_GSL_to_conventional</span></a></p></li>
 419 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.float_32_64_benchmark.html"><span·class="doc">advanced/float_32_64_benchmark</span></a></p></li>
 420 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.custom_events.html"><span·class="doc">advanced/custom_events</span></a></p></li>
421 </ul>421 </ul>
422 </div>422 </div>
423 </div>423 </div>
  
  
424 ··········</div>424 ··········</div>
425 ········</div>425 ········</div>
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184 ·······················the·namespace.184 ·······················the·namespace.
185 ··················Returns·:185 ··················Returns·:
186 ··················â€”—-·:186 ··················â€”—-·:
187 ··················var·:·VariableView·or·scalar·value187 ··················var·:·VariableView·or·scalar·value
188 ·······················The·state·variable’s·value·that·can·be·indexed188 ·······················The·state·variable’s·value·that·can·be·indexed
189 ·······················(for·non-scalar·values).189 ·······················(for·non-scalar·values).
190 *****·Tutorials·and·examples·using·this¶·*****190 *****·Tutorials·and·examples·using·this¶·*****
 191 ····*·Tutorial·3-intro-to-brian-simulations
191 ····*·Tutorial·1-intro-to-brian-neurons192 ····*·Tutorial·1-intro-to-brian-neurons
192 ····*·Tutorial·2-intro-to-brian-synapses193 ····*·Tutorial·2-intro-to-brian-synapses
193 ····*·Tutorial·3-intro-to-brian-simulations 
194 ····*·Example·IF_curve_LIF 
195 ····*·Example·adaptive_threshold194 ····*·Example·reliability
 195 ····*·Example·COBAHH
 196 ····*·Example·non_reliability
196 ····*·Example·phase_locking197 ····*·Example·phase_locking
197 ····*·Example·CUBA198 ····*·Example·CUBA
 199 ····*·Example·adaptive_threshold
 200 ····*·Example·IF_curve_LIF
198 ····*·Example·IF_curve_Hodgkin_Huxley201 ····*·Example·IF_curve_Hodgkin_Huxley
199 ····*·Example·non_reliability 
200 ····*·Example·reliability 
201 ····*·Example·COBAHH 
202 ····*·Example·advanced/custom_events 
203 ····*·Example·advanced/float_32_64_benchmark 
204 ····*·Example·advanced/stochastic_odes 
205 ····*·Example·advanced/opencv_movie 
206 ····*·Example·advanced/exprel_function 
207 ····*·Example·advanced/compare_GSL_to_conventional202 ····*·Example·standalone/STDP_standalone
 203 ····*·Example·standalone/cuba_openmp
 204 ····*·Example·synapses/synapses
 205 ····*·Example·synapses/jeffress
 206 ····*·Example·synapses/gapjunctions
 207 ····*·Example·synapses/spatial_connections
 208 ····*·Example·synapses/licklider
 209 ····*·Example·synapses/efficient_gaussian_connectivity
 210 ····*·Example·synapses/STDP
 211 ····*·Example·synapses/state_variables
 212 ····*·Example·synapses/nonlinear
 213 ····*·Example·frompapers/Rothman_Manis_2003
208 ····*·Example·frompapers/Brette_2004214 ····*·Example·frompapers/Brette_2004
 215 ····*·Example·frompapers/Vogels_et_al_2011
209 ····*·Example·frompapers/Wang_Buszaki_1996216 ····*·Example·frompapers/Brunel_Hakim_1999
210 ····*·Example·frompapers/Rossant_et_al_2011bis217 ····*·Example·frompapers/Rossant_et_al_2011bis
211 ····*·Example·frompapers/Kremer_et_al_2011_barrel_cortex 
212 ····*·Example·frompapers/Brunel_Wang_2001 
213 ····*·Example·frompapers/Diesmann_et_al_1999 
214 ····*·Example·frompapers/Hindmarsh_Rose_1984 
215 ····*·Example·frompapers/Brette_Gerstner_2005 
216 ····*·Example·frompapers/Platkiewicz_Brette_2011 
217 ····*·Example·frompapers/Rothman_Manis_2003 
218 ····*·Example·frompapers/Clopath_et_al_2010_no_homeostasis 
219 ····*·Example·frompapers/Morris_Lecar_1981218 ····*·Example·frompapers/Morris_Lecar_1981
220 ····*·Example·frompapers/Brette_Guigon_2003 
221 ····*·Example·frompapers/Brunel_Hakim_1999219 ····*·Example·frompapers/Diesmann_et_al_1999
222 ····*·Example·frompapers/Izhikevich_2007 
223 ····*·Example·frompapers/Sturzl_et_al_2000220 ····*·Example·frompapers/Sturzl_et_al_2000
 221 ····*·Example·frompapers/Brette_Gerstner_2005
 222 ····*·Example·frompapers/Wang_Buszaki_1996
 223 ····*·Example·frompapers/Brunel_Wang_2001
224 ····*·Example·frompapers/Clopath_et_al_2010_homeostasis224 ····*·Example·frompapers/Clopath_et_al_2010_homeostasis
225 ····*·Example·frompapers/Touboul_Brette_2008225 ····*·Example·frompapers/Touboul_Brette_2008
 226 ····*·Example·frompapers/Kremer_et_al_2011_barrel_cortex
 227 ····*·Example·frompapers/Brette_Guigon_2003
 228 ····*·Example·frompapers/Hindmarsh_Rose_1984
 229 ····*·Example·frompapers/Izhikevich_2007
226 ····*·Example·frompapers/Vogels_et_al_2011230 ····*·Example·frompapers/Platkiewicz_Brette_2011
 231 ····*·Example·frompapers/Clopath_et_al_2010_no_homeostasis
227 ····*·Example·frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte 
228 ····*·Example·frompapers/Stimberg_et_al_2018/example_1_COBA 
229 ····*·Example·frompapers/Stimberg_et_al_2018/example_5_astro_ring 
230 ····*·Example·frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro 
231 ····*·Example·frompapers/Stimberg_et_al_2018/example_4_synrel 
232 ····*·Example·frompapers/Stimberg_et_al_2018/example_4_rsmean232 ····*·Example·frompapers/Stimberg_et_al_2018/example_4_rsmean
233 ····*·Example·frompapers/Stimberg_et_al_2018/example_3_io_synapse233 ····*·Example·frompapers/Stimberg_et_al_2018/example_3_io_synapse
 234 ····*·Example·frompapers/Stimberg_et_al_2018/example_4_synrel
 235 ····*·Example·frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro
 236 ····*·Example·frompapers/Stimberg_et_al_2018/example_1_COBA
 237 ····*·Example·frompapers/Stimberg_et_al_2018/example_5_astro_ring
 238 ····*·Example·frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte
234 ····*·Example·synapses/nonlinear 
235 ····*·Example·synapses/gapjunctions 
236 ····*·Example·synapses/efficient_gaussian_connectivity 
237 ····*·Example·synapses/synapses 
238 ····*·Example·synapses/STDP 
239 ····*·Example·synapses/licklider 
240 ····*·Example·synapses/jeffress 
241 ····*·Example·synapses/state_variables 
242 ····*·Example·synapses/spatial_connections 
243 ····*·Example·standalone/cuba_openmp 
244 ····*·Example·standalone/STDP_standalone 
245 ····*·Example·compartmental/lfp239 ····*·Example·compartmental/lfp
246 ····*·Example·compartmental/bipolar_with_inputs2240 ····*·Example·compartmental/bipolar_with_inputs2
247 ····*·Example·compartmental/bipolar_with_inputs241 ····*·Example·compartmental/bipolar_with_inputs
 242 ····*·Example·advanced/exprel_function
 243 ····*·Example·advanced/opencv_movie
 244 ····*·Example·advanced/stochastic_odes
 245 ····*·Example·advanced/compare_GSL_to_conventional
 246 ····*·Example·advanced/float_32_64_benchmark
 247 ····*·Example·advanced/custom_events
248 [Logo]248 [Logo]
249 ******·Brian_2·******249 ******·Brian_2·******
250 ****·Navigation·****250 ****·Navigation·****
251 ····*·Introduction251 ····*·Introduction
252 ····*·User’s_guide252 ····*·User’s_guide
253 ····*·Advanced_guide253 ····*·Advanced_guide
254 ····*·Examples254 ····*·Examples
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126 </dd></dl>126 </dd></dl>
  
127 <div·class="section"·id="tutorials-and-examples-using-this">127 <div·class="section"·id="tutorials-and-examples-using-this">
128 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>128 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>
129 <ul·class="simple">129 <ul·class="simple">
130 <li><p>Tutorial·<span·class="xref·std·std-doc">3-intro-to-brian-simulations</span></p></li>130 <li><p>Tutorial·<span·class="xref·std·std-doc">3-intro-to-brian-simulations</span></p></li>
131 <li><p>Example·<a·class="reference·internal"·href="../examples/adaptive_threshold.html"><span·class="doc">adaptive_threshold</span></a></p></li>131 <li><p>Example·<a·class="reference·internal"·href="../examples/adaptive_threshold.html"><span·class="doc">adaptive_threshold</span></a></p></li>
132 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.custom_events.html"><span·class="doc">advanced/custom_events</span></a></p></li> 
133 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_4_synrel.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_4_synrel</span></a></p></li> 
134 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_4_rsmean.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_4_rsmean</span></a></p></li> 
135 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.STDP.html"><span·class="doc">synapses/STDP</span></a></p></li> 
136 <li><p>Example·<a·class="reference·internal"·href="../examples/standalone.STDP_standalone.html"><span·class="doc">standalone/STDP_standalone</span></a></p></li>132 <li><p>Example·<a·class="reference·internal"·href="../examples/standalone.STDP_standalone.html"><span·class="doc">standalone/STDP_standalone</span></a></p></li>
 133 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.STDP.html"><span·class="doc">synapses/STDP</span></a></p></li>
 134 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_4_rsmean.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_4_rsmean</span></a></p></li>
 135 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_4_synrel.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_4_synrel</span></a></p></li>
 136 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.custom_events.html"><span·class="doc">advanced/custom_events</span></a></p></li>
137 </ul>137 </ul>
138 </div>138 </div>
139 </div>139 </div>
  
  
140 ··········</div>140 ··········</div>
141 ········</div>141 ········</div>
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48 ············The·spikes·returned·by·the·most·recent·thresholding·operation.48 ············The·spikes·returned·by·the·most·recent·thresholding·operation.
49 ········before_run(run_namespace=None)[source]¶49 ········before_run(run_namespace=None)[source]¶
50 ············Optional·method·to·prepare·the·object·before·a·run.50 ············Optional·method·to·prepare·the·object·before·a·run.
51 ············Called·by·Network.after_run·before·the·main·simulation·loop·starts.51 ············Called·by·Network.after_run·before·the·main·simulation·loop·starts.
52 *****·Tutorials·and·examples·using·this¶·*****52 *****·Tutorials·and·examples·using·this¶·*****
53 ····*·Tutorial·3-intro-to-brian-simulations53 ····*·Tutorial·3-intro-to-brian-simulations
54 ····*·Example·adaptive_threshold54 ····*·Example·adaptive_threshold
55 ····*·Example·advanced/custom_events 
56 ····*·Example·frompapers/Stimberg_et_al_2018/example_4_synrel 
57 ····*·Example·frompapers/Stimberg_et_al_2018/example_4_rsmean 
58 ····*·Example·synapses/STDP 
59 ····*·Example·standalone/STDP_standalone55 ····*·Example·standalone/STDP_standalone
 56 ····*·Example·synapses/STDP
 57 ····*·Example·frompapers/Stimberg_et_al_2018/example_4_rsmean
 58 ····*·Example·frompapers/Stimberg_et_al_2018/example_4_synrel
 59 ····*·Example·advanced/custom_events
60 [Logo]60 [Logo]
61 ******·Brian_2·******61 ******·Brian_2·******
62 ****·Navigation·****62 ****·Navigation·****
63 ····*·Introduction63 ····*·Introduction
64 ····*·User’s_guide64 ····*·User’s_guide
65 ····*·Advanced_guide65 ····*·Advanced_guide
66 ····*·Examples66 ····*·Examples
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153 </dd></dl>153 </dd></dl>
  
154 <div·class="section"·id="tutorials-and-examples-using-this">154 <div·class="section"·id="tutorials-and-examples-using-this">
155 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>155 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>
156 <ul·class="simple">156 <ul·class="simple">
157 <li><p>Tutorial·<span·class="xref·std·std-doc">3-intro-to-brian-simulations</span></p></li>157 <li><p>Tutorial·<span·class="xref·std·std-doc">3-intro-to-brian-simulations</span></p></li>
158 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brunel_Wang_2001.html"><span·class="doc">frompapers/Brunel_Wang_2001</span></a></p></li>158 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.jeffress.html"><span·class="doc">synapses/jeffress</span></a></p></li>
159 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Sturzl_et_al_2000.html"><span·class="doc">frompapers/Sturzl_et_al_2000</span></a></p></li>159 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Sturzl_et_al_2000.html"><span·class="doc">frompapers/Sturzl_et_al_2000</span></a></p></li>
160 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_6_COBA_with_astro.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro</span></a></p></li>160 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brunel_Wang_2001.html"><span·class="doc">frompapers/Brunel_Wang_2001</span></a></p></li>
161 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_4_synrel.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_4_synrel</span></a></p></li>161 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_4_synrel.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_4_synrel</span></a></p></li>
162 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.jeffress.html"><span·class="doc">synapses/jeffress</span></a></p></li>162 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_6_COBA_with_astro.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro</span></a></p></li>
163 </ul>163 </ul>
164 </div>164 </div>
165 </div>165 </div>
  
  
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167 ········</div>167 ········</div>
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85 ·······················The·length·of·a·timestep·(without·units).85 ·······················The·length·of·a·timestep·(without·units).
86 ··············Returns86 ··············Returns
87 ··················constant·:·bool87 ··················constant·:·bool
88 ·······················Whether·the·results·of·this·function·can·be88 ·······················Whether·the·results·of·this·function·can·be
89 ·······················considered·constant·over·one·timestep·of·length·dt.89 ·······················considered·constant·over·one·timestep·of·length·dt.
90 *****·Tutorials·and·examples·using·this¶·*****90 *****·Tutorials·and·examples·using·this¶·*****
91 ····*·Tutorial·3-intro-to-brian-simulations91 ····*·Tutorial·3-intro-to-brian-simulations
92 ····*·Example·frompapers/Brunel_Wang_200192 ····*·Example·synapses/jeffress
93 ····*·Example·frompapers/Sturzl_et_al_200093 ····*·Example·frompapers/Sturzl_et_al_2000
94 ····*·Example·frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro94 ····*·Example·frompapers/Brunel_Wang_2001
95 ····*·Example·frompapers/Stimberg_et_al_2018/example_4_synrel95 ····*·Example·frompapers/Stimberg_et_al_2018/example_4_synrel
96 ····*·Example·synapses/jeffress96 ····*·Example·frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro
97 [Logo]97 [Logo]
98 ******·Brian_2·******98 ******·Brian_2·******
99 ****·Navigation·****99 ****·Navigation·****
100 ····*·Introduction100 ····*·Introduction
101 ····*·User’s_guide101 ····*·User’s_guide
102 ····*·Advanced_guide102 ····*·Advanced_guide
103 ····*·Examples103 ····*·Examples
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156 </dd></dl>156 </dd></dl>
  
157 </dd></dl>157 </dd></dl>
  
158 <div·class="section"·id="tutorials-and-examples-using-this">158 <div·class="section"·id="tutorials-and-examples-using-this">
159 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>159 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>
160 <ul·class="simple">160 <ul·class="simple">
161 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brunel_Wang_2001.html"><span·class="doc">frompapers/Brunel_Wang_2001</span></a></p></li> 
162 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brunel_Hakim_1999.html"><span·class="doc">frompapers/Brunel_Hakim_1999</span></a></p></li>161 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brunel_Hakim_1999.html"><span·class="doc">frompapers/Brunel_Hakim_1999</span></a></p></li>
 162 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brunel_Wang_2001.html"><span·class="doc">frompapers/Brunel_Wang_2001</span></a></p></li>
163 </ul>163 </ul>
164 </div>164 </div>
165 </div>165 </div>
  
  
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167 ········</div>167 ········</div>
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72 ·······················The·population·rate·in·Hz,·smoothed·with·the·given72 ·······················The·population·rate·in·Hz,·smoothed·with·the·given
73 ·······················window.·Note·that·the·rates·are·smoothed·and·not73 ·······················window.·Note·that·the·rates·are·smoothed·and·not
74 ·······················re-binned,·i.e.·the·length·of·the·returned·array·is74 ·······················re-binned,·i.e.·the·length·of·the·returned·array·is
75 ·······················the·same·as·the·length·of·the·rate·attribute·and75 ·······················the·same·as·the·length·of·the·rate·attribute·and
76 ·······················can·be·plotted·against·the·PopulationRateMonitor76 ·······················can·be·plotted·against·the·PopulationRateMonitor
77 ·······················â€˜s·t·attribute.77 ·······················â€˜s·t·attribute.
78 *****·Tutorials·and·examples·using·this¶·*****78 *****·Tutorials·and·examples·using·this¶·*****
79 ····*·Example·frompapers/Brunel_Wang_2001 
80 ····*·Example·frompapers/Brunel_Hakim_199979 ····*·Example·frompapers/Brunel_Hakim_1999
 80 ····*·Example·frompapers/Brunel_Wang_2001
81 [Logo]81 [Logo]
82 ******·Brian_2·******82 ******·Brian_2·******
83 ****·Navigation·****83 ****·Navigation·****
84 ····*·Introduction84 ····*·Introduction
85 ····*·User’s_guide85 ····*·User’s_guide
86 ····*·Advanced_guide86 ····*·Advanced_guide
87 ····*·Examples87 ····*·Examples
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264 </dd></dl>264 </dd></dl>
  
265 </dd></dl>265 </dd></dl>
  
266 <div·class="section"·id="tutorials-and-examples-using-this">266 <div·class="section"·id="tutorials-and-examples-using-this">
267 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>267 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>
268 <ul·class="simple">268 <ul·class="simple">
269 <li><p>Tutorial·<span·class="xref·std·std-doc">1-intro-to-brian-neurons</span></p></li> 
270 <li><p>Tutorial·<span·class="xref·std·std-doc">3-intro-to-brian-simulations</span></p></li>269 <li><p>Tutorial·<span·class="xref·std·std-doc">3-intro-to-brian-simulations</span></p></li>
 270 <li><p>Tutorial·<span·class="xref·std·std-doc">1-intro-to-brian-neurons</span></p></li>
271 <li><p>Example·<a·class="reference·internal"·href="../examples/IF_curve_LIF.html"><span·class="doc">IF_curve_LIF</span></a></p></li>271 <li><p>Example·<a·class="reference·internal"·href="../examples/reliability.html"><span·class="doc">reliability</span></a></p></li>
272 <li><p>Example·<a·class="reference·internal"·href="../examples/adaptive_threshold.html"><span·class="doc">adaptive_threshold</span></a></p></li>272 <li><p>Example·<a·class="reference·internal"·href="../examples/non_reliability.html"><span·class="doc">non_reliability</span></a></p></li>
273 <li><p>Example·<a·class="reference·internal"·href="../examples/phase_locking.html"><span·class="doc">phase_locking</span></a></p></li>273 <li><p>Example·<a·class="reference·internal"·href="../examples/phase_locking.html"><span·class="doc">phase_locking</span></a></p></li>
274 <li><p>Example·<a·class="reference·internal"·href="../examples/CUBA.html"><span·class="doc">CUBA</span></a></p></li>274 <li><p>Example·<a·class="reference·internal"·href="../examples/CUBA.html"><span·class="doc">CUBA</span></a></p></li>
 275 <li><p>Example·<a·class="reference·internal"·href="../examples/adaptive_threshold.html"><span·class="doc">adaptive_threshold</span></a></p></li>
 276 <li><p>Example·<a·class="reference·internal"·href="../examples/IF_curve_LIF.html"><span·class="doc">IF_curve_LIF</span></a></p></li>
275 <li><p>Example·<a·class="reference·internal"·href="../examples/IF_curve_Hodgkin_Huxley.html"><span·class="doc">IF_curve_Hodgkin_Huxley</span></a></p></li>277 <li><p>Example·<a·class="reference·internal"·href="../examples/IF_curve_Hodgkin_Huxley.html"><span·class="doc">IF_curve_Hodgkin_Huxley</span></a></p></li>
 278 <li><p>Example·<a·class="reference·internal"·href="../examples/standalone.STDP_standalone.html"><span·class="doc">standalone/STDP_standalone</span></a></p></li>
 279 <li><p>Example·<a·class="reference·internal"·href="../examples/standalone.cuba_openmp.html"><span·class="doc">standalone/cuba_openmp</span></a></p></li>
276 <li><p>Example·<a·class="reference·internal"·href="../examples/non_reliability.html"><span·class="doc">non_reliability</span></a></p></li>280 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.jeffress.html"><span·class="doc">synapses/jeffress</span></a></p></li>
277 <li><p>Example·<a·class="reference·internal"·href="../examples/reliability.html"><span·class="doc">reliability</span></a></p></li>281 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.licklider.html"><span·class="doc">synapses/licklider</span></a></p></li>
278 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.custom_events.html"><span·class="doc">advanced/custom_events</span></a></p></li> 
279 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.opencv_movie.html"><span·class="doc">advanced/opencv_movie</span></a></p></li>282 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.STDP.html"><span·class="doc">synapses/STDP</span></a></p></li>
280 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2004.html"><span·class="doc">frompapers/Brette_2004</span></a></p></li>283 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2004.html"><span·class="doc">frompapers/Brette_2004</span></a></p></li>
 284 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Vogels_et_al_2011.html"><span·class="doc">frompapers/Vogels_et_al_2011</span></a></p></li>
 285 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brunel_Hakim_1999.html"><span·class="doc">frompapers/Brunel_Hakim_1999</span></a></p></li>
281 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Rossant_et_al_2011bis.html"><span·class="doc">frompapers/Rossant_et_al_2011bis</span></a></p></li>286 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Rossant_et_al_2011bis.html"><span·class="doc">frompapers/Rossant_et_al_2011bis</span></a></p></li>
282 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brunel_Wang_2001.html"><span·class="doc">frompapers/Brunel_Wang_2001</span></a></p></li> 
283 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Diesmann_et_al_1999.html"><span·class="doc">frompapers/Diesmann_et_al_1999</span></a></p></li>287 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Diesmann_et_al_1999.html"><span·class="doc">frompapers/Diesmann_et_al_1999</span></a></p></li>
 288 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Sturzl_et_al_2000.html"><span·class="doc">frompapers/Sturzl_et_al_2000</span></a></p></li>
284 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_Gerstner_2005.html"><span·class="doc">frompapers/Brette_Gerstner_2005</span></a></p></li>289 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_Gerstner_2005.html"><span·class="doc">frompapers/Brette_Gerstner_2005</span></a></p></li>
 290 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brunel_Wang_2001.html"><span·class="doc">frompapers/Brunel_Wang_2001</span></a></p></li>
285 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Platkiewicz_Brette_2011.html"><span·class="doc">frompapers/Platkiewicz_Brette_2011</span></a></p></li>291 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Touboul_Brette_2008.html"><span·class="doc">frompapers/Touboul_Brette_2008</span></a></p></li>
286 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_Guigon_2003.html"><span·class="doc">frompapers/Brette_Guigon_2003</span></a></p></li>292 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_Guigon_2003.html"><span·class="doc">frompapers/Brette_Guigon_2003</span></a></p></li>
287 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brunel_Hakim_1999.html"><span·class="doc">frompapers/Brunel_Hakim_1999</span></a></p></li> 
288 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Izhikevich_2007.html"><span·class="doc">frompapers/Izhikevich_2007</span></a></p></li>293 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Izhikevich_2007.html"><span·class="doc">frompapers/Izhikevich_2007</span></a></p></li>
289 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Sturzl_et_al_2000.html"><span·class="doc">frompapers/Sturzl_et_al_2000</span></a></p></li> 
290 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Touboul_Brette_2008.html"><span·class="doc">frompapers/Touboul_Brette_2008</span></a></p></li>294 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Platkiewicz_Brette_2011.html"><span·class="doc">frompapers/Platkiewicz_Brette_2011</span></a></p></li>
291 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Vogels_et_al_2011.html"><span·class="doc">frompapers/Vogels_et_al_2011</span></a></p></li> 
292 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_1_COBA.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_1_COBA</span></a></p></li> 
293 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_6_COBA_with_astro.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro</span></a></p></li> 
294 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig5A.html"><span·class="doc">frompapers/Brette_2012/Fig5A</span></a></p></li>295 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig5A.html"><span·class="doc">frompapers/Brette_2012/Fig5A</span></a></p></li>
 296 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_6_COBA_with_astro.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro</span></a></p></li>
 297 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_1_COBA.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_1_COBA</span></a></p></li>
295 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.STDP.html"><span·class="doc">synapses/STDP</span></a></p></li> 
296 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.licklider.html"><span·class="doc">synapses/licklider</span></a></p></li> 
297 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.jeffress.html"><span·class="doc">synapses/jeffress</span></a></p></li> 
298 <li><p>Example·<a·class="reference·internal"·href="../examples/standalone.cuba_openmp.html"><span·class="doc">standalone/cuba_openmp</span></a></p></li> 
299 <li><p>Example·<a·class="reference·internal"·href="../examples/standalone.STDP_standalone.html"><span·class="doc">standalone/STDP_standalone</span></a></p></li> 
300 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.hh_with_spikes.html"><span·class="doc">compartmental/hh_with_spikes</span></a></p></li>298 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.hh_with_spikes.html"><span·class="doc">compartmental/hh_with_spikes</span></a></p></li>
 299 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.opencv_movie.html"><span·class="doc">advanced/opencv_movie</span></a></p></li>
 300 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.custom_events.html"><span·class="doc">advanced/custom_events</span></a></p></li>
301 </ul>301 </ul>
302 </div>302 </div>
303 </div>303 </div>
  
  
304 ··········</div>304 ··········</div>
305 ········</div>305 ········</div>
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154 ············>>>·run(10*ms)154 ············>>>·run(10*ms)
155 ············>>>·counter2_values·=·mon.values('counter2')155 ············>>>·counter2_values·=·mon.values('counter2')
156 ············>>>·print(counter2_values[0])156 ············>>>·print(counter2_values[0])
157 ············[·50·100]157 ············[·50·100]
158 ············>>>·print(counter2_values[1])158 ············>>>·print(counter2_values[1])
159 ············[100]159 ············[100]
160 *****·Tutorials·and·examples·using·this¶·*****160 *****·Tutorials·and·examples·using·this¶·*****
161 ····*·Tutorial·1-intro-to-brian-neurons 
162 ····*·Tutorial·3-intro-to-brian-simulations161 ····*·Tutorial·3-intro-to-brian-simulations
163 ····*·Example·IF_curve_LIF 
164 ····*·Example·adaptive_threshold162 ····*·Tutorial·1-intro-to-brian-neurons
 163 ····*·Example·reliability
 164 ····*·Example·non_reliability
165 ····*·Example·phase_locking165 ····*·Example·phase_locking
166 ····*·Example·CUBA166 ····*·Example·CUBA
 167 ····*·Example·adaptive_threshold
 168 ····*·Example·IF_curve_LIF
167 ····*·Example·IF_curve_Hodgkin_Huxley169 ····*·Example·IF_curve_Hodgkin_Huxley
168 ····*·Example·non_reliability 
169 ····*·Example·reliability 
170 ····*·Example·advanced/custom_events 
171 ····*·Example·advanced/opencv_movie170 ····*·Example·standalone/STDP_standalone
 171 ····*·Example·standalone/cuba_openmp
 172 ····*·Example·synapses/jeffress
 173 ····*·Example·synapses/licklider
 174 ····*·Example·synapses/STDP
172 ····*·Example·frompapers/Brette_2004175 ····*·Example·frompapers/Brette_2004
 176 ····*·Example·frompapers/Vogels_et_al_2011
 177 ····*·Example·frompapers/Brunel_Hakim_1999
173 ····*·Example·frompapers/Rossant_et_al_2011bis178 ····*·Example·frompapers/Rossant_et_al_2011bis
174 ····*·Example·frompapers/Brunel_Wang_2001 
175 ····*·Example·frompapers/Diesmann_et_al_1999179 ····*·Example·frompapers/Diesmann_et_al_1999
 180 ····*·Example·frompapers/Sturzl_et_al_2000
176 ····*·Example·frompapers/Brette_Gerstner_2005181 ····*·Example·frompapers/Brette_Gerstner_2005
 182 ····*·Example·frompapers/Brunel_Wang_2001
177 ····*·Example·frompapers/Platkiewicz_Brette_2011183 ····*·Example·frompapers/Touboul_Brette_2008
178 ····*·Example·frompapers/Brette_Guigon_2003184 ····*·Example·frompapers/Brette_Guigon_2003
179 ····*·Example·frompapers/Brunel_Hakim_1999 
180 ····*·Example·frompapers/Izhikevich_2007185 ····*·Example·frompapers/Izhikevich_2007
181 ····*·Example·frompapers/Sturzl_et_al_2000 
182 ····*·Example·frompapers/Touboul_Brette_2008186 ····*·Example·frompapers/Platkiewicz_Brette_2011
183 ····*·Example·frompapers/Vogels_et_al_2011 
184 ····*·Example·frompapers/Stimberg_et_al_2018/example_1_COBA 
185 ····*·Example·frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro 
186 ····*·Example·frompapers/Brette_2012/Fig5A187 ····*·Example·frompapers/Brette_2012/Fig5A
 188 ····*·Example·frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro
 189 ····*·Example·frompapers/Stimberg_et_al_2018/example_1_COBA
187 ····*·Example·synapses/STDP 
188 ····*·Example·synapses/licklider 
189 ····*·Example·synapses/jeffress 
190 ····*·Example·standalone/cuba_openmp 
191 ····*·Example·standalone/STDP_standalone 
192 ····*·Example·compartmental/hh_with_spikes190 ····*·Example·compartmental/hh_with_spikes
 191 ····*·Example·advanced/opencv_movie
 192 ····*·Example·advanced/custom_events
193 [Logo]193 [Logo]
194 ******·Brian_2·******194 ******·Brian_2·******
195 ****·Navigation·****195 ****·Navigation·****
196 ····*·Introduction196 ····*·Introduction
197 ····*·User’s_guide197 ····*·User’s_guide
198 ····*·Advanced_guide198 ····*·Advanced_guide
199 ····*·Examples199 ····*·Examples
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213 <dd></dd></dl>213 <dd></dd></dl>
  
214 </dd></dl>214 </dd></dl>
  
215 <div·class="section"·id="tutorials-and-examples-using-this">215 <div·class="section"·id="tutorials-and-examples-using-this">
216 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>216 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>
217 <ul·class="simple">217 <ul·class="simple">
 218 <li><p>Tutorial·<span·class="xref·std·std-doc">3-intro-to-brian-simulations</span></p></li>
218 <li><p>Tutorial·<span·class="xref·std·std-doc">1-intro-to-brian-neurons</span></p></li>219 <li><p>Tutorial·<span·class="xref·std·std-doc">1-intro-to-brian-neurons</span></p></li>
219 <li><p>Tutorial·<span·class="xref·std·std-doc">2-intro-to-brian-synapses</span></p></li>220 <li><p>Tutorial·<span·class="xref·std·std-doc">2-intro-to-brian-synapses</span></p></li>
220 <li><p>Tutorial·<span·class="xref·std·std-doc">3-intro-to-brian-simulations</span></p></li> 
221 <li><p>Example·<a·class="reference·internal"·href="../examples/adaptive_threshold.html"><span·class="doc">adaptive_threshold</span></a></p></li> 
222 <li><p>Example·<a·class="reference·internal"·href="../examples/phase_locking.html"><span·class="doc">phase_locking</span></a></p></li> 
223 <li><p>Example·<a·class="reference·internal"·href="../examples/COBAHH.html"><span·class="doc">COBAHH</span></a></p></li>221 <li><p>Example·<a·class="reference·internal"·href="../examples/COBAHH.html"><span·class="doc">COBAHH</span></a></p></li>
 222 <li><p>Example·<a·class="reference·internal"·href="../examples/phase_locking.html"><span·class="doc">phase_locking</span></a></p></li>
224 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.custom_events.html"><span·class="doc">advanced/custom_events</span></a></p></li>223 <li><p>Example·<a·class="reference·internal"·href="../examples/adaptive_threshold.html"><span·class="doc">adaptive_threshold</span></a></p></li>
 224 <li><p>Example·<a·class="reference·internal"·href="../examples/standalone.STDP_standalone.html"><span·class="doc">standalone/STDP_standalone</span></a></p></li>
225 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.stochastic_odes.html"><span·class="doc">advanced/stochastic_odes</span></a></p></li>225 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.synapses.html"><span·class="doc">synapses/synapses</span></a></p></li>
226 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.compare_GSL_to_conventional.html"><span·class="doc">advanced/compare_GSL_to_conventional</span></a></p></li>226 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.jeffress.html"><span·class="doc">synapses/jeffress</span></a></p></li>
227 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Wang_Buszaki_1996.html"><span·class="doc">frompapers/Wang_Buszaki_1996</span></a></p></li>227 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.gapjunctions.html"><span·class="doc">synapses/gapjunctions</span></a></p></li>
228 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Rossant_et_al_2011bis.html"><span·class="doc">frompapers/Rossant_et_al_2011bis</span></a></p></li> 
229 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Destexhe_et_al_1998.html"><span·class="doc">frompapers/Destexhe_et_al_1998</span></a></p></li>228 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.STDP.html"><span·class="doc">synapses/STDP</span></a></p></li>
230 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Hindmarsh_Rose_1984.html"><span·class="doc">frompapers/Hindmarsh_Rose_1984</span></a></p></li>229 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.nonlinear.html"><span·class="doc">synapses/nonlinear</span></a></p></li>
231 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_Gerstner_2005.html"><span·class="doc">frompapers/Brette_Gerstner_2005</span></a></p></li> 
232 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Platkiewicz_Brette_2011.html"><span·class="doc">frompapers/Platkiewicz_Brette_2011</span></a></p></li> 
233 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Rothman_Manis_2003.html"><span·class="doc">frompapers/Rothman_Manis_2003</span></a></p></li>230 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Rothman_Manis_2003.html"><span·class="doc">frompapers/Rothman_Manis_2003</span></a></p></li>
 231 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Destexhe_et_al_1998.html"><span·class="doc">frompapers/Destexhe_et_al_1998</span></a></p></li>
 232 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Rossant_et_al_2011bis.html"><span·class="doc">frompapers/Rossant_et_al_2011bis</span></a></p></li>
234 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Morris_Lecar_1981.html"><span·class="doc">frompapers/Morris_Lecar_1981</span></a></p></li>233 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Morris_Lecar_1981.html"><span·class="doc">frompapers/Morris_Lecar_1981</span></a></p></li>
235 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_Guigon_2003.html"><span·class="doc">frompapers/Brette_Guigon_2003</span></a></p></li>234 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_Gerstner_2005.html"><span·class="doc">frompapers/Brette_Gerstner_2005</span></a></p></li>
236 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Izhikevich_2007.html"><span·class="doc">frompapers/Izhikevich_2007</span></a></p></li>235 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Wang_Buszaki_1996.html"><span·class="doc">frompapers/Wang_Buszaki_1996</span></a></p></li>
237 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Clopath_et_al_2010_homeostasis.html"><span·class="doc">frompapers/Clopath_et_al_2010_homeostasis</span></a></p></li>236 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Clopath_et_al_2010_homeostasis.html"><span·class="doc">frompapers/Clopath_et_al_2010_homeostasis</span></a></p></li>
238 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Touboul_Brette_2008.html"><span·class="doc">frompapers/Touboul_Brette_2008</span></a></p></li>237 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Touboul_Brette_2008.html"><span·class="doc">frompapers/Touboul_Brette_2008</span></a></p></li>
239 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_2_gchi_astrocyte.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte</span></a></p></li> 
240 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_1_COBA.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_1_COBA</span></a></p></li> 
241 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_5_astro_ring.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_5_astro_ring</span></a></p></li> 
242 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_4_synrel.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_4_synrel</span></a></p></li> 
243 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_4_rsmean.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_4_rsmean</span></a></p></li> 
244 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_3_io_synapse.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_3_io_synapse</span></a></p></li> 
245 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig3CF.html"><span·class="doc">frompapers/Brette_2012/Fig3CF</span></a></p></li>238 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_Guigon_2003.html"><span·class="doc">frompapers/Brette_Guigon_2003</span></a></p></li>
 239 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Hindmarsh_Rose_1984.html"><span·class="doc">frompapers/Hindmarsh_Rose_1984</span></a></p></li>
 240 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Izhikevich_2007.html"><span·class="doc">frompapers/Izhikevich_2007</span></a></p></li>
 241 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Platkiewicz_Brette_2011.html"><span·class="doc">frompapers/Platkiewicz_Brette_2011</span></a></p></li>
246 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig5A.html"><span·class="doc">frompapers/Brette_2012/Fig5A</span></a></p></li>242 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig5A.html"><span·class="doc">frompapers/Brette_2012/Fig5A</span></a></p></li>
247 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig4.html"><span·class="doc">frompapers/Brette_2012/Fig4</span></a></p></li> 
248 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig3AB.html"><span·class="doc">frompapers/Brette_2012/Fig3AB</span></a></p></li> 
249 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig1.html"><span·class="doc">frompapers/Brette_2012/Fig1</span></a></p></li>243 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig1.html"><span·class="doc">frompapers/Brette_2012/Fig1</span></a></p></li>
250 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.nonlinear.html"><span·class="doc">synapses/nonlinear</span></a></p></li> 
251 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.gapjunctions.html"><span·class="doc">synapses/gapjunctions</span></a></p></li> 
252 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.synapses.html"><span·class="doc">synapses/synapses</span></a></p></li> 
253 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.STDP.html"><span·class="doc">synapses/STDP</span></a></p></li>244 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig3AB.html"><span·class="doc">frompapers/Brette_2012/Fig3AB</span></a></p></li>
254 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.jeffress.html"><span·class="doc">synapses/jeffress</span></a></p></li>245 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig4.html"><span·class="doc">frompapers/Brette_2012/Fig4</span></a></p></li>
255 <li><p>Example·<a·class="reference·internal"·href="../examples/standalone.STDP_standalone.html"><span·class="doc">standalone/STDP_standalone</span></a></p></li>246 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig3CF.html"><span·class="doc">frompapers/Brette_2012/Fig3CF</span></a></p></li>
 247 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_4_rsmean.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_4_rsmean</span></a></p></li>
 248 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_3_io_synapse.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_3_io_synapse</span></a></p></li>
 249 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_4_synrel.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_4_synrel</span></a></p></li>
 250 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_1_COBA.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_1_COBA</span></a></p></li>
 251 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_5_astro_ring.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_5_astro_ring</span></a></p></li>
 252 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_2_gchi_astrocyte.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte</span></a></p></li>
256 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.lfp.html"><span·class="doc">compartmental/lfp</span></a></p></li>253 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.lfp.html"><span·class="doc">compartmental/lfp</span></a></p></li>
257 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.hodgkin_huxley_1952.html"><span·class="doc">compartmental/hodgkin_huxley_1952</span></a></p></li> 
258 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_with_inputs2.html"><span·class="doc">compartmental/bipolar_with_inputs2</span></a></p></li> 
259 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_with_inputs.html"><span·class="doc">compartmental/bipolar_with_inputs</span></a></p></li> 
260 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.spike_initiation.html"><span·class="doc">compartmental/spike_initiation</span></a></p></li> 
261 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.infinite_cable.html"><span·class="doc">compartmental/infinite_cable</span></a></p></li>254 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.infinite_cable.html"><span·class="doc">compartmental/infinite_cable</span></a></p></li>
262 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.hh_with_spikes.html"><span·class="doc">compartmental/hh_with_spikes</span></a></p></li>255 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.hh_with_spikes.html"><span·class="doc">compartmental/hh_with_spikes</span></a></p></li>
 256 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.hodgkin_huxley_1952.html"><span·class="doc">compartmental/hodgkin_huxley_1952</span></a></p></li>
 257 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.spike_initiation.html"><span·class="doc">compartmental/spike_initiation</span></a></p></li>
 258 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_with_inputs2.html"><span·class="doc">compartmental/bipolar_with_inputs2</span></a></p></li>
263 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_cell.html"><span·class="doc">compartmental/bipolar_cell</span></a></p></li>259 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_cell.html"><span·class="doc">compartmental/bipolar_cell</span></a></p></li>
 260 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_with_inputs.html"><span·class="doc">compartmental/bipolar_with_inputs</span></a></p></li>
 261 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.stochastic_odes.html"><span·class="doc">advanced/stochastic_odes</span></a></p></li>
 262 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.compare_GSL_to_conventional.html"><span·class="doc">advanced/compare_GSL_to_conventional</span></a></p></li>
 263 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.custom_events.html"><span·class="doc">advanced/custom_events</span></a></p></li>
264 </ul>264 </ul>
265 </div>265 </div>
266 </div>266 </div>
  
  
267 ··········</div>267 ··········</div>
268 ········</div>268 ········</div>
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116 ············>>>·print(mon.t[:])116 ············>>>·print(mon.t[:])
117 ············[···0.··100.··200.··300.··400.··500.]·us117 ············[···0.··100.··200.··300.··400.··500.]·us
118 ············>>>·print(np.array_str(mon.v[:],·precision=3))118 ············>>>·print(np.array_str(mon.v[:],·precision=3))
119 ············[[·1.·····0.98···0.961··0.942··0.923··0.905]]119 ············[[·1.·····0.98···0.961··0.942··0.923··0.905]]
120 ········reinit()[source]¶120 ········reinit()[source]¶
121 ········resize(new_size)[source]¶121 ········resize(new_size)[source]¶
122 *****·Tutorials·and·examples·using·this¶·*****122 *****·Tutorials·and·examples·using·this¶·*****
 123 ····*·Tutorial·3-intro-to-brian-simulations
123 ····*·Tutorial·1-intro-to-brian-neurons124 ····*·Tutorial·1-intro-to-brian-neurons
124 ····*·Tutorial·2-intro-to-brian-synapses125 ····*·Tutorial·2-intro-to-brian-synapses
125 ····*·Tutorial·3-intro-to-brian-simulations 
126 ····*·Example·adaptive_threshold 
127 ····*·Example·phase_locking 
128 ····*·Example·COBAHH126 ····*·Example·COBAHH
 127 ····*·Example·phase_locking
 128 ····*·Example·adaptive_threshold
 129 ····*·Example·standalone/STDP_standalone
 130 ····*·Example·synapses/synapses
 131 ····*·Example·synapses/jeffress
 132 ····*·Example·synapses/gapjunctions
 133 ····*·Example·synapses/STDP
 134 ····*·Example·synapses/nonlinear
129 ····*·Example·advanced/custom_events 
130 ····*·Example·advanced/stochastic_odes 
131 ····*·Example·advanced/compare_GSL_to_conventional 
132 ····*·Example·frompapers/Wang_Buszaki_1996 
133 ····*·Example·frompapers/Rossant_et_al_2011bis 
134 ····*·Example·frompapers/Destexhe_et_al_1998 
135 ····*·Example·frompapers/Hindmarsh_Rose_1984 
136 ····*·Example·frompapers/Brette_Gerstner_2005 
137 ····*·Example·frompapers/Platkiewicz_Brette_2011 
138 ····*·Example·frompapers/Rothman_Manis_2003135 ····*·Example·frompapers/Rothman_Manis_2003
 136 ····*·Example·frompapers/Destexhe_et_al_1998
 137 ····*·Example·frompapers/Rossant_et_al_2011bis
139 ····*·Example·frompapers/Morris_Lecar_1981138 ····*·Example·frompapers/Morris_Lecar_1981
140 ····*·Example·frompapers/Brette_Guigon_2003139 ····*·Example·frompapers/Brette_Gerstner_2005
141 ····*·Example·frompapers/Izhikevich_2007140 ····*·Example·frompapers/Wang_Buszaki_1996
142 ····*·Example·frompapers/Clopath_et_al_2010_homeostasis141 ····*·Example·frompapers/Clopath_et_al_2010_homeostasis
143 ····*·Example·frompapers/Touboul_Brette_2008142 ····*·Example·frompapers/Touboul_Brette_2008
144 ····*·Example·frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte 
145 ····*·Example·frompapers/Stimberg_et_al_2018/example_1_COBA 
146 ····*·Example·frompapers/Stimberg_et_al_2018/example_5_astro_ring 
147 ····*·Example·frompapers/Stimberg_et_al_2018/example_4_synrel 
148 ····*·Example·frompapers/Stimberg_et_al_2018/example_4_rsmean 
149 ····*·Example·frompapers/Stimberg_et_al_2018/example_3_io_synapse 
150 ····*·Example·frompapers/Brette_2012/Fig3CF143 ····*·Example·frompapers/Brette_Guigon_2003
 144 ····*·Example·frompapers/Hindmarsh_Rose_1984
 145 ····*·Example·frompapers/Izhikevich_2007
 146 ····*·Example·frompapers/Platkiewicz_Brette_2011
151 ····*·Example·frompapers/Brette_2012/Fig5A147 ····*·Example·frompapers/Brette_2012/Fig5A
152 ····*·Example·frompapers/Brette_2012/Fig4 
153 ····*·Example·frompapers/Brette_2012/Fig3AB 
154 ····*·Example·frompapers/Brette_2012/Fig1148 ····*·Example·frompapers/Brette_2012/Fig1
155 ····*·Example·synapses/nonlinear 
156 ····*·Example·synapses/gapjunctions 
157 ····*·Example·synapses/synapses 
158 ····*·Example·synapses/STDP 
159 ····*·Example·synapses/jeffress 
160 ····*·Example·standalone/STDP_standalone149 ····*·Example·frompapers/Brette_2012/Fig3AB
 150 ····*·Example·frompapers/Brette_2012/Fig4
 151 ····*·Example·frompapers/Brette_2012/Fig3CF
 152 ····*·Example·frompapers/Stimberg_et_al_2018/example_4_rsmean
 153 ····*·Example·frompapers/Stimberg_et_al_2018/example_3_io_synapse
 154 ····*·Example·frompapers/Stimberg_et_al_2018/example_4_synrel
 155 ····*·Example·frompapers/Stimberg_et_al_2018/example_1_COBA
 156 ····*·Example·frompapers/Stimberg_et_al_2018/example_5_astro_ring
 157 ····*·Example·frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte
161 ····*·Example·compartmental/lfp158 ····*·Example·compartmental/lfp
162 ····*·Example·compartmental/hodgkin_huxley_1952 
163 ····*·Example·compartmental/bipolar_with_inputs2 
164 ····*·Example·compartmental/bipolar_with_inputs 
165 ····*·Example·compartmental/spike_initiation 
166 ····*·Example·compartmental/infinite_cable159 ····*·Example·compartmental/infinite_cable
167 ····*·Example·compartmental/hh_with_spikes160 ····*·Example·compartmental/hh_with_spikes
 161 ····*·Example·compartmental/hodgkin_huxley_1952
 162 ····*·Example·compartmental/spike_initiation
 163 ····*·Example·compartmental/bipolar_with_inputs2
168 ····*·Example·compartmental/bipolar_cell164 ····*·Example·compartmental/bipolar_cell
 165 ····*·Example·compartmental/bipolar_with_inputs
 166 ····*·Example·advanced/stochastic_odes
 167 ····*·Example·advanced/compare_GSL_to_conventional
 168 ····*·Example·advanced/custom_events
169 [Logo]169 [Logo]
170 ******·Brian_2·******170 ******·Brian_2·******
171 ****·Navigation·****171 ****·Navigation·****
172 ····*·Introduction172 ····*·Introduction
173 ····*·User’s_guide173 ····*·User’s_guide
174 ····*·Advanced_guide174 ····*·Advanced_guide
175 ····*·Examples175 ····*·Examples
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195 </dd></dl>195 </dd></dl>
  
196 <div·class="section"·id="tutorials-and-examples-using-this">196 <div·class="section"·id="tutorials-and-examples-using-this">
197 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>197 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>
198 <ul·class="simple">198 <ul·class="simple">
199 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Destexhe_et_al_1998.html"><span·class="doc">frompapers/Destexhe_et_al_1998</span></a></p></li>199 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Destexhe_et_al_1998.html"><span·class="doc">frompapers/Destexhe_et_al_1998</span></a></p></li>
200 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig3CF.html"><span·class="doc">frompapers/Brette_2012/Fig3CF</span></a></p></li> 
201 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig5A.html"><span·class="doc">frompapers/Brette_2012/Fig5A</span></a></p></li>200 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig5A.html"><span·class="doc">frompapers/Brette_2012/Fig5A</span></a></p></li>
202 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig3AB.html"><span·class="doc">frompapers/Brette_2012/Fig3AB</span></a></p></li> 
203 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig1.html"><span·class="doc">frompapers/Brette_2012/Fig1</span></a></p></li>201 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig1.html"><span·class="doc">frompapers/Brette_2012/Fig1</span></a></p></li>
204 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.lfp.html"><span·class="doc">compartmental/lfp</span></a></p></li>202 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig3AB.html"><span·class="doc">frompapers/Brette_2012/Fig3AB</span></a></p></li>
 203 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig3CF.html"><span·class="doc">frompapers/Brette_2012/Fig3CF</span></a></p></li>
205 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.hodgkin_huxley_1952.html"><span·class="doc">compartmental/hodgkin_huxley_1952</span></a></p></li> 
206 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_with_inputs2.html"><span·class="doc">compartmental/bipolar_with_inputs2</span></a></p></li> 
207 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_with_inputs.html"><span·class="doc">compartmental/bipolar_with_inputs</span></a></p></li> 
208 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.rall.html"><span·class="doc">compartmental/rall</span></a></p></li>204 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.rall.html"><span·class="doc">compartmental/rall</span></a></p></li>
209 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.spike_initiation.html"><span·class="doc">compartmental/spike_initiation</span></a></p></li>205 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.lfp.html"><span·class="doc">compartmental/lfp</span></a></p></li>
210 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.infinite_cable.html"><span·class="doc">compartmental/infinite_cable</span></a></p></li>206 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.infinite_cable.html"><span·class="doc">compartmental/infinite_cable</span></a></p></li>
211 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.morphotest.html"><span·class="doc">compartmental/morphotest</span></a></p></li> 
212 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.cylinder.html"><span·class="doc">compartmental/cylinder</span></a></p></li>207 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.cylinder.html"><span·class="doc">compartmental/cylinder</span></a></p></li>
213 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.hh_with_spikes.html"><span·class="doc">compartmental/hh_with_spikes</span></a></p></li>208 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.hh_with_spikes.html"><span·class="doc">compartmental/hh_with_spikes</span></a></p></li>
 209 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.hodgkin_huxley_1952.html"><span·class="doc">compartmental/hodgkin_huxley_1952</span></a></p></li>
 210 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.spike_initiation.html"><span·class="doc">compartmental/spike_initiation</span></a></p></li>
 211 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_with_inputs2.html"><span·class="doc">compartmental/bipolar_with_inputs2</span></a></p></li>
 212 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.morphotest.html"><span·class="doc">compartmental/morphotest</span></a></p></li>
214 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_cell.html"><span·class="doc">compartmental/bipolar_cell</span></a></p></li>213 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_cell.html"><span·class="doc">compartmental/bipolar_cell</span></a></p></li>
 214 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_with_inputs.html"><span·class="doc">compartmental/bipolar_with_inputs</span></a></p></li>
215 </ul>215 </ul>
216 </div>216 </div>
217 </div>217 </div>
  
  
218 ··········</div>218 ··········</div>
219 ········</div>219 ········</div>
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87 ············only,·not·re-creating·the·parent/children·relation)87 ············only,·not·re-creating·the·parent/children·relation)
88 ··············Returns88 ··············Returns
89 ··················copy·:·Morphology89 ··················copy·:·Morphology
90 ·······················A·copy·of·this·section·(without·the·links·to·the90 ·······················A·copy·of·this·section·(without·the·links·to·the
91 ·······················parent/children)91 ·······················parent/children)
92 *****·Tutorials·and·examples·using·this¶·*****92 *****·Tutorials·and·examples·using·this¶·*****
93 ····*·Example·frompapers/Destexhe_et_al_199893 ····*·Example·frompapers/Destexhe_et_al_1998
94 ····*·Example·frompapers/Brette_2012/Fig3CF 
95 ····*·Example·frompapers/Brette_2012/Fig5A94 ····*·Example·frompapers/Brette_2012/Fig5A
96 ····*·Example·frompapers/Brette_2012/Fig3AB 
97 ····*·Example·frompapers/Brette_2012/Fig195 ····*·Example·frompapers/Brette_2012/Fig1
 96 ····*·Example·frompapers/Brette_2012/Fig3AB
 97 ····*·Example·frompapers/Brette_2012/Fig3CF
98 ····*·Example·compartmental/lfp 
99 ····*·Example·compartmental/hodgkin_huxley_1952 
100 ····*·Example·compartmental/bipolar_with_inputs2 
101 ····*·Example·compartmental/bipolar_with_inputs 
102 ····*·Example·compartmental/rall98 ····*·Example·compartmental/rall
103 ····*·Example·compartmental/spike_initiation99 ····*·Example·compartmental/lfp
104 ····*·Example·compartmental/infinite_cable100 ····*·Example·compartmental/infinite_cable
105 ····*·Example·compartmental/morphotest 
106 ····*·Example·compartmental/cylinder101 ····*·Example·compartmental/cylinder
107 ····*·Example·compartmental/hh_with_spikes102 ····*·Example·compartmental/hh_with_spikes
 103 ····*·Example·compartmental/hodgkin_huxley_1952
 104 ····*·Example·compartmental/spike_initiation
 105 ····*·Example·compartmental/bipolar_with_inputs2
 106 ····*·Example·compartmental/morphotest
108 ····*·Example·compartmental/bipolar_cell107 ····*·Example·compartmental/bipolar_cell
 108 ····*·Example·compartmental/bipolar_with_inputs
109 [Logo]109 [Logo]
110 ******·Brian_2·******110 ******·Brian_2·******
111 ****·Navigation·****111 ****·Navigation·****
112 ····*·Introduction112 ····*·Introduction
113 ····*·User’s_guide113 ····*·User’s_guide
114 ····*·Advanced_guide114 ····*·Advanced_guide
115 ····*·Examples115 ····*·Examples
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599 </dd></dl>599 </dd></dl>
  
600 </dd></dl>600 </dd></dl>
  
601 <div·class="section"·id="tutorials-and-examples-using-this">601 <div·class="section"·id="tutorials-and-examples-using-this">
602 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>602 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>
603 <ul·class="simple">603 <ul·class="simple">
604 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig3CF.html"><span·class="doc">frompapers/Brette_2012/Fig3CF</span></a></p></li> 
605 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig5A.html"><span·class="doc">frompapers/Brette_2012/Fig5A</span></a></p></li>604 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig5A.html"><span·class="doc">frompapers/Brette_2012/Fig5A</span></a></p></li>
606 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig4.html"><span·class="doc">frompapers/Brette_2012/Fig4</span></a></p></li> 
607 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig3AB.html"><span·class="doc">frompapers/Brette_2012/Fig3AB</span></a></p></li> 
608 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig1.html"><span·class="doc">frompapers/Brette_2012/Fig1</span></a></p></li>605 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig1.html"><span·class="doc">frompapers/Brette_2012/Fig1</span></a></p></li>
609 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_with_inputs2.html"><span·class="doc">compartmental/bipolar_with_inputs2</span></a></p></li>606 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig3AB.html"><span·class="doc">frompapers/Brette_2012/Fig3AB</span></a></p></li>
610 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_with_inputs.html"><span·class="doc">compartmental/bipolar_with_inputs</span></a></p></li>607 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig4.html"><span·class="doc">frompapers/Brette_2012/Fig4</span></a></p></li>
 608 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig3CF.html"><span·class="doc">frompapers/Brette_2012/Fig3CF</span></a></p></li>
611 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.rall.html"><span·class="doc">compartmental/rall</span></a></p></li>609 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.rall.html"><span·class="doc">compartmental/rall</span></a></p></li>
612 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.spike_initiation.html"><span·class="doc">compartmental/spike_initiation</span></a></p></li> 
613 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.infinite_cable.html"><span·class="doc">compartmental/infinite_cable</span></a></p></li>610 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.infinite_cable.html"><span·class="doc">compartmental/infinite_cable</span></a></p></li>
614 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.morphotest.html"><span·class="doc">compartmental/morphotest</span></a></p></li> 
615 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.cylinder.html"><span·class="doc">compartmental/cylinder</span></a></p></li>611 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.cylinder.html"><span·class="doc">compartmental/cylinder</span></a></p></li>
 612 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.spike_initiation.html"><span·class="doc">compartmental/spike_initiation</span></a></p></li>
 613 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_with_inputs2.html"><span·class="doc">compartmental/bipolar_with_inputs2</span></a></p></li>
 614 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.morphotest.html"><span·class="doc">compartmental/morphotest</span></a></p></li>
616 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_cell.html"><span·class="doc">compartmental/bipolar_cell</span></a></p></li>615 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_cell.html"><span·class="doc">compartmental/bipolar_cell</span></a></p></li>
 616 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_with_inputs.html"><span·class="doc">compartmental/bipolar_with_inputs</span></a></p></li>
617 </ul>617 </ul>
618 </div>618 </div>
619 </div>619 </div>
  
  
620 ··········</div>620 ··········</div>
621 ········</div>621 ········</div>
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314 ············Return·a·representation·of·the·topology314 ············Return·a·representation·of·the·topology
315 ··············Returns315 ··············Returns
316 ··················topology·:·Topology316 ··················topology·:·Topology
317 ·······················An·object·representing·the·topology·(can·be317 ·······················An·object·representing·the·topology·(can·be
318 ·······················converted·to·a·string·by·using·str(...)·or·simply318 ·······················converted·to·a·string·by·using·str(...)·or·simply
319 ·······················by·printing·it·with·print.)319 ·······················by·printing·it·with·print.)
320 *****·Tutorials·and·examples·using·this¶·*****320 *****·Tutorials·and·examples·using·this¶·*****
321 ····*·Example·frompapers/Brette_2012/Fig3CF 
322 ····*·Example·frompapers/Brette_2012/Fig5A321 ····*·Example·frompapers/Brette_2012/Fig5A
323 ····*·Example·frompapers/Brette_2012/Fig4 
324 ····*·Example·frompapers/Brette_2012/Fig3AB 
325 ····*·Example·frompapers/Brette_2012/Fig1322 ····*·Example·frompapers/Brette_2012/Fig1
326 ····*·Example·compartmental/bipolar_with_inputs2 
327 ····*·Example·compartmental/bipolar_with_inputs323 ····*·Example·frompapers/Brette_2012/Fig3AB
 324 ····*·Example·frompapers/Brette_2012/Fig4
 325 ····*·Example·frompapers/Brette_2012/Fig3CF
328 ····*·Example·compartmental/rall326 ····*·Example·compartmental/rall
329 ····*·Example·compartmental/spike_initiation 
330 ····*·Example·compartmental/infinite_cable327 ····*·Example·compartmental/infinite_cable
331 ····*·Example·compartmental/morphotest 
332 ····*·Example·compartmental/cylinder328 ····*·Example·compartmental/cylinder
 329 ····*·Example·compartmental/spike_initiation
 330 ····*·Example·compartmental/bipolar_with_inputs2
 331 ····*·Example·compartmental/morphotest
333 ····*·Example·compartmental/bipolar_cell332 ····*·Example·compartmental/bipolar_cell
 333 ····*·Example·compartmental/bipolar_with_inputs
334 [Logo]334 [Logo]
335 ******·Brian_2·******335 ******·Brian_2·******
336 ****·Navigation·****336 ****·Navigation·****
337 ····*·Introduction337 ····*·Introduction
338 ····*·User’s_guide338 ····*·User’s_guide
339 ····*·Advanced_guide339 ····*·Advanced_guide
340 ····*·Examples340 ····*·Examples
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292 </dd></dl>292 </dd></dl>
  
293 </dd></dl>293 </dd></dl>
  
294 <div·class="section"·id="tutorials-and-examples-using-this">294 <div·class="section"·id="tutorials-and-examples-using-this">
295 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>295 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>
296 <ul·class="simple">296 <ul·class="simple">
297 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig3CF.html"><span·class="doc">frompapers/Brette_2012/Fig3CF</span></a></p></li> 
298 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig5A.html"><span·class="doc">frompapers/Brette_2012/Fig5A</span></a></p></li>297 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig5A.html"><span·class="doc">frompapers/Brette_2012/Fig5A</span></a></p></li>
299 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig4.html"><span·class="doc">frompapers/Brette_2012/Fig4</span></a></p></li> 
300 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig3AB.html"><span·class="doc">frompapers/Brette_2012/Fig3AB</span></a></p></li> 
301 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig1.html"><span·class="doc">frompapers/Brette_2012/Fig1</span></a></p></li>298 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig1.html"><span·class="doc">frompapers/Brette_2012/Fig1</span></a></p></li>
302 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_with_inputs2.html"><span·class="doc">compartmental/bipolar_with_inputs2</span></a></p></li>299 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig3AB.html"><span·class="doc">frompapers/Brette_2012/Fig3AB</span></a></p></li>
303 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_with_inputs.html"><span·class="doc">compartmental/bipolar_with_inputs</span></a></p></li>300 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig4.html"><span·class="doc">frompapers/Brette_2012/Fig4</span></a></p></li>
 301 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig3CF.html"><span·class="doc">frompapers/Brette_2012/Fig3CF</span></a></p></li>
304 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.spike_initiation.html"><span·class="doc">compartmental/spike_initiation</span></a></p></li>302 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.spike_initiation.html"><span·class="doc">compartmental/spike_initiation</span></a></p></li>
 303 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_with_inputs2.html"><span·class="doc">compartmental/bipolar_with_inputs2</span></a></p></li>
305 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.morphotest.html"><span·class="doc">compartmental/morphotest</span></a></p></li>304 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.morphotest.html"><span·class="doc">compartmental/morphotest</span></a></p></li>
306 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_cell.html"><span·class="doc">compartmental/bipolar_cell</span></a></p></li>305 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_cell.html"><span·class="doc">compartmental/bipolar_cell</span></a></p></li>
 306 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_with_inputs.html"><span·class="doc">compartmental/bipolar_with_inputs</span></a></p></li>
307 </ul>307 </ul>
308 </div>308 </div>
309 </div>309 </div>
  
  
310 ··········</div>310 ··········</div>
311 ········</div>311 ········</div>
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137 ············Create·a·copy·of·the·current·section·(attributes·of·this·section137 ············Create·a·copy·of·the·current·section·(attributes·of·this·section
138 ············only,·not·re-creating·the·parent/children·relation)138 ············only,·not·re-creating·the·parent/children·relation)
139 ··············Returns139 ··············Returns
140 ··················copy·:·Morphology140 ··················copy·:·Morphology
141 ·······················A·copy·of·this·section·(without·the·links·to·the141 ·······················A·copy·of·this·section·(without·the·links·to·the
142 ·······················parent/children)142 ·······················parent/children)
143 *****·Tutorials·and·examples·using·this¶·*****143 *****·Tutorials·and·examples·using·this¶·*****
144 ····*·Example·frompapers/Brette_2012/Fig3CF 
145 ····*·Example·frompapers/Brette_2012/Fig5A144 ····*·Example·frompapers/Brette_2012/Fig5A
146 ····*·Example·frompapers/Brette_2012/Fig4 
147 ····*·Example·frompapers/Brette_2012/Fig3AB 
148 ····*·Example·frompapers/Brette_2012/Fig1145 ····*·Example·frompapers/Brette_2012/Fig1
149 ····*·Example·compartmental/bipolar_with_inputs2 
150 ····*·Example·compartmental/bipolar_with_inputs146 ····*·Example·frompapers/Brette_2012/Fig3AB
 147 ····*·Example·frompapers/Brette_2012/Fig4
 148 ····*·Example·frompapers/Brette_2012/Fig3CF
151 ····*·Example·compartmental/spike_initiation149 ····*·Example·compartmental/spike_initiation
 150 ····*·Example·compartmental/bipolar_with_inputs2
152 ····*·Example·compartmental/morphotest151 ····*·Example·compartmental/morphotest
153 ····*·Example·compartmental/bipolar_cell152 ····*·Example·compartmental/bipolar_cell
 153 ····*·Example·compartmental/bipolar_with_inputs
154 [Logo]154 [Logo]
155 ******·Brian_2·******155 ******·Brian_2·******
156 ****·Navigation·****156 ****·Navigation·****
157 ····*·Introduction157 ····*·Introduction
158 ····*·User’s_guide158 ····*·User’s_guide
159 ····*·Advanced_guide159 ····*·Advanced_guide
160 ····*·Examples160 ····*·Examples
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186 </dd></dl>186 </dd></dl>
  
187 <div·class="section"·id="tutorials-and-examples-using-this">187 <div·class="section"·id="tutorials-and-examples-using-this">
188 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>188 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>
189 <ul·class="simple">189 <ul·class="simple">
190 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Destexhe_et_al_1998.html"><span·class="doc">frompapers/Destexhe_et_al_1998</span></a></p></li>190 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Destexhe_et_al_1998.html"><span·class="doc">frompapers/Destexhe_et_al_1998</span></a></p></li>
191 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig3CF.html"><span·class="doc">frompapers/Brette_2012/Fig3CF</span></a></p></li> 
192 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig5A.html"><span·class="doc">frompapers/Brette_2012/Fig5A</span></a></p></li>191 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig5A.html"><span·class="doc">frompapers/Brette_2012/Fig5A</span></a></p></li>
193 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig4.html"><span·class="doc">frompapers/Brette_2012/Fig4</span></a></p></li> 
194 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig3AB.html"><span·class="doc">frompapers/Brette_2012/Fig3AB</span></a></p></li> 
195 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig1.html"><span·class="doc">frompapers/Brette_2012/Fig1</span></a></p></li>192 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig1.html"><span·class="doc">frompapers/Brette_2012/Fig1</span></a></p></li>
 193 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig3AB.html"><span·class="doc">frompapers/Brette_2012/Fig3AB</span></a></p></li>
196 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.lfp.html"><span·class="doc">compartmental/lfp</span></a></p></li>194 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig4.html"><span·class="doc">frompapers/Brette_2012/Fig4</span></a></p></li>
 195 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig3CF.html"><span·class="doc">frompapers/Brette_2012/Fig3CF</span></a></p></li>
197 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.hodgkin_huxley_1952.html"><span·class="doc">compartmental/hodgkin_huxley_1952</span></a></p></li> 
198 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_with_inputs2.html"><span·class="doc">compartmental/bipolar_with_inputs2</span></a></p></li> 
199 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_with_inputs.html"><span·class="doc">compartmental/bipolar_with_inputs</span></a></p></li> 
200 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.rall.html"><span·class="doc">compartmental/rall</span></a></p></li>196 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.rall.html"><span·class="doc">compartmental/rall</span></a></p></li>
201 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.spike_initiation.html"><span·class="doc">compartmental/spike_initiation</span></a></p></li>197 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.lfp.html"><span·class="doc">compartmental/lfp</span></a></p></li>
202 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.infinite_cable.html"><span·class="doc">compartmental/infinite_cable</span></a></p></li>198 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.infinite_cable.html"><span·class="doc">compartmental/infinite_cable</span></a></p></li>
203 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.morphotest.html"><span·class="doc">compartmental/morphotest</span></a></p></li> 
204 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.cylinder.html"><span·class="doc">compartmental/cylinder</span></a></p></li>199 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.cylinder.html"><span·class="doc">compartmental/cylinder</span></a></p></li>
205 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.hh_with_spikes.html"><span·class="doc">compartmental/hh_with_spikes</span></a></p></li>200 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.hh_with_spikes.html"><span·class="doc">compartmental/hh_with_spikes</span></a></p></li>
 201 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.hodgkin_huxley_1952.html"><span·class="doc">compartmental/hodgkin_huxley_1952</span></a></p></li>
 202 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.spike_initiation.html"><span·class="doc">compartmental/spike_initiation</span></a></p></li>
 203 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_with_inputs2.html"><span·class="doc">compartmental/bipolar_with_inputs2</span></a></p></li>
 204 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.morphotest.html"><span·class="doc">compartmental/morphotest</span></a></p></li>
206 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_cell.html"><span·class="doc">compartmental/bipolar_cell</span></a></p></li>205 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_cell.html"><span·class="doc">compartmental/bipolar_cell</span></a></p></li>
 206 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_with_inputs.html"><span·class="doc">compartmental/bipolar_with_inputs</span></a></p></li>
207 </ul>207 </ul>
208 </div>208 </div>
209 </div>209 </div>
  
  
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211 ········</div>211 ········</div>
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102 ············SpatialSubgroup.·If·it·does·not·exist,·returns·the·Group·attribute.102 ············SpatialSubgroup.·If·it·does·not·exist,·returns·the·Group·attribute.
103 ········staticspatialneuron_segment(neuron,·item)[source]¶103 ········staticspatialneuron_segment(neuron,·item)[source]¶
104 ············Selects·a·segment·from·SpatialNeuron·neuron,·where·item·is·a·slice104 ············Selects·a·segment·from·SpatialNeuron·neuron,·where·item·is·a·slice
105 ············of·either·compartment·indexes·or·distances.·Note·a:·segment·is·not105 ············of·either·compartment·indexes·or·distances.·Note·a:·segment·is·not
106 ············a·SpatialNeuron,·only·a·Group.106 ············a·SpatialNeuron,·only·a·Group.
107 *****·Tutorials·and·examples·using·this¶·*****107 *****·Tutorials·and·examples·using·this¶·*****
108 ····*·Example·frompapers/Destexhe_et_al_1998108 ····*·Example·frompapers/Destexhe_et_al_1998
109 ····*·Example·frompapers/Brette_2012/Fig3CF 
110 ····*·Example·frompapers/Brette_2012/Fig5A109 ····*·Example·frompapers/Brette_2012/Fig5A
111 ····*·Example·frompapers/Brette_2012/Fig4 
112 ····*·Example·frompapers/Brette_2012/Fig3AB 
113 ····*·Example·frompapers/Brette_2012/Fig1110 ····*·Example·frompapers/Brette_2012/Fig1
 111 ····*·Example·frompapers/Brette_2012/Fig3AB
 112 ····*·Example·frompapers/Brette_2012/Fig4
 113 ····*·Example·frompapers/Brette_2012/Fig3CF
114 ····*·Example·compartmental/lfp 
115 ····*·Example·compartmental/hodgkin_huxley_1952 
116 ····*·Example·compartmental/bipolar_with_inputs2 
117 ····*·Example·compartmental/bipolar_with_inputs 
118 ····*·Example·compartmental/rall114 ····*·Example·compartmental/rall
119 ····*·Example·compartmental/spike_initiation115 ····*·Example·compartmental/lfp
120 ····*·Example·compartmental/infinite_cable116 ····*·Example·compartmental/infinite_cable
121 ····*·Example·compartmental/morphotest 
122 ····*·Example·compartmental/cylinder117 ····*·Example·compartmental/cylinder
123 ····*·Example·compartmental/hh_with_spikes118 ····*·Example·compartmental/hh_with_spikes
 119 ····*·Example·compartmental/hodgkin_huxley_1952
 120 ····*·Example·compartmental/spike_initiation
 121 ····*·Example·compartmental/bipolar_with_inputs2
 122 ····*·Example·compartmental/morphotest
124 ····*·Example·compartmental/bipolar_cell123 ····*·Example·compartmental/bipolar_cell
 124 ····*·Example·compartmental/bipolar_with_inputs
125 [Logo]125 [Logo]
126 ******·Brian_2·******126 ******·Brian_2·******
127 ****·Navigation·****127 ****·Navigation·****
128 ····*·Introduction128 ····*·Introduction
129 ····*·User’s_guide129 ····*·User’s_guide
130 ····*·Advanced_guide130 ····*·Advanced_guide
131 ····*·Examples131 ····*·Examples
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421 </dd></dl>421 </dd></dl>
  
422 </dd></dl>422 </dd></dl>
  
423 <div·class="section"·id="tutorials-and-examples-using-this">423 <div·class="section"·id="tutorials-and-examples-using-this">
424 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>424 <h2>Tutorials·and·examples·using·this<a·class="headerlink"·href="#tutorials-and-examples-using-this"·title="Permalink·to·this·headline">¶</a></h2>
425 <ul·class="simple">425 <ul·class="simple">
 426 <li><p>Tutorial·<span·class="xref·std·std-doc">3-intro-to-brian-simulations</span></p></li>
426 <li><p>Tutorial·<span·class="xref·std·std-doc">1-intro-to-brian-neurons</span></p></li>427 <li><p>Tutorial·<span·class="xref·std·std-doc">1-intro-to-brian-neurons</span></p></li>
427 <li><p>Tutorial·<span·class="xref·std·std-doc">2-intro-to-brian-synapses</span></p></li>428 <li><p>Tutorial·<span·class="xref·std·std-doc">2-intro-to-brian-synapses</span></p></li>
428 <li><p>Tutorial·<span·class="xref·std·std-doc">3-intro-to-brian-simulations</span></p></li> 
429 <li><p>Example·<a·class="reference·internal"·href="../examples/adaptive_threshold.html"><span·class="doc">adaptive_threshold</span></a></p></li> 
430 <li><p>Example·<a·class="reference·internal"·href="../examples/CUBA.html"><span·class="doc">CUBA</span></a></p></li> 
431 <li><p>Example·<a·class="reference·internal"·href="../examples/COBAHH.html"><span·class="doc">COBAHH</span></a></p></li>429 <li><p>Example·<a·class="reference·internal"·href="../examples/COBAHH.html"><span·class="doc">COBAHH</span></a></p></li>
 430 <li><p>Example·<a·class="reference·internal"·href="../examples/CUBA.html"><span·class="doc">CUBA</span></a></p></li>
432 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.custom_events.html"><span·class="doc">advanced/custom_events</span></a></p></li>431 <li><p>Example·<a·class="reference·internal"·href="../examples/adaptive_threshold.html"><span·class="doc">adaptive_threshold</span></a></p></li>
 432 <li><p>Example·<a·class="reference·internal"·href="../examples/standalone.STDP_standalone.html"><span·class="doc">standalone/STDP_standalone</span></a></p></li>
433 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.float_32_64_benchmark.html"><span·class="doc">advanced/float_32_64_benchmark</span></a></p></li>433 <li><p>Example·<a·class="reference·internal"·href="../examples/standalone.cuba_openmp.html"><span·class="doc">standalone/cuba_openmp</span></a></p></li>
434 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Kremer_et_al_2011_barrel_cortex.html"><span·class="doc">frompapers/Kremer_et_al_2011_barrel_cortex</span></a></p></li>434 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.synapses.html"><span·class="doc">synapses/synapses</span></a></p></li>
 435 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.jeffress.html"><span·class="doc">synapses/jeffress</span></a></p></li>
 436 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.gapjunctions.html"><span·class="doc">synapses/gapjunctions</span></a></p></li>
 437 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.spatial_connections.html"><span·class="doc">synapses/spatial_connections</span></a></p></li>
 438 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.licklider.html"><span·class="doc">synapses/licklider</span></a></p></li>
 439 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.efficient_gaussian_connectivity.html"><span·class="doc">synapses/efficient_gaussian_connectivity</span></a></p></li>
 440 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.STDP.html"><span·class="doc">synapses/STDP</span></a></p></li>
 441 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.state_variables.html"><span·class="doc">synapses/state_variables</span></a></p></li>
435 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brunel_Wang_2001.html"><span·class="doc">frompapers/Brunel_Wang_2001</span></a></p></li>442 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.nonlinear.html"><span·class="doc">synapses/nonlinear</span></a></p></li>
436 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Diesmann_et_al_1999.html"><span·class="doc">frompapers/Diesmann_et_al_1999</span></a></p></li>443 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Vogels_et_al_2011.html"><span·class="doc">frompapers/Vogels_et_al_2011</span></a></p></li>
437 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Clopath_et_al_2010_no_homeostasis.html"><span·class="doc">frompapers/Clopath_et_al_2010_no_homeostasis</span></a></p></li> 
438 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brunel_Hakim_1999.html"><span·class="doc">frompapers/Brunel_Hakim_1999</span></a></p></li>444 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brunel_Hakim_1999.html"><span·class="doc">frompapers/Brunel_Hakim_1999</span></a></p></li>
439 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Izhikevich_2007.html"><span·class="doc">frompapers/Izhikevich_2007</span></a></p></li>445 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Diesmann_et_al_1999.html"><span·class="doc">frompapers/Diesmann_et_al_1999</span></a></p></li>
440 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Sturzl_et_al_2000.html"><span·class="doc">frompapers/Sturzl_et_al_2000</span></a></p></li>446 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Sturzl_et_al_2000.html"><span·class="doc">frompapers/Sturzl_et_al_2000</span></a></p></li>
 447 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brunel_Wang_2001.html"><span·class="doc">frompapers/Brunel_Wang_2001</span></a></p></li>
441 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Clopath_et_al_2010_homeostasis.html"><span·class="doc">frompapers/Clopath_et_al_2010_homeostasis</span></a></p></li>448 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Clopath_et_al_2010_homeostasis.html"><span·class="doc">frompapers/Clopath_et_al_2010_homeostasis</span></a></p></li>
 449 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Kremer_et_al_2011_barrel_cortex.html"><span·class="doc">frompapers/Kremer_et_al_2011_barrel_cortex</span></a></p></li>
 450 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Izhikevich_2007.html"><span·class="doc">frompapers/Izhikevich_2007</span></a></p></li>
 451 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Clopath_et_al_2010_no_homeostasis.html"><span·class="doc">frompapers/Clopath_et_al_2010_no_homeostasis</span></a></p></li>
442 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Vogels_et_al_2011.html"><span·class="doc">frompapers/Vogels_et_al_2011</span></a></p></li>452 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig5A.html"><span·class="doc">frompapers/Brette_2012/Fig5A</span></a></p></li>
443 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_2_gchi_astrocyte.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte</span></a></p></li> 
444 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_1_COBA.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_1_COBA</span></a></p></li> 
445 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_5_astro_ring.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_5_astro_ring</span></a></p></li> 
446 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_6_COBA_with_astro.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro</span></a></p></li> 
447 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_4_synrel.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_4_synrel</span></a></p></li> 
448 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_4_rsmean.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_4_rsmean</span></a></p></li>453 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_4_rsmean.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_4_rsmean</span></a></p></li>
449 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_3_io_synapse.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_3_io_synapse</span></a></p></li>454 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_3_io_synapse.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_3_io_synapse</span></a></p></li>
 455 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_4_synrel.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_4_synrel</span></a></p></li>
 456 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_6_COBA_with_astro.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro</span></a></p></li>
450 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Brette_2012.Fig5A.html"><span·class="doc">frompapers/Brette_2012/Fig5A</span></a></p></li>457 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_1_COBA.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_1_COBA</span></a></p></li>
 458 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_5_astro_ring.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_5_astro_ring</span></a></p></li>
 459 <li><p>Example·<a·class="reference·internal"·href="../examples/frompapers.Stimberg_et_al_2018.example_2_gchi_astrocyte.html"><span·class="doc">frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte</span></a></p></li>
451 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.nonlinear.html"><span·class="doc">synapses/nonlinear</span></a></p></li> 
452 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.gapjunctions.html"><span·class="doc">synapses/gapjunctions</span></a></p></li> 
453 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.efficient_gaussian_connectivity.html"><span·class="doc">synapses/efficient_gaussian_connectivity</span></a></p></li> 
454 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.synapses.html"><span·class="doc">synapses/synapses</span></a></p></li> 
455 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.STDP.html"><span·class="doc">synapses/STDP</span></a></p></li> 
456 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.licklider.html"><span·class="doc">synapses/licklider</span></a></p></li> 
457 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.jeffress.html"><span·class="doc">synapses/jeffress</span></a></p></li> 
458 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.state_variables.html"><span·class="doc">synapses/state_variables</span></a></p></li> 
459 <li><p>Example·<a·class="reference·internal"·href="../examples/synapses.spatial_connections.html"><span·class="doc">synapses/spatial_connections</span></a></p></li> 
460 <li><p>Example·<a·class="reference·internal"·href="../examples/standalone.cuba_openmp.html"><span·class="doc">standalone/cuba_openmp</span></a></p></li> 
461 <li><p>Example·<a·class="reference·internal"·href="../examples/standalone.STDP_standalone.html"><span·class="doc">standalone/STDP_standalone</span></a></p></li> 
462 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.lfp.html"><span·class="doc">compartmental/lfp</span></a></p></li>460 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.lfp.html"><span·class="doc">compartmental/lfp</span></a></p></li>
463 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_with_inputs2.html"><span·class="doc">compartmental/bipolar_with_inputs2</span></a></p></li>461 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_with_inputs2.html"><span·class="doc">compartmental/bipolar_with_inputs2</span></a></p></li>
464 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_with_inputs.html"><span·class="doc">compartmental/bipolar_with_inputs</span></a></p></li>462 <li><p>Example·<a·class="reference·internal"·href="../examples/compartmental.bipolar_with_inputs.html"><span·class="doc">compartmental/bipolar_with_inputs</span></a></p></li>
 463 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.float_32_64_benchmark.html"><span·class="doc">advanced/float_32_64_benchmark</span></a></p></li>
 464 <li><p>Example·<a·class="reference·internal"·href="../examples/advanced.custom_events.html"><span·class="doc">advanced/custom_events</span></a></p></li>
465 </ul>465 </ul>
466 </div>466 </div>
467 </div>467 </div>
  
  
468 ··········</div>468 ··········</div>
469 ········</div>469 ········</div>
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232 ········register_variable(variable)[source]¶232 ········register_variable(variable)[source]¶
233 ············Register·a·DynamicArray·to·be·automatically·resized·when·the·size233 ············Register·a·DynamicArray·to·be·automatically·resized·when·the·size
234 ············of·the·indices·change.·Called·automatically·when·a234 ············of·the·indices·change.·Called·automatically·when·a
235 ············SynapticArrayVariable·specifier·is·created.235 ············SynapticArrayVariable·specifier·is·created.
236 ········unregister_variable(variable)[source]¶236 ········unregister_variable(variable)[source]¶
237 ············Unregister·a·DynamicArray·from·the·automatic·resizing·mechanism.237 ············Unregister·a·DynamicArray·from·the·automatic·resizing·mechanism.
238 *****·Tutorials·and·examples·using·this¶·*****238 *****·Tutorials·and·examples·using·this¶·*****
 239 ····*·Tutorial·3-intro-to-brian-simulations
239 ····*·Tutorial·1-intro-to-brian-neurons240 ····*·Tutorial·1-intro-to-brian-neurons
240 ····*·Tutorial·2-intro-to-brian-synapses241 ····*·Tutorial·2-intro-to-brian-synapses
241 ····*·Tutorial·3-intro-to-brian-simulations 
242 ····*·Example·adaptive_threshold 
243 ····*·Example·CUBA 
244 ····*·Example·COBAHH242 ····*·Example·COBAHH
245 ····*·Example·advanced/custom_events 
246 ····*·Example·advanced/float_32_64_benchmark 
247 ····*·Example·frompapers/Kremer_et_al_2011_barrel_cortex 
248 ····*·Example·frompapers/Brunel_Wang_2001243 ····*·Example·CUBA
 244 ····*·Example·adaptive_threshold
 245 ····*·Example·standalone/STDP_standalone
 246 ····*·Example·standalone/cuba_openmp
 247 ····*·Example·synapses/synapses
 248 ····*·Example·synapses/jeffress
 249 ····*·Example·synapses/gapjunctions
 250 ····*·Example·synapses/spatial_connections
 251 ····*·Example·synapses/licklider
 252 ····*·Example·synapses/efficient_gaussian_connectivity
 253 ····*·Example·synapses/STDP
 254 ····*·Example·synapses/state_variables
 255 ····*·Example·synapses/nonlinear
249 ····*·Example·frompapers/Diesmann_et_al_1999256 ····*·Example·frompapers/Vogels_et_al_2011
250 ····*·Example·frompapers/Clopath_et_al_2010_no_homeostasis 
251 ····*·Example·frompapers/Brunel_Hakim_1999257 ····*·Example·frompapers/Brunel_Hakim_1999
252 ····*·Example·frompapers/Izhikevich_2007258 ····*·Example·frompapers/Diesmann_et_al_1999
253 ····*·Example·frompapers/Sturzl_et_al_2000259 ····*·Example·frompapers/Sturzl_et_al_2000
 260 ····*·Example·frompapers/Brunel_Wang_2001
254 ····*·Example·frompapers/Clopath_et_al_2010_homeostasis261 ····*·Example·frompapers/Clopath_et_al_2010_homeostasis
255 ····*·Example·frompapers/Vogels_et_al_2011262 ····*·Example·frompapers/Kremer_et_al_2011_barrel_cortex
 263 ····*·Example·frompapers/Izhikevich_2007
 264 ····*·Example·frompapers/Clopath_et_al_2010_no_homeostasis
 265 ····*·Example·frompapers/Brette_2012/Fig5A
256 ····*·Example·frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte 
257 ····*·Example·frompapers/Stimberg_et_al_2018/example_1_COBA 
258 ····*·Example·frompapers/Stimberg_et_al_2018/example_5_astro_ring 
259 ····*·Example·frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro 
260 ····*·Example·frompapers/Stimberg_et_al_2018/example_4_synrel 
261 ····*·Example·frompapers/Stimberg_et_al_2018/example_4_rsmean266 ····*·Example·frompapers/Stimberg_et_al_2018/example_4_rsmean
262 ····*·Example·frompapers/Stimberg_et_al_2018/example_3_io_synapse267 ····*·Example·frompapers/Stimberg_et_al_2018/example_3_io_synapse
 268 ····*·Example·frompapers/Stimberg_et_al_2018/example_4_synrel
 269 ····*·Example·frompapers/Stimberg_et_al_2018/example_6_COBA_with_astro
 270 ····*·Example·frompapers/Stimberg_et_al_2018/example_1_COBA
 271 ····*·Example·frompapers/Stimberg_et_al_2018/example_5_astro_ring
 272 ····*·Example·frompapers/Stimberg_et_al_2018/example_2_gchi_astrocyte
263 ····*·Example·frompapers/Brette_2012/Fig5A 
264 ····*·Example·synapses/nonlinear 
265 ····*·Example·synapses/gapjunctions 
266 ····*·Example·synapses/efficient_gaussian_connectivity 
267 ····*·Example·synapses/synapses 
268 ····*·Example·synapses/STDP 
269 ····*·Example·synapses/licklider 
270 ····*·Example·synapses/jeffress 
271 ····*·Example·synapses/state_variables 
272 ····*·Example·synapses/spatial_connections 
273 ····*·Example·standalone/cuba_openmp 
274 ····*·Example·standalone/STDP_standalone 
275 ····*·Example·compartmental/lfp273 ····*·Example·compartmental/lfp
276 ····*·Example·compartmental/bipolar_with_inputs2274 ····*·Example·compartmental/bipolar_with_inputs2
277 ····*·Example·compartmental/bipolar_with_inputs275 ····*·Example·compartmental/bipolar_with_inputs
 276 ····*·Example·advanced/float_32_64_benchmark
 277 ····*·Example·advanced/custom_events
278 [Logo]278 [Logo]
279 ******·Brian_2·******279 ******·Brian_2·******
280 ****·Navigation·****280 ****·Navigation·****
281 ····*·Introduction281 ····*·Introduction
282 ····*·User’s_guide282 ····*·User’s_guide
283 ····*·Advanced_guide283 ····*·Advanced_guide
284 ····*·Examples284 ····*·Examples
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