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640 | -rw-r--r--···0·root·········(0)·root·········(0)····14639·2020-07-17·13:43:36.000000·./usr/share/doc/python-pydicom-doc/html/release_notes/v1.2.0.html | 640 | -rw-r--r--···0·root·········(0)·root·········(0)····14639·2020-07-17·13:43:36.000000·./usr/share/doc/python-pydicom-doc/html/release_notes/v1.2.0.html |
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642 | -rw-r--r--···0·root·········(0)·root·········(0)····17042·2020-07-17·13:43:36.000000·./usr/share/doc/python-pydicom-doc/html/release_notes/v1.4.0.html | 642 | -rw-r--r--···0·root·········(0)·root·········(0)····17042·2020-07-17·13:43:36.000000·./usr/share/doc/python-pydicom-doc/html/release_notes/v1.4.0.html |
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644 | -rw-r--r--···0·root·········(0)·root·········(0)····12963·2020-07-17·13:43:36.000000·./usr/share/doc/python-pydicom-doc/html/release_notes/v2.0.0.html | 644 | -rw-r--r--···0·root·········(0)·root·········(0)····12963·2020-07-17·13:43:36.000000·./usr/share/doc/python-pydicom-doc/html/release_notes/v2.0.0.html |
645 | -rw-r--r--···0·root·········(0)·root·········(0)·····6579·2020-07-17·13:43:36.000000·./usr/share/doc/python-pydicom-doc/html/search.html | 645 | -rw-r--r--···0·root·········(0)·root·········(0)·····6579·2020-07-17·13:43:36.000000·./usr/share/doc/python-pydicom-doc/html/search.html |
646 | -rw-r--r--···0·root·········(0)·root·········(0)···14116 | 646 | -rw-r--r--···0·root·········(0)·root·········(0)···141169·2020-07-17·13:43:36.000000·./usr/share/doc/python-pydicom-doc/html/searchindex.js |
647 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-07-17·13:43:36.000000·./usr/share/doc/python-pydicom-doc/html/tutorials/ | 647 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2020-07-17·13:43:36.000000·./usr/share/doc/python-pydicom-doc/html/tutorials/ |
648 | -rw-r--r--···0·root·········(0)·root·········(0)·····8748·2020-07-17·13:43:36.000000·./usr/share/doc/python-pydicom-doc/html/tutorials/contributing.html | 648 | -rw-r--r--···0·root·········(0)·root·········(0)·····8748·2020-07-17·13:43:36.000000·./usr/share/doc/python-pydicom-doc/html/tutorials/contributing.html |
649 | -rw-r--r--···0·root·········(0)·root·········(0)····28136·2020-07-17·13:43:36.000000·./usr/share/doc/python-pydicom-doc/html/tutorials/contributing_code.html | 649 | -rw-r--r--···0·root·········(0)·root·········(0)····28136·2020-07-17·13:43:36.000000·./usr/share/doc/python-pydicom-doc/html/tutorials/contributing_code.html |
650 | -rw-r--r--···0·root·········(0)·root·········(0)····25225·2020-07-17·13:43:36.000000·./usr/share/doc/python-pydicom-doc/html/tutorials/contributing_docs.html | 650 | -rw-r--r--···0·root·········(0)·root·········(0)····25225·2020-07-17·13:43:36.000000·./usr/share/doc/python-pydicom-doc/html/tutorials/contributing_docs.html |
651 | -rw-r--r--···0·root·········(0)·root·········(0)····71665·2020-07-17·13:43:36.000000·./usr/share/doc/python-pydicom-doc/html/tutorials/dataset_basics.html | 651 | -rw-r--r--···0·root·········(0)·root·········(0)····71665·2020-07-17·13:43:36.000000·./usr/share/doc/python-pydicom-doc/html/tutorials/dataset_basics.html |
652 | -rw-r--r--···0·root·········(0)·root·········(0)····19894·2020-07-17·13:43:36.000000·./usr/share/doc/python-pydicom-doc/html/tutorials/dicom_json.html | 652 | -rw-r--r--···0·root·········(0)·root·········(0)····19894·2020-07-17·13:43:36.000000·./usr/share/doc/python-pydicom-doc/html/tutorials/dicom_json.html |
653 | -rw-r--r--···0·root·········(0)·root·········(0)·····8864·2020-07-17·13:43:36.000000·./usr/share/doc/python-pydicom-doc/html/tutorials/index.html | 653 | -rw-r--r--···0·root·········(0)·root·········(0)·····8864·2020-07-17·13:43:36.000000·./usr/share/doc/python-pydicom-doc/html/tutorials/index.html |
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168 | ····#·print·the·image·information·given·in·the·dataset | 168 | ····#·print·the·image·information·given·in·the·dataset |
169 | ····print('The·information·of·the·data·set·after·downsampling:·\n') | 169 | ····print('The·information·of·the·data·set·after·downsampling:·\n') |
170 | ····print(ds) | 170 | ····print(ds) |
171 | ..·rst-class::·sphx-glr-timing | 171 | ..·rst-class::·sphx-glr-timing |
172 | ···**Total·running·time·of·the·script:**·(·0·minutes··0.01 | 172 | ···**Total·running·time·of·the·script:**·(·0·minutes··0.012·seconds) |
173 | ..·_sphx_glr_download_auto_examples_image_processing_plot_downsize_image.py: | 173 | ..·_sphx_glr_download_auto_examples_image_processing_plot_downsize_image.py: |
174 | ..·only·::·html | 174 | ..·only·::·html |
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1 | :orphan: | 1 | :orphan: |
2 | ..·_sphx_glr_auto_examples_image_processing_sg_execution_times: | 2 | ..·_sphx_glr_auto_examples_image_processing_sg_execution_times: |
3 | Computation·times | 3 | Computation·times |
4 | ================= | 4 | ================= |
5 | **00:00.01 | 5 | **00:00.012**·total·execution·time·for·**auto_examples_image_processing**·files: |
6 | +----------------------------------------------------------------------------------------------------+-----------+--------+ | 6 | +----------------------------------------------------------------------------------------------------+-----------+--------+ |
7 | |·:ref:`sphx_glr_auto_examples_image_processing_plot_downsize_image.py`·(``plot_downsize_image.py``)·|·00:00.01 | 7 | |·:ref:`sphx_glr_auto_examples_image_processing_plot_downsize_image.py`·(``plot_downsize_image.py``)·|·00:00.012·|·0.0·MB·| |
8 | +----------------------------------------------------------------------------------------------------+-----------+--------+ | 8 | +----------------------------------------------------------------------------------------------------+-----------+--------+ |
9 | |·:ref:`sphx_glr_auto_examples_image_processing_reslice.py`·(``reslice.py``)·························|·00:00.000·|·0.0·MB·| | 9 | |·:ref:`sphx_glr_auto_examples_image_processing_reslice.py`·(``reslice.py``)·························|·00:00.000·|·0.0·MB·| |
10 | +----------------------------------------------------------------------------------------------------+-----------+--------+ | 10 | +----------------------------------------------------------------------------------------------------+-----------+--------+ |
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161 | ····ds·=·pydicom.dcmread(filename) | 161 | ····ds·=·pydicom.dcmread(filename) |
162 | ····myprint(ds) | 162 | ····myprint(ds) |
163 | ..·rst-class::·sphx-glr-timing | 163 | ..·rst-class::·sphx-glr-timing |
164 | ···**Total·running·time·of·the·script:**·(·0·minutes··0.0 | 164 | ···**Total·running·time·of·the·script:**·(·0·minutes··0.011·seconds) |
165 | ..·_sphx_glr_download_auto_examples_input_output_plot_printing_dataset.py: | 165 | ..·_sphx_glr_download_auto_examples_input_output_plot_printing_dataset.py: |
166 | ..·only·::·html | 166 | ..·only·::·html |
Offset 102, 15 lines modified | Offset 102, 15 lines modified | ||
102 | ····#·plot·the·image·using·matplotlib | 102 | ····#·plot·the·image·using·matplotlib |
103 | ····plt.imshow(dataset.pixel_array,·cmap=plt.cm.bone) | 103 | ····plt.imshow(dataset.pixel_array,·cmap=plt.cm.bone) |
104 | ····plt.show() | 104 | ····plt.show() |
105 | ..·rst-class::·sphx-glr-timing | 105 | ..·rst-class::·sphx-glr-timing |
106 | ···**Total·running·time·of·the·script:**·(·0·minutes··0. | 106 | ···**Total·running·time·of·the·script:**·(·0·minutes··0.188·seconds) |
107 | ..·_sphx_glr_download_auto_examples_input_output_plot_read_dicom.py: | 107 | ..·_sphx_glr_download_auto_examples_input_output_plot_read_dicom.py: |
108 | ..·only·::·html | 108 | ..·only·::·html |
Offset 233, 15 lines modified | Offset 233, 15 lines modified | ||
233 | ····················patient_names)) | 233 | ····················patient_names)) |
234 | ················print("·"·*·12·+·"Patient·IDs·in·images..:·{}".format( | 234 | ················print("·"·*·12·+·"Patient·IDs·in·images..:·{}".format( |
235 | ····················patient_IDs)) | 235 | ····················patient_IDs)) |
236 | ..·rst-class::·sphx-glr-timing | 236 | ..·rst-class::·sphx-glr-timing |
237 | ···**Total·running·time·of·the·script:**·(·0·minutes··0.08 | 237 | ···**Total·running·time·of·the·script:**·(·0·minutes··0.081·seconds) |
238 | ..·_sphx_glr_download_auto_examples_input_output_plot_read_dicom_directory.py: | 238 | ..·_sphx_glr_download_auto_examples_input_output_plot_read_dicom_directory.py: |
239 | ..·only·::·html | 239 | ..·only·::·html |
Offset 35, 40 lines modified | Offset 35, 40 lines modified | ||
35 | ·Out: | 35 | ·Out: |
36 | ·..·code-block::·none | 36 | ·..·code-block::·none |
37 | ····Setting·file·meta·information... | 37 | ····Setting·file·meta·information... |
38 | ····Setting·dataset·values... | 38 | ····Setting·dataset·values... |
39 | ····Writing·test·file·/tmp/tmp | 39 | ····Writing·test·file·/tmp/tmpq_794qsj.dcm |
40 | ····File·saved. | 40 | ····File·saved. |
41 | ····Writing·test·file·as·Big·Endian·Explicit·VR·/tmp/tmp | 41 | ····Writing·test·file·as·Big·Endian·Explicit·VR·/tmp/tmph8h_9vdd.dcm |
42 | ····Load·file·/tmp/tmp | 42 | ····Load·file·/tmp/tmpq_794qsj.dcm·... |
43 | ····Dataset.file_meta·------------------------------- | 43 | ····Dataset.file_meta·------------------------------- |
44 | ····(0002,·0002)·Media·Storage·SOP·Class·UID·········UI:·CT·Image·Storage | 44 | ····(0002,·0002)·Media·Storage·SOP·Class·UID·········UI:·CT·Image·Storage |
45 | ····(0002,·0003)·Media·Storage·SOP·Instance·UID······UI:·1.2.3 | 45 | ····(0002,·0003)·Media·Storage·SOP·Instance·UID······UI:·1.2.3 |
46 | ····(0002,·0012)·Implementation·Class·UID············UI:·1.2.3.4 | 46 | ····(0002,·0012)·Implementation·Class·UID············UI:·1.2.3.4 |
47 | ····------------------------------------------------- | 47 | ····------------------------------------------------- |
48 | ····(0008,·0023)·Content·Date························DA:·'202 | 48 | ····(0008,·0023)·Content·Date························DA:·'20250209' |
49 | ····(0008,·0033)·Content·Time························TM:·' | 49 | ····(0008,·0033)·Content·Time························TM:·'170239.922679' |
50 | ····(0010,·0010)·Patient's·Name······················PN:·'Test^Firstname' | 50 | ····(0010,·0010)·Patient's·Name······················PN:·'Test^Firstname' |
51 | ····(0010,·0020)·Patient·ID··························LO:·'123456' | 51 | ····(0010,·0020)·Patient·ID··························LO:·'123456' |
52 | ····Remove·file·/tmp/tmp | 52 | ····Remove·file·/tmp/tmpq_794qsj.dcm·... |
53 | ····Load·file·/tmp/tmp | 53 | ····Load·file·/tmp/tmph8h_9vdd.dcm·... |
54 | ····Dataset.file_meta·------------------------------- | 54 | ····Dataset.file_meta·------------------------------- |
55 | ····(0002,·0002)·Media·Storage·SOP·Class·UID·········UI:·CT·Image·Storage | 55 | ····(0002,·0002)·Media·Storage·SOP·Class·UID·········UI:·CT·Image·Storage |
56 | ····(0002,·0003)·Media·Storage·SOP·Instance·UID······UI:·1.2.3 | 56 | ····(0002,·0003)·Media·Storage·SOP·Instance·UID······UI:·1.2.3 |
57 | ····(0002,·0010)·Transfer·Syntax·UID·················UI:·Explicit·VR·Big·Endian | 57 | ····(0002,·0010)·Transfer·Syntax·UID·················UI:·Explicit·VR·Big·Endian |
58 | ····(0002,·0012)·Implementation·Class·UID············UI:·1.2.3.4 | 58 | ····(0002,·0012)·Implementation·Class·UID············UI:·1.2.3.4 |
59 | ····------------------------------------------------- | 59 | ····------------------------------------------------- |
60 | ····(0008,·0023)·Content·Date························DA:·'202 | 60 | ····(0008,·0023)·Content·Date························DA:·'20250209' |
61 | ····(0008,·0033)·Content·Time························TM:·' | 61 | ····(0008,·0033)·Content·Time························TM:·'170239.922679' |
62 | ····(0010,·0010)·Patient's·Name······················PN:·'Test^Firstname' | 62 | ····(0010,·0010)·Patient's·Name······················PN:·'Test^Firstname' |
63 | ····(0010,·0020)·Patient·ID··························LO:·'123456' | 63 | ····(0010,·0020)·Patient·ID··························LO:·'123456' |
64 | ····Remove·file·/tmp/tmp | 64 | ····Remove·file·/tmp/tmph8h_9vdd.dcm·... |
65 | | | 65 | | |
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1 | :orphan: | 1 | :orphan: |
2 | ..·_sphx_glr_auto_examples_input_output_sg_execution_times: | 2 | ..·_sphx_glr_auto_examples_input_output_sg_execution_times: |
3 | Computation·times | 3 | Computation·times |
4 | ================= | 4 | ================= |
5 | **00:00. | 5 | **00:00.293**·total·execution·time·for·**auto_examples_input_output**·files: |
6 | +------------------------------------------------------------------------------------------------------------+-----------+--------+ | 6 | +------------------------------------------------------------------------------------------------------------+-----------+--------+ |
7 | |·:ref:`sphx_glr_auto_examples_input_output_plot_read_dicom.py`·(``plot_read_dicom.py``)·····················|·00:00. | 7 | |·:ref:`sphx_glr_auto_examples_input_output_plot_read_dicom.py`·(``plot_read_dicom.py``)·····················|·00:00.188·|·0.0·MB·| |
8 | +------------------------------------------------------------------------------------------------------------+-----------+--------+ | 8 | +------------------------------------------------------------------------------------------------------------+-----------+--------+ |
9 | |·:ref:`sphx_glr_auto_examples_input_output_plot_read_dicom_directory.py`·(``plot_read_dicom_directory.py``)·|·00:00.08 | 9 | |·:ref:`sphx_glr_auto_examples_input_output_plot_read_dicom_directory.py`·(``plot_read_dicom_directory.py``)·|·00:00.081·|·0.0·MB·| |
10 | +------------------------------------------------------------------------------------------------------------+-----------+--------+ | 10 | +------------------------------------------------------------------------------------------------------------+-----------+--------+ |
11 | |·:ref:`sphx_glr_auto_examples_input_output_plot_printing_dataset.py`·(``plot_printing_dataset.py``)·········|·00:00.0 | 11 | |·:ref:`sphx_glr_auto_examples_input_output_plot_printing_dataset.py`·(``plot_printing_dataset.py``)·········|·00:00.011·|·0.0·MB·| |
12 | +------------------------------------------------------------------------------------------------------------+-----------+--------+ | 12 | +------------------------------------------------------------------------------------------------------------+-----------+--------+ |
13 | |·:ref:`sphx_glr_auto_examples_input_output_plot_write_dicom.py`·(``plot_write_dicom.py``)···················|·00:00.008·|·0.0·MB·| | 13 | |·:ref:`sphx_glr_auto_examples_input_output_plot_write_dicom.py`·(``plot_write_dicom.py``)···················|·00:00.008·|·0.0·MB·| |
14 | +------------------------------------------------------------------------------------------------------------+-----------+--------+ | 14 | +------------------------------------------------------------------------------------------------------------+-----------+--------+ |
15 | |·:ref:`sphx_glr_auto_examples_input_output_plot_read_rtplan.py`·(``plot_read_rtplan.py``)···················|·00:00.006·|·0.0·MB·| | 15 | |·:ref:`sphx_glr_auto_examples_input_output_plot_read_rtplan.py`·(``plot_read_rtplan.py``)···················|·00:00.006·|·0.0·MB·| |
16 | +------------------------------------------------------------------------------------------------------------+-----------+--------+ | 16 | +------------------------------------------------------------------------------------------------------------+-----------+--------+ |
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227 | ..·rst-class::·sphx-glr-timing | 227 | ..·rst-class::·sphx-glr-timing |
228 | ···**Total·running·time·of·the·script:**·(·0·minutes··0.01 | 228 | ···**Total·running·time·of·the·script:**·(·0·minutes··0.015·seconds) |
229 | ..·_sphx_glr_download_auto_examples_metadata_processing_plot_anonymize.py: | 229 | ..·_sphx_glr_download_auto_examples_metadata_processing_plot_anonymize.py: |
230 | ..·only·::·html | 230 | ..·only·::·html |
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1 | :orphan: | 1 | :orphan: |
2 | ..·_sphx_glr_auto_examples_metadata_processing_sg_execution_times: | 2 | ..·_sphx_glr_auto_examples_metadata_processing_sg_execution_times: |
3 | Computation·times | 3 | Computation·times |
4 | ================= | 4 | ================= |
5 | **00:00.0 | 5 | **00:00.019**·total·execution·time·for·**auto_examples_metadata_processing**·files: |
6 | +-----------------------------------------------------------------------------------------------------------+-----------+--------+ | 6 | +-----------------------------------------------------------------------------------------------------------+-----------+--------+ |
7 | |·:ref:`sphx_glr_auto_examples_metadata_processing_plot_anonymize.py`·(``plot_anonymize.py``)···············|·00:00.01 | 7 | |·:ref:`sphx_glr_auto_examples_metadata_processing_plot_anonymize.py`·(``plot_anonymize.py``)···············|·00:00.015·|·0.0·MB·| |
8 | +-----------------------------------------------------------------------------------------------------------+-----------+--------+ | 8 | +-----------------------------------------------------------------------------------------------------------+-----------+--------+ |
9 | |·:ref:`sphx_glr_auto_examples_metadata_processing_plot_add_dict_entries.py`·(``plot_add_dict_entries.py``)·|·00:00.002·|·0.0·MB·| | 9 | |·:ref:`sphx_glr_auto_examples_metadata_processing_plot_add_dict_entries.py`·(``plot_add_dict_entries.py``)·|·00:00.002·|·0.0·MB·| |
10 | +-----------------------------------------------------------------------------------------------------------+-----------+--------+ | 10 | +-----------------------------------------------------------------------------------------------------------+-----------+--------+ |
11 | |·:ref:`sphx_glr_auto_examples_metadata_processing_plot_sequences.py`·(``plot_sequences.py``)···············|·00:00.002·|·0.0·MB·| | 11 | |·:ref:`sphx_glr_auto_examples_metadata_processing_plot_sequences.py`·(``plot_sequences.py``)···············|·00:00.002·|·0.0·MB·| |
12 | +-----------------------------------------------------------------------------------------------------------+-----------+--------+ | 12 | +-----------------------------------------------------------------------------------------------------------+-----------+--------+ |
Offset 747, 15 lines modified | Offset 747, 15 lines modified | ||
747 | ····for·line·in·diff.compare(rep[0],·rep[1]): | 747 | ····for·line·in·diff.compare(rep[0],·rep[1]): |
748 | ········if·line[0]·!=·"?": | 748 | ········if·line[0]·!=·"?": |
749 | ············print(line) | 749 | ············print(line) |
750 | ..·rst-class::·sphx-glr-timing | 750 | ..·rst-class::·sphx-glr-timing |
751 | ···**Total·running·time·of·the·script:**·(·0·minutes··0. | 751 | ···**Total·running·time·of·the·script:**·(·0·minutes··0.196·seconds) |
752 | ..·_sphx_glr_download_auto_examples_plot_dicom_difference.py: | 752 | ..·_sphx_glr_download_auto_examples_plot_dicom_difference.py: |
753 | ..·only·::·html | 753 | ..·only·::·html |
Offset 1, 18 lines modified | Offset 1, 18 lines modified | ||
1 | :orphan: | 1 | :orphan: |
2 | ..·_sphx_glr_auto_examples_sg_execution_times: | 2 | ..·_sphx_glr_auto_examples_sg_execution_times: |
3 | Computation·times | 3 | Computation·times |
4 | ================= | 4 | ================= |
5 | **00:00. | 5 | **00:00.196**·total·execution·time·for·**auto_examples**·files: |
6 | +---------------------------------------------------------------------------------------+-----------+--------+ | 6 | +---------------------------------------------------------------------------------------+-----------+--------+ |
7 | |·:ref:`sphx_glr_auto_examples_plot_dicom_difference.py`·(``plot_dicom_difference.py``)·|·00:00. | 7 | |·:ref:`sphx_glr_auto_examples_plot_dicom_difference.py`·(``plot_dicom_difference.py``)·|·00:00.196·|·0.0·MB·| |
8 | +---------------------------------------------------------------------------------------+-----------+--------+ | 8 | +---------------------------------------------------------------------------------------+-----------+--------+ |
9 | |·:ref:`sphx_glr_auto_examples_dicomtree.py`·(``dicomtree.py``)·························|·00:00.000·|·0.0·MB·| | 9 | |·:ref:`sphx_glr_auto_examples_dicomtree.py`·(``dicomtree.py``)·························|·00:00.000·|·0.0·MB·| |
10 | +---------------------------------------------------------------------------------------+-----------+--------+ | 10 | +---------------------------------------------------------------------------------------+-----------+--------+ |
11 | |·:ref:`sphx_glr_auto_examples_memory_dataset.py`·(``memory_dataset.py``)···············|·00:00.000·|·0.0·MB·| | 11 | |·:ref:`sphx_glr_auto_examples_memory_dataset.py`·(``memory_dataset.py``)···············|·00:00.000·|·0.0·MB·| |
12 | +---------------------------------------------------------------------------------------+-----------+--------+ | 12 | +---------------------------------------------------------------------------------------+-----------+--------+ |
13 | |·:ref:`sphx_glr_auto_examples_show_charset_name.py`·(``show_charset_name.py``)·········|·00:00.000·|·0.0·MB·| | 13 | |·:ref:`sphx_glr_auto_examples_show_charset_name.py`·(``show_charset_name.py``)·········|·00:00.000·|·0.0·MB·| |
14 | +---------------------------------------------------------------------------------------+-----------+--------+ | 14 | +---------------------------------------------------------------------------------------+-----------+--------+ |
Offset 324, 15 lines modified | Offset 324, 15 lines modified | ||
324 | <span·class="n">ds</span><span·class="o">.</span><span·class="n">Rows</span><span·class="p">,</span>·<span·class="n">ds</span><span·class="o">.</span><span·class="n">Columns</span>·<span·class="o">=</span>·<span·class="n">data_downsampling</span><span·class="o">.</span><span·class="n">shape</span> | 324 | <span·class="n">ds</span><span·class="o">.</span><span·class="n">Rows</span><span·class="p">,</span>·<span·class="n">ds</span><span·class="o">.</span><span·class="n">Columns</span>·<span·class="o">=</span>·<span·class="n">data_downsampling</span><span·class="o">.</span><span·class="n">shape</span> |
325 | <span·class="c1">#·print·the·image·information·given·in·the·dataset</span> | 325 | <span·class="c1">#·print·the·image·information·given·in·the·dataset</span> |
326 | <span·class="nb">print</span><span·class="p">(</span><span·class="s1">'The·information·of·the·data·set·after·downsampling:·</span><span·class="se">\n</span><span·class="s1">'</span><span·class="p">)</span> | 326 | <span·class="nb">print</span><span·class="p">(</span><span·class="s1">'The·information·of·the·data·set·after·downsampling:·</span><span·class="se">\n</span><span·class="s1">'</span><span·class="p">)</span> |
327 | <span·class="nb">print</span><span·class="p">(</span><span·class="n">ds</span><span·class="p">)</span> | 327 | <span·class="nb">print</span><span·class="p">(</span><span·class="n">ds</span><span·class="p">)</span> |
328 | </pre></div> | 328 | </pre></div> |
329 | </div> | 329 | </div> |
330 | <p·class="sphx-glr-timing"><strong>Total·running·time·of·the·script:</strong>·(·0·minutes··0.01 | 330 | <p·class="sphx-glr-timing"><strong>Total·running·time·of·the·script:</strong>·(·0·minutes··0.012·seconds)</p> |
331 | <div·class="sphx-glr-footer·class·sphx-glr-footer-example·docutils·container"·id="sphx-glr-download-auto-examples-image-processing-plot-downsize-image-py"> | 331 | <div·class="sphx-glr-footer·class·sphx-glr-footer-example·docutils·container"·id="sphx-glr-download-auto-examples-image-processing-plot-downsize-image-py"> |
332 | <div·class="sphx-glr-download·sphx-glr-download-python·docutils·container"> | 332 | <div·class="sphx-glr-download·sphx-glr-download-python·docutils·container"> |
333 | <p><a·class="reference·download·internal"·download=""·href="../../_downloads/032a903dae32dc4e934f88d87905b561/plot_downsize_image.py"><code·class="xref·download·docutils·literal·notranslate"><span·class="pre">Download</span>·<span·class="pre">Python</span>·<span·class="pre">source</span>·<span·class="pre">code:</span>·<span·class="pre">plot_downsize_image.py</span></code></a></p> | 333 | <p><a·class="reference·download·internal"·download=""·href="../../_downloads/032a903dae32dc4e934f88d87905b561/plot_downsize_image.py"><code·class="xref·download·docutils·literal·notranslate"><span·class="pre">Download</span>·<span·class="pre">Python</span>·<span·class="pre">source</span>·<span·class="pre">code:</span>·<span·class="pre">plot_downsize_image.py</span></code></a></p> |
334 | </div> | 334 | </div> |
335 | <div·class="sphx-glr-download·sphx-glr-download-jupyter·docutils·container"> | 335 | <div·class="sphx-glr-download·sphx-glr-download-jupyter·docutils·container"> |
336 | <p><a·class="reference·download·internal"·download=""·href="../../_downloads/76360960a9af7e908b2d5e0b2453183b/plot_downsize_image.ipynb"><code·class="xref·download·docutils·literal·notranslate"><span·class="pre">Download</span>·<span·class="pre">Jupyter</span>·<span·class="pre">notebook:</span>·<span·class="pre">plot_downsize_image.ipynb</span></code></a></p> | 336 | <p><a·class="reference·download·internal"·download=""·href="../../_downloads/76360960a9af7e908b2d5e0b2453183b/plot_downsize_image.ipynb"><code·class="xref·download·docutils·literal·notranslate"><span·class="pre">Download</span>·<span·class="pre">Jupyter</span>·<span·class="pre">notebook:</span>·<span·class="pre">plot_downsize_image.ipynb</span></code></a></p> |
337 | </div> | 337 | </div> |
Offset 168, 15 lines modified | Offset 168, 15 lines modified | ||
168 | ds.PixelData·=·data_downsampling.tobytes() | 168 | ds.PixelData·=·data_downsampling.tobytes() |
169 | #·update·the·information·regarding·the·shape·of·the·data·array | 169 | #·update·the·information·regarding·the·shape·of·the·data·array |
170 | ds.Rows,·ds.Columns·=·data_downsampling.shape | 170 | ds.Rows,·ds.Columns·=·data_downsampling.shape |
171 | #·print·the·image·information·given·in·the·dataset | 171 | #·print·the·image·information·given·in·the·dataset |
172 | print('The·information·of·the·data·set·after·downsampling:·\n') | 172 | print('The·information·of·the·data·set·after·downsampling:·\n') |
173 | print(ds) | 173 | print(ds) |
174 | Total·running·time·of·the·script:·(·0·minutes·0.01 | 174 | Total·running·time·of·the·script:·(·0·minutes·0.012·seconds) |
175 | Download_Python_source_code:_plot_downsize_image.py | 175 | Download_Python_source_code:_plot_downsize_image.py |
176 | Download_Jupyter_notebook:_plot_downsize_image.ipynb | 176 | Download_Jupyter_notebook:_plot_downsize_image.ipynb |
177 | Gallery_generated_by_Sphinx-Gallery | 177 | Gallery_generated_by_Sphinx-Gallery |
178 | Next·Previous | 178 | Next·Previous |
179 | =============================================================================== | 179 | =============================================================================== |
180 | ©·Copyright·2008-2020,·Darcy·Mason·and·pydicom·contributors. | 180 | ©·Copyright·2008-2020,·Darcy·Mason·and·pydicom·contributors. |
181 | Built·with·Sphinx·using·a·theme·provided·by·Read_the_Docs. | 181 | Built·with·Sphinx·using·a·theme·provided·by·Read_the_Docs. |
Offset 181, 24 lines modified | Offset 181, 24 lines modified | ||
181 | ··<hr/> | 181 | ··<hr/> |
182 | </div> | 182 | </div> |
183 | ··········<div·role="main"·class="document"·itemscope="itemscope"·itemtype="http://schema.org/Article"> | 183 | ··········<div·role="main"·class="document"·itemscope="itemscope"·itemtype="http://schema.org/Article"> |
184 | ···········<div·itemprop="articleBody"> | 184 | ···········<div·itemprop="articleBody"> |
185 | ············ | 185 | ············ |
186 | ··<div·class="section"·id="computation-times"> | 186 | ··<div·class="section"·id="computation-times"> |
187 | <span·id="sphx-glr-auto-examples-image-processing-sg-execution-times"></span><h1>Computation·times<a·class="headerlink"·href="#computation-times"·title="Permalink·to·this·headline">¶</a></h1> | 187 | <span·id="sphx-glr-auto-examples-image-processing-sg-execution-times"></span><h1>Computation·times<a·class="headerlink"·href="#computation-times"·title="Permalink·to·this·headline">¶</a></h1> |
188 | <p><strong>00:00.01 | 188 | <p><strong>00:00.012</strong>·total·execution·time·for·<strong>auto_examples_image_processing</strong>·files:</p> |
189 | <table·class="docutils·align-default"> | 189 | <table·class="docutils·align-default"> |
190 | <colgroup> | 190 | <colgroup> |
191 | <col·style="width:·84%"·/> | 191 | <col·style="width:·84%"·/> |
192 | <col·style="width:·9%"·/> | 192 | <col·style="width:·9%"·/> |
193 | <col·style="width:·7%"·/> | 193 | <col·style="width:·7%"·/> |
194 | </colgroup> | 194 | </colgroup> |
195 | <tbody> | 195 | <tbody> |
196 | <tr·class="row-odd"><td><p><a·class="reference·internal"·href="plot_downsize_image.html#sphx-glr-auto-examples-image-processing-plot-downsize-image-py"><span·class="std·std-ref">Downsize·MRI·image·using·pydicom</span></a>·(<code·class="docutils·literal·notranslate"><span·class="pre">plot_downsize_image.py</span></code>)</p></td> | 196 | <tr·class="row-odd"><td><p><a·class="reference·internal"·href="plot_downsize_image.html#sphx-glr-auto-examples-image-processing-plot-downsize-image-py"><span·class="std·std-ref">Downsize·MRI·image·using·pydicom</span></a>·(<code·class="docutils·literal·notranslate"><span·class="pre">plot_downsize_image.py</span></code>)</p></td> |
197 | <td><p>00:00.01 | 197 | <td><p>00:00.012</p></td> |
198 | <td><p>0.0·MB</p></td> | 198 | <td><p>0.0·MB</p></td> |
199 | </tr> | 199 | </tr> |
200 | <tr·class="row-even"><td><p><a·class="reference·internal"·href="reslice.html#sphx-glr-auto-examples-image-processing-reslice-py"><span·class="std·std-ref">Load·CT·slices·and·plot·axial,·sagittal·and·coronal·images</span></a>·(<code·class="docutils·literal·notranslate"><span·class="pre">reslice.py</span></code>)</p></td> | 200 | <tr·class="row-even"><td><p><a·class="reference·internal"·href="reslice.html#sphx-glr-auto-examples-image-processing-reslice-py"><span·class="std·std-ref">Load·CT·slices·and·plot·axial,·sagittal·and·coronal·images</span></a>·(<code·class="docutils·literal·notranslate"><span·class="pre">reslice.py</span></code>)</p></td> |
201 | <td><p>00:00.000</p></td> | 201 | <td><p>00:00.000</p></td> |
202 | <td><p>0.0·MB</p></td> | 202 | <td><p>0.0·MB</p></td> |
203 | </tr> | 203 | </tr> |
204 | </tbody> | 204 | </tbody> |
Offset 320, 15 lines modified | Offset 320, 15 lines modified | ||
320 | <span·class="n">filename</span>·<span·class="o">=</span>·<a·href="../../reference/generated/pydicom.data.get_testdata_files.html#pydicom.data.get_testdata_files"·title="pydicom.data.get_testdata_files"·class="sphx-glr-backref-module-pydicom-data·sphx-glr-backref-type-py-function"><span·class="n">get_testdata_files</span></a><span·class="p">(</span><span·class="s1">'MR_small.dcm'</span><span·class="p">)[</span><span·class="mi">0</span><span·class="p">]</span> | 320 | <span·class="n">filename</span>·<span·class="o">=</span>·<a·href="../../reference/generated/pydicom.data.get_testdata_files.html#pydicom.data.get_testdata_files"·title="pydicom.data.get_testdata_files"·class="sphx-glr-backref-module-pydicom-data·sphx-glr-backref-type-py-function"><span·class="n">get_testdata_files</span></a><span·class="p">(</span><span·class="s1">'MR_small.dcm'</span><span·class="p">)[</span><span·class="mi">0</span><span·class="p">]</span> |
321 | <span·class="n">ds</span>·<span·class="o">=</span>·<span·class="n">pydicom</span><span·class="o">.</span><span·class="n">dcmread</span><span·class="p">(</span><span·class="n">filename</span><span·class="p">)</span> | 321 | <span·class="n">ds</span>·<span·class="o">=</span>·<span·class="n">pydicom</span><span·class="o">.</span><span·class="n">dcmread</span><span·class="p">(</span><span·class="n">filename</span><span·class="p">)</span> |
322 | <span·class="n">myprint</span><span·class="p">(</span><span·class="n">ds</span><span·class="p">)</span> | 322 | <span·class="n">myprint</span><span·class="p">(</span><span·class="n">ds</span><span·class="p">)</span> |
323 | </pre></div> | 323 | </pre></div> |
324 | </div> | 324 | </div> |
325 | <p·class="sphx-glr-timing"><strong>Total·running·time·of·the·script:</strong>·(·0·minutes··0.0 | 325 | <p·class="sphx-glr-timing"><strong>Total·running·time·of·the·script:</strong>·(·0·minutes··0.011·seconds)</p> |
326 | <div·class="sphx-glr-footer·class·sphx-glr-footer-example·docutils·container"·id="sphx-glr-download-auto-examples-input-output-plot-printing-dataset-py"> | 326 | <div·class="sphx-glr-footer·class·sphx-glr-footer-example·docutils·container"·id="sphx-glr-download-auto-examples-input-output-plot-printing-dataset-py"> |
327 | <div·class="sphx-glr-download·sphx-glr-download-python·docutils·container"> | 327 | <div·class="sphx-glr-download·sphx-glr-download-python·docutils·container"> |
328 | <p><a·class="reference·download·internal"·download=""·href="../../_downloads/7d5fde14cbfb9e9d3e3df4c27eff8500/plot_printing_dataset.py"><code·class="xref·download·docutils·literal·notranslate"><span·class="pre">Download</span>·<span·class="pre">Python</span>·<span·class="pre">source</span>·<span·class="pre">code:</span>·<span·class="pre">plot_printing_dataset.py</span></code></a></p> | 328 | <p><a·class="reference·download·internal"·download=""·href="../../_downloads/7d5fde14cbfb9e9d3e3df4c27eff8500/plot_printing_dataset.py"><code·class="xref·download·docutils·literal·notranslate"><span·class="pre">Download</span>·<span·class="pre">Python</span>·<span·class="pre">source</span>·<span·class="pre">code:</span>·<span·class="pre">plot_printing_dataset.py</span></code></a></p> |
329 | </div> | 329 | </div> |
330 | <div·class="sphx-glr-download·sphx-glr-download-jupyter·docutils·container"> | 330 | <div·class="sphx-glr-download·sphx-glr-download-jupyter·docutils·container"> |
331 | <p><a·class="reference·download·internal"·download=""·href="../../_downloads/9fa22b5ea7bc00014f45bd48ae63d3ca/plot_printing_dataset.ipynb"><code·class="xref·download·docutils·literal·notranslate"><span·class="pre">Download</span>·<span·class="pre">Jupyter</span>·<span·class="pre">notebook:</span>·<span·class="pre">plot_printing_dataset.ipynb</span></code></a></p> | 331 | <p><a·class="reference·download·internal"·download=""·href="../../_downloads/9fa22b5ea7bc00014f45bd48ae63d3ca/plot_printing_dataset.ipynb"><code·class="xref·download·docutils·literal·notranslate"><span·class="pre">Download</span>·<span·class="pre">Jupyter</span>·<span·class="pre">notebook:</span>·<span·class="pre">plot_printing_dataset.ipynb</span></code></a></p> |
332 | </div> | 332 | </div> |
Offset 159, 15 lines modified | Offset 159, 15 lines modified | ||
159 | ···················································repr_value)) | 159 | ···················································repr_value)) |
160 | filename·=·get_testdata_files('MR_small.dcm')[0] | 160 | filename·=·get_testdata_files('MR_small.dcm')[0] |
161 | ds·=·pydicom.dcmread(filename) | 161 | ds·=·pydicom.dcmread(filename) |
162 | myprint(ds) | 162 | myprint(ds) |
163 | Total·running·time·of·the·script:·(·0·minutes·0.0 | 163 | Total·running·time·of·the·script:·(·0·minutes·0.011·seconds) |
164 | Download_Python_source_code:_plot_printing_dataset.py | 164 | Download_Python_source_code:_plot_printing_dataset.py |
165 | Download_Jupyter_notebook:_plot_printing_dataset.ipynb | 165 | Download_Jupyter_notebook:_plot_printing_dataset.ipynb |
166 | Gallery_generated_by_Sphinx-Gallery | 166 | Gallery_generated_by_Sphinx-Gallery |
167 | Next·Previous | 167 | Next·Previous |
168 | =============================================================================== | 168 | =============================================================================== |
169 | ©·Copyright·2008-2020,·Darcy·Mason·and·pydicom·contributors. | 169 | ©·Copyright·2008-2020,·Darcy·Mason·and·pydicom·contributors. |
170 | Built·with·Sphinx·using·a·theme·provided·by·Read_the_Docs. | 170 | Built·with·Sphinx·using·a·theme·provided·by·Read_the_Docs. |
Offset 257, 15 lines modified | Offset 257, 15 lines modified | ||
257 | <span·class="nb">print</span><span·class="p">(</span><span·class="s2">"Slice·location...:"</span><span·class="p">,</span>·<span·class="n">dataset</span><span·class="o">.</span><span·class="n">get</span><span·class="p">(</span><span·class="s1">'SliceLocation'</span><span·class="p">,</span>·<span·class="s2">"(missing)"</span><span·class="p">))</span> | 257 | <span·class="nb">print</span><span·class="p">(</span><span·class="s2">"Slice·location...:"</span><span·class="p">,</span>·<span·class="n">dataset</span><span·class="o">.</span><span·class="n">get</span><span·class="p">(</span><span·class="s1">'SliceLocation'</span><span·class="p">,</span>·<span·class="s2">"(missing)"</span><span·class="p">))</span> |
258 | <span·class="c1">#·plot·the·image·using·matplotlib</span> | 258 | <span·class="c1">#·plot·the·image·using·matplotlib</span> |
259 | <span·class="n">plt</span><span·class="o">.</span><span·class="n">imshow</span><span·class="p">(</span><span·class="n">dataset</span><span·class="o">.</span><span·class="n">pixel_array</span><span·class="p">,</span>·<span·class="n">cmap</span><span·class="o">=</span><span·class="n">plt</span><span·class="o">.</span><span·class="n">cm</span><span·class="o">.</span><span·class="n">bone</span><span·class="p">)</span> | 259 | <span·class="n">plt</span><span·class="o">.</span><span·class="n">imshow</span><span·class="p">(</span><span·class="n">dataset</span><span·class="o">.</span><span·class="n">pixel_array</span><span·class="p">,</span>·<span·class="n">cmap</span><span·class="o">=</span><span·class="n">plt</span><span·class="o">.</span><span·class="n">cm</span><span·class="o">.</span><span·class="n">bone</span><span·class="p">)</span> |
260 | <span·class="n">plt</span><span·class="o">.</span><span·class="n">show</span><span·class="p">()</span> | 260 | <span·class="n">plt</span><span·class="o">.</span><span·class="n">show</span><span·class="p">()</span> |
261 | </pre></div> | 261 | </pre></div> |
262 | </div> | 262 | </div> |
263 | <p·class="sphx-glr-timing"><strong>Total·running·time·of·the·script:</strong>·(·0·minutes··0. | 263 | <p·class="sphx-glr-timing"><strong>Total·running·time·of·the·script:</strong>·(·0·minutes··0.188·seconds)</p> |
264 | <div·class="sphx-glr-footer·class·sphx-glr-footer-example·docutils·container"·id="sphx-glr-download-auto-examples-input-output-plot-read-dicom-py"> | 264 | <div·class="sphx-glr-footer·class·sphx-glr-footer-example·docutils·container"·id="sphx-glr-download-auto-examples-input-output-plot-read-dicom-py"> |
265 | <div·class="sphx-glr-download·sphx-glr-download-python·docutils·container"> | 265 | <div·class="sphx-glr-download·sphx-glr-download-python·docutils·container"> |
266 | <p><a·class="reference·download·internal"·download=""·href="../../_downloads/5e2195081f5a423e984744f70649688b/plot_read_dicom.py"><code·class="xref·download·docutils·literal·notranslate"><span·class="pre">Download</span>·<span·class="pre">Python</span>·<span·class="pre">source</span>·<span·class="pre">code:</span>·<span·class="pre">plot_read_dicom.py</span></code></a></p> | 266 | <p><a·class="reference·download·internal"·download=""·href="../../_downloads/5e2195081f5a423e984744f70649688b/plot_read_dicom.py"><code·class="xref·download·docutils·literal·notranslate"><span·class="pre">Download</span>·<span·class="pre">Python</span>·<span·class="pre">source</span>·<span·class="pre">code:</span>·<span·class="pre">plot_read_dicom.py</span></code></a></p> |
267 | </div> | 267 | </div> |
268 | <div·class="sphx-glr-download·sphx-glr-download-jupyter·docutils·container"> | 268 | <div·class="sphx-glr-download·sphx-glr-download-jupyter·docutils·container"> |
269 | <p><a·class="reference·download·internal"·download=""·href="../../_downloads/596a13aa12214abf0489d3740bbada1f/plot_read_dicom.ipynb"><code·class="xref·download·docutils·literal·notranslate"><span·class="pre">Download</span>·<span·class="pre">Jupyter</span>·<span·class="pre">notebook:</span>·<span·class="pre">plot_read_dicom.ipynb</span></code></a></p> | 269 | <p><a·class="reference·download·internal"·download=""·href="../../_downloads/596a13aa12214abf0489d3740bbada1f/plot_read_dicom.ipynb"><code·class="xref·download·docutils·literal·notranslate"><span·class="pre">Download</span>·<span·class="pre">Jupyter</span>·<span·class="pre">notebook:</span>·<span·class="pre">plot_read_dicom.ipynb</span></code></a></p> |
270 | </div> | 270 | </div> |
Offset 96, 15 lines modified | Offset 96, 15 lines modified | ||
96 | #·use·.get()·if·not·sure·the·item·exists,·and·want·a·default·value·if·missing | 96 | #·use·.get()·if·not·sure·the·item·exists,·and·want·a·default·value·if·missing |
97 | print("Slice·location...:",·dataset.get('SliceLocation',·"(missing)")) | 97 | print("Slice·location...:",·dataset.get('SliceLocation',·"(missing)")) |
98 | #·plot·the·image·using·matplotlib | 98 | #·plot·the·image·using·matplotlib |
99 | plt.imshow(dataset.pixel_array,·cmap=plt.cm.bone) | 99 | plt.imshow(dataset.pixel_array,·cmap=plt.cm.bone) |
100 | plt.show() | 100 | plt.show() |
101 | Total·running·time·of·the·script:·(·0·minutes·0. | 101 | Total·running·time·of·the·script:·(·0·minutes·0.188·seconds) |
102 | Download_Python_source_code:_plot_read_dicom.py | 102 | Download_Python_source_code:_plot_read_dicom.py |
103 | Download_Jupyter_notebook:_plot_read_dicom.ipynb | 103 | Download_Jupyter_notebook:_plot_read_dicom.ipynb |
104 | Gallery_generated_by_Sphinx-Gallery | 104 | Gallery_generated_by_Sphinx-Gallery |
105 | Next·Previous | 105 | Next·Previous |
106 | =============================================================================== | 106 | =============================================================================== |
107 | ©·Copyright·2008-2020,·Darcy·Mason·and·pydicom·contributors. | 107 | ©·Copyright·2008-2020,·Darcy·Mason·and·pydicom·contributors. |
108 | Built·with·Sphinx·using·a·theme·provided·by·Read_the_Docs. | 108 | Built·with·Sphinx·using·a·theme·provided·by·Read_the_Docs. |
Offset 393, 15 lines modified | Offset 393, 15 lines modified | ||
393 | ············<span·class="c1">#·Show·the·set·of·all·names,·IDs·found·(should·each·have·one)</span> | 393 | ············<span·class="c1">#·Show·the·set·of·all·names,·IDs·found·(should·each·have·one)</span> |
394 | ············<span·class="nb">print</span><span·class="p">(</span><span·class="s2">"·"</span>·<span·class="o">*</span>·<span·class="mi">12</span>·<span·class="o">+</span>·<span·class="s2">"Patient·Names·in·images..:·</span><span·class="si">{}</span><span·class="s2">"</span><span·class="o">.</span><span·class="n">format</span><span·class="p">(</span> | 394 | ············<span·class="nb">print</span><span·class="p">(</span><span·class="s2">"·"</span>·<span·class="o">*</span>·<span·class="mi">12</span>·<span·class="o">+</span>·<span·class="s2">"Patient·Names·in·images..:·</span><span·class="si">{}</span><span·class="s2">"</span><span·class="o">.</span><span·class="n">format</span><span·class="p">(</span> |
395 | ················<span·class="n">patient_names</span><span·class="p">))</span> | 395 | ················<span·class="n">patient_names</span><span·class="p">))</span> |
396 | ············<span·class="nb">print</span><span·class="p">(</span><span·class="s2">"·"</span>·<span·class="o">*</span>·<span·class="mi">12</span>·<span·class="o">+</span>·<span·class="s2">"Patient·IDs·in·images..:·</span><span·class="si">{}</span><span·class="s2">"</span><span·class="o">.</span><span·class="n">format</span><span·class="p">(</span> | 396 | ············<span·class="nb">print</span><span·class="p">(</span><span·class="s2">"·"</span>·<span·class="o">*</span>·<span·class="mi">12</span>·<span·class="o">+</span>·<span·class="s2">"Patient·IDs·in·images..:·</span><span·class="si">{}</span><span·class="s2">"</span><span·class="o">.</span><span·class="n">format</span><span·class="p">(</span> |
397 | ················<span·class="n">patient_IDs</span><span·class="p">))</span> | 397 | ················<span·class="n">patient_IDs</span><span·class="p">))</span> |
398 | </pre></div> | 398 | </pre></div> |
399 | </div> | 399 | </div> |
400 | <p·class="sphx-glr-timing"><strong>Total·running·time·of·the·script:</strong>·(·0·minutes··0.08 | 400 | <p·class="sphx-glr-timing"><strong>Total·running·time·of·the·script:</strong>·(·0·minutes··0.081·seconds)</p> |
401 | <div·class="sphx-glr-footer·class·sphx-glr-footer-example·docutils·container"·id="sphx-glr-download-auto-examples-input-output-plot-read-dicom-directory-py"> | 401 | <div·class="sphx-glr-footer·class·sphx-glr-footer-example·docutils·container"·id="sphx-glr-download-auto-examples-input-output-plot-read-dicom-directory-py"> |
402 | <div·class="sphx-glr-download·sphx-glr-download-python·docutils·container"> | 402 | <div·class="sphx-glr-download·sphx-glr-download-python·docutils·container"> |
403 | <p><a·class="reference·download·internal"·download=""·href="../../_downloads/33b840573239ff057316729322f32358/plot_read_dicom_directory.py"><code·class="xref·download·docutils·literal·notranslate"><span·class="pre">Download</span>·<span·class="pre">Python</span>·<span·class="pre">source</span>·<span·class="pre">code:</span>·<span·class="pre">plot_read_dicom_directory.py</span></code></a></p> | 403 | <p><a·class="reference·download·internal"·download=""·href="../../_downloads/33b840573239ff057316729322f32358/plot_read_dicom_directory.py"><code·class="xref·download·docutils·literal·notranslate"><span·class="pre">Download</span>·<span·class="pre">Python</span>·<span·class="pre">source</span>·<span·class="pre">code:</span>·<span·class="pre">plot_read_dicom_directory.py</span></code></a></p> |
404 | </div> | 404 | </div> |
405 | <div·class="sphx-glr-download·sphx-glr-download-jupyter·docutils·container"> | 405 | <div·class="sphx-glr-download·sphx-glr-download-jupyter·docutils·container"> |
406 | <p><a·class="reference·download·internal"·download=""·href="../../_downloads/aac78b7419d1af47f86d51ba12974948/plot_read_dicom_directory.ipynb"><code·class="xref·download·docutils·literal·notranslate"><span·class="pre">Download</span>·<span·class="pre">Jupyter</span>·<span·class="pre">notebook:</span>·<span·class="pre">plot_read_dicom_directory.ipynb</span></code></a></p> | 406 | <p><a·class="reference·download·internal"·download=""·href="../../_downloads/aac78b7419d1af47f86d51ba12974948/plot_read_dicom_directory.ipynb"><code·class="xref·download·docutils·literal·notranslate"><span·class="pre">Download</span>·<span·class="pre">Jupyter</span>·<span·class="pre">notebook:</span>·<span·class="pre">plot_read_dicom_directory.ipynb</span></code></a></p> |
407 | </div> | 407 | </div> |
Offset 263, 15 lines modified | Offset 263, 15 lines modified | ||
263 | ············#·Expect·all·images·to·have·same·patient·name,·id | 263 | ············#·Expect·all·images·to·have·same·patient·name,·id |
264 | ············#·Show·the·set·of·all·names,·IDs·found·(should·each·have·one) | 264 | ············#·Show·the·set·of·all·names,·IDs·found·(should·each·have·one) |
265 | ············print("·"·*·12·+·"Patient·Names·in·images..:·{}".format( | 265 | ············print("·"·*·12·+·"Patient·Names·in·images..:·{}".format( |
266 | ················patient_names)) | 266 | ················patient_names)) |
267 | ············print("·"·*·12·+·"Patient·IDs·in·images..:·{}".format( | 267 | ············print("·"·*·12·+·"Patient·IDs·in·images..:·{}".format( |
268 | ················patient_IDs)) | 268 | ················patient_IDs)) |
269 | Total·running·time·of·the·script:·(·0·minutes·0.08 | 269 | Total·running·time·of·the·script:·(·0·minutes·0.081·seconds) |
270 | Download_Python_source_code:_plot_read_dicom_directory.py | 270 | Download_Python_source_code:_plot_read_dicom_directory.py |
271 | Download_Jupyter_notebook:_plot_read_dicom_directory.ipynb | 271 | Download_Jupyter_notebook:_plot_read_dicom_directory.ipynb |
272 | Gallery_generated_by_Sphinx-Gallery | 272 | Gallery_generated_by_Sphinx-Gallery |
273 | Next·Previous | 273 | Next·Previous |
274 | =============================================================================== | 274 | =============================================================================== |
275 | ©·Copyright·2008-2020,·Darcy·Mason·and·pydicom·contributors. | 275 | ©·Copyright·2008-2020,·Darcy·Mason·and·pydicom·contributors. |
276 | Built·with·Sphinx·using·a·theme·provided·by·Read_the_Docs. | 276 | Built·with·Sphinx·using·a·theme·provided·by·Read_the_Docs. |
Offset 203, 40 lines modified | Offset 203, 40 lines modified | ||
203 | <span·id="sphx-glr-auto-examples-input-output-plot-write-dicom-py"></span><h1>Write·DICOM·data<a·class="headerlink"·href="#write-dicom-data"·title="Permalink·to·this·headline">¶</a></h1> | 203 | <span·id="sphx-glr-auto-examples-input-output-plot-write-dicom-py"></span><h1>Write·DICOM·data<a·class="headerlink"·href="#write-dicom-data"·title="Permalink·to·this·headline">¶</a></h1> |
204 | <p>This·example·shows·how·to·write·a·DICOM·file·from·scratch·using·pydicom.·This | 204 | <p>This·example·shows·how·to·write·a·DICOM·file·from·scratch·using·pydicom.·This |
205 | example·does·not·produce·a·DICOM·standards·compliant·file·as·written,·you·will | 205 | example·does·not·produce·a·DICOM·standards·compliant·file·as·written,·you·will |
206 | have·to·change·UIDs·to·valid·values·and·add·all·required·DICOM·data·elements.</p> | 206 | have·to·change·UIDs·to·valid·values·and·add·all·required·DICOM·data·elements.</p> |
207 | <p·class="sphx-glr-script-out">Out:</p> | 207 | <p·class="sphx-glr-script-out">Out:</p> |
208 | <div·class="sphx-glr-script-out·highlight-none·notranslate"><div·class="highlight"><pre><span></span>Setting·file·meta·information... | 208 | <div·class="sphx-glr-script-out·highlight-none·notranslate"><div·class="highlight"><pre><span></span>Setting·file·meta·information... |
209 | Setting·dataset·values... | 209 | Setting·dataset·values... |
210 | Writing·test·file·/tmp/tmp | 210 | Writing·test·file·/tmp/tmpq_794qsj.dcm |
211 | File·saved. | 211 | File·saved. |
212 | Writing·test·file·as·Big·Endian·Explicit·VR·/tmp/tmp | 212 | Writing·test·file·as·Big·Endian·Explicit·VR·/tmp/tmph8h_9vdd.dcm |
213 | Load·file·/tmp/tmp | 213 | Load·file·/tmp/tmpq_794qsj.dcm·... |
214 | Dataset.file_meta·------------------------------- | 214 | Dataset.file_meta·------------------------------- |
215 | (0002,·0002)·Media·Storage·SOP·Class·UID·········UI:·CT·Image·Storage | 215 | (0002,·0002)·Media·Storage·SOP·Class·UID·········UI:·CT·Image·Storage |
216 | (0002,·0003)·Media·Storage·SOP·Instance·UID······UI:·1.2.3 | 216 | (0002,·0003)·Media·Storage·SOP·Instance·UID······UI:·1.2.3 |
217 | (0002,·0012)·Implementation·Class·UID············UI:·1.2.3.4 | 217 | (0002,·0012)·Implementation·Class·UID············UI:·1.2.3.4 |
218 | ------------------------------------------------- | 218 | ------------------------------------------------- |
219 | (0008,·0023)·Content·Date························DA:·'202 | 219 | (0008,·0023)·Content·Date························DA:·'20250209' |
220 | (0008,·0033)·Content·Time························TM:·' | 220 | (0008,·0033)·Content·Time························TM:·'170239.922679' |
221 | (0010,·0010)·Patient's·Name······················PN:·'Test^Firstname' | 221 | (0010,·0010)·Patient's·Name······················PN:·'Test^Firstname' |
222 | (0010,·0020)·Patient·ID··························LO:·'123456' | 222 | (0010,·0020)·Patient·ID··························LO:·'123456' |
223 | Remove·file·/tmp/tmp | 223 | Remove·file·/tmp/tmpq_794qsj.dcm·... |
224 | Load·file·/tmp/tmp | 224 | Load·file·/tmp/tmph8h_9vdd.dcm·... |
225 | Dataset.file_meta·------------------------------- | 225 | Dataset.file_meta·------------------------------- |
226 | (0002,·0002)·Media·Storage·SOP·Class·UID·········UI:·CT·Image·Storage | 226 | (0002,·0002)·Media·Storage·SOP·Class·UID·········UI:·CT·Image·Storage |
227 | (0002,·0003)·Media·Storage·SOP·Instance·UID······UI:·1.2.3 | 227 | (0002,·0003)·Media·Storage·SOP·Instance·UID······UI:·1.2.3 |
228 | (0002,·0010)·Transfer·Syntax·UID·················UI:·Explicit·VR·Big·Endian | 228 | (0002,·0010)·Transfer·Syntax·UID·················UI:·Explicit·VR·Big·Endian |
229 | (0002,·0012)·Implementation·Class·UID············UI:·1.2.3.4 | 229 | (0002,·0012)·Implementation·Class·UID············UI:·1.2.3.4 |
230 | ------------------------------------------------- | 230 | ------------------------------------------------- |
231 | (0008,·0023)·Content·Date························DA:·'202 | 231 | (0008,·0023)·Content·Date························DA:·'20250209' |
232 | (0008,·0033)·Content·Time························TM:·' | 232 | (0008,·0033)·Content·Time························TM:·'170239.922679' |
233 | (0010,·0010)·Patient's·Name······················PN:·'Test^Firstname' | 233 | (0010,·0010)·Patient's·Name······················PN:·'Test^Firstname' |
234 | (0010,·0020)·Patient·ID··························LO:·'123456' | 234 | (0010,·0020)·Patient·ID··························LO:·'123456' |
235 | Remove·file·/tmp/tmp | 235 | Remove·file·/tmp/tmph8h_9vdd.dcm·... |
236 | </pre></div> | 236 | </pre></div> |
237 | </div> | 237 | </div> |
238 | <div·class="line-block"> | 238 | <div·class="line-block"> |
239 | <div·class="line"><br·/></div> | 239 | <div·class="line"><br·/></div> |
240 | </div> | 240 | </div> |
241 | <div·class="highlight-default·notranslate"><div·class="highlight"><pre><span></span><span·class="c1">#·authors·:·Guillaume·Lemaitre·<g.lemaitre58@gmail.com></span> | 241 | <div·class="highlight-default·notranslate"><div·class="highlight"><pre><span></span><span·class="c1">#·authors·:·Guillaume·Lemaitre·<g.lemaitre58@gmail.com></span> |
242 | <span·class="c1">#·license·:·MIT</span> | 242 | <span·class="c1">#·license·:·MIT</span> |
Offset 47, 40 lines modified | Offset 47, 40 lines modified | ||
47 | ******·Write·DICOM·data¶·****** | 47 | ******·Write·DICOM·data¶·****** |
48 | This·example·shows·how·to·write·a·DICOM·file·from·scratch·using·pydicom.·This | 48 | This·example·shows·how·to·write·a·DICOM·file·from·scratch·using·pydicom.·This |
49 | example·does·not·produce·a·DICOM·standards·compliant·file·as·written,·you·will | 49 | example·does·not·produce·a·DICOM·standards·compliant·file·as·written,·you·will |
50 | have·to·change·UIDs·to·valid·values·and·add·all·required·DICOM·data·elements. | 50 | have·to·change·UIDs·to·valid·values·and·add·all·required·DICOM·data·elements. |
51 | Out: | 51 | Out: |
52 | Setting·file·meta·information... | 52 | Setting·file·meta·information... |
53 | Setting·dataset·values... | 53 | Setting·dataset·values... |
54 | Writing·test·file·/tmp/tmp | 54 | Writing·test·file·/tmp/tmpq_794qsj.dcm |
55 | File·saved. | 55 | File·saved. |
56 | Writing·test·file·as·Big·Endian·Explicit·VR·/tmp/tmp | 56 | Writing·test·file·as·Big·Endian·Explicit·VR·/tmp/tmph8h_9vdd.dcm |
57 | Load·file·/tmp/tmp | 57 | Load·file·/tmp/tmpq_794qsj.dcm·... |
58 | Dataset.file_meta·------------------------------- | 58 | Dataset.file_meta·------------------------------- |
59 | (0002,·0002)·Media·Storage·SOP·Class·UID·········UI:·CT·Image·Storage | 59 | (0002,·0002)·Media·Storage·SOP·Class·UID·········UI:·CT·Image·Storage |
60 | (0002,·0003)·Media·Storage·SOP·Instance·UID······UI:·1.2.3 | 60 | (0002,·0003)·Media·Storage·SOP·Instance·UID······UI:·1.2.3 |
61 | (0002,·0012)·Implementation·Class·UID············UI:·1.2.3.4 | 61 | (0002,·0012)·Implementation·Class·UID············UI:·1.2.3.4 |
62 | ------------------------------------------------- | 62 | ------------------------------------------------- |
63 | (0008,·0023)·Content·Date························DA:·'202 | 63 | (0008,·0023)·Content·Date························DA:·'20250209' |
64 | (0008,·0033)·Content·Time························TM:·' | 64 | (0008,·0033)·Content·Time························TM:·'170239.922679' |
65 | (0010,·0010)·Patient's·Name······················PN:·'Test^Firstname' | 65 | (0010,·0010)·Patient's·Name······················PN:·'Test^Firstname' |
66 | (0010,·0020)·Patient·ID··························LO:·'123456' | 66 | (0010,·0020)·Patient·ID··························LO:·'123456' |
67 | Remove·file·/tmp/tmp | 67 | Remove·file·/tmp/tmpq_794qsj.dcm·... |
68 | Load·file·/tmp/tmp | 68 | Load·file·/tmp/tmph8h_9vdd.dcm·... |
69 | Dataset.file_meta·------------------------------- | 69 | Dataset.file_meta·------------------------------- |
70 | (0002,·0002)·Media·Storage·SOP·Class·UID·········UI:·CT·Image·Storage | 70 | (0002,·0002)·Media·Storage·SOP·Class·UID·········UI:·CT·Image·Storage |
71 | (0002,·0003)·Media·Storage·SOP·Instance·UID······UI:·1.2.3 | 71 | (0002,·0003)·Media·Storage·SOP·Instance·UID······UI:·1.2.3 |
72 | (0002,·0010)·Transfer·Syntax·UID·················UI:·Explicit·VR·Big·Endian | 72 | (0002,·0010)·Transfer·Syntax·UID·················UI:·Explicit·VR·Big·Endian |
73 | (0002,·0012)·Implementation·Class·UID············UI:·1.2.3.4 | 73 | (0002,·0012)·Implementation·Class·UID············UI:·1.2.3.4 |
74 | ------------------------------------------------- | 74 | ------------------------------------------------- |
75 | (0008,·0023)·Content·Date························DA:·'202 | 75 | (0008,·0023)·Content·Date························DA:·'20250209' |
76 | (0008,·0033)·Content·Time························TM:·' | 76 | (0008,·0033)·Content·Time························TM:·'170239.922679' |
77 | (0010,·0010)·Patient's·Name······················PN:·'Test^Firstname' | 77 | (0010,·0010)·Patient's·Name······················PN:·'Test^Firstname' |
78 | (0010,·0020)·Patient·ID··························LO:·'123456' | 78 | (0010,·0020)·Patient·ID··························LO:·'123456' |
79 | Remove·file·/tmp/tmp | 79 | Remove·file·/tmp/tmph8h_9vdd.dcm·... |
80 | #·authors·:·Guillaume·Lemaitre·<g.lemaitre58@gmail.com> | 80 | #·authors·:·Guillaume·Lemaitre·<g.lemaitre58@gmail.com> |
81 | #·license·:·MIT | 81 | #·license·:·MIT |
82 | import·os | 82 | import·os |
83 | import·tempfile | 83 | import·tempfile |
84 | import·datetime | 84 | import·datetime |
Offset 181, 32 lines modified | Offset 181, 32 lines modified | ||
181 | ··<hr/> | 181 | ··<hr/> |
182 | </div> | 182 | </div> |
183 | ··········<div·role="main"·class="document"·itemscope="itemscope"·itemtype="http://schema.org/Article"> | 183 | ··········<div·role="main"·class="document"·itemscope="itemscope"·itemtype="http://schema.org/Article"> |
184 | ···········<div·itemprop="articleBody"> | 184 | ···········<div·itemprop="articleBody"> |
185 | ············ | 185 | ············ |
186 | ··<div·class="section"·id="computation-times"> | 186 | ··<div·class="section"·id="computation-times"> |
187 | <span·id="sphx-glr-auto-examples-input-output-sg-execution-times"></span><h1>Computation·times<a·class="headerlink"·href="#computation-times"·title="Permalink·to·this·headline">¶</a></h1> | 187 | <span·id="sphx-glr-auto-examples-input-output-sg-execution-times"></span><h1>Computation·times<a·class="headerlink"·href="#computation-times"·title="Permalink·to·this·headline">¶</a></h1> |
188 | <p><strong>00:00. | 188 | <p><strong>00:00.293</strong>·total·execution·time·for·<strong>auto_examples_input_output</strong>·files:</p> |
189 | <table·class="docutils·align-default"> | 189 | <table·class="docutils·align-default"> |
190 | <colgroup> | 190 | <colgroup> |
191 | <col·style="width:·85%"·/> | 191 | <col·style="width:·85%"·/> |
192 | <col·style="width:·9%"·/> | 192 | <col·style="width:·9%"·/> |
193 | <col·style="width:·6%"·/> | 193 | <col·style="width:·6%"·/> |
194 | </colgroup> | 194 | </colgroup> |
195 | <tbody> | 195 | <tbody> |
196 | <tr·class="row-odd"><td><p><a·class="reference·internal"·href="plot_read_dicom.html#sphx-glr-auto-examples-input-output-plot-read-dicom-py"><span·class="std·std-ref">Read·DICOM·and·ploting·using·matplotlib</span></a>·(<code·class="docutils·literal·notranslate"><span·class="pre">plot_read_dicom.py</span></code>)</p></td> | 196 | <tr·class="row-odd"><td><p><a·class="reference·internal"·href="plot_read_dicom.html#sphx-glr-auto-examples-input-output-plot-read-dicom-py"><span·class="std·std-ref">Read·DICOM·and·ploting·using·matplotlib</span></a>·(<code·class="docutils·literal·notranslate"><span·class="pre">plot_read_dicom.py</span></code>)</p></td> |
197 | <td><p>00:00. | 197 | <td><p>00:00.188</p></td> |
198 | <td><p>0.0·MB</p></td> | 198 | <td><p>0.0·MB</p></td> |
199 | </tr> | 199 | </tr> |
200 | <tr·class="row-even"><td><p><a·class="reference·internal"·href="plot_read_dicom_directory.html#sphx-glr-auto-examples-input-output-plot-read-dicom-directory-py"><span·class="std·std-ref">Read·DICOM·directory</span></a>·(<code·class="docutils·literal·notranslate"><span·class="pre">plot_read_dicom_directory.py</span></code>)</p></td> | 200 | <tr·class="row-even"><td><p><a·class="reference·internal"·href="plot_read_dicom_directory.html#sphx-glr-auto-examples-input-output-plot-read-dicom-directory-py"><span·class="std·std-ref">Read·DICOM·directory</span></a>·(<code·class="docutils·literal·notranslate"><span·class="pre">plot_read_dicom_directory.py</span></code>)</p></td> |
201 | <td><p>00:00.08 | 201 | <td><p>00:00.081</p></td> |
202 | <td><p>0.0·MB</p></td> | 202 | <td><p>0.0·MB</p></td> |
203 | </tr> | 203 | </tr> |
204 | <tr·class="row-odd"><td><p><a·class="reference·internal"·href="plot_printing_dataset.html#sphx-glr-auto-examples-input-output-plot-printing-dataset-py"><span·class="std·std-ref">Format·the·output·of·the·data·set·printing</span></a>·(<code·class="docutils·literal·notranslate"><span·class="pre">plot_printing_dataset.py</span></code>)</p></td> | 204 | <tr·class="row-odd"><td><p><a·class="reference·internal"·href="plot_printing_dataset.html#sphx-glr-auto-examples-input-output-plot-printing-dataset-py"><span·class="std·std-ref">Format·the·output·of·the·data·set·printing</span></a>·(<code·class="docutils·literal·notranslate"><span·class="pre">plot_printing_dataset.py</span></code>)</p></td> |
205 | <td><p>00:00.0 | 205 | <td><p>00:00.011</p></td> |
206 | <td><p>0.0·MB</p></td> | 206 | <td><p>0.0·MB</p></td> |
207 | </tr> | 207 | </tr> |
208 | <tr·class="row-even"><td><p><a·class="reference·internal"·href="plot_write_dicom.html#sphx-glr-auto-examples-input-output-plot-write-dicom-py"><span·class="std·std-ref">Write·DICOM·data</span></a>·(<code·class="docutils·literal·notranslate"><span·class="pre">plot_write_dicom.py</span></code>)</p></td> | 208 | <tr·class="row-even"><td><p><a·class="reference·internal"·href="plot_write_dicom.html#sphx-glr-auto-examples-input-output-plot-write-dicom-py"><span·class="std·std-ref">Write·DICOM·data</span></a>·(<code·class="docutils·literal·notranslate"><span·class="pre">plot_write_dicom.py</span></code>)</p></td> |
209 | <td><p>00:00.008</p></td> | 209 | <td><p>00:00.008</p></td> |
210 | <td><p>0.0·MB</p></td> | 210 | <td><p>0.0·MB</p></td> |
211 | </tr> | 211 | </tr> |
212 | <tr·class="row-odd"><td><p><a·class="reference·internal"·href="plot_read_rtplan.html#sphx-glr-auto-examples-input-output-plot-read-rtplan-py"><span·class="std·std-ref">Read·RTPLAN·DICOM·and·list·information</span></a>·(<code·class="docutils·literal·notranslate"><span·class="pre">plot_read_rtplan.py</span></code>)</p></td> | 212 | <tr·class="row-odd"><td><p><a·class="reference·internal"·href="plot_read_rtplan.html#sphx-glr-auto-examples-input-output-plot-read-rtplan-py"><span·class="std·std-ref">Read·RTPLAN·DICOM·and·list·information</span></a>·(<code·class="docutils·literal·notranslate"><span·class="pre">plot_read_rtplan.py</span></code>)</p></td> |
Offset 31, 18 lines modified | Offset 31, 18 lines modified | ||
31 | ····*·Frequently_asked_questions | 31 | ····*·Frequently_asked_questions |
32 | ····*·Release_notes | 32 | ····*·Release_notes |
33 | ····pydicom | 33 | ····pydicom |
34 | ····*··» | 34 | ····*··» |
35 | ····*·Computation·times | 35 | ····*·Computation·times |
36 | =============================================================================== | 36 | =============================================================================== |
37 | ******·Computation·times¶·****** | 37 | ******·Computation·times¶·****** |
38 | 00:00. | 38 | 00:00.293·total·execution·time·for·auto_examples_input_output·files: |
39 | Read_DICOM_and_ploting_using_matplotlib·(plot_read_dicom.py)·00:00. | 39 | Read_DICOM_and_ploting_using_matplotlib·(plot_read_dicom.py)·00:00.188·0.0·MB |
40 | Read_DICOM_directory·(plot_read_dicom_directory.py)··········00:00.08 | 40 | Read_DICOM_directory·(plot_read_dicom_directory.py)··········00:00.081·0.0·MB |
41 | Format_the_output_of_the_data_set_printing···················00:00.0 | 41 | Format_the_output_of_the_data_set_printing···················00:00.011·0.0·MB |
42 | (plot_printing_dataset.py) | 42 | (plot_printing_dataset.py) |
43 | Write_DICOM_data·(plot_write_dicom.py)·······················00:00.008·0.0·MB | 43 | Write_DICOM_data·(plot_write_dicom.py)·······················00:00.008·0.0·MB |
44 | Read_RTPLAN_DICOM_and_list_information·(plot_read_rtplan.py)·00:00.006·0.0·MB | 44 | Read_RTPLAN_DICOM_and_list_information·(plot_read_rtplan.py)·00:00.006·0.0·MB |
45 | =============================================================================== | 45 | =============================================================================== |
46 | ©·Copyright·2008-2020,·Darcy·Mason·and·pydicom·contributors. | 46 | ©·Copyright·2008-2020,·Darcy·Mason·and·pydicom·contributors. |
47 | Built·with·Sphinx·using·a·theme·provided·by·Read_the_Docs. | 47 | Built·with·Sphinx·using·a·theme·provided·by·Read_the_Docs. |
Offset 284, 15 lines modified | Offset 284, 15 lines modified | ||
284 | </pre></div> | 284 | </pre></div> |
285 | </div> | 285 | </div> |
286 | <p·class="sphx-glr-script-out">Out:</p> | 286 | <p·class="sphx-glr-script-out">Out:</p> |
287 | <div·class="sphx-glr-script-out·highlight-none·notranslate"><div·class="highlight"><pre><span></span>(0010,·0020)·Patient·ID··························LO:·'id' | 287 | <div·class="sphx-glr-script-out·highlight-none·notranslate"><div·class="highlight"><pre><span></span>(0010,·0020)·Patient·ID··························LO:·'id' |
288 | (0010,·0030)·Patient's·Birth·Date················DA:·'19000101' | 288 | (0010,·0030)·Patient's·Birth·Date················DA:·'19000101' |
289 | </pre></div> | 289 | </pre></div> |
290 | </div> | 290 | </div> |
291 | <p·class="sphx-glr-timing"><strong>Total·running·time·of·the·script:</strong>·(·0·minutes··0.01 | 291 | <p·class="sphx-glr-timing"><strong>Total·running·time·of·the·script:</strong>·(·0·minutes··0.015·seconds)</p> |
292 | <div·class="sphx-glr-footer·class·sphx-glr-footer-example·docutils·container"·id="sphx-glr-download-auto-examples-metadata-processing-plot-anonymize-py"> | 292 | <div·class="sphx-glr-footer·class·sphx-glr-footer-example·docutils·container"·id="sphx-glr-download-auto-examples-metadata-processing-plot-anonymize-py"> |
293 | <div·class="sphx-glr-download·sphx-glr-download-python·docutils·container"> | 293 | <div·class="sphx-glr-download·sphx-glr-download-python·docutils·container"> |
294 | <p><a·class="reference·download·internal"·download=""·href="../../_downloads/cdbc1bcbae90b5ff13fdc9b19581006e/plot_anonymize.py"><code·class="xref·download·docutils·literal·notranslate"><span·class="pre">Download</span>·<span·class="pre">Python</span>·<span·class="pre">source</span>·<span·class="pre">code:</span>·<span·class="pre">plot_anonymize.py</span></code></a></p> | 294 | <p><a·class="reference·download·internal"·download=""·href="../../_downloads/cdbc1bcbae90b5ff13fdc9b19581006e/plot_anonymize.py"><code·class="xref·download·docutils·literal·notranslate"><span·class="pre">Download</span>·<span·class="pre">Python</span>·<span·class="pre">source</span>·<span·class="pre">code:</span>·<span·class="pre">plot_anonymize.py</span></code></a></p> |
295 | </div> | 295 | </div> |
296 | <div·class="sphx-glr-download·sphx-glr-download-jupyter·docutils·container"> | 296 | <div·class="sphx-glr-download·sphx-glr-download-jupyter·docutils·container"> |
297 | <p><a·class="reference·download·internal"·download=""·href="../../_downloads/de1da3fdb216bd623a5999980785f16d/plot_anonymize.ipynb"><code·class="xref·download·docutils·literal·notranslate"><span·class="pre">Download</span>·<span·class="pre">Jupyter</span>·<span·class="pre">notebook:</span>·<span·class="pre">plot_anonymize.ipynb</span></code></a></p> | 297 | <p><a·class="reference·download·internal"·download=""·href="../../_downloads/de1da3fdb216bd623a5999980785f16d/plot_anonymize.ipynb"><code·class="xref·download·docutils·literal·notranslate"><span·class="pre">Download</span>·<span·class="pre">Jupyter</span>·<span·class="pre">notebook:</span>·<span·class="pre">plot_anonymize.ipynb</span></code></a></p> |
298 | </div> | 298 | </div> |
Offset 104, 15 lines modified | Offset 104, 15 lines modified | ||
104 | ····print(dataset.data_element(de)) | 104 | ····print(dataset.data_element(de)) |
105 | output_filename·=·tempfile.NamedTemporaryFile().name | 105 | output_filename·=·tempfile.NamedTemporaryFile().name |
106 | dataset.save_as(output_filename) | 106 | dataset.save_as(output_filename) |
107 | Out: | 107 | Out: |
108 | (0010,·0020)·Patient·ID··························LO:·'id' | 108 | (0010,·0020)·Patient·ID··························LO:·'id' |
109 | (0010,·0030)·Patient's·Birth·Date················DA:·'19000101' | 109 | (0010,·0030)·Patient's·Birth·Date················DA:·'19000101' |
110 | Total·running·time·of·the·script:·(·0·minutes·0.01 | 110 | Total·running·time·of·the·script:·(·0·minutes·0.015·seconds) |
111 | Download_Python_source_code:_plot_anonymize.py | 111 | Download_Python_source_code:_plot_anonymize.py |
112 | Download_Jupyter_notebook:_plot_anonymize.ipynb | 112 | Download_Jupyter_notebook:_plot_anonymize.ipynb |
113 | Gallery_generated_by_Sphinx-Gallery | 113 | Gallery_generated_by_Sphinx-Gallery |
114 | Next·Previous | 114 | Next·Previous |
115 | =============================================================================== | 115 | =============================================================================== |
116 | ©·Copyright·2008-2020,·Darcy·Mason·and·pydicom·contributors. | 116 | ©·Copyright·2008-2020,·Darcy·Mason·and·pydicom·contributors. |
117 | Built·with·Sphinx·using·a·theme·provided·by·Read_the_Docs. | 117 | Built·with·Sphinx·using·a·theme·provided·by·Read_the_Docs. |
Offset 181, 24 lines modified | Offset 181, 24 lines modified | ||
181 | ··<hr/> | 181 | ··<hr/> |
182 | </div> | 182 | </div> |
183 | ··········<div·role="main"·class="document"·itemscope="itemscope"·itemtype="http://schema.org/Article"> | 183 | ··········<div·role="main"·class="document"·itemscope="itemscope"·itemtype="http://schema.org/Article"> |
184 | ···········<div·itemprop="articleBody"> | 184 | ···········<div·itemprop="articleBody"> |
185 | ············ | 185 | ············ |
186 | ··<div·class="section"·id="computation-times"> | 186 | ··<div·class="section"·id="computation-times"> |
187 | <span·id="sphx-glr-auto-examples-metadata-processing-sg-execution-times"></span><h1>Computation·times<a·class="headerlink"·href="#computation-times"·title="Permalink·to·this·headline">¶</a></h1> | 187 | <span·id="sphx-glr-auto-examples-metadata-processing-sg-execution-times"></span><h1>Computation·times<a·class="headerlink"·href="#computation-times"·title="Permalink·to·this·headline">¶</a></h1> |
188 | <p><strong>00:00.0 | 188 | <p><strong>00:00.019</strong>·total·execution·time·for·<strong>auto_examples_metadata_processing</strong>·files:</p> |
189 | <table·class="docutils·align-default"> | 189 | <table·class="docutils·align-default"> |
190 | <colgroup> | 190 | <colgroup> |
191 | <col·style="width:·85%"·/> | 191 | <col·style="width:·85%"·/> |
192 | <col·style="width:·9%"·/> | 192 | <col·style="width:·9%"·/> |
193 | <col·style="width:·6%"·/> | 193 | <col·style="width:·6%"·/> |
194 | </colgroup> | 194 | </colgroup> |
195 | <tbody> | 195 | <tbody> |
196 | <tr·class="row-odd"><td><p><a·class="reference·internal"·href="plot_anonymize.html#sphx-glr-auto-examples-metadata-processing-plot-anonymize-py"><span·class="std·std-ref">Anonymize·DICOM·data</span></a>·(<code·class="docutils·literal·notranslate"><span·class="pre">plot_anonymize.py</span></code>)</p></td> | 196 | <tr·class="row-odd"><td><p><a·class="reference·internal"·href="plot_anonymize.html#sphx-glr-auto-examples-metadata-processing-plot-anonymize-py"><span·class="std·std-ref">Anonymize·DICOM·data</span></a>·(<code·class="docutils·literal·notranslate"><span·class="pre">plot_anonymize.py</span></code>)</p></td> |
197 | <td><p>00:00.01 | 197 | <td><p>00:00.015</p></td> |
198 | <td><p>0.0·MB</p></td> | 198 | <td><p>0.0·MB</p></td> |
199 | </tr> | 199 | </tr> |
200 | <tr·class="row-even"><td><p><a·class="reference·internal"·href="plot_add_dict_entries.html#sphx-glr-auto-examples-metadata-processing-plot-add-dict-entries-py"><span·class="std·std-ref">Add·dictionary·items·in·the·standard·DICOM·dictionary</span></a>·(<code·class="docutils·literal·notranslate"><span·class="pre">plot_add_dict_entries.py</span></code>)</p></td> | 200 | <tr·class="row-even"><td><p><a·class="reference·internal"·href="plot_add_dict_entries.html#sphx-glr-auto-examples-metadata-processing-plot-add-dict-entries-py"><span·class="std·std-ref">Add·dictionary·items·in·the·standard·DICOM·dictionary</span></a>·(<code·class="docutils·literal·notranslate"><span·class="pre">plot_add_dict_entries.py</span></code>)</p></td> |
201 | <td><p>00:00.002</p></td> | 201 | <td><p>00:00.002</p></td> |
202 | <td><p>0.0·MB</p></td> | 202 | <td><p>0.0·MB</p></td> |
203 | </tr> | 203 | </tr> |
204 | <tr·class="row-odd"><td><p><a·class="reference·internal"·href="plot_sequences.html#sphx-glr-auto-examples-metadata-processing-plot-sequences-py"><span·class="std·std-ref">Working·with·sequences</span></a>·(<code·class="docutils·literal·notranslate"><span·class="pre">plot_sequences.py</span></code>)</p></td> | 204 | <tr·class="row-odd"><td><p><a·class="reference·internal"·href="plot_sequences.html#sphx-glr-auto-examples-metadata-processing-plot-sequences-py"><span·class="std·std-ref">Working·with·sequences</span></a>·(<code·class="docutils·literal·notranslate"><span·class="pre">plot_sequences.py</span></code>)</p></td> |
Offset 904, 15 lines modified | Offset 904, 15 lines modified | ||
904 | <span·class="n">diff</span>·<span·class="o">=</span>·<span·class="n">difflib</span><span·class="o">.</span><span·class="n">Differ</span><span·class="p">()</span> | 904 | <span·class="n">diff</span>·<span·class="o">=</span>·<span·class="n">difflib</span><span·class="o">.</span><span·class="n">Differ</span><span·class="p">()</span> |
905 | <span·class="k">for</span>·<span·class="n">line</span>·<span·class="ow">in</span>·<span·class="n">diff</span><span·class="o">.</span><span·class="n">compare</span><span·class="p">(</span><span·class="n">rep</span><span·class="p">[</span><span·class="mi">0</span><span·class="p">],</span>·<span·class="n">rep</span><span·class="p">[</span><span·class="mi">1</span><span·class="p">]):</span> | 905 | <span·class="k">for</span>·<span·class="n">line</span>·<span·class="ow">in</span>·<span·class="n">diff</span><span·class="o">.</span><span·class="n">compare</span><span·class="p">(</span><span·class="n">rep</span><span·class="p">[</span><span·class="mi">0</span><span·class="p">],</span>·<span·class="n">rep</span><span·class="p">[</span><span·class="mi">1</span><span·class="p">]):</span> |
906 | ····<span·class="k">if</span>·<span·class="n">line</span><span·class="p">[</span><span·class="mi">0</span><span·class="p">]</span>·<span·class="o">!=</span>·<span·class="s2">"?"</span><span·class="p">:</span> | 906 | ····<span·class="k">if</span>·<span·class="n">line</span><span·class="p">[</span><span·class="mi">0</span><span·class="p">]</span>·<span·class="o">!=</span>·<span·class="s2">"?"</span><span·class="p">:</span> |
907 | ········<span·class="nb">print</span><span·class="p">(</span><span·class="n">line</span><span·class="p">)</span> | 907 | ········<span·class="nb">print</span><span·class="p">(</span><span·class="n">line</span><span·class="p">)</span> |
908 | </pre></div> | 908 | </pre></div> |
909 | </div> | 909 | </div> |
910 | <p·class="sphx-glr-timing"><strong>Total·running·time·of·the·script:</strong>·(·0·minutes··0. | 910 | <p·class="sphx-glr-timing"><strong>Total·running·time·of·the·script:</strong>·(·0·minutes··0.196·seconds)</p> |
911 | <div·class="sphx-glr-footer·class·sphx-glr-footer-example·docutils·container"·id="sphx-glr-download-auto-examples-plot-dicom-difference-py"> | 911 | <div·class="sphx-glr-footer·class·sphx-glr-footer-example·docutils·container"·id="sphx-glr-download-auto-examples-plot-dicom-difference-py"> |
912 | <div·class="sphx-glr-download·sphx-glr-download-python·docutils·container"> | 912 | <div·class="sphx-glr-download·sphx-glr-download-python·docutils·container"> |
913 | <p><a·class="reference·download·internal"·download=""·href="../_downloads/a3b4852d291f27302d2926716393406e/plot_dicom_difference.py"><code·class="xref·download·docutils·literal·notranslate"><span·class="pre">Download</span>·<span·class="pre">Python</span>·<span·class="pre">source</span>·<span·class="pre">code:</span>·<span·class="pre">plot_dicom_difference.py</span></code></a></p> | 913 | <p><a·class="reference·download·internal"·download=""·href="../_downloads/a3b4852d291f27302d2926716393406e/plot_dicom_difference.py"><code·class="xref·download·docutils·literal·notranslate"><span·class="pre">Download</span>·<span·class="pre">Python</span>·<span·class="pre">source</span>·<span·class="pre">code:</span>·<span·class="pre">plot_dicom_difference.py</span></code></a></p> |
914 | </div> | 914 | </div> |
915 | <div·class="sphx-glr-download·sphx-glr-download-jupyter·docutils·container"> | 915 | <div·class="sphx-glr-download·sphx-glr-download-jupyter·docutils·container"> |
916 | <p><a·class="reference·download·internal"·download=""·href="../_downloads/41ba38a2ae2d88170db68a78dcabe080/plot_dicom_difference.ipynb"><code·class="xref·download·docutils·literal·notranslate"><span·class="pre">Download</span>·<span·class="pre">Jupyter</span>·<span·class="pre">notebook:</span>·<span·class="pre">plot_dicom_difference.ipynb</span></code></a></p> | 916 | <p><a·class="reference·download·internal"·download=""·href="../_downloads/41ba38a2ae2d88170db68a78dcabe080/plot_dicom_difference.ipynb"><code·class="xref·download·docutils·literal·notranslate"><span·class="pre">Download</span>·<span·class="pre">Jupyter</span>·<span·class="pre">notebook:</span>·<span·class="pre">plot_dicom_difference.ipynb</span></code></a></p> |
917 | </div> | 917 | </div> |
Offset 760, 15 lines modified | Offset 760, 15 lines modified | ||
760 | ····rep.append(lines) | 760 | ····rep.append(lines) |
761 | diff·=·difflib.Differ() | 761 | diff·=·difflib.Differ() |
762 | for·line·in·diff.compare(rep[0],·rep[1]): | 762 | for·line·in·diff.compare(rep[0],·rep[1]): |
763 | ····if·line[0]·!=·"?": | 763 | ····if·line[0]·!=·"?": |
764 | ········print(line) | 764 | ········print(line) |
765 | Total·running·time·of·the·script:·(·0·minutes·0. | 765 | Total·running·time·of·the·script:·(·0·minutes·0.196·seconds) |
766 | Download_Python_source_code:_plot_dicom_difference.py | 766 | Download_Python_source_code:_plot_dicom_difference.py |
767 | Download_Jupyter_notebook:_plot_dicom_difference.ipynb | 767 | Download_Jupyter_notebook:_plot_dicom_difference.ipynb |
768 | Gallery_generated_by_Sphinx-Gallery | 768 | Gallery_generated_by_Sphinx-Gallery |
769 | Next·Previous | 769 | Next·Previous |
770 | =============================================================================== | 770 | =============================================================================== |
771 | ©·Copyright·2008-2020,·Darcy·Mason·and·pydicom·contributors. | 771 | ©·Copyright·2008-2020,·Darcy·Mason·and·pydicom·contributors. |
772 | Built·with·Sphinx·using·a·theme·provided·by·Read_the_Docs. | 772 | Built·with·Sphinx·using·a·theme·provided·by·Read_the_Docs. |
Offset 181, 24 lines modified | Offset 181, 24 lines modified | ||
181 | ··<hr/> | 181 | ··<hr/> |
182 | </div> | 182 | </div> |
183 | ··········<div·role="main"·class="document"·itemscope="itemscope"·itemtype="http://schema.org/Article"> | 183 | ··········<div·role="main"·class="document"·itemscope="itemscope"·itemtype="http://schema.org/Article"> |
184 | ···········<div·itemprop="articleBody"> | 184 | ···········<div·itemprop="articleBody"> |
185 | ············ | 185 | ············ |
186 | ··<div·class="section"·id="computation-times"> | 186 | ··<div·class="section"·id="computation-times"> |
187 | <span·id="sphx-glr-auto-examples-sg-execution-times"></span><h1>Computation·times<a·class="headerlink"·href="#computation-times"·title="Permalink·to·this·headline">¶</a></h1> | 187 | <span·id="sphx-glr-auto-examples-sg-execution-times"></span><h1>Computation·times<a·class="headerlink"·href="#computation-times"·title="Permalink·to·this·headline">¶</a></h1> |
188 | <p><strong>00:00. | 188 | <p><strong>00:00.196</strong>·total·execution·time·for·<strong>auto_examples</strong>·files:</p> |
189 | <table·class="docutils·align-default"> | 189 | <table·class="docutils·align-default"> |
190 | <colgroup> | 190 | <colgroup> |
191 | <col·style="width:·82%"·/> | 191 | <col·style="width:·82%"·/> |
192 | <col·style="width:·10%"·/> | 192 | <col·style="width:·10%"·/> |
193 | <col·style="width:·8%"·/> | 193 | <col·style="width:·8%"·/> |
194 | </colgroup> | 194 | </colgroup> |
195 | <tbody> | 195 | <tbody> |
196 | <tr·class="row-odd"><td><p><a·class="reference·internal"·href="plot_dicom_difference.html#sphx-glr-auto-examples-plot-dicom-difference-py"><span·class="std·std-ref">Analyse·differences·between·DICOM·files</span></a>·(<code·class="docutils·literal·notranslate"><span·class="pre">plot_dicom_difference.py</span></code>)</p></td> | 196 | <tr·class="row-odd"><td><p><a·class="reference·internal"·href="plot_dicom_difference.html#sphx-glr-auto-examples-plot-dicom-difference-py"><span·class="std·std-ref">Analyse·differences·between·DICOM·files</span></a>·(<code·class="docutils·literal·notranslate"><span·class="pre">plot_dicom_difference.py</span></code>)</p></td> |
197 | <td><p>00:00. | 197 | <td><p>00:00.196</p></td> |
198 | <td><p>0.0·MB</p></td> | 198 | <td><p>0.0·MB</p></td> |
199 | </tr> | 199 | </tr> |
200 | <tr·class="row-even"><td><p><a·class="reference·internal"·href="dicomtree.html#sphx-glr-auto-examples-dicomtree-py"><span·class="std·std-ref">Show·a·dicom·file·using·hierarchical·tree</span></a>·(<code·class="docutils·literal·notranslate"><span·class="pre">dicomtree.py</span></code>)</p></td> | 200 | <tr·class="row-even"><td><p><a·class="reference·internal"·href="dicomtree.html#sphx-glr-auto-examples-dicomtree-py"><span·class="std·std-ref">Show·a·dicom·file·using·hierarchical·tree</span></a>·(<code·class="docutils·literal·notranslate"><span·class="pre">dicomtree.py</span></code>)</p></td> |
201 | <td><p>00:00.000</p></td> | 201 | <td><p>00:00.000</p></td> |
202 | <td><p>0.0·MB</p></td> | 202 | <td><p>0.0·MB</p></td> |
203 | </tr> | 203 | </tr> |
204 | <tr·class="row-odd"><td><p><a·class="reference·internal"·href="memory_dataset.html#sphx-glr-auto-examples-memory-dataset-py"><span·class="std·std-ref">Show·working·with·memory-based·dataset</span></a>·(<code·class="docutils·literal·notranslate"><span·class="pre">memory_dataset.py</span></code>)</p></td> | 204 | <tr·class="row-odd"><td><p><a·class="reference·internal"·href="memory_dataset.html#sphx-glr-auto-examples-memory-dataset-py"><span·class="std·std-ref">Show·working·with·memory-based·dataset</span></a>·(<code·class="docutils·literal·notranslate"><span·class="pre">memory_dataset.py</span></code>)</p></td> |
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580 | ········"0100":·[1,·16,·26,·156,·166,·169,·171,·172], | 580 | ········"0100":·[1,·16,·26,·156,·166,·169,·171,·172], |
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583 | ········"0103":·[1,·16,·169,·171,·172], | 583 | ········"0103":·[1,·16,·169,·171,·172], |
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862 | ········"167161297070865690102504091919570542144":·199, | 860 | ········"167161297070865690102504091919570542144":·199, |
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880 | ········"185059":·[1,·5,·16], | 879 | ········"185059":·[1,·5,·16], |
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891 | ········"19999694824219":·16, | 892 | ········"19999694824219":·16, |
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906 | ········"20040826185059":·[1,·5,·16], | 907 | ········"20040826185059":·[1,·5,·16], |
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910 | ········"2012":·172, | 910 | ········"2012":·172, |
911 | ········"2017c":·[236,·245], | 911 | ········"2017c":·[236,·245], |
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