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71 <li·class="toctree-l2"><a·class="reference·internal"·href="whatsnew/version0.6.html">Release·notes·for·nitime·version·0.6</a></li>71 <li·class="toctree-l2"><a·class="reference·internal"·href="whatsnew/version0.6.html">Release·notes·for·nitime·version·0.6</a></li>
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75 </ul>75 </ul>
76 </li>76 </li>
77 <li·class="toctree-l1"><a·class="reference·internal"·href="examples/index.html">Examples</a><ul>77 <li·class="toctree-l1"><a·class="reference·internal"·href="examples/index.html">Examples</a><ul>
 78 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/multi_taper_spectral_estimation.html">Multitaper·spectral·estimation</a></li>
78 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/filtering_fmri.html">Filtering·and·normalizing·fMRI·data</a></li>79 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/event_related_fmri.html">Event-related·fMRI</a></li>
 80 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/seed_analysis.html">Seed·correlation/coherence·with·fMRI·data</a></li>
79 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/mtm_baseband_power.html">Multitaper·method·for·baseband·demodulation</a></li>81 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/mtm_baseband_power.html">Multitaper·method·for·baseband·demodulation</a></li>
80 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/granger_fmri.html">Granger·‘causality’·of·fMRI·data</a></li>82 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/granger_fmri.html">Granger·‘causality’·of·fMRI·data</a></li>
 83 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/multi_taper_coh.html">Multitaper·coherence·estimation</a></li>
81 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/ar_est_2vars.html">Multivariate·auto-regressive·modeling</a></li>84 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/ar_est_2vars.html">Multivariate·auto-regressive·modeling</a></li>
82 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/snr_example.html">Calculation·of·signal-to-noise·and·information</a></li> 
83 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/grasshopper.html">Auditory·processing·in·grasshoppers</a></li> 
84 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/event_related_fmri.html">Event-related·fMRI</a></li> 
85 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/ar_model_fit.html">Fitting·an·MAR·model:·analyzer·interface</a></li>85 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/ar_model_fit.html">Fitting·an·MAR·model:·analyzer·interface</a></li>
86 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/resting_state_fmri.html">Coherency·analysis·of·fMRI·data</a></li>86 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/filtering_fmri.html">Filtering·and·normalizing·fMRI·data</a></li>
 87 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/mtm_harmonic_test.html">Multitaper·F-test·for·harmonic·components</a></li>
87 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/ar_est_3vars.html">Multivariate·auto-regressive·modeling·-·3·variables</a></li>88 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/ar_est_3vars.html">Multivariate·auto-regressive·modeling·-·3·variables</a></li>
88 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/multi_taper_coh.html">Multitaper·coherence·estimation</a></li> 
89 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/ar_est_1var.html">Fitting·an·AR·model:·algorithm·module·interface</a></li>89 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/ar_est_1var.html">Fitting·an·AR·model:·algorithm·module·interface</a></li>
90 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/multi_taper_spectral_estimation.html">Multitaper·spectral·estimation</a></li> 
91 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/mtm_harmonic_test.html">Multitaper·F-test·for·harmonic·components</a></li> 
92 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/seed_analysis.html">Seed·correlation/coherence·with·fMRI·data</a></li>90 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/grasshopper.html">Auditory·processing·in·grasshoppers</a></li>
 91 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/snr_example.html">Calculation·of·signal-to-noise·and·information</a></li>
 92 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/resting_state_fmri.html">Coherency·analysis·of·fMRI·data</a></li>
93 </ul>93 </ul>
94 </li>94 </li>
95 <li·class="toctree-l1"><a·class="reference·internal"·href="discussion/index.html">Discussion</a><ul>95 <li·class="toctree-l1"><a·class="reference·internal"·href="discussion/index.html">Discussion</a><ul>
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97 <li·class="toctree-l2"><a·class="reference·internal"·href="discussion/multitaper_jackknife.html">Jack-knifing·a·Multitaper·SDF·estimator</a></li>97 <li·class="toctree-l2"><a·class="reference·internal"·href="discussion/multitaper_jackknife.html">Jack-knifing·a·Multitaper·SDF·estimator</a></li>
98 </ul>98 </ul>
99 </li>99 </li>
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27 ····*·What’s_new_in_Nitime27 ····*·What’s_new_in_Nitime
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29 ··········o·Release_notes_for_nitime_version_0.629 ··········o·Release_notes_for_nitime_version_0.6
30 ··········o·Release_notes_for_nitime_version_0.530 ··········o·Release_notes_for_nitime_version_0.5
31 ··········o·Release_notes_for_nitime_version_0.431 ··········o·Release_notes_for_nitime_version_0.4
32 ··········o·Release_notes_for_nitime_version_0.332 ··········o·Release_notes_for_nitime_version_0.3
33 ····*·Examples33 ····*·Examples
34 ··········o·Filtering_and_normalizing_fMRI_data34 ··········o·Multitaper_spectral_estimation
 35 ··········o·Event-related_fMRI
 36 ··········o·Seed_correlation/coherence_with_fMRI_data
35 ··········o·Multitaper_method_for_baseband_demodulation37 ··········o·Multitaper_method_for_baseband_demodulation
36 ··········o·Granger_‘causality’_of_fMRI_data38 ··········o·Granger_‘causality’_of_fMRI_data
 39 ··········o·Multitaper_coherence_estimation
37 ··········o·Multivariate_auto-regressive_modeling40 ··········o·Multivariate_auto-regressive_modeling
38 ··········o·Calculation_of_signal-to-noise_and_information 
39 ··········o·Auditory_processing_in_grasshoppers 
40 ··········o·Event-related_fMRI 
41 ··········o·Fitting_an_MAR_model:_analyzer_interface41 ··········o·Fitting_an_MAR_model:_analyzer_interface
42 ··········o·Coherency_analysis_of_fMRI_data42 ··········o·Filtering_and_normalizing_fMRI_data
 43 ··········o·Multitaper_F-test_for_harmonic_components
43 ··········o·Multivariate_auto-regressive_modeling_-_3_variables44 ··········o·Multivariate_auto-regressive_modeling_-_3_variables
44 ··········o·Multitaper_coherence_estimation 
45 ··········o·Fitting_an_AR_model:_algorithm_module_interface45 ··········o·Fitting_an_AR_model:_algorithm_module_interface
46 ··········o·Multitaper_spectral_estimation 
47 ··········o·Multitaper_F-test_for_harmonic_components 
48 ··········o·Seed_correlation/coherence_with_fMRI_data46 ··········o·Auditory_processing_in_grasshoppers
 47 ··········o·Calculation_of_signal-to-noise_and_information
 48 ··········o·Coherency_analysis_of_fMRI_data
49 ····*·Discussion49 ····*·Discussion
50 ··········o·A_note_about_the_discussion_section50 ··········o·A_note_about_the_discussion_section
51 ··········o·Jack-knifing_a_Multitaper_SDF_estimator51 ··········o·Jack-knifing_a_Multitaper_SDF_estimator
52 ····*·Working_with_nitime_source_code52 ····*·Working_with_nitime_source_code
53 ··········o·Introduction53 ··········o·Introduction
54 ··········o·Install_git54 ··········o·Install_git
55 ··········o·Following_the_latest_source55 ··········o·Following_the_latest_source
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263 ·············>modules</a>·|</li>263 ·············>modules</a>·|</li>
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273 ········<li·class="nav-item·nav-item-this"><a·href="">Neuroimaging·in·Python</a></li>·273 ········<li·class="nav-item·nav-item-this"><a·href="">Neuroimaging·in·Python</a></li>·
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137 ····*·News137 ····*·News
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144 Calculation_of_signal-to-noise_and_information144 Fitting_an_AR_model:_algorithm_module_interface
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146 Event-related_fMRI146 Calculation_of_signal-to-noise_and_information
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23 <div·style="background-color:·white;·text-align:·left;·padding:·10px·10px·15px·15px">23 <div·style="background-color:·white;·text-align:·left;·padding:·10px·10px·15px·15px">
24 ·<a·href="../index.html">24 ·<a·href="../index.html">
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33 ··········<a·href="../genindex.html"·title="General·Index"33 ··········<a·href="../genindex.html"·title="General·Index"
34 ·············accesskey="I">index</a></li>34 ·············accesskey="I">index</a></li>
35 ········<li·class="right"·>35 ········<li·class="right"·>
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37 ·············>modules</a>·|</li>37 ·············>modules</a>·|</li>
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65 <p>If·you·want·to·replicate·a·particular·analysis·or·visualization,·simply·copy65 <p>If·you·want·to·replicate·a·particular·analysis·or·visualization,·simply·copy
66 the·relevant·“.py”·script·from·the·source·distribution,·or·download·the·script66 the·relevant·“.py”·script·from·the·source·distribution,·or·download·the·script
67 using·the·link·at·the·bottom·of·each·page.</p>67 using·the·link·at·the·bottom·of·each·page.</p>
68 <p>Thanks·to·the·developers·of·<a·class="reference·external"·href="http://www.pymvpa.org">PyMVPA</a>·for·designing·the·software·which·enables·us68 <p>Thanks·to·the·developers·of·<a·class="reference·external"·href="http://www.pymvpa.org">PyMVPA</a>·for·designing·the·software·which·enables·us
69 to·provide·these·documented·examples!</p>69 to·provide·these·documented·examples!</p>
70 <div·class="toctree-wrapper·compound">70 <div·class="toctree-wrapper·compound">
71 <ul>71 <ul>
 72 <li·class="toctree-l1"><a·class="reference·internal"·href="multi_taper_spectral_estimation.html">Multitaper·spectral·estimation</a></li>
72 <li·class="toctree-l1"><a·class="reference·internal"·href="filtering_fmri.html">Filtering·and·normalizing·fMRI·data</a></li>73 <li·class="toctree-l1"><a·class="reference·internal"·href="event_related_fmri.html">Event-related·fMRI</a></li>
 74 <li·class="toctree-l1"><a·class="reference·internal"·href="seed_analysis.html">Seed·correlation/coherence·with·fMRI·data</a></li>
73 <li·class="toctree-l1"><a·class="reference·internal"·href="mtm_baseband_power.html">Multitaper·method·for·baseband·demodulation</a><ul>75 <li·class="toctree-l1"><a·class="reference·internal"·href="mtm_baseband_power.html">Multitaper·method·for·baseband·demodulation</a><ul>
74 <li·class="toctree-l2"><a·class="reference·internal"·href="mtm_baseband_power.html#test-1">Test·1</a></li>76 <li·class="toctree-l2"><a·class="reference·internal"·href="mtm_baseband_power.html#test-1">Test·1</a></li>
75 <li·class="toctree-l2"><a·class="reference·internal"·href="mtm_baseband_power.html#test-2">Test·2</a></li>77 <li·class="toctree-l2"><a·class="reference·internal"·href="mtm_baseband_power.html#test-2">Test·2</a></li>
76 </ul>78 </ul>
77 </li>79 </li>
78 <li·class="toctree-l1"><a·class="reference·internal"·href="granger_fmri.html">Granger·‘causality’·of·fMRI·data</a><ul>80 <li·class="toctree-l1"><a·class="reference·internal"·href="granger_fmri.html">Granger·‘causality’·of·fMRI·data</a><ul>
79 <li·class="toctree-l2"><a·class="reference·internal"·href="granger_fmri.html#references">References</a></li>81 <li·class="toctree-l2"><a·class="reference·internal"·href="granger_fmri.html#references">References</a></li>
80 </ul>82 </ul>
81 </li>83 </li>
 84 <li·class="toctree-l1"><a·class="reference·internal"·href="multi_taper_coh.html">Multitaper·coherence·estimation</a></li>
82 <li·class="toctree-l1"><a·class="reference·internal"·href="ar_est_2vars.html">Multivariate·auto-regressive·modeling</a></li>85 <li·class="toctree-l1"><a·class="reference·internal"·href="ar_est_2vars.html">Multivariate·auto-regressive·modeling</a></li>
83 <li·class="toctree-l1"><a·class="reference·internal"·href="snr_example.html">Calculation·of·signal-to-noise·and·information</a></li> 
84 <li·class="toctree-l1"><a·class="reference·internal"·href="grasshopper.html">Auditory·processing·in·grasshoppers</a></li> 
85 <li·class="toctree-l1"><a·class="reference·internal"·href="event_related_fmri.html">Event-related·fMRI</a></li> 
86 <li·class="toctree-l1"><a·class="reference·internal"·href="ar_model_fit.html">Fitting·an·MAR·model:·analyzer·interface</a></li>86 <li·class="toctree-l1"><a·class="reference·internal"·href="ar_model_fit.html">Fitting·an·MAR·model:·analyzer·interface</a></li>
87 <li·class="toctree-l1"><a·class="reference·internal"·href="resting_state_fmri.html">Coherency·analysis·of·fMRI·data</a></li>87 <li·class="toctree-l1"><a·class="reference·internal"·href="filtering_fmri.html">Filtering·and·normalizing·fMRI·data</a></li>
 88 <li·class="toctree-l1"><a·class="reference·internal"·href="mtm_harmonic_test.html">Multitaper·F-test·for·harmonic·components</a></li>
88 <li·class="toctree-l1"><a·class="reference·internal"·href="ar_est_3vars.html">Multivariate·auto-regressive·modeling·-·3·variables</a></li>89 <li·class="toctree-l1"><a·class="reference·internal"·href="ar_est_3vars.html">Multivariate·auto-regressive·modeling·-·3·variables</a></li>
89 <li·class="toctree-l1"><a·class="reference·internal"·href="multi_taper_coh.html">Multitaper·coherence·estimation</a></li> 
90 <li·class="toctree-l1"><a·class="reference·internal"·href="ar_est_1var.html">Fitting·an·AR·model:·algorithm·module·interface</a></li>90 <li·class="toctree-l1"><a·class="reference·internal"·href="ar_est_1var.html">Fitting·an·AR·model:·algorithm·module·interface</a></li>
91 <li·class="toctree-l1"><a·class="reference·internal"·href="multi_taper_spectral_estimation.html">Multitaper·spectral·estimation</a></li> 
92 <li·class="toctree-l1"><a·class="reference·internal"·href="mtm_harmonic_test.html">Multitaper·F-test·for·harmonic·components</a></li> 
93 <li·class="toctree-l1"><a·class="reference·internal"·href="seed_analysis.html">Seed·correlation/coherence·with·fMRI·data</a></li>91 <li·class="toctree-l1"><a·class="reference·internal"·href="grasshopper.html">Auditory·processing·in·grasshoppers</a></li>
 92 <li·class="toctree-l1"><a·class="reference·internal"·href="snr_example.html">Calculation·of·signal-to-noise·and·information</a></li>
 93 <li·class="toctree-l1"><a·class="reference·internal"·href="resting_state_fmri.html">Coherency·analysis·of·fMRI·data</a></li>
94 </ul>94 </ul>
95 </div>95 </div>
96 </div>96 </div>
  
  
97 ············<div·class="clearer"></div>97 ············<div·class="clearer"></div>
98 ··········</div>98 ··········</div>
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124 ··</ul>124 ··</ul>
  
  
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126 ··<p·class="topless"><a·href="../whatsnew/version0.3.html"126 ··<p·class="topless"><a·href="../whatsnew/version0.3.html"
127 ························title="previous·chapter">Release·notes·for·nitime·version·0.3</a></p>127 ························title="previous·chapter">Release·notes·for·nitime·version·0.3</a></p>
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 130 ························title="next·chapter">Multitaper·spectral·estimation</a></p>
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135 ······<input·type="text"·name="q"·aria-labelledby="searchlabel"·/>135 ······<input·type="text"·name="q"·aria-labelledby="searchlabel"·/>
136 ······<input·type="submit"·value="Go"·/>136 ······<input·type="submit"·value="Go"·/>
137 ····</form>137 ····</form>
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151 ··········<a·href="../genindex.html"·title="General·Index"151 ··········<a·href="../genindex.html"·title="General·Index"
152 ·············>index</a></li>152 ·············>index</a></li>
153 ········<li·class="right"·>153 ········<li·class="right"·>
154 ··········<a·href="../py-modindex.html"·title="Python·Module·Index"154 ··········<a·href="../py-modindex.html"·title="Python·Module·Index"
155 ·············>modules</a>·|</li>155 ·············>modules</a>·|</li>
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157 ··········<a·href="filtering_fmri.html"·title="Filtering·and·normalizing·fMRI·data"157 ··········<a·href="multi_taper_spectral_estimation.html"·title="Multitaper·spectral·estimation"
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25 functioning·python·scripts,·which·are·available·as·part·of·the·source25 functioning·python·scripts,·which·are·available·as·part·of·the·source
26 distribution·in·the·doc/examples·folder.26 distribution·in·the·doc/examples·folder.
27 If·you·want·to·replicate·a·particular·analysis·or·visualization,·simply·copy27 If·you·want·to·replicate·a·particular·analysis·or·visualization,·simply·copy
28 the·relevant·â€œ.py”·script·from·the·source·distribution,·or·download·the28 the·relevant·â€œ.py”·script·from·the·source·distribution,·or·download·the
29 script·using·the·link·at·the·bottom·of·each·page.29 script·using·the·link·at·the·bottom·of·each·page.
30 Thanks·to·the·developers·of·PyMVPA·for·designing·the·software·which·enables·us30 Thanks·to·the·developers·of·PyMVPA·for·designing·the·software·which·enables·us
31 to·provide·these·documented·examples!31 to·provide·these·documented·examples!
32 ····*·Filtering_and_normalizing_fMRI_data32 ····*·Multitaper_spectral_estimation
 33 ····*·Event-related_fMRI
 34 ····*·Seed_correlation/coherence_with_fMRI_data
33 ····*·Multitaper_method_for_baseband_demodulation35 ····*·Multitaper_method_for_baseband_demodulation
34 ··········o·Test_136 ··········o·Test_1
35 ··········o·Test_237 ··········o·Test_2
36 ····*·Granger_‘causality’_of_fMRI_data38 ····*·Granger_‘causality’_of_fMRI_data
37 ··········o·References39 ··········o·References
 40 ····*·Multitaper_coherence_estimation
38 ····*·Multivariate_auto-regressive_modeling41 ····*·Multivariate_auto-regressive_modeling
39 ····*·Calculation_of_signal-to-noise_and_information 
40 ····*·Auditory_processing_in_grasshoppers 
41 ····*·Event-related_fMRI 
42 ····*·Fitting_an_MAR_model:_analyzer_interface42 ····*·Fitting_an_MAR_model:_analyzer_interface
43 ····*·Coherency_analysis_of_fMRI_data43 ····*·Filtering_and_normalizing_fMRI_data
 44 ····*·Multitaper_F-test_for_harmonic_components
44 ····*·Multivariate_auto-regressive_modeling_-_3_variables45 ····*·Multivariate_auto-regressive_modeling_-_3_variables
45 ····*·Multitaper_coherence_estimation 
46 ····*·Fitting_an_AR_model:_algorithm_module_interface46 ····*·Fitting_an_AR_model:_algorithm_module_interface
47 ····*·Multitaper_spectral_estimation 
48 ····*·Multitaper_F-test_for_harmonic_components 
49 ····*·Seed_correlation/coherence_with_fMRI_data47 ····*·Auditory_processing_in_grasshoppers
 48 ····*·Calculation_of_signal-to-noise_and_information
 49 ····*·Coherency_analysis_of_fMRI_data
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