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Offset 31526, 15 lines modifiedOffset 31526, 15 lines modified
31526 ··parse(Object,_char,_boolean,_boolean)·-·Static·method·in·class31526 ··parse(Object,_char,_boolean,_boolean)·-·Static·method·in·class
31527 ··org.forester.util.BasicTableParser31527 ··org.forester.util.BasicTableParser
31528 ······ 31528 ······ 
31529 ··parse(Object,_char,_boolean,_boolean,_String,_boolean)·-·Static·method·in31529 ··parse(Object,_char,_boolean,_boolean,_String,_boolean)·-·Static·method·in
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31531 ······ 31531 ······ 
31532 ··parse(Readable,_ParseListener)·-·Method·in·class31532 ··parse(Readable,_ParseListener)·-·Method·in·class
31533 ··org.biojava.nbio.genome.io.fastq.SangerFastqReader31533 ··org.biojava.nbio.genome.io.fastq.IlluminaFastqReader
31534 ······ 31534 ······ 
31535 ··parse(Readable,_ParseListener)·-·Method·in·interface31535 ··parse(Readable,_ParseListener)·-·Method·in·interface
31536 ··org.biojava.nbio.genome.io.fastq.FastqReader31536 ··org.biojava.nbio.genome.io.fastq.FastqReader
31537 ······Parse·the·specified·readable.31537 ······Parse·the·specified·readable.
31538 ··parse(String)·-·Method·in·class31538 ··parse(String)·-·Method·in·class
31539 ··org.biojava.nbio.alignment.io.StockholmFileParser31539 ··org.biojava.nbio.alignment.io.StockholmFileParser
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33777 ··read(char[],_int,_int)·-·Method·in·class33777 ··read(char[],_int,_int)·-·Method·in·class
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33779 ······Reads·characters·into·a·portion·of·an·array.33779 ······Reads·characters·into·a·portion·of·an·array.
33780 ··read(BufferedReader)·-·Static·method·in·class33780 ··read(BufferedReader)·-·Static·method·in·class
33781 ··org.biojava.nbio.structure.jama.Matrix33781 ··org.biojava.nbio.structure.jama.Matrix
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33783 ··read(File)·-·Method·in·class33783 ··read(File)·-·Method·in·class
33784 ··org.biojava.nbio.genome.io.fastq.SangerFastqReader33784 ··org.biojava.nbio.genome.io.fastq.IlluminaFastqReader
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33787 ······Read·zero·or·more·FASTQ·formatted·sequences·from·the·specified·file.33787 ······Read·zero·or·more·FASTQ·formatted·sequences·from·the·specified·file.
33788 ··read(InputStream)·-·Method·in·class33788 ··read(InputStream)·-·Method·in·class
33789 ··org.biojava.nbio.genome.io.fastq.SangerFastqReader33789 ··org.biojava.nbio.genome.io.fastq.IlluminaFastqReader
33790 ······ 33790 ······ 
33791 ··read(InputStream)·-·Method·in·interface33791 ··read(InputStream)·-·Method·in·interface
33792 ··org.biojava.nbio.genome.io.fastq.FastqReader33792 ··org.biojava.nbio.genome.io.fastq.FastqReader
33793 ······Read·zero·or·more·FASTQ·formatted·sequences·from·the·specified·input33793 ······Read·zero·or·more·FASTQ·formatted·sequences·from·the·specified·input
33794 ······stream.33794 ······stream.
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Offset 33801, 15 lines modifiedOffset 33801, 15 lines modified
33801 ··read(String)·-·Static·method·in·class33801 ··read(String)·-·Static·method·in·class
33802 ··org.biojava.nbio.genome.parsers.gff.GFF3Reader33802 ··org.biojava.nbio.genome.parsers.gff.GFF3Reader
33803 ······ 33803 ······ 
33804 ··read(String,_List<String>)·-·Static·method·in·class33804 ··read(String,_List<String>)·-·Static·method·in·class
33805 ··org.biojava.nbio.genome.parsers.gff.GFF3Reader33805 ··org.biojava.nbio.genome.parsers.gff.GFF3Reader
33806 ······Read·a·file·into·a·FeatureList.33806 ······Read·a·file·into·a·FeatureList.
33807 ··read(URL)·-·Method·in·class33807 ··read(URL)·-·Method·in·class
33808 ··org.biojava.nbio.genome.io.fastq.SangerFastqReader33808 ··org.biojava.nbio.genome.io.fastq.IlluminaFastqReader
33809 ······ 33809 ······ 
33810 ··read(URL)·-·Method·in·interface·org.biojava.nbio.genome.io.fastq.FastqReader33810 ··read(URL)·-·Method·in·interface·org.biojava.nbio.genome.io.fastq.FastqReader
33811 ······Read·zero·or·more·FASTQ·formatted·sequences·from·the·specified·url.33811 ······Read·zero·or·more·FASTQ·formatted·sequences·from·the·specified·url.
33812 ··read(Path)·-·Static·method·in·class33812 ··read(Path)·-·Static·method·in·class
33813 ··org.biojava.nbio.genome.parsers.gff.GFF3Reader33813 ··org.biojava.nbio.genome.parsers.gff.GFF3Reader
33814 ······ 33814 ······ 
33815 ··read(Path,_List<String>)·-·Static·method·in·class33815 ··read(Path,_List<String>)·-·Static·method·in·class
Offset 42726, 15 lines modifiedOffset 42726, 15 lines modified
42726 ······ 42726 ······ 
42727 ··StrCompAlignment·-·Class·in·org.biojava.nbio.structure.align.pairwise42727 ··StrCompAlignment·-·Class·in·org.biojava.nbio.structure.align.pairwise
42728 ······ 42728 ······ 
42729 ··StrCompAlignment(int,_int)·-·Constructor·for·class42729 ··StrCompAlignment(int,_int)·-·Constructor·for·class
42730 ··org.biojava.nbio.structure.align.pairwise.StrCompAlignment42730 ··org.biojava.nbio.structure.align.pairwise.StrCompAlignment
42731 ······ 42731 ······ 
42732 ··stream(Readable,_StreamListener)·-·Method·in·class42732 ··stream(Readable,_StreamListener)·-·Method·in·class
42733 ··org.biojava.nbio.genome.io.fastq.SangerFastqReader42733 ··org.biojava.nbio.genome.io.fastq.IlluminaFastqReader
42734 ······ 42734 ······ 
42735 ··stream(Readable,_StreamListener)·-·Method·in·interface42735 ··stream(Readable,_StreamListener)·-·Method·in·interface
42736 ··org.biojava.nbio.genome.io.fastq.FastqReader42736 ··org.biojava.nbio.genome.io.fastq.FastqReader
42737 ······Stream·the·specified·readable.42737 ······Stream·the·specified·readable.
42738 ··StreamListener·-·Interface·in·org.biojava.nbio.genome.io.fastq42738 ··StreamListener·-·Interface·in·org.biojava.nbio.genome.io.fastq
42739 ······Event·based·parser·callback.42739 ······Event·based·parser·callback.
42740 ··stringArrayToString(String[])·-·Static·method·in·class42740 ··stringArrayToString(String[])·-·Static·method·in·class
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./usr/share/doc/libbiojava6-java/apidocs/member-search-index.js
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js-beautify {}
    
Offset 43564, 15 lines modifiedOffset 43564, 15 lines modified
43564 },·{43564 },·{
43565 ····"p":·"org.forester.util",43565 ····"p":·"org.forester.util",
43566 ····"c":·"BasicTableParser",43566 ····"c":·"BasicTableParser",
43567 ····"l":·"parse(Object,·char,·boolean,·boolean,·String,·boolean)",43567 ····"l":·"parse(Object,·char,·boolean,·boolean,·String,·boolean)",
43568 ····"u":·"parse(java.lang.Object,char,boolean,boolean,java.lang.String,boolean)"43568 ····"u":·"parse(java.lang.Object,char,boolean,boolean,java.lang.String,boolean)"
43569 },·{43569 },·{
43570 ····"p":·"org.biojava.nbio.genome.io.fastq",43570 ····"p":·"org.biojava.nbio.genome.io.fastq",
43571 ····"c":·"SangerFastqReader",43571 ····"c":·"IlluminaFastqReader",
43572 ····"l":·"parse(Readable,·ParseListener)",43572 ····"l":·"parse(Readable,·ParseListener)",
43573 ····"u":·"parse(java.lang.Readable,org.biojava.nbio.genome.io.fastq.ParseListener)"43573 ····"u":·"parse(java.lang.Readable,org.biojava.nbio.genome.io.fastq.ParseListener)"
43574 },·{43574 },·{
43575 ····"p":·"org.biojava.nbio.genome.io.fastq",43575 ····"p":·"org.biojava.nbio.genome.io.fastq",
43576 ····"c":·"FastqReader",43576 ····"c":·"FastqReader",
43577 ····"l":·"parse(Readable,·ParseListener)",43577 ····"l":·"parse(Readable,·ParseListener)",
43578 ····"u":·"parse(java.lang.Readable,org.biojava.nbio.genome.io.fastq.ParseListener)"43578 ····"u":·"parse(java.lang.Readable,org.biojava.nbio.genome.io.fastq.ParseListener)"
Offset 46521, 25 lines modifiedOffset 46521, 25 lines modified
46521 },·{46521 },·{
46522 ····"p":·"org.biojava.nbio.core.sequence.io",46522 ····"p":·"org.biojava.nbio.core.sequence.io",
46523 ····"c":·"BufferedReaderBytesRead",46523 ····"c":·"BufferedReaderBytesRead",
46524 ····"l":·"read(char[],·int,·int)",46524 ····"l":·"read(char[],·int,·int)",
46525 ····"u":·"read(char[],int,int)"46525 ····"u":·"read(char[],int,int)"
46526 },·{46526 },·{
46527 ····"p":·"org.biojava.nbio.genome.io.fastq",46527 ····"p":·"org.biojava.nbio.genome.io.fastq",
46528 ····"c":·"SangerFastqReader",46528 ····"c":·"IlluminaFastqReader",
46529 ····"l":·"read(File)",46529 ····"l":·"read(File)",
46530 ····"u":·"read(java.io.File)"46530 ····"u":·"read(java.io.File)"
46531 },·{46531 },·{
46532 ····"p":·"org.biojava.nbio.genome.io.fastq",46532 ····"p":·"org.biojava.nbio.genome.io.fastq",
46533 ····"c":·"FastqReader",46533 ····"c":·"FastqReader",
46534 ····"l":·"read(File)",46534 ····"l":·"read(File)",
46535 ····"u":·"read(java.io.File)"46535 ····"u":·"read(java.io.File)"
46536 },·{46536 },·{
46537 ····"p":·"org.biojava.nbio.genome.io.fastq",46537 ····"p":·"org.biojava.nbio.genome.io.fastq",
46538 ····"c":·"SangerFastqReader",46538 ····"c":·"IlluminaFastqReader",
46539 ····"l":·"read(InputStream)",46539 ····"l":·"read(InputStream)",
46540 ····"u":·"read(java.io.InputStream)"46540 ····"u":·"read(java.io.InputStream)"
46541 },·{46541 },·{
46542 ····"p":·"org.biojava.nbio.genome.io.fastq",46542 ····"p":·"org.biojava.nbio.genome.io.fastq",
46543 ····"c":·"FastqReader",46543 ····"c":·"FastqReader",
46544 ····"l":·"read(InputStream)",46544 ····"l":·"read(InputStream)",
46545 ····"u":·"read(java.io.InputStream)"46545 ····"u":·"read(java.io.InputStream)"
Offset 46571, 15 lines modifiedOffset 46571, 15 lines modified
46571 },·{46571 },·{
46572 ····"p":·"org.biojava.nbio.genome.parsers.gff",46572 ····"p":·"org.biojava.nbio.genome.parsers.gff",
46573 ····"c":·"GFF3Reader",46573 ····"c":·"GFF3Reader",
46574 ····"l":·"read(String,·List<String>)",46574 ····"l":·"read(String,·List<String>)",
46575 ····"u":·"read(java.lang.String,java.util.List)"46575 ····"u":·"read(java.lang.String,java.util.List)"
46576 },·{46576 },·{
46577 ····"p":·"org.biojava.nbio.genome.io.fastq",46577 ····"p":·"org.biojava.nbio.genome.io.fastq",
46578 ····"c":·"SangerFastqReader",46578 ····"c":·"IlluminaFastqReader",
46579 ····"l":·"read(URL)",46579 ····"l":·"read(URL)",
46580 ····"u":·"read(java.net.URL)"46580 ····"u":·"read(java.net.URL)"
46581 },·{46581 },·{
46582 ····"p":·"org.biojava.nbio.genome.io.fastq",46582 ····"p":·"org.biojava.nbio.genome.io.fastq",
46583 ····"c":·"FastqReader",46583 ····"c":·"FastqReader",
46584 ····"l":·"read(URL)",46584 ····"l":·"read(URL)",
46585 ····"u":·"read(java.net.URL)"46585 ····"u":·"read(java.net.URL)"
Offset 59825, 15 lines modifiedOffset 59825, 15 lines modified
59825 },·{59825 },·{
59826 ····"p":·"org.biojava.nbio.structure.align.pairwise",59826 ····"p":·"org.biojava.nbio.structure.align.pairwise",
59827 ····"c":·"StrCompAlignment",59827 ····"c":·"StrCompAlignment",
59828 ····"l":·"StrCompAlignment(int,·int)",59828 ····"l":·"StrCompAlignment(int,·int)",
59829 ····"u":·"%3Cinit%3E(int,int)"59829 ····"u":·"%3Cinit%3E(int,int)"
59830 },·{59830 },·{
59831 ····"p":·"org.biojava.nbio.genome.io.fastq",59831 ····"p":·"org.biojava.nbio.genome.io.fastq",
59832 ····"c":·"SangerFastqReader",59832 ····"c":·"IlluminaFastqReader",
59833 ····"l":·"stream(Readable,·StreamListener)",59833 ····"l":·"stream(Readable,·StreamListener)",
59834 ····"u":·"stream(java.lang.Readable,org.biojava.nbio.genome.io.fastq.StreamListener)"59834 ····"u":·"stream(java.lang.Readable,org.biojava.nbio.genome.io.fastq.StreamListener)"
59835 },·{59835 },·{
59836 ····"p":·"org.biojava.nbio.genome.io.fastq",59836 ····"p":·"org.biojava.nbio.genome.io.fastq",
59837 ····"c":·"FastqReader",59837 ····"c":·"FastqReader",
59838 ····"l":·"stream(Readable,·StreamListener)",59838 ····"l":·"stream(Readable,·StreamListener)",
59839 ····"u":·"stream(java.lang.Readable,org.biojava.nbio.genome.io.fastq.StreamListener)"59839 ····"u":·"stream(java.lang.Readable,org.biojava.nbio.genome.io.fastq.StreamListener)"
Generated by diffoscope 254