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1 Package:·libbiojava5-java-doc1 Package:·libbiojava5-java-doc
2 Source:·biojava5-live2 Source:·biojava5-live
3 Version:·5.4.0+dfsg-53 Version:·5.4.0+dfsg-5
4 Architecture:·all4 Architecture:·all
5 Maintainer:·Debian·Med·Packaging·Team·<debian-med-packaging@lists.alioth.debian.org>5 Maintainer:·Debian·Med·Packaging·Team·<debian-med-packaging@lists.alioth.debian.org>
6 Installed-Size:·723136 Installed-Size:·72314
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8 Suggests:·libbiojava5-java·(=·5.4.0+dfsg-5)8 Suggests:·libbiojava5-java·(=·5.4.0+dfsg-5)
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10 Priority:·optional10 Priority:·optional
11 Multi-Arch:·foreign11 Multi-Arch:·foreign
12 Homepage:·https://www.biojava.org12 Homepage:·https://www.biojava.org
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Offset 34708, 15 lines modifiedOffset 34708, 15 lines modified
34708 ··parse(Object,_char,_boolean,_boolean)·-·Static·method·in·class34708 ··parse(Object,_char,_boolean,_boolean)·-·Static·method·in·class
34709 ··org.forester.util.BasicTableParser34709 ··org.forester.util.BasicTableParser
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34711 ··parse(Object,_char,_boolean,_boolean,_String,_boolean)·-·Static·method·in34711 ··parse(Object,_char,_boolean,_boolean,_String,_boolean)·-·Static·method·in
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34713 ······ 34713 ······ 
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34715 ··org.biojava.nbio.genome.io.fastq.SangerFastqReader34715 ··org.biojava.nbio.genome.io.fastq.IlluminaFastqReader
34716 ······ 34716 ······ 
34717 ··parse(Readable,_ParseListener)·-·Method·in·interface34717 ··parse(Readable,_ParseListener)·-·Method·in·interface
34718 ··org.biojava.nbio.genome.io.fastq.FastqReader34718 ··org.biojava.nbio.genome.io.fastq.FastqReader
34719 ······Parse·the·specified·readable.34719 ······Parse·the·specified·readable.
34720 ··parse(String)·-·Method·in·class34720 ··parse(String)·-·Method·in·class
34721 ··org.biojava.nbio.alignment.io.StockholmFileParser34721 ··org.biojava.nbio.alignment.io.StockholmFileParser
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Offset 37163, 20 lines modifiedOffset 37163, 20 lines modified
37163 ··read(char[],_int,_int)·-·Method·in·class37163 ··read(char[],_int,_int)·-·Method·in·class
37164 ··org.biojava.nbio.core.sequence.io.BufferedReaderBytesRead37164 ··org.biojava.nbio.core.sequence.io.BufferedReaderBytesRead
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37166 ··read(BufferedReader)·-·Static·method·in·class37166 ··read(BufferedReader)·-·Static·method·in·class
37167 ··org.biojava.nbio.structure.jama.Matrix37167 ··org.biojava.nbio.structure.jama.Matrix
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37169 ··read(File)·-·Method·in·class37169 ··read(File)·-·Method·in·class
37170 ··org.biojava.nbio.genome.io.fastq.SangerFastqReader37170 ··org.biojava.nbio.genome.io.fastq.IlluminaFastqReader
37171 ······ 37171 ······ 
37172 ··read(File)·-·Method·in·interface·org.biojava.nbio.genome.io.fastq.FastqReader37172 ··read(File)·-·Method·in·interface·org.biojava.nbio.genome.io.fastq.FastqReader
37173 ······Read·zero·or·more·FASTQ·formatted·sequences·from·the·specified·file.37173 ······Read·zero·or·more·FASTQ·formatted·sequences·from·the·specified·file.
37174 ··read(InputStream)·-·Method·in·class37174 ··read(InputStream)·-·Method·in·class
37175 ··org.biojava.nbio.genome.io.fastq.SangerFastqReader37175 ··org.biojava.nbio.genome.io.fastq.IlluminaFastqReader
37176 ······ 37176 ······ 
37177 ··read(InputStream)·-·Method·in·interface37177 ··read(InputStream)·-·Method·in·interface
37178 ··org.biojava.nbio.genome.io.fastq.FastqReader37178 ··org.biojava.nbio.genome.io.fastq.FastqReader
37179 ······Read·zero·or·more·FASTQ·formatted·sequences·from·the·specified·input37179 ······Read·zero·or·more·FASTQ·formatted·sequences·from·the·specified·input
37180 ······stream.37180 ······stream.
37181 ··read(String)·-·Static·method·in·class37181 ··read(String)·-·Static·method·in·class
37182 ··org.biojava.nbio.genome.parsers.gff.GeneIDGFF2Reader37182 ··org.biojava.nbio.genome.parsers.gff.GeneIDGFF2Reader
Offset 37187, 15 lines modifiedOffset 37187, 15 lines modified
37187 ··read(String)·-·Static·method·in·class37187 ··read(String)·-·Static·method·in·class
37188 ··org.biojava.nbio.genome.parsers.gff.GFF3Reader37188 ··org.biojava.nbio.genome.parsers.gff.GFF3Reader
37189 ······ 37189 ······ 
37190 ··read(String,_List<String>)·-·Static·method·in·class37190 ··read(String,_List<String>)·-·Static·method·in·class
37191 ··org.biojava.nbio.genome.parsers.gff.GFF3Reader37191 ··org.biojava.nbio.genome.parsers.gff.GFF3Reader
37192 ······Read·a·file·into·a·FeatureList.37192 ······Read·a·file·into·a·FeatureList.
37193 ··read(URL)·-·Method·in·class37193 ··read(URL)·-·Method·in·class
37194 ··org.biojava.nbio.genome.io.fastq.SangerFastqReader37194 ··org.biojava.nbio.genome.io.fastq.IlluminaFastqReader
37195 ······ 37195 ······ 
37196 ··read(URL)·-·Method·in·interface·org.biojava.nbio.genome.io.fastq.FastqReader37196 ··read(URL)·-·Method·in·interface·org.biojava.nbio.genome.io.fastq.FastqReader
37197 ······Read·zero·or·more·FASTQ·formatted·sequences·from·the·specified·url.37197 ······Read·zero·or·more·FASTQ·formatted·sequences·from·the·specified·url.
37198 ··readableFiles·-·Static·variable·in·class37198 ··readableFiles·-·Static·variable·in·class
37199 ··org.biojava.nbio.core.sequence.io.GenbankSequenceParser37199 ··org.biojava.nbio.core.sequence.io.GenbankSequenceParser
37200 ······ 37200 ······ 
37201 ··readCSV(File,_char)·-·Static·method·in·class37201 ··readCSV(File,_char)·-·Static·method·in·class
Offset 48232, 15 lines modifiedOffset 48232, 15 lines modified
48232 ······ 48232 ······ 
48233 ··StrCompAlignment·-·Class·in·org.biojava.nbio.structure.align.pairwise48233 ··StrCompAlignment·-·Class·in·org.biojava.nbio.structure.align.pairwise
48234 ······ 48234 ······ 
48235 ··StrCompAlignment(int,_int)·-·Constructor·for·class48235 ··StrCompAlignment(int,_int)·-·Constructor·for·class
48236 ··org.biojava.nbio.structure.align.pairwise.StrCompAlignment48236 ··org.biojava.nbio.structure.align.pairwise.StrCompAlignment
48237 ······ 48237 ······ 
48238 ··stream(Readable,_StreamListener)·-·Method·in·class48238 ··stream(Readable,_StreamListener)·-·Method·in·class
48239 ··org.biojava.nbio.genome.io.fastq.SangerFastqReader48239 ··org.biojava.nbio.genome.io.fastq.IlluminaFastqReader
48240 ······ 48240 ······ 
48241 ··stream(Readable,_StreamListener)·-·Method·in·interface48241 ··stream(Readable,_StreamListener)·-·Method·in·interface
48242 ··org.biojava.nbio.genome.io.fastq.FastqReader48242 ··org.biojava.nbio.genome.io.fastq.FastqReader
48243 ······Stream·the·specified·readable.48243 ······Stream·the·specified·readable.
48244 ··StreamListener·-·Interface·in·org.biojava.nbio.genome.io.fastq48244 ··StreamListener·-·Interface·in·org.biojava.nbio.genome.io.fastq
48245 ······Event·based·parser·callback.48245 ······Event·based·parser·callback.
48246 ··STRING_LIMIT·-·Static·variable·in·class48246 ··STRING_LIMIT·-·Static·variable·in·class
⊟
2.75 KB
./usr/share/doc/libbiojava5-java/apidocs/member-search-index.js
⊟
2.62 KB
js-beautify {}
    
Offset 47944, 15 lines modifiedOffset 47944, 15 lines modified
47944 },·{47944 },·{
47945 ····"p":·"org.forester.util",47945 ····"p":·"org.forester.util",
47946 ····"c":·"BasicTableParser",47946 ····"c":·"BasicTableParser",
47947 ····"l":·"parse(Object,·char,·boolean,·boolean,·String,·boolean)",47947 ····"l":·"parse(Object,·char,·boolean,·boolean,·String,·boolean)",
47948 ····"u":·"parse(java.lang.Object,char,boolean,boolean,java.lang.String,boolean)"47948 ····"u":·"parse(java.lang.Object,char,boolean,boolean,java.lang.String,boolean)"
47949 },·{47949 },·{
47950 ····"p":·"org.biojava.nbio.genome.io.fastq",47950 ····"p":·"org.biojava.nbio.genome.io.fastq",
47951 ····"c":·"SangerFastqReader",47951 ····"c":·"IlluminaFastqReader",
47952 ····"l":·"parse(Readable,·ParseListener)",47952 ····"l":·"parse(Readable,·ParseListener)",
47953 ····"u":·"parse(java.lang.Readable,org.biojava.nbio.genome.io.fastq.ParseListener)"47953 ····"u":·"parse(java.lang.Readable,org.biojava.nbio.genome.io.fastq.ParseListener)"
47954 },·{47954 },·{
47955 ····"p":·"org.biojava.nbio.genome.io.fastq",47955 ····"p":·"org.biojava.nbio.genome.io.fastq",
47956 ····"c":·"FastqReader",47956 ····"c":·"FastqReader",
47957 ····"l":·"parse(Readable,·ParseListener)",47957 ····"l":·"parse(Readable,·ParseListener)",
47958 ····"u":·"parse(java.lang.Readable,org.biojava.nbio.genome.io.fastq.ParseListener)"47958 ····"u":·"parse(java.lang.Readable,org.biojava.nbio.genome.io.fastq.ParseListener)"
Offset 51131, 25 lines modifiedOffset 51131, 25 lines modified
51131 },·{51131 },·{
51132 ····"p":·"org.biojava.nbio.core.sequence.io",51132 ····"p":·"org.biojava.nbio.core.sequence.io",
51133 ····"c":·"BufferedReaderBytesRead",51133 ····"c":·"BufferedReaderBytesRead",
51134 ····"l":·"read(char[],·int,·int)",51134 ····"l":·"read(char[],·int,·int)",
51135 ····"u":·"read(char[],int,int)"51135 ····"u":·"read(char[],int,int)"
51136 },·{51136 },·{
51137 ····"p":·"org.biojava.nbio.genome.io.fastq",51137 ····"p":·"org.biojava.nbio.genome.io.fastq",
51138 ····"c":·"SangerFastqReader",51138 ····"c":·"IlluminaFastqReader",
51139 ····"l":·"read(File)",51139 ····"l":·"read(File)",
51140 ····"u":·"read(java.io.File)"51140 ····"u":·"read(java.io.File)"
51141 },·{51141 },·{
51142 ····"p":·"org.biojava.nbio.genome.io.fastq",51142 ····"p":·"org.biojava.nbio.genome.io.fastq",
51143 ····"c":·"FastqReader",51143 ····"c":·"FastqReader",
51144 ····"l":·"read(File)",51144 ····"l":·"read(File)",
51145 ····"u":·"read(java.io.File)"51145 ····"u":·"read(java.io.File)"
51146 },·{51146 },·{
51147 ····"p":·"org.biojava.nbio.genome.io.fastq",51147 ····"p":·"org.biojava.nbio.genome.io.fastq",
51148 ····"c":·"SangerFastqReader",51148 ····"c":·"IlluminaFastqReader",
51149 ····"l":·"read(InputStream)",51149 ····"l":·"read(InputStream)",
51150 ····"u":·"read(java.io.InputStream)"51150 ····"u":·"read(java.io.InputStream)"
51151 },·{51151 },·{
51152 ····"p":·"org.biojava.nbio.genome.io.fastq",51152 ····"p":·"org.biojava.nbio.genome.io.fastq",
51153 ····"c":·"FastqReader",51153 ····"c":·"FastqReader",
51154 ····"l":·"read(InputStream)",51154 ····"l":·"read(InputStream)",
51155 ····"u":·"read(java.io.InputStream)"51155 ····"u":·"read(java.io.InputStream)"
Offset 51171, 15 lines modifiedOffset 51171, 15 lines modified
51171 },·{51171 },·{
51172 ····"p":·"org.biojava.nbio.genome.parsers.gff",51172 ····"p":·"org.biojava.nbio.genome.parsers.gff",
51173 ····"c":·"GFF3Reader",51173 ····"c":·"GFF3Reader",
51174 ····"l":·"read(String,·List<String>)",51174 ····"l":·"read(String,·List<String>)",
51175 ····"u":·"read(java.lang.String,java.util.List)"51175 ····"u":·"read(java.lang.String,java.util.List)"
51176 },·{51176 },·{
51177 ····"p":·"org.biojava.nbio.genome.io.fastq",51177 ····"p":·"org.biojava.nbio.genome.io.fastq",
51178 ····"c":·"SangerFastqReader",51178 ····"c":·"IlluminaFastqReader",
51179 ····"l":·"read(URL)",51179 ····"l":·"read(URL)",
51180 ····"u":·"read(java.net.URL)"51180 ····"u":·"read(java.net.URL)"
51181 },·{51181 },·{
51182 ····"p":·"org.biojava.nbio.genome.io.fastq",51182 ····"p":·"org.biojava.nbio.genome.io.fastq",
51183 ····"c":·"FastqReader",51183 ····"c":·"FastqReader",
51184 ····"l":·"read(URL)",51184 ····"l":·"read(URL)",
51185 ····"u":·"read(java.net.URL)"51185 ····"u":·"read(java.net.URL)"
Offset 67923, 15 lines modifiedOffset 67923, 15 lines modified
67923 },·{67923 },·{
67924 ····"p":·"org.biojava.nbio.structure.align.pairwise",67924 ····"p":·"org.biojava.nbio.structure.align.pairwise",
67925 ····"c":·"StrCompAlignment",67925 ····"c":·"StrCompAlignment",
67926 ····"l":·"StrCompAlignment(int,·int)",67926 ····"l":·"StrCompAlignment(int,·int)",
67927 ····"u":·"%3Cinit%3E(int,int)"67927 ····"u":·"%3Cinit%3E(int,int)"
67928 },·{67928 },·{
67929 ····"p":·"org.biojava.nbio.genome.io.fastq",67929 ····"p":·"org.biojava.nbio.genome.io.fastq",
67930 ····"c":·"SangerFastqReader",67930 ····"c":·"IlluminaFastqReader",
67931 ····"l":·"stream(Readable,·StreamListener)",67931 ····"l":·"stream(Readable,·StreamListener)",
67932 ····"u":·"stream(java.lang.Readable,org.biojava.nbio.genome.io.fastq.StreamListener)"67932 ····"u":·"stream(java.lang.Readable,org.biojava.nbio.genome.io.fastq.StreamListener)"
67933 },·{67933 },·{
67934 ····"p":·"org.biojava.nbio.genome.io.fastq",67934 ····"p":·"org.biojava.nbio.genome.io.fastq",
67935 ····"c":·"FastqReader",67935 ····"c":·"FastqReader",
67936 ····"l":·"stream(Readable,·StreamListener)",67936 ····"l":·"stream(Readable,·StreamListener)",
67937 ····"u":·"stream(java.lang.Readable,org.biojava.nbio.genome.io.fastq.StreamListener)"67937 ····"u":·"stream(java.lang.Readable,org.biojava.nbio.genome.io.fastq.StreamListener)"
Generated by diffoscope 240