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1 .\"·DO·NOT·MODIFY·THIS·FILE!··It·was·generated·by·help2man·1.49.3.1 .\"·DO·NOT·MODIFY·THIS·FILE!··It·was·generated·by·help2man·1.49.3.
2 .TH·DETECTOR2NEXUS',·"1"·"February·2023"·"detector2nexus',·'--version']"·"User·Commands"2 .TH·DETECTOR2NEXUS',·"1"·"February·2023"·"detector2nexus',·'--version']"·"User·Commands"
3 .SH·NAME3 .SH·NAME
4 detector2nexus',·\-·Converts·a·detector·description·into·a·NeXus·detector·usable·by·other·pyFAI·utilities4 detector2nexus',·\-·Converts·a·detector·description·into·a·NeXus·detector·usable·by·other·pyFAI·utilities
5 .SH·DESCRIPTION5 .SH·DESCRIPTION
6 ['/tmp/tmp1m2p1gh6/detector2nexus',·'\-\-help']6 ['/tmp/tmpljfx7qsf/detector2nexus',·'\-\-help']
7 usage:·detector2nexus·[options]·[options]·\fB\-o\fR·nxs.h57 usage:·detector2nexus·[options]·[options]·\fB\-o\fR·nxs.h5
8 .PP8 .PP
9 Convert·a·complex·detector·definition·(multiple·modules,·possibly·in·3D)·into9 Convert·a·complex·detector·definition·(multiple·modules,·possibly·in·3D)·into
10 a·single·NeXus·detector·definition·together·with·the·mask·(and·much·more·in10 a·single·NeXus·detector·definition·together·with·the·mask·(and·much·more·in
11 the·future)11 the·future)
12 .SS·"options:"12 .SS·"options:"
13 .TP13 .TP
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Similarity: 0.9879166666666667% Differences: {"'cells'": "{0: {'id': '6217c207'}, 1: {'id': '1b2855da'}, 2: {'id': 'f4f42aa1'}, 3: {'id': " "'0aa0b537'}, 4: {'id': 'a510d05c'}, 5: {'id': 'a0bf2205'}, 6: {'id': '40735719'}, 7: " "{'id': 'bed5456a'}, 8: {'id': '77f7c3a9'}, 9: {'id': '9b57d1f5'}, 10: {'id': " "'feaffc02'}, 11: {'id': '2ed2d718'}, 12: {'id': 'c8de049d'}, 13: {'id': 'bc2f3c14'}, " "14: {'id': '0ecb5ec8'}, 15: {'id': '0a24c9f6'}, 16: {'id': 'a2a184e6'}, 17: {'id': " "'c15a6a22'}, 1 […]
    
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1 {1 {
2 ····"cells":·[2 ····"cells":·[
3 ········{3 ········{
4 ············"cell_type":·"markdown",4 ············"cell_type":·"markdown",
5 ············"id":·"7f472646",5 ············"id":·"6217c207",
6 ············"metadata":·{},6 ············"metadata":·{},
7 ············"source":·[7 ············"source":·[
8 ················"#·Signal·separation·between·amorphous·and·crystalline·phases\n",8 ················"#·Signal·separation·between·amorphous·and·crystalline·phases\n",
9 ················"\n"9 ················"\n"
10 ············]10 ············]
11 ········},11 ········},
12 ········{12 ········{
13 ············"cell_type":·"code",13 ············"cell_type":·"code",
14 ············"execution_count":·1,14 ············"execution_count":·1,
15 ············"id":·"ab6b6ea2",15 ············"id":·"1b2855da",
16 ············"metadata":·{},16 ············"metadata":·{},
17 ············"outputs":·[],17 ············"outputs":·[],
18 ············"source":·[18 ············"source":·[
19 ················"%matplotlib·nbagg"19 ················"%matplotlib·nbagg"
20 ············]20 ············]
21 ········},21 ········},
22 ········{22 ········{
23 ············"cell_type":·"code",23 ············"cell_type":·"code",
24 ············"execution_count":·2,24 ············"execution_count":·2,
25 ············"id":·"c66109f8",25 ············"id":·"f4f42aa1",
26 ············"metadata":·{},26 ············"metadata":·{},
27 ············"outputs":·[27 ············"outputs":·[
28 ················{28 ················{
29 ····················"name":·"stdout",29 ····················"name":·"stdout",
30 ····················"output_type":·"stream",30 ····················"output_type":·"stream",
31 ····················"text":·[31 ····················"text":·[
32 ························"Using·pyFAI·version·0.21.0-dev0\n"32 ························"Using·pyFAI·version·0.21.0-dev0\n"
Offset 54, 15 lines modifiedOffset 54, 15 lines modified
54 ················"print(f\"Using·pyFAI·version·{pyFAI.version}\")\n",54 ················"print(f\"Using·pyFAI·version·{pyFAI.version}\")\n",
55 ················"#print(fabio.open(image_file).header[\"_array_data.header_contents\"])"55 ················"#print(fabio.open(image_file).header[\"_array_data.header_contents\"])"
56 ············]56 ············]
57 ········},57 ········},
58 ········{58 ········{
59 ············"cell_type":·"code",59 ············"cell_type":·"code",
60 ············"execution_count":·3,60 ············"execution_count":·3,
61 ············"id":·"6384b153",61 ············"id":·"0aa0b537",
62 ············"metadata":·{},62 ············"metadata":·{},
63 ············"outputs":·[63 ············"outputs":·[
64 ················{64 ················{
65 ····················"data":·{65 ····················"data":·{
66 ························"text/plain":·[66 ························"text/plain":·[
67 ····························"Detector·Pilatus·6M\t·PixelSize=·1.720e-04,·1.720e-04·m\n",67 ····························"Detector·Pilatus·6M\t·PixelSize=·1.720e-04,·1.720e-04·m\n",
68 ····························"Wavelength=·1.033200e-10m\n",68 ····························"Wavelength=·1.033200e-10m\n",
Offset 84, 15 lines modifiedOffset 84, 15 lines modified
84 ················"ai.detector·=·pyFAI.detector_factory(\"Pilatus6M\")\n",84 ················"ai.detector·=·pyFAI.detector_factory(\"Pilatus6M\")\n",
85 ················"ai"85 ················"ai"
86 ············]86 ············]
87 ········},87 ········},
88 ········{88 ········{
89 ············"cell_type":·"code",89 ············"cell_type":·"code",
90 ············"execution_count":·4,90 ············"execution_count":·4,
91 ············"id":·"04a706c4",91 ············"id":·"a510d05c",
92 ············"metadata":·{},92 ············"metadata":·{},
93 ············"outputs":·[93 ············"outputs":·[
94 ················{94 ················{
95 ····················"data":·{95 ····················"data":·{
96 ························"application/javascript":·[96 ························"application/javascript":·[
97 ····························"/*·Put·everything·inside·the·global·mpl·namespace·*/\n",97 ····························"/*·Put·everything·inside·the·global·mpl·namespace·*/\n",
98 ····························"/*·global·mpl·*/\n",98 ····························"/*·global·mpl·*/\n",
Offset 1069, 24 lines modifiedOffset 1069, 24 lines modified
1069 ················"fig,ax·=·subplots(figsize=(9,9))\n",1069 ················"fig,ax·=·subplots(figsize=(9,9))\n",
1070 ················"jupyter.display(img,·ax=ax)\n",1070 ················"jupyter.display(img,·ax=ax)\n",
1071 ················"pass"1071 ················"pass"
1072 ············]1072 ············]
1073 ········},1073 ········},
1074 ········{1074 ········{
1075 ············"cell_type":·"markdown",1075 ············"cell_type":·"markdown",
1076 ············"id":·"4ff93e6f",1076 ············"id":·"a0bf2205",
1077 ············"metadata":·{},1077 ············"metadata":·{},
1078 ············"source":·[1078 ············"source":·[
1079 ················"##·0.·1D·and·2D·integration"1079 ················"##·0.·1D·and·2D·integration"
1080 ············]1080 ············]
1081 ········},1081 ········},
1082 ········{1082 ········{
1083 ············"cell_type":·"code",1083 ············"cell_type":·"code",
1084 ············"execution_count":·5,1084 ············"execution_count":·5,
1085 ············"id":·"d574a975",1085 ············"id":·"40735719",
1086 ············"metadata":·{},1086 ············"metadata":·{},
1087 ············"outputs":·[1087 ············"outputs":·[
1088 ················{1088 ················{
1089 ····················"data":·{1089 ····················"data":·{
1090 ························"application/javascript":·[1090 ························"application/javascript":·[
1091 ····························"/*·Put·everything·inside·the·global·mpl·namespace·*/\n",1091 ····························"/*·Put·everything·inside·the·global·mpl·namespace·*/\n",
1092 ····························"/*·global·mpl·*/\n",1092 ····························"/*·global·mpl·*/\n",
Offset 2078, 30 lines modifiedOffset 2078, 30 lines modified
2078 ················"jupyter.plot2d(int2,·ax=ax[1])\n",2078 ················"jupyter.plot2d(int2,·ax=ax[1])\n",
2079 ················"ax[0].set_xlim(int2.radial.min(),·int2.radial.max())\n",2079 ················"ax[0].set_xlim(int2.radial.min(),·int2.radial.max())\n",
2080 ················"pass"2080 ················"pass"
2081 ············]2081 ············]
2082 ········},2082 ········},
2083 ········{2083 ········{
2084 ············"cell_type":·"markdown",2084 ············"cell_type":·"markdown",
2085 ············"id":·"4a5ede90",2085 ············"id":·"bed5456a",
2086 ············"metadata":·{},2086 ············"metadata":·{},
2087 ············"source":·[2087 ············"source":·[
2088 ················"##·1.·Separation·based·on·2D·integration\n",2088 ················"##·1.·Separation·based·on·2D·integration\n",
2089 ················"\n",2089 ················"\n",
2090 ················"Two·methods·are·readily·available·in·pyFAI,·they·perform·filtering·the·2D·regrouped·image·along·a·vertical·axis:\n",2090 ················"Two·methods·are·readily·available·in·pyFAI,·they·perform·filtering·the·2D·regrouped·image·along·a·vertical·axis:\n",
2091 ················"*·median·filtering:·simple·median·along·azimuthal·angle\n",2091 ················"*·median·filtering:·simple·median·along·azimuthal·angle\n",
2092 ················"*·sigma·clipping:·iterative·removal·of·all·pixels·above·n·standard·deviation\n",2092 ················"*·sigma·clipping:·iterative·removal·of·all·pixels·above·n·standard·deviation\n",
2093 ················"\n",2093 ················"\n",
2094 ················"The·drawback·is·in·the·2D·integration:·costly·in·time·and·smears·pixel·together."2094 ················"The·drawback·is·in·the·2D·integration:·costly·in·time·and·smears·pixel·together."
2095 ············]2095 ············]
2096 ········},2096 ········},
2097 ········{2097 ········{
2098 ············"cell_type":·"code",2098 ············"cell_type":·"code",
2099 ············"execution_count":·6,2099 ············"execution_count":·6,
2100 ············"id":·"73d8efe7",2100 ············"id":·"77f7c3a9",
2101 ············"metadata":·{},2101 ············"metadata":·{},
2102 ············"outputs":·[2102 ············"outputs":·[
2103 ················{2103 ················{
2104 ····················"data":·{2104 ····················"data":·{
2105 ························"application/javascript":·[2105 ························"application/javascript":·[
2106 ····························"/*·Put·everything·inside·the·global·mpl·namespace·*/\n",2106 ····························"/*·Put·everything·inside·the·global·mpl·namespace·*/\n",
2107 ····························"/*·global·mpl·*/\n",2107 ····························"/*·global·mpl·*/\n",
Offset 3108, 29 lines modifiedOffset 3108, 29 lines modified
3108 ················"ax.plot(sc2.radial,·sc2.intensity,·label=\"sigma-clip·(legacy)\")\n",3108 ················"ax.plot(sc2.radial,·sc2.intensity,·label=\"sigma-clip·(legacy)\")\n",
3109 ················"ax.legend()\n",3109 ················"ax.legend()\n",
3110 ················"pass"3110 ················"pass"
3111 ············]3111 ············]
3112 ········},3112 ········},
3113 ········{3113 ········{
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