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75 <li·class="toctree-l2"><a·class="reference·internal"·href="whatsnew/version0.6.html">Release·notes·for·nitime·version·0.6</a></li>75 <li·class="toctree-l2"><a·class="reference·internal"·href="whatsnew/version0.6.html">Release·notes·for·nitime·version·0.6</a></li>
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79 </ul>79 </ul>
80 </li>80 </li>
81 <li·class="toctree-l1"><a·class="reference·internal"·href="examples/index.html">Examples</a><ul>81 <li·class="toctree-l1"><a·class="reference·internal"·href="examples/index.html">Examples</a><ul>
82 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/granger_fmri.html">Granger·‘causality’·of·fMRI·data</a></li> 
83 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/mtm_harmonic_test.html">Multitaper·F-test·for·harmonic·components</a></li> 
84 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/ar_model_fit.html">Fitting·an·MAR·model:·analyzer·interface</a></li> 
85 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/mtm_baseband_power.html">Multitaper·method·for·baseband·demodulation</a></li> 
86 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/seed_analysis.html">Seed·correlation/coherence·with·fMRI·data</a></li> 
87 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/ar_est_2vars.html">Multivariate·auto-regressive·modeling</a></li> 
88 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/event_related_fmri.html">Event-related·fMRI</a></li>82 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/event_related_fmri.html">Event-related·fMRI</a></li>
89 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/filtering_fmri.html">Filtering·and·normalizing·fMRI·data</a></li> 
90 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/ar_est_1var.html">Fitting·an·AR·model:·algorithm·module·interface</a></li>83 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/ar_est_2vars.html">Multivariate·auto-regressive·modeling</a></li>
91 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/ar_est_3vars.html">Multivariate·auto-regressive·modeling·-·3·variables</a></li>84 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/ar_est_3vars.html">Multivariate·auto-regressive·modeling·-·3·variables</a></li>
92 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/resting_state_fmri.html">Coherency·analysis·of·fMRI·data</a></li>85 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/grasshopper.html">Auditory·processing·in·grasshoppers</a></li>
 86 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/ar_model_fit.html">Fitting·an·MAR·model:·analyzer·interface</a></li>
93 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/multi_taper_spectral_estimation.html">Multitaper·spectral·estimation</a></li>87 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/multi_taper_spectral_estimation.html">Multitaper·spectral·estimation</a></li>
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 89 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/ar_est_1var.html">Fitting·an·AR·model:·algorithm·module·interface</a></li>
 90 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/mtm_harmonic_test.html">Multitaper·F-test·for·harmonic·components</a></li>
94 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/multi_taper_coh.html">Multitaper·coherence·estimation</a></li>91 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/multi_taper_coh.html">Multitaper·coherence·estimation</a></li>
95 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/grasshopper.html">Auditory·processing·in·grasshoppers</a></li>92 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/seed_analysis.html">Seed·correlation/coherence·with·fMRI·data</a></li>
 93 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/filtering_fmri.html">Filtering·and·normalizing·fMRI·data</a></li>
96 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/snr_example.html">Calculation·of·signal-to-noise·and·information</a></li>94 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/snr_example.html">Calculation·of·signal-to-noise·and·information</a></li>
 95 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/mtm_baseband_power.html">Multitaper·method·for·baseband·demodulation</a></li>
 96 <li·class="toctree-l2"><a·class="reference·internal"·href="examples/granger_fmri.html">Granger·‘causality’·of·fMRI·data</a></li>
97 </ul>97 </ul>
98 </li>98 </li>
99 <li·class="toctree-l1"><a·class="reference·internal"·href="discussion/index.html">Discussion</a><ul>99 <li·class="toctree-l1"><a·class="reference·internal"·href="discussion/index.html">Discussion</a><ul>
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101 <li·class="toctree-l2"><a·class="reference·internal"·href="discussion/multitaper_jackknife.html">Jack-knifing·a·Multitaper·SDF·estimator</a></li>101 <li·class="toctree-l2"><a·class="reference·internal"·href="discussion/multitaper_jackknife.html">Jack-knifing·a·Multitaper·SDF·estimator</a></li>
102 </ul>102 </ul>
103 </li>103 </li>
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28 ····*·What’s_new_in_Nitime28 ····*·What’s_new_in_Nitime
29 ··········o·Release_notes_for_nitime_version_0.729 ··········o·Release_notes_for_nitime_version_0.7
30 ··········o·Release_notes_for_nitime_version_0.630 ··········o·Release_notes_for_nitime_version_0.6
31 ··········o·Release_notes_for_nitime_version_0.531 ··········o·Release_notes_for_nitime_version_0.5
32 ··········o·Release_notes_for_nitime_version_0.432 ··········o·Release_notes_for_nitime_version_0.4
33 ··········o·Release_notes_for_nitime_version_0.333 ··········o·Release_notes_for_nitime_version_0.3
34 ····*·Examples34 ····*·Examples
35 ··········o·Granger_‘causality’_of_fMRI_data 
36 ··········o·Multitaper_F-test_for_harmonic_components 
37 ··········o·Fitting_an_MAR_model:_analyzer_interface 
38 ··········o·Multitaper_method_for_baseband_demodulation 
39 ··········o·Seed_correlation/coherence_with_fMRI_data 
40 ··········o·Multivariate_auto-regressive_modeling 
41 ··········o·Event-related_fMRI35 ··········o·Event-related_fMRI
 36 ··········o·Multivariate_auto-regressive_modeling
42 ··········o·Filtering_and_normalizing_fMRI_data 
43 ··········o·Fitting_an_AR_model:_algorithm_module_interface 
44 ··········o·Multivariate_auto-regressive_modeling_-_3_variables37 ··········o·Multivariate_auto-regressive_modeling_-_3_variables
45 ··········o·Coherency_analysis_of_fMRI_data38 ··········o·Auditory_processing_in_grasshoppers
 39 ··········o·Fitting_an_MAR_model:_analyzer_interface
46 ··········o·Multitaper_spectral_estimation40 ··········o·Multitaper_spectral_estimation
 41 ··········o·Coherency_analysis_of_fMRI_data
 42 ··········o·Fitting_an_AR_model:_algorithm_module_interface
 43 ··········o·Multitaper_F-test_for_harmonic_components
47 ··········o·Multitaper_coherence_estimation44 ··········o·Multitaper_coherence_estimation
48 ··········o·Auditory_processing_in_grasshoppers45 ··········o·Seed_correlation/coherence_with_fMRI_data
 46 ··········o·Filtering_and_normalizing_fMRI_data
49 ··········o·Calculation_of_signal-to-noise_and_information47 ··········o·Calculation_of_signal-to-noise_and_information
 48 ··········o·Multitaper_method_for_baseband_demodulation
 49 ··········o·Granger_‘causality’_of_fMRI_data
50 ····*·Discussion50 ····*·Discussion
51 ··········o·A_note_about_the_discussion_section51 ··········o·A_note_about_the_discussion_section
52 ··········o·Jack-knifing_a_Multitaper_SDF_estimator52 ··········o·Jack-knifing_a_Multitaper_SDF_estimator
53 ····*·Working_with_nitime_source_code53 ····*·Working_with_nitime_source_code
54 ··········o·Introduction54 ··········o·Introduction
55 ··········o·Install_git55 ··········o·Install_git
56 ··········o·Following_the_latest_source56 ··········o·Following_the_latest_source
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69 <p>If·you·want·to·replicate·a·particular·analysis·or·visualization,·simply·copy69 <p>If·you·want·to·replicate·a·particular·analysis·or·visualization,·simply·copy
70 the·relevant·“.py”·script·from·the·source·distribution,·or·download·the·script70 the·relevant·“.py”·script·from·the·source·distribution,·or·download·the·script
71 using·the·link·at·the·bottom·of·each·page.</p>71 using·the·link·at·the·bottom·of·each·page.</p>
72 <p>Thanks·to·the·developers·of·<a·class="reference·external"·href="http://www.pymvpa.org">PyMVPA</a>·for·designing·the·software·which·enables·us72 <p>Thanks·to·the·developers·of·<a·class="reference·external"·href="http://www.pymvpa.org">PyMVPA</a>·for·designing·the·software·which·enables·us
73 to·provide·these·documented·examples!</p>73 to·provide·these·documented·examples!</p>
74 <div·class="toctree-wrapper·compound">74 <div·class="toctree-wrapper·compound">
75 <ul>75 <ul>
76 <li·class="toctree-l1"><a·class="reference·internal"·href="granger_fmri.html">Granger·‘causality’·of·fMRI·data</a><ul>76 <li·class="toctree-l1"><a·class="reference·internal"·href="event_related_fmri.html">Event-related·fMRI</a></li>
 77 <li·class="toctree-l1"><a·class="reference·internal"·href="ar_est_2vars.html">Multivariate·auto-regressive·modeling</a></li>
 78 <li·class="toctree-l1"><a·class="reference·internal"·href="ar_est_3vars.html">Multivariate·auto-regressive·modeling·-·3·variables</a></li>
 79 <li·class="toctree-l1"><a·class="reference·internal"·href="grasshopper.html">Auditory·processing·in·grasshoppers</a></li>
77 <li·class="toctree-l2"><a·class="reference·internal"·href="granger_fmri.html#references">References</a></li> 
78 </ul> 
79 </li> 
80 <li·class="toctree-l1"><a·class="reference·internal"·href="mtm_harmonic_test.html">Multitaper·F-test·for·harmonic·components</a></li> 
81 <li·class="toctree-l1"><a·class="reference·internal"·href="ar_model_fit.html">Fitting·an·MAR·model:·analyzer·interface</a></li>80 <li·class="toctree-l1"><a·class="reference·internal"·href="ar_model_fit.html">Fitting·an·MAR·model:·analyzer·interface</a></li>
 81 <li·class="toctree-l1"><a·class="reference·internal"·href="multi_taper_spectral_estimation.html">Multitaper·spectral·estimation</a></li>
 82 <li·class="toctree-l1"><a·class="reference·internal"·href="resting_state_fmri.html">Coherency·analysis·of·fMRI·data</a></li>
 83 <li·class="toctree-l1"><a·class="reference·internal"·href="ar_est_1var.html">Fitting·an·AR·model:·algorithm·module·interface</a></li>
 84 <li·class="toctree-l1"><a·class="reference·internal"·href="mtm_harmonic_test.html">Multitaper·F-test·for·harmonic·components</a></li>
 85 <li·class="toctree-l1"><a·class="reference·internal"·href="multi_taper_coh.html">Multitaper·coherence·estimation</a></li>
 86 <li·class="toctree-l1"><a·class="reference·internal"·href="seed_analysis.html">Seed·correlation/coherence·with·fMRI·data</a></li>
 87 <li·class="toctree-l1"><a·class="reference·internal"·href="filtering_fmri.html">Filtering·and·normalizing·fMRI·data</a></li>
 88 <li·class="toctree-l1"><a·class="reference·internal"·href="snr_example.html">Calculation·of·signal-to-noise·and·information</a></li>
82 <li·class="toctree-l1"><a·class="reference·internal"·href="mtm_baseband_power.html">Multitaper·method·for·baseband·demodulation</a><ul>89 <li·class="toctree-l1"><a·class="reference·internal"·href="mtm_baseband_power.html">Multitaper·method·for·baseband·demodulation</a><ul>
83 <li·class="toctree-l2"><a·class="reference·internal"·href="mtm_baseband_power.html#test-1">Test·1</a></li>90 <li·class="toctree-l2"><a·class="reference·internal"·href="mtm_baseband_power.html#test-1">Test·1</a></li>
84 <li·class="toctree-l2"><a·class="reference·internal"·href="mtm_baseband_power.html#test-2">Test·2</a></li>91 <li·class="toctree-l2"><a·class="reference·internal"·href="mtm_baseband_power.html#test-2">Test·2</a></li>
85 </ul>92 </ul>
86 </li>93 </li>
87 <li·class="toctree-l1"><a·class="reference·internal"·href="seed_analysis.html">Seed·correlation/coherence·with·fMRI·data</a></li> 
88 <li·class="toctree-l1"><a·class="reference·internal"·href="ar_est_2vars.html">Multivariate·auto-regressive·modeling</a></li> 
89 <li·class="toctree-l1"><a·class="reference·internal"·href="event_related_fmri.html">Event-related·fMRI</a></li> 
90 <li·class="toctree-l1"><a·class="reference·internal"·href="filtering_fmri.html">Filtering·and·normalizing·fMRI·data</a></li> 
91 <li·class="toctree-l1"><a·class="reference·internal"·href="ar_est_1var.html">Fitting·an·AR·model:·algorithm·module·interface</a></li> 
92 <li·class="toctree-l1"><a·class="reference·internal"·href="ar_est_3vars.html">Multivariate·auto-regressive·modeling·-·3·variables</a></li> 
93 <li·class="toctree-l1"><a·class="reference·internal"·href="resting_state_fmri.html">Coherency·analysis·of·fMRI·data</a></li>94 <li·class="toctree-l1"><a·class="reference·internal"·href="granger_fmri.html">Granger·causality’·of·fMRI·data</a><ul>
 95 <li·class="toctree-l2"><a·class="reference·internal"·href="granger_fmri.html#references">References</a></li>
 96 </ul>
 97 </li>
94 <li·class="toctree-l1"><a·class="reference·internal"·href="multi_taper_spectral_estimation.html">Multitaper·spectral·estimation</a></li> 
95 <li·class="toctree-l1"><a·class="reference·internal"·href="multi_taper_coh.html">Multitaper·coherence·estimation</a></li> 
96 <li·class="toctree-l1"><a·class="reference·internal"·href="grasshopper.html">Auditory·processing·in·grasshoppers</a></li> 
97 <li·class="toctree-l1"><a·class="reference·internal"·href="snr_example.html">Calculation·of·signal-to-noise·and·information</a></li> 
98 </ul>98 </ul>
99 </div>99 </div>
100 </section>100 </section>
  
  
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131 ··<div>131 ··<div>
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135 ··</div>135 ··</div>
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140 ··</div>140 ··</div>
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159 ··········<a·href="../genindex.html"·title="General·Index"159 ··········<a·href="../genindex.html"·title="General·Index"
160 ·············>index</a></li>160 ·············>index</a></li>
161 ········<li·class="right"·>161 ········<li·class="right"·>
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26 functioning·python·scripts,·which·are·available·as·part·of·the·source26 functioning·python·scripts,·which·are·available·as·part·of·the·source
27 distribution·in·the·doc/examples·folder.27 distribution·in·the·doc/examples·folder.
28 If·you·want·to·replicate·a·particular·analysis·or·visualization,·simply·copy28 If·you·want·to·replicate·a·particular·analysis·or·visualization,·simply·copy
29 the·relevant·â€œ.py”·script·from·the·source·distribution,·or·download·the29 the·relevant·â€œ.py”·script·from·the·source·distribution,·or·download·the
30 script·using·the·link·at·the·bottom·of·each·page.30 script·using·the·link·at·the·bottom·of·each·page.
31 Thanks·to·the·developers·of·PyMVPA·for·designing·the·software·which·enables·us31 Thanks·to·the·developers·of·PyMVPA·for·designing·the·software·which·enables·us
32 to·provide·these·documented·examples!32 to·provide·these·documented·examples!
33 ····*·Granger_‘causality’_of_fMRI_data 
34 ··········o·References 
35 ····*·Multitaper_F-test_for_harmonic_components 
36 ····*·Fitting_an_MAR_model:_analyzer_interface 
37 ····*·Multitaper_method_for_baseband_demodulation 
38 ··········o·Test_1 
39 ··········o·Test_2 
40 ····*·Seed_correlation/coherence_with_fMRI_data 
41 ····*·Multivariate_auto-regressive_modeling 
42 ····*·Event-related_fMRI33 ····*·Event-related_fMRI
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43 ····*·Filtering_and_normalizing_fMRI_data 
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