From https://github.com/archlinux/svntogit-community * branch packages/python-biopython -> FETCH_HEAD * [new branch] packages/python-biopython -> community/packages/python-biopython Cloning into 'python-biopython'... done. :: Synchronizing package databases... % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 63 132k 63 85662 0 0 245k 0 --:--:-- --:--:-- --:--:-- 245k 100 132k 100 132k 0 0 386k 0 --:--:-- --:--:-- --:--:-- 385k % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 4 8544k 4 347k 0 0 344k 0 0:00:24 0:00:01 0:00:23 344k 33 8544k 33 2895k 0 0 1434k 0 0:00:05 0:00:02 0:00:03 1434k 74 8544k 74 6330k 0 0 2092k 0 0:00:04 0:00:03 0:00:01 2092k 100 8544k 100 8544k 0 0 2317k 0 0:00:03 0:00:03 --:--:-- 2318k % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 47 143k 47 69278 0 0 398k 0 --:--:-- --:--:-- --:--:-- 397k 100 143k 100 143k 0 0 839k 0 --:--:-- --:--:-- --:--:-- 836k :: Starting full system upgrade... there is nothing to do PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp/archlinux-ci/ GIT_SSL_NO_VERIFY=1 SOURCE_DATE_EPOCH=1690527972 SHELL=/bin/bash SCHROOT_CHROOT_NAME=jenkins-reproducible-archlinux no_proxy=localhost,127.0.0.1 SCHROOT_COMMAND=bash -l -c SOURCE_DATE_EPOCH='1690527972' PATH='/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin' TMPDIR='/tmp/archlinux-ci/' GIT_SSL_NO_VERIFY=1 printenv 2>&1 SCHROOT_SESSION_ID=archlinux-python-biopython-archlinuxrb-build-mGwqkTUY PWD=/tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk LOGNAME=jenkins SCHROOT_ALIAS_NAME=jenkins-reproducible-archlinux SCHROOT_GROUP=jenkins SCHROOT_USER=jenkins ftp_proxy=http://127.0.0.1:3128 HOME=/var/lib/jenkins LANG=C https_proxy=http://127.0.0.1:3128 USER=jenkins FTP_PROXY=http://127.0.0.1:3128 SHLVL=1 HTTPS_PROXY=http://127.0.0.1:3128 HTTP_PROXY=http://127.0.0.1:3128 SCHROOT_GID=116 http_proxy=http://127.0.0.1:3128 DEBUGINFOD_URLS=https://debuginfod.archlinux.org SCHROOT_UID=108 HG=/usr/bin/hg _=/usr/sbin/printenv ==> Making package: python-biopython 1.81-2 (Thu Aug 29 13:29:52 2024) ==> Checking runtime dependencies... ==> Installing missing dependencies... resolving dependencies... looking for conflicting packages... Packages (4) blas-3.11.0-2 cblas-3.11.0-2 lapack-3.11.0-2 python-numpy-1.25.1-1 Total Download Size: 9.42 MiB Total Installed Size: 54.63 MiB :: Proceed with installation? [Y/n] :: Retrieving packages... % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 130k 100 130k 0 0 7764k 0 --:--:-- --:--:-- --:--:-- 8154k % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 36457 100 36457 0 0 2668k 0 --:--:-- --:--:-- --:--:-- 2738k % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 2564k 100 2564k 0 0 69.4M 0 --:--:-- --:--:-- --:--:-- 71.5M % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 6911k 100 6911k 0 0 90.7M 0 --:--:-- --:--:-- --:--:-- 91.2M checking keyring... checking package integrity... loading package files... checking for file conflicts... checking available disk space... :: Processing package changes... installing blas... installing cblas... installing lapack... installing python-numpy... Optional dependencies for python-numpy openblas: faster linear algebra :: Running post-transaction hooks... (1/1) Arming ConditionNeedsUpdate... ==> Checking buildtime dependencies... ==> Installing missing dependencies... resolving dependencies... looking for conflicting packages... Packages (16) python-autocommand-2.2.2-4 python-fastjsonschema-2.18.0-1 python-inflect-7.0.0-1 python-jaraco.context-4.3.0-3 python-jaraco.functools-3.8.0-1 python-jaraco.text-3.11.1-3 python-more-itertools-9.1.1-4 python-ordered-set-4.1.0-4 python-packaging-23.1-1 python-platformdirs-3.9.1-1 python-pydantic-1.10.9-1 python-tomli-2.0.1-3 python-trove-classifiers-2023.7.6-1 python-typing_extensions-4.7.1-1 python-validate-pyproject-0.13-1 python-setuptools-1:68.0.0-1 Total Download Size: 3.27 MiB Total Installed Size: 15.66 MiB :: Proceed with installation? [Y/n] :: Retrieving packages... % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 97506 100 97506 0 0 6156k 0 --:--:-- --:--:-- --:--:-- 6348k % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 16619 100 16619 0 0 2810k 0 --:--:-- --:--:-- --:--:-- 3245k % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 11682 100 11682 0 0 2956k 0 --:--:-- --:--:-- --:--:-- 3802k % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 22922 100 22922 0 0 3307k 0 --:--:-- --:--:-- --:--:-- 3730k % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 69151 100 69151 0 0 11.0M 0 --:--:-- --:--:-- --:--:-- 13.1M % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1968k 100 1968k 0 0 121M 0 --:--:-- --:--:-- --:--:-- 128M % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 78871 100 78871 0 0 41.2M 0 --:--:-- --:--:-- --:--:-- 75.2M % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 21013 100 21013 0 0 13.6M 0 --:--:-- --:--:-- --:--:-- 20.0M % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 16181 100 16181 0 0 2820k 0 --:--:-- --:--:-- --:--:-- 3160k % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 95467 100 95467 0 0 44.7M 0 --:--:-- --:--:-- --:--:-- 91.0M % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 31703 100 31703 0 0 4430k 0 --:--:-- --:--:-- --:--:-- 5159k % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 28235 100 28235 0 0 20.6M 0 --:--:-- --:--:-- --:--:-- 26.9M % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 51142 100 51142 0 0 8160k 0 --:--:-- --:--:-- --:--:-- 8323k % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 15210 100 15210 0 0 2772k 0 --:--:-- --:--:-- --:--:-- 2970k % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 73796 100 73796 0 0 11.7M 0 --:--:-- --:--:-- --:--:-- 14.0M % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 767k 100 767k 0 0 82.7M 0 --:--:-- --:--:-- --:--:-- 93.6M checking keyring... checking package integrity... loading package files... checking for file conflicts... checking available disk space... :: Processing package changes... installing python-more-itertools... installing python-jaraco.functools... installing python-jaraco.context... installing python-autocommand... installing python-typing_extensions... installing python-pydantic... Optional dependencies for python-pydantic python-dotenv: for .env file support python-email-validator: for email validation installing python-inflect... installing python-jaraco.text... installing python-ordered-set... installing python-packaging... installing python-platformdirs... installing python-tomli... installing python-fastjsonschema... installing python-trove-classifiers... installing python-validate-pyproject... installing python-setuptools... :: Running post-transaction hooks... (1/1) Arming ConditionNeedsUpdate... ==> Retrieving sources... -> Downloading biopython-1.81.tar.gz... % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 162 100 162 0 0 15274 0 --:--:-- --:--:-- --:--:-- 16200 0 18.4M 0 0 0 0 0 0 --:--:-- 0:00:01 --:--:-- 0 100 18.4M 100 18.4M 0 0 12.8M 0 0:00:01 0:00:01 --:--:-- 54.8M ==> WARNING: Skipping verification of source file PGP signatures. ==> Validating source files with sha512sums... biopython-1.81.tar.gz ... Passed ==> Extracting sources... -> Extracting biopython-1.81.tar.gz with bsdtar ==> Starting build()... running build running build_py creating build creating build/lib.linux-x86_64-cpython-311 creating build/lib.linux-x86_64-cpython-311/Bio copying Bio/pairwise2.py -> build/lib.linux-x86_64-cpython-311/Bio copying Bio/kNN.py -> build/lib.linux-x86_64-cpython-311/Bio copying Bio/bgzf.py -> build/lib.linux-x86_64-cpython-311/Bio copying Bio/_utils.py -> build/lib.linux-x86_64-cpython-311/Bio copying Bio/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio copying Bio/SeqRecord.py -> build/lib.linux-x86_64-cpython-311/Bio copying Bio/SeqFeature.py -> build/lib.linux-x86_64-cpython-311/Bio copying Bio/Seq.py -> build/lib.linux-x86_64-cpython-311/Bio copying Bio/NaiveBayes.py -> build/lib.linux-x86_64-cpython-311/Bio copying Bio/MaxEntropy.py -> build/lib.linux-x86_64-cpython-311/Bio copying Bio/MarkovModel.py -> build/lib.linux-x86_64-cpython-311/Bio copying Bio/LogisticRegression.py -> build/lib.linux-x86_64-cpython-311/Bio copying Bio/File.py -> build/lib.linux-x86_64-cpython-311/Bio creating build/lib.linux-x86_64-cpython-311/Bio/Affy copying Bio/Affy/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Affy copying Bio/Affy/CelFile.py -> build/lib.linux-x86_64-cpython-311/Bio/Affy creating build/lib.linux-x86_64-cpython-311/Bio/Align copying Bio/Align/tabular.py -> build/lib.linux-x86_64-cpython-311/Bio/Align copying Bio/Align/stockholm.py -> build/lib.linux-x86_64-cpython-311/Bio/Align copying Bio/Align/sam.py -> build/lib.linux-x86_64-cpython-311/Bio/Align copying Bio/Align/psl.py -> build/lib.linux-x86_64-cpython-311/Bio/Align copying Bio/Align/phylip.py -> build/lib.linux-x86_64-cpython-311/Bio/Align copying Bio/Align/nexus.py -> build/lib.linux-x86_64-cpython-311/Bio/Align copying Bio/Align/msf.py -> build/lib.linux-x86_64-cpython-311/Bio/Align copying Bio/Align/mauve.py -> build/lib.linux-x86_64-cpython-311/Bio/Align copying Bio/Align/maf.py -> build/lib.linux-x86_64-cpython-311/Bio/Align copying Bio/Align/interfaces.py -> build/lib.linux-x86_64-cpython-311/Bio/Align copying Bio/Align/hhr.py -> build/lib.linux-x86_64-cpython-311/Bio/Align copying Bio/Align/fasta.py -> build/lib.linux-x86_64-cpython-311/Bio/Align copying Bio/Align/exonerate.py -> build/lib.linux-x86_64-cpython-311/Bio/Align copying Bio/Align/emboss.py -> build/lib.linux-x86_64-cpython-311/Bio/Align copying Bio/Align/clustal.py -> build/lib.linux-x86_64-cpython-311/Bio/Align copying Bio/Align/bigpsl.py -> build/lib.linux-x86_64-cpython-311/Bio/Align copying Bio/Align/bigmaf.py -> build/lib.linux-x86_64-cpython-311/Bio/Align copying Bio/Align/bigbed.py -> build/lib.linux-x86_64-cpython-311/Bio/Align copying Bio/Align/bed.py -> build/lib.linux-x86_64-cpython-311/Bio/Align copying Bio/Align/a2m.py -> build/lib.linux-x86_64-cpython-311/Bio/Align copying Bio/Align/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Align copying Bio/Align/AlignInfo.py -> build/lib.linux-x86_64-cpython-311/Bio/Align creating build/lib.linux-x86_64-cpython-311/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-x86_64-cpython-311/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-x86_64-cpython-311/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> build/lib.linux-x86_64-cpython-311/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-x86_64-cpython-311/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-x86_64-cpython-311/Bio/Align/Applications copying Bio/Align/Applications/_MSAProbs.py -> build/lib.linux-x86_64-cpython-311/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-x86_64-cpython-311/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-x86_64-cpython-311/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> build/lib.linux-x86_64-cpython-311/Bio/Align/Applications creating build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices creating build/lib.linux-x86_64-cpython-311/Bio/AlignIO copying Bio/AlignIO/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-x86_64-cpython-311/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-x86_64-cpython-311/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-x86_64-cpython-311/Bio/AlignIO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-x86_64-cpython-311/Bio/AlignIO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-x86_64-cpython-311/Bio/AlignIO copying Bio/AlignIO/MafIO.py -> build/lib.linux-x86_64-cpython-311/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-x86_64-cpython-311/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-x86_64-cpython-311/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-x86_64-cpython-311/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-x86_64-cpython-311/Bio/AlignIO creating build/lib.linux-x86_64-cpython-311/Bio/Alphabet copying Bio/Alphabet/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Alphabet creating build/lib.linux-x86_64-cpython-311/Bio/Application copying Bio/Application/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Application creating build/lib.linux-x86_64-cpython-311/Bio/Blast copying Bio/Blast/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Blast copying Bio/Blast/Record.py -> build/lib.linux-x86_64-cpython-311/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> build/lib.linux-x86_64-cpython-311/Bio/Blast copying Bio/Blast/NCBIXML.py -> build/lib.linux-x86_64-cpython-311/Bio/Blast copying Bio/Blast/NCBIWWW.py -> build/lib.linux-x86_64-cpython-311/Bio/Blast copying Bio/Blast/Applications.py -> build/lib.linux-x86_64-cpython-311/Bio/Blast creating build/lib.linux-x86_64-cpython-311/Bio/CAPS copying Bio/CAPS/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/CAPS creating build/lib.linux-x86_64-cpython-311/Bio/Cluster copying Bio/Cluster/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Cluster creating build/lib.linux-x86_64-cpython-311/Bio/codonalign copying Bio/codonalign/codonseq.py -> build/lib.linux-x86_64-cpython-311/Bio/codonalign copying Bio/codonalign/codonalignment.py -> build/lib.linux-x86_64-cpython-311/Bio/codonalign copying Bio/codonalign/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/codonalign creating build/lib.linux-x86_64-cpython-311/Bio/Compass copying Bio/Compass/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Compass creating build/lib.linux-x86_64-cpython-311/Bio/Data copying Bio/Data/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Data copying Bio/Data/SCOPData.py -> build/lib.linux-x86_64-cpython-311/Bio/Data copying Bio/Data/PDBData.py -> build/lib.linux-x86_64-cpython-311/Bio/Data copying Bio/Data/IUPACData.py -> build/lib.linux-x86_64-cpython-311/Bio/Data copying Bio/Data/CodonTable.py -> build/lib.linux-x86_64-cpython-311/Bio/Data creating build/lib.linux-x86_64-cpython-311/Bio/Emboss copying Bio/Emboss/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-x86_64-cpython-311/Bio/Emboss copying Bio/Emboss/Primer3.py -> build/lib.linux-x86_64-cpython-311/Bio/Emboss copying Bio/Emboss/Applications.py -> build/lib.linux-x86_64-cpython-311/Bio/Emboss creating build/lib.linux-x86_64-cpython-311/Bio/Entrez copying Bio/Entrez/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Entrez copying Bio/Entrez/Parser.py -> build/lib.linux-x86_64-cpython-311/Bio/Entrez creating build/lib.linux-x86_64-cpython-311/Bio/ExPASy copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-x86_64-cpython-311/Bio/ExPASy copying Bio/ExPASy/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-x86_64-cpython-311/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> build/lib.linux-x86_64-cpython-311/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> build/lib.linux-x86_64-cpython-311/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> build/lib.linux-x86_64-cpython-311/Bio/ExPASy creating build/lib.linux-x86_64-cpython-311/Bio/GenBank copying Bio/GenBank/utils.py -> build/lib.linux-x86_64-cpython-311/Bio/GenBank copying Bio/GenBank/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/GenBank copying Bio/GenBank/Scanner.py -> build/lib.linux-x86_64-cpython-311/Bio/GenBank copying Bio/GenBank/Record.py -> build/lib.linux-x86_64-cpython-311/Bio/GenBank creating build/lib.linux-x86_64-cpython-311/Bio/Geo copying Bio/Geo/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Geo copying Bio/Geo/Record.py -> build/lib.linux-x86_64-cpython-311/Bio/Geo creating build/lib.linux-x86_64-cpython-311/Bio/Graphics copying Bio/Graphics/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics copying Bio/Graphics/Distribution.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics copying Bio/Graphics/Comparative.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics creating build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram creating build/lib.linux-x86_64-cpython-311/Bio/HMM copying Bio/HMM/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/HMM copying Bio/HMM/Utilities.py -> build/lib.linux-x86_64-cpython-311/Bio/HMM copying Bio/HMM/Trainer.py -> build/lib.linux-x86_64-cpython-311/Bio/HMM copying Bio/HMM/MarkovModel.py -> build/lib.linux-x86_64-cpython-311/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-x86_64-cpython-311/Bio/HMM creating build/lib.linux-x86_64-cpython-311/Bio/KEGG copying Bio/KEGG/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/KEGG copying Bio/KEGG/REST.py -> build/lib.linux-x86_64-cpython-311/Bio/KEGG creating build/lib.linux-x86_64-cpython-311/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/KEGG/Compound creating build/lib.linux-x86_64-cpython-311/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/KEGG/Enzyme creating build/lib.linux-x86_64-cpython-311/Bio/KEGG/Gene copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/KEGG/Gene creating build/lib.linux-x86_64-cpython-311/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/KEGG/Map creating build/lib.linux-x86_64-cpython-311/Bio/PDB creating build/lib.linux-x86_64-cpython-311/Bio/PDB/mmtf copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB/mmtf copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB/mmtf copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB/mmtf creating build/lib.linux-x86_64-cpython-311/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-x86_64-cpython-311/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-x86_64-cpython-311/Bio/KEGG/KGML creating build/lib.linux-x86_64-cpython-311/Bio/Medline copying Bio/Medline/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Medline creating build/lib.linux-x86_64-cpython-311/Bio/motifs copying Bio/motifs/xms.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs copying Bio/motifs/transfac.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs copying Bio/motifs/thresholds.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs copying Bio/motifs/pfm.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs copying Bio/motifs/minimal.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs copying Bio/motifs/meme.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs copying Bio/motifs/matrix.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs copying Bio/motifs/mast.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs copying Bio/motifs/clusterbuster.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs copying Bio/motifs/alignace.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs copying Bio/motifs/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs creating build/lib.linux-x86_64-cpython-311/Bio/motifs/applications copying Bio/motifs/applications/_xxmotif.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs/applications copying Bio/motifs/applications/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs/applications creating build/lib.linux-x86_64-cpython-311/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs/jaspar creating build/lib.linux-x86_64-cpython-311/Bio/Nexus copying Bio/Nexus/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Nexus copying Bio/Nexus/Trees.py -> build/lib.linux-x86_64-cpython-311/Bio/Nexus copying Bio/Nexus/StandardData.py -> build/lib.linux-x86_64-cpython-311/Bio/Nexus copying Bio/Nexus/Nodes.py -> build/lib.linux-x86_64-cpython-311/Bio/Nexus copying Bio/Nexus/Nexus.py -> build/lib.linux-x86_64-cpython-311/Bio/Nexus creating build/lib.linux-x86_64-cpython-311/Bio/NMR copying Bio/NMR/xpktools.py -> build/lib.linux-x86_64-cpython-311/Bio/NMR copying Bio/NMR/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/NMR copying Bio/NMR/NOEtools.py -> build/lib.linux-x86_64-cpython-311/Bio/NMR creating build/lib.linux-x86_64-cpython-311/Bio/Pathway copying Bio/Pathway/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Pathway creating build/lib.linux-x86_64-cpython-311/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-x86_64-cpython-311/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-x86_64-cpython-311/Bio/Pathway/Rep copying Bio/PDB/vectors.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/qcprot.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/mmcifio.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/internal_coords.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/ic_rebuild.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/ic_data.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/cealign.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/Superimposer.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/StructureBuilder.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/StructureAlignment.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/Structure.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/Selection.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/SCADIO.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/SASA.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/ResidueDepth.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/Residue.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/Polypeptide.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/PSEA.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/PICIO.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/PDBParser.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/PDBList.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/PDBIO.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/PDBExceptions.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/NeighborSearch.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/NACCESS.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/Model.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/MMCIFParser.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/HSExposure.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/FragmentMapper.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/Entity.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/Dice.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/DSSP.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/Chain.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/Atom.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB creating build/lib.linux-x86_64-cpython-311/Bio/phenotype copying Bio/phenotype/pm_fitting.py -> build/lib.linux-x86_64-cpython-311/Bio/phenotype copying Bio/phenotype/phen_micro.py -> build/lib.linux-x86_64-cpython-311/Bio/phenotype copying Bio/phenotype/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/phenotype creating build/lib.linux-x86_64-cpython-311/Bio/PopGen copying Bio/PopGen/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/PopGen creating build/lib.linux-x86_64-cpython-311/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-x86_64-cpython-311/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-x86_64-cpython-311/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-x86_64-cpython-311/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> build/lib.linux-x86_64-cpython-311/Bio/PopGen/GenePop creating build/lib.linux-x86_64-cpython-311/Bio/Restriction copying Bio/Restriction/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-x86_64-cpython-311/Bio/Restriction copying Bio/Restriction/Restriction.py -> build/lib.linux-x86_64-cpython-311/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> build/lib.linux-x86_64-cpython-311/Bio/Restriction creating build/lib.linux-x86_64-cpython-311/Bio/SCOP copying Bio/SCOP/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/SCOP copying Bio/SCOP/Residues.py -> build/lib.linux-x86_64-cpython-311/Bio/SCOP copying Bio/SCOP/Raf.py -> build/lib.linux-x86_64-cpython-311/Bio/SCOP copying Bio/SCOP/Hie.py -> build/lib.linux-x86_64-cpython-311/Bio/SCOP copying Bio/SCOP/Dom.py -> build/lib.linux-x86_64-cpython-311/Bio/SCOP copying Bio/SCOP/Des.py -> build/lib.linux-x86_64-cpython-311/Bio/SCOP copying Bio/SCOP/Cla.py -> build/lib.linux-x86_64-cpython-311/Bio/SCOP creating build/lib.linux-x86_64-cpython-311/Bio/SearchIO copying Bio/SearchIO/_utils.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO copying Bio/SearchIO/_index.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO copying Bio/SearchIO/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO creating build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/ParserSupport.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/NCBIStandalone.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_legacy creating build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_model creating build/lib.linux-x86_64-cpython-311/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_text.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/BlastIO creating build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HHsuiteIO creating build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HmmerIO creating build/lib.linux-x86_64-cpython-311/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/ExonerateIO creating build/lib.linux-x86_64-cpython-311/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/InterproscanIO creating build/lib.linux-x86_64-cpython-311/Bio/SeqIO copying Bio/SeqIO/_index.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO copying Bio/SeqIO/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO copying Bio/SeqIO/NibIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO copying Bio/SeqIO/GckIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO creating build/lib.linux-x86_64-cpython-311/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqUtils creating build/lib.linux-x86_64-cpython-311/Bio/Sequencing copying Bio/Sequencing/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Sequencing copying Bio/Sequencing/Phd.py -> build/lib.linux-x86_64-cpython-311/Bio/Sequencing copying Bio/Sequencing/Ace.py -> build/lib.linux-x86_64-cpython-311/Bio/Sequencing creating build/lib.linux-x86_64-cpython-311/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_samtools.py -> build/lib.linux-x86_64-cpython-311/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_bwa.py -> build/lib.linux-x86_64-cpython-311/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.linux-x86_64-cpython-311/Bio/Sequencing/Applications creating build/lib.linux-x86_64-cpython-311/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/SVDSuperimposer creating build/lib.linux-x86_64-cpython-311/Bio/PDB/QCPSuperimposer copying Bio/PDB/QCPSuperimposer/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB/QCPSuperimposer creating build/lib.linux-x86_64-cpython-311/Bio/SwissProt copying Bio/SwissProt/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> build/lib.linux-x86_64-cpython-311/Bio/SwissProt creating build/lib.linux-x86_64-cpython-311/Bio/TogoWS copying Bio/TogoWS/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/TogoWS creating build/lib.linux-x86_64-cpython-311/Bio/Phylo copying Bio/Phylo/_utils.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo copying Bio/Phylo/_io.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo copying Bio/Phylo/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo copying Bio/Phylo/NexusIO.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo copying Bio/Phylo/NewickIO.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo copying Bio/Phylo/Newick.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo copying Bio/Phylo/NeXML.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo copying Bio/Phylo/Consensus.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo copying Bio/Phylo/CDAO.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo copying Bio/Phylo/BaseTree.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo creating build/lib.linux-x86_64-cpython-311/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Raxml.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Fasttree.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo/Applications creating build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML creating build/lib.linux-x86_64-cpython-311/Bio/UniGene copying Bio/UniGene/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/UniGene creating build/lib.linux-x86_64-cpython-311/Bio/UniProt copying Bio/UniProt/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/UniProt copying Bio/UniProt/GOA.py -> build/lib.linux-x86_64-cpython-311/Bio/UniProt creating build/lib.linux-x86_64-cpython-311/Bio/Wise copying Bio/Wise/psw.py -> build/lib.linux-x86_64-cpython-311/Bio/Wise copying Bio/Wise/dnal.py -> build/lib.linux-x86_64-cpython-311/Bio/Wise copying Bio/Wise/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Wise creating build/lib.linux-x86_64-cpython-311/BioSQL copying BioSQL/__init__.py -> build/lib.linux-x86_64-cpython-311/BioSQL copying BioSQL/Loader.py -> build/lib.linux-x86_64-cpython-311/BioSQL copying BioSQL/DBUtils.py -> build/lib.linux-x86_64-cpython-311/BioSQL copying BioSQL/BioSeqDatabase.py -> build/lib.linux-x86_64-cpython-311/BioSQL copying BioSQL/BioSeq.py -> build/lib.linux-x86_64-cpython-311/BioSQL running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.DTDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.DTDs' to be distributed and are already explicitly excluding 'Bio.Entrez.DTDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.XSDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.XSDs' to be distributed and are already explicitly excluding 'Bio.Entrez.XSDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying Bio/cpairwise2module.c -> build/lib.linux-x86_64-cpython-311/Bio copying Bio/Align/_aligners.c -> build/lib.linux-x86_64-cpython-311/Bio/Align creating build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Cluster/cluster.c -> build/lib.linux-x86_64-cpython-311/Bio/Cluster copying Bio/Cluster/cluster.h -> build/lib.linux-x86_64-cpython-311/Bio/Cluster copying Bio/Cluster/clustermodule.c -> build/lib.linux-x86_64-cpython-311/Bio/Cluster creating build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-link1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-list1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-math1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-para1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-references1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-section1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_all.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivearticle.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_090910.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_101123.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/einfo.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink_020122.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/epost.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esearch.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary-v1.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary_gene.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3-qname1.mod -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs creating build/lib.linux-x86_64-cpython-311/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/XSDs copying Bio/motifs/_pwm.c -> build/lib.linux-x86_64-cpython-311/Bio/motifs copying Bio/Nexus/cnexus.c -> build/lib.linux-x86_64-cpython-311/Bio/Nexus copying Bio/PDB/ccealignmodule.c -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/PDB/kdtrees.c -> build/lib.linux-x86_64-cpython-311/Bio/PDB copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO copying Bio/PDB/QCPSuperimposer/qcprotmodule.c -> build/lib.linux-x86_64-cpython-311/Bio/PDB/QCPSuperimposer running build_ext building 'Bio.Align._aligners' extension creating build/temp.linux-x86_64-cpython-311 creating build/temp.linux-x86_64-cpython-311/Bio creating build/temp.linux-x86_64-cpython-311/Bio/Align gcc -DNDEBUG -g -fwrapv -O3 -Wall -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -ffat-lto-objects -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fPIC -I/usr/include/python3.11 -c Bio/Align/_aligners.c -o build/temp.linux-x86_64-cpython-311/Bio/Align/_aligners.o gcc -shared -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -flto=auto -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -flto=auto -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-cpython-311/Bio/Align/_aligners.o -L/usr/lib -o build/lib.linux-x86_64-cpython-311/Bio/Align/_aligners.cpython-311-x86_64-linux-gnu.so building 'Bio.cpairwise2' extension gcc -DNDEBUG -g -fwrapv -O3 -Wall -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -ffat-lto-objects -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fPIC -I/usr/include/python3.11 -c Bio/cpairwise2module.c -o build/temp.linux-x86_64-cpython-311/Bio/cpairwise2module.o Bio/cpairwise2module.c: In function ‘_get_match_score’: Bio/cpairwise2module.c:60:5: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations] 60 | if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist))) | ^~ In file included from /usr/include/python3.11/Python.h:95, from Bio/cpairwise2module.c:16: /usr/include/python3.11/ceval.h:27:43: note: declared here 27 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -shared -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -flto=auto -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -flto=auto -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-cpython-311/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-x86_64-cpython-311/Bio/cpairwise2.cpython-311-x86_64-linux-gnu.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-x86_64-cpython-311/Bio/Nexus gcc -DNDEBUG -g -fwrapv -O3 -Wall -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -ffat-lto-objects -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fPIC -I/usr/include/python3.11 -c Bio/Nexus/cnexus.c -o build/temp.linux-x86_64-cpython-311/Bio/Nexus/cnexus.o gcc -shared -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -flto=auto -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -flto=auto -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-cpython-311/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-x86_64-cpython-311/Bio/Nexus/cnexus.cpython-311-x86_64-linux-gnu.so building 'Bio.PDB.QCPSuperimposer.qcprotmodule' extension creating build/temp.linux-x86_64-cpython-311/Bio/PDB creating build/temp.linux-x86_64-cpython-311/Bio/PDB/QCPSuperimposer gcc -DNDEBUG -g -fwrapv -O3 -Wall -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -ffat-lto-objects -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fPIC -I/usr/include/python3.11 -c Bio/PDB/QCPSuperimposer/qcprotmodule.c -o build/temp.linux-x86_64-cpython-311/Bio/PDB/QCPSuperimposer/qcprotmodule.o gcc -shared -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -flto=auto -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -flto=auto -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-cpython-311/Bio/PDB/QCPSuperimposer/qcprotmodule.o -L/usr/lib -o build/lib.linux-x86_64-cpython-311/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-311-x86_64-linux-gnu.so building 'Bio.motifs._pwm' extension creating build/temp.linux-x86_64-cpython-311/Bio/motifs gcc -DNDEBUG -g -fwrapv -O3 -Wall -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -ffat-lto-objects -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fPIC -I/usr/include/python3.11 -c Bio/motifs/_pwm.c -o build/temp.linux-x86_64-cpython-311/Bio/motifs/_pwm.o gcc -shared -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -flto=auto -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -flto=auto -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-cpython-311/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-x86_64-cpython-311/Bio/motifs/_pwm.cpython-311-x86_64-linux-gnu.so building 'Bio.Cluster._cluster' extension creating build/temp.linux-x86_64-cpython-311/Bio/Cluster gcc -DNDEBUG -g -fwrapv -O3 -Wall -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -ffat-lto-objects -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fPIC -I/usr/include/python3.11 -c Bio/Cluster/cluster.c -o build/temp.linux-x86_64-cpython-311/Bio/Cluster/cluster.o gcc -DNDEBUG -g -fwrapv -O3 -Wall -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -ffat-lto-objects -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fPIC -I/usr/include/python3.11 -c Bio/Cluster/clustermodule.c -o build/temp.linux-x86_64-cpython-311/Bio/Cluster/clustermodule.o gcc -shared -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -flto=auto -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -flto=auto -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-cpython-311/Bio/Cluster/cluster.o build/temp.linux-x86_64-cpython-311/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-x86_64-cpython-311/Bio/Cluster/_cluster.cpython-311-x86_64-linux-gnu.so building 'Bio.PDB.kdtrees' extension gcc -DNDEBUG -g -fwrapv -O3 -Wall -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -ffat-lto-objects -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fPIC -I/usr/include/python3.11 -c Bio/PDB/kdtrees.c -o build/temp.linux-x86_64-cpython-311/Bio/PDB/kdtrees.o gcc -shared -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -flto=auto -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -flto=auto -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-cpython-311/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-x86_64-cpython-311/Bio/PDB/kdtrees.cpython-311-x86_64-linux-gnu.so building 'Bio.PDB.ccealign' extension gcc -DNDEBUG -g -fwrapv -O3 -Wall -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -ffat-lto-objects -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fPIC -I/usr/include/python3.11 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-x86_64-cpython-311/Bio/PDB/ccealignmodule.o gcc -shared -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -flto=auto -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -flto=auto -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-cpython-311/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-x86_64-cpython-311/Bio/PDB/ccealign.cpython-311-x86_64-linux-gnu.so building 'Bio.SeqIO._twoBitIO' extension creating build/temp.linux-x86_64-cpython-311/Bio/SeqIO gcc -DNDEBUG -g -fwrapv -O3 -Wall -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -ffat-lto-objects -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -march=x86-64 -mtune=generic -O3 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -g -ffile-prefix-map=/build/python/src=/usr/src/debug/python -flto=auto -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection -fPIC -I/usr/include/python3.11 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-x86_64-cpython-311/Bio/SeqIO/_twoBitIO.o gcc -shared -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -flto=auto -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -flto=auto -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-cpython-311/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-x86_64-cpython-311/Bio/SeqIO/_twoBitIO.cpython-311-x86_64-linux-gnu.so ==> Entering fakeroot environment... ==> Starting package()... running install /usr/lib/python3.11/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.DTDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.DTDs' to be distributed and are already explicitly excluding 'Bio.Entrez.DTDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.XSDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.XSDs' to be distributed and are already explicitly excluding 'Bio.Entrez.XSDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) running build_ext running install_lib creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11 creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/BioSQL copying build/lib.linux-x86_64-cpython-311/BioSQL/BioSeq.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/BioSQL copying build/lib.linux-x86_64-cpython-311/BioSQL/BioSeqDatabase.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/BioSQL copying build/lib.linux-x86_64-cpython-311/BioSQL/DBUtils.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/BioSQL copying build/lib.linux-x86_64-cpython-311/BioSQL/Loader.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/BioSQL copying build/lib.linux-x86_64-cpython-311/BioSQL/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/BioSQL creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio copying build/lib.linux-x86_64-cpython-311/Bio/cpairwise2.cpython-311-x86_64-linux-gnu.so -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio copying build/lib.linux-x86_64-cpython-311/Bio/cpairwise2module.c -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Wise copying build/lib.linux-x86_64-cpython-311/Bio/Wise/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Wise copying build/lib.linux-x86_64-cpython-311/Bio/Wise/dnal.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Wise copying build/lib.linux-x86_64-cpython-311/Bio/Wise/psw.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Wise creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/UniProt copying build/lib.linux-x86_64-cpython-311/Bio/UniProt/GOA.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/UniProt copying build/lib.linux-x86_64-cpython-311/Bio/UniProt/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/UniProt creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/UniGene copying build/lib.linux-x86_64-cpython-311/Bio/UniGene/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/UniGene creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML/_paml.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML/_parse_baseml.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML/_parse_codeml.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML/_parse_yn00.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML/baseml.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML/chi2.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML/codeml.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML/yn00.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/PAML creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/Applications copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/Applications/_Fasttree.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/Applications copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/Applications/_Phyml.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/Applications copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/Applications/_Raxml.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/Applications copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/Applications/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/Applications copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/BaseTree.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/CDAO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/CDAOIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/Consensus.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/NeXML.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/NeXMLIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/Newick.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/NewickIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/NexusIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/PhyloXML.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/PhyloXMLIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/TreeConstruction.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/_cdao_owl.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/_io.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/_utils.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/TogoWS copying build/lib.linux-x86_64-cpython-311/Bio/TogoWS/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/TogoWS creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SwissProt copying build/lib.linux-x86_64-cpython-311/Bio/SwissProt/KeyWList.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SwissProt copying build/lib.linux-x86_64-cpython-311/Bio/SwissProt/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SwissProt creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SVDSuperimposer copying build/lib.linux-x86_64-cpython-311/Bio/SVDSuperimposer/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SVDSuperimposer creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Sequencing creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Sequencing/Applications copying build/lib.linux-x86_64-cpython-311/Bio/Sequencing/Applications/_Novoalign.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Sequencing/Applications copying build/lib.linux-x86_64-cpython-311/Bio/Sequencing/Applications/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Sequencing/Applications copying build/lib.linux-x86_64-cpython-311/Bio/Sequencing/Applications/_bwa.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Sequencing/Applications copying build/lib.linux-x86_64-cpython-311/Bio/Sequencing/Applications/_samtools.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Sequencing/Applications copying build/lib.linux-x86_64-cpython-311/Bio/Sequencing/Ace.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Sequencing copying build/lib.linux-x86_64-cpython-311/Bio/Sequencing/Phd.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Sequencing copying build/lib.linux-x86_64-cpython-311/Bio/Sequencing/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Sequencing creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqUtils copying build/lib.linux-x86_64-cpython-311/Bio/SeqUtils/CheckSum.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqUtils copying build/lib.linux-x86_64-cpython-311/Bio/SeqUtils/CodonUsage.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqUtils copying build/lib.linux-x86_64-cpython-311/Bio/SeqUtils/CodonUsageIndices.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqUtils copying build/lib.linux-x86_64-cpython-311/Bio/SeqUtils/IsoelectricPoint.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqUtils copying build/lib.linux-x86_64-cpython-311/Bio/SeqUtils/MeltingTemp.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqUtils copying build/lib.linux-x86_64-cpython-311/Bio/SeqUtils/ProtParam.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqUtils copying build/lib.linux-x86_64-cpython-311/Bio/SeqUtils/ProtParamData.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqUtils copying build/lib.linux-x86_64-cpython-311/Bio/SeqUtils/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqUtils copying build/lib.linux-x86_64-cpython-311/Bio/SeqUtils/lcc.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqUtils creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/_twoBitIO.cpython-311-x86_64-linux-gnu.so -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/_twoBitIO.c -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/AbiIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/AceIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/FastaIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/GckIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/IgIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/InsdcIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/Interfaces.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/NibIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/PdbIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/PhdIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/PirIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/QualityIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/SeqXmlIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/SffIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/SnapGeneIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/SwissIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/TabIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/TwoBitIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/UniprotIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/XdnaIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/_index.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/InterproscanIO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/InterproscanIO/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/InterproscanIO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/InterproscanIO creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/ExonerateIO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/ExonerateIO/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/ExonerateIO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/ExonerateIO/_base.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/ExonerateIO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/ExonerateIO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/ExonerateIO/exonerate_text.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/ExonerateIO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/ExonerateIO creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HmmerIO/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HmmerIO/_base.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HmmerIO/hmmer2_text.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HmmerIO/hmmer3_text.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/HmmerIO creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/HHsuiteIO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HHsuiteIO/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/HHsuiteIO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/HHsuiteIO creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/BlastIO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/BlastIO/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/BlastIO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/BlastIO/blast_tab.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/BlastIO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/BlastIO/blast_text.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/BlastIO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/BlastIO/blast_xml.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/BlastIO creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/_model copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_model/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/_model copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_model/_base.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/_model copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_model/hit.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/_model copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_model/hsp.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/_model copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_model/query.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/_model creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/_legacy copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_legacy/NCBIStandalone.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/_legacy copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_legacy/ParserSupport.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/_legacy copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_legacy/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/_legacy copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/BlatIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/FastaIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_index.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_utils.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SCOP copying build/lib.linux-x86_64-cpython-311/Bio/SCOP/Cla.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SCOP copying build/lib.linux-x86_64-cpython-311/Bio/SCOP/Des.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SCOP copying build/lib.linux-x86_64-cpython-311/Bio/SCOP/Dom.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SCOP copying build/lib.linux-x86_64-cpython-311/Bio/SCOP/Hie.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SCOP copying build/lib.linux-x86_64-cpython-311/Bio/SCOP/Raf.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SCOP copying build/lib.linux-x86_64-cpython-311/Bio/SCOP/Residues.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SCOP copying build/lib.linux-x86_64-cpython-311/Bio/SCOP/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SCOP creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Restriction copying build/lib.linux-x86_64-cpython-311/Bio/Restriction/PrintFormat.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Restriction copying build/lib.linux-x86_64-cpython-311/Bio/Restriction/Restriction.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Restriction copying build/lib.linux-x86_64-cpython-311/Bio/Restriction/Restriction_Dictionary.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Restriction copying build/lib.linux-x86_64-cpython-311/Bio/Restriction/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Restriction creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PopGen creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PopGen/GenePop copying build/lib.linux-x86_64-cpython-311/Bio/PopGen/GenePop/Controller.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PopGen/GenePop copying build/lib.linux-x86_64-cpython-311/Bio/PopGen/GenePop/EasyController.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PopGen/GenePop copying build/lib.linux-x86_64-cpython-311/Bio/PopGen/GenePop/FileParser.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PopGen/GenePop copying build/lib.linux-x86_64-cpython-311/Bio/PopGen/GenePop/LargeFileParser.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PopGen/GenePop copying build/lib.linux-x86_64-cpython-311/Bio/PopGen/GenePop/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PopGen/GenePop copying build/lib.linux-x86_64-cpython-311/Bio/PopGen/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PopGen creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/phenotype copying build/lib.linux-x86_64-cpython-311/Bio/phenotype/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/phenotype copying build/lib.linux-x86_64-cpython-311/Bio/phenotype/phen_micro.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/phenotype copying build/lib.linux-x86_64-cpython-311/Bio/phenotype/pm_fitting.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/phenotype creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Pathway creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Pathway/Rep copying build/lib.linux-x86_64-cpython-311/Bio/Pathway/Rep/Graph.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Pathway/Rep copying build/lib.linux-x86_64-cpython-311/Bio/Pathway/Rep/MultiGraph.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Pathway/Rep copying build/lib.linux-x86_64-cpython-311/Bio/Pathway/Rep/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Pathway/Rep copying build/lib.linux-x86_64-cpython-311/Bio/Pathway/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Pathway creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/NMR copying build/lib.linux-x86_64-cpython-311/Bio/NMR/NOEtools.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/NMR copying build/lib.linux-x86_64-cpython-311/Bio/NMR/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/NMR copying build/lib.linux-x86_64-cpython-311/Bio/NMR/xpktools.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/NMR creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Nexus copying build/lib.linux-x86_64-cpython-311/Bio/Nexus/cnexus.cpython-311-x86_64-linux-gnu.so -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Nexus copying build/lib.linux-x86_64-cpython-311/Bio/Nexus/cnexus.c -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Nexus copying build/lib.linux-x86_64-cpython-311/Bio/Nexus/Nexus.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Nexus copying build/lib.linux-x86_64-cpython-311/Bio/Nexus/Nodes.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Nexus copying build/lib.linux-x86_64-cpython-311/Bio/Nexus/StandardData.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Nexus copying build/lib.linux-x86_64-cpython-311/Bio/Nexus/Trees.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Nexus copying build/lib.linux-x86_64-cpython-311/Bio/Nexus/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Nexus creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs copying build/lib.linux-x86_64-cpython-311/Bio/motifs/_pwm.cpython-311-x86_64-linux-gnu.so -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs copying build/lib.linux-x86_64-cpython-311/Bio/motifs/_pwm.c -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs/jaspar copying build/lib.linux-x86_64-cpython-311/Bio/motifs/jaspar/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs/jaspar copying build/lib.linux-x86_64-cpython-311/Bio/motifs/jaspar/db.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs/jaspar creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs/applications copying build/lib.linux-x86_64-cpython-311/Bio/motifs/applications/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs/applications copying build/lib.linux-x86_64-cpython-311/Bio/motifs/applications/_xxmotif.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs/applications copying build/lib.linux-x86_64-cpython-311/Bio/motifs/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs copying build/lib.linux-x86_64-cpython-311/Bio/motifs/alignace.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs copying build/lib.linux-x86_64-cpython-311/Bio/motifs/clusterbuster.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs copying build/lib.linux-x86_64-cpython-311/Bio/motifs/mast.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs copying build/lib.linux-x86_64-cpython-311/Bio/motifs/matrix.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs copying build/lib.linux-x86_64-cpython-311/Bio/motifs/meme.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs copying build/lib.linux-x86_64-cpython-311/Bio/motifs/minimal.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs copying build/lib.linux-x86_64-cpython-311/Bio/motifs/pfm.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs copying build/lib.linux-x86_64-cpython-311/Bio/motifs/thresholds.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs copying build/lib.linux-x86_64-cpython-311/Bio/motifs/transfac.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs copying build/lib.linux-x86_64-cpython-311/Bio/motifs/xms.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Medline copying build/lib.linux-x86_64-cpython-311/Bio/Medline/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Medline creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/ccealign.cpython-311-x86_64-linux-gnu.so -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/kdtrees.cpython-311-x86_64-linux-gnu.so -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/kdtrees.c -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/ccealignmodule.c -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/QCPSuperimposer copying build/lib.linux-x86_64-cpython-311/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-311-x86_64-linux-gnu.so -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/QCPSuperimposer copying build/lib.linux-x86_64-cpython-311/Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/QCPSuperimposer copying build/lib.linux-x86_64-cpython-311/Bio/PDB/QCPSuperimposer/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/QCPSuperimposer copying build/lib.linux-x86_64-cpython-311/Bio/PDB/AbstractPropertyMap.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/Atom.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/Chain.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/DSSP.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/Dice.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/Entity.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/FragmentMapper.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/HSExposure.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/MMCIF2Dict.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/MMCIFParser.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/Model.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/NACCESS.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/NeighborSearch.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/PDBExceptions.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/PDBIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/PDBList.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/PDBParser.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/PICIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/PSEA.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/Polypeptide.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/Residue.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/ResidueDepth.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/SASA.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/SCADIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/Selection.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/Structure.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/StructureAlignment.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/StructureBuilder.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/Superimposer.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/cealign.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/ic_data.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/ic_rebuild.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/internal_coords.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/mmcifio.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/parse_pdb_header.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/qcprot.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB copying build/lib.linux-x86_64-cpython-311/Bio/PDB/vectors.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/mmtf copying build/lib.linux-x86_64-cpython-311/Bio/PDB/mmtf/DefaultParser.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/mmtf copying build/lib.linux-x86_64-cpython-311/Bio/PDB/mmtf/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/mmtf copying build/lib.linux-x86_64-cpython-311/Bio/PDB/mmtf/mmtfio.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/mmtf creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/KEGG creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/KEGG/KGML copying build/lib.linux-x86_64-cpython-311/Bio/KEGG/KGML/KGML_parser.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/KEGG/KGML copying build/lib.linux-x86_64-cpython-311/Bio/KEGG/KGML/KGML_pathway.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/KEGG/KGML copying build/lib.linux-x86_64-cpython-311/Bio/KEGG/KGML/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/KEGG/KGML creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/KEGG/Map copying build/lib.linux-x86_64-cpython-311/Bio/KEGG/Map/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/KEGG/Map creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/KEGG/Gene copying build/lib.linux-x86_64-cpython-311/Bio/KEGG/Gene/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/KEGG/Gene creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/KEGG/Enzyme copying build/lib.linux-x86_64-cpython-311/Bio/KEGG/Enzyme/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/KEGG/Enzyme creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/KEGG/Compound copying build/lib.linux-x86_64-cpython-311/Bio/KEGG/Compound/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/KEGG/Compound copying build/lib.linux-x86_64-cpython-311/Bio/KEGG/REST.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/KEGG copying build/lib.linux-x86_64-cpython-311/Bio/KEGG/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/KEGG creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/HMM copying build/lib.linux-x86_64-cpython-311/Bio/HMM/DynamicProgramming.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/HMM copying build/lib.linux-x86_64-cpython-311/Bio/HMM/MarkovModel.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/HMM copying build/lib.linux-x86_64-cpython-311/Bio/HMM/Trainer.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/HMM copying build/lib.linux-x86_64-cpython-311/Bio/HMM/Utilities.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/HMM copying build/lib.linux-x86_64-cpython-311/Bio/HMM/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/HMM creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram/_Colors.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram/_CrossLink.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram/_Diagram.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram/_Feature.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram/_Graph.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram/_GraphSet.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram/_Track.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/BasicChromosome.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/ColorSpiral.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/Comparative.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/DisplayRepresentation.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/Distribution.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/KGML_vis.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Geo copying build/lib.linux-x86_64-cpython-311/Bio/Geo/Record.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Geo copying build/lib.linux-x86_64-cpython-311/Bio/Geo/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Geo creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/GenBank copying build/lib.linux-x86_64-cpython-311/Bio/GenBank/Record.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/GenBank copying build/lib.linux-x86_64-cpython-311/Bio/GenBank/Scanner.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/GenBank copying build/lib.linux-x86_64-cpython-311/Bio/GenBank/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/GenBank copying build/lib.linux-x86_64-cpython-311/Bio/GenBank/utils.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/GenBank creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/ExPASy copying build/lib.linux-x86_64-cpython-311/Bio/ExPASy/Enzyme.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/ExPASy copying build/lib.linux-x86_64-cpython-311/Bio/ExPASy/Prodoc.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/ExPASy copying build/lib.linux-x86_64-cpython-311/Bio/ExPASy/Prosite.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/ExPASy copying build/lib.linux-x86_64-cpython-311/Bio/ExPASy/ScanProsite.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/ExPASy copying build/lib.linux-x86_64-cpython-311/Bio/ExPASy/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/ExPASy copying build/lib.linux-x86_64-cpython-311/Bio/ExPASy/cellosaurus.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/ExPASy creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/XSDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/XSDs/IPGReportSet.xsd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/XSDs creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/xmlspecchars.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/xhtml-table-1.mod -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/taxon.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/section.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/references.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pubmed_190101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pubmed_180601.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pubmed_180101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pubmed_150101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pubmed_140101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pubmed_130501.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pubmed_130101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pubmed_120101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pubmed_110101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pubmed_100301.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pubmed_100101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pubmed_090101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pubmed_080101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pubmed_020114.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pmc-1.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/phrase.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/para.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/notat.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmserials_100101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmserials_080101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/modules.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/mmlextra.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/mmlalias.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/mathmlsetup.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/mathml3.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/mathml3-qname1.mod -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/mathml2.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/mathml2-qname-1.mod -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/math.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/list.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/link.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/journalmeta.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isotech.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isopub.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isonum.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isomscr.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isomopf.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isomfrk.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isolat2.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isolat1.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isogrk4.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isogrk3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isogrk2.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isogrk1.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isodia.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isocyr2.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isocyr1.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isobox.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isoamsr.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isoamso.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isoamsn.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isoamsc.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isoamsb.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isoamsa.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/htmltable.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/format.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/esummary_gene.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/esummary-v1.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/esearch.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/epost.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/elink_020122.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/elink.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/einfo.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/egquery.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/eSummary_041029.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/eSpell.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/eSearch_020511.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/ePost_020511.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/eLink_101123.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/eLink_090910.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/eInfo_020511.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/display.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/default-mixes.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/default-classes.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/common.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/chars.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/bookdoc_150101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/bookdoc_140101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/bookdoc_130101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/bookdoc_120101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/bookdoc_110101.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/bookdoc_100301.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/backmatter.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/articlemeta.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/archivecustom-modules.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/archivecustom-models.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/archivecustom-mixes.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/archivecustom-classes.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/archivearticle.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/SP_General.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/SP_General.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/PRF_General.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/PRF_General.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/PIR_General.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/PIR_General.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/PDB_General.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/PDB_General.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/OMSSA.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/OMSSA.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NSE.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NSE.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_all.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Variation.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Systems.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Submit.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Remap.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_RNA.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Pub.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Protein.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Project.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Organism.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Mime.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Mim.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Medline.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_General.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Gene.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Access.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/MMDB_Features.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/MMDB.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/MMDB.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-section1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-references1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-para1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-notat1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-modules1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-math1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-list1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-link1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-funding1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-format1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-display1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-common1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-chars1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/HomoloGene.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/GenBank_General.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/EMBL_General.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/Docsum_3_4.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/Docsum_3_3.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/Docsum_3_2.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/Docsum_3_1.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/Docsum_3_0.dtd -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/BITS-question-answer2.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/Parser.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Emboss copying build/lib.linux-x86_64-cpython-311/Bio/Emboss/Applications.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Emboss copying build/lib.linux-x86_64-cpython-311/Bio/Emboss/Primer3.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Emboss copying build/lib.linux-x86_64-cpython-311/Bio/Emboss/PrimerSearch.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Emboss copying build/lib.linux-x86_64-cpython-311/Bio/Emboss/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Emboss creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Data copying build/lib.linux-x86_64-cpython-311/Bio/Data/CodonTable.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Data copying build/lib.linux-x86_64-cpython-311/Bio/Data/IUPACData.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Data copying build/lib.linux-x86_64-cpython-311/Bio/Data/PDBData.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Data copying build/lib.linux-x86_64-cpython-311/Bio/Data/SCOPData.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Data copying build/lib.linux-x86_64-cpython-311/Bio/Data/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Data creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Compass copying build/lib.linux-x86_64-cpython-311/Bio/Compass/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Compass creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/codonalign copying build/lib.linux-x86_64-cpython-311/Bio/codonalign/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/codonalign copying build/lib.linux-x86_64-cpython-311/Bio/codonalign/codonalignment.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/codonalign copying build/lib.linux-x86_64-cpython-311/Bio/codonalign/codonseq.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/codonalign creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Cluster copying build/lib.linux-x86_64-cpython-311/Bio/Cluster/_cluster.cpython-311-x86_64-linux-gnu.so -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Cluster copying build/lib.linux-x86_64-cpython-311/Bio/Cluster/clustermodule.c -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Cluster copying build/lib.linux-x86_64-cpython-311/Bio/Cluster/cluster.h -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Cluster copying build/lib.linux-x86_64-cpython-311/Bio/Cluster/cluster.c -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Cluster copying build/lib.linux-x86_64-cpython-311/Bio/Cluster/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Cluster creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/CAPS copying build/lib.linux-x86_64-cpython-311/Bio/CAPS/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/CAPS creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Blast copying build/lib.linux-x86_64-cpython-311/Bio/Blast/Applications.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Blast copying build/lib.linux-x86_64-cpython-311/Bio/Blast/NCBIWWW.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Blast copying build/lib.linux-x86_64-cpython-311/Bio/Blast/NCBIXML.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Blast copying build/lib.linux-x86_64-cpython-311/Bio/Blast/ParseBlastTable.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Blast copying build/lib.linux-x86_64-cpython-311/Bio/Blast/Record.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Blast copying build/lib.linux-x86_64-cpython-311/Bio/Blast/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Blast creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Application copying build/lib.linux-x86_64-cpython-311/Bio/Application/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Application creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Alphabet copying build/lib.linux-x86_64-cpython-311/Bio/Alphabet/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Alphabet creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/AlignIO copying build/lib.linux-x86_64-cpython-311/Bio/AlignIO/ClustalIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/AlignIO copying build/lib.linux-x86_64-cpython-311/Bio/AlignIO/EmbossIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/AlignIO copying build/lib.linux-x86_64-cpython-311/Bio/AlignIO/FastaIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/AlignIO copying build/lib.linux-x86_64-cpython-311/Bio/AlignIO/Interfaces.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/AlignIO copying build/lib.linux-x86_64-cpython-311/Bio/AlignIO/MafIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/AlignIO copying build/lib.linux-x86_64-cpython-311/Bio/AlignIO/MauveIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/AlignIO copying build/lib.linux-x86_64-cpython-311/Bio/AlignIO/MsfIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/AlignIO copying build/lib.linux-x86_64-cpython-311/Bio/AlignIO/NexusIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/AlignIO copying build/lib.linux-x86_64-cpython-311/Bio/AlignIO/PhylipIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/AlignIO copying build/lib.linux-x86_64-cpython-311/Bio/AlignIO/StockholmIO.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/AlignIO copying build/lib.linux-x86_64-cpython-311/Bio/AlignIO/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/AlignIO creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align copying build/lib.linux-x86_64-cpython-311/Bio/Align/_aligners.cpython-311-x86_64-linux-gnu.so -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align copying build/lib.linux-x86_64-cpython-311/Bio/Align/_aligners.c -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/TRANS -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/STR -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/SCHNEIDER -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/RISLER -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/RAO -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/PAM70 -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/PAM30 -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/PAM250 -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/NUC.4.4 -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/MEGABLAST -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/MDM78 -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/MCLACHLAN -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/LEVIN -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/JONES -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/JOHNSON -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/HOXD70 -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/GONNET1992 -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/GENETIC -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/FENG -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/DAYHOFF -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/BLOSUM90 -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/BLOSUM80 -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/BLOSUM62 -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/BLOSUM50 -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/BLOSUM45 -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/BLASTP -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/BLASTN -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/BENNER74 -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/BENNER6 -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/BENNER22 -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/Applications copying build/lib.linux-x86_64-cpython-311/Bio/Align/Applications/_ClustalOmega.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/Applications copying build/lib.linux-x86_64-cpython-311/Bio/Align/Applications/_Clustalw.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/Applications copying build/lib.linux-x86_64-cpython-311/Bio/Align/Applications/_Dialign.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/Applications copying build/lib.linux-x86_64-cpython-311/Bio/Align/Applications/_MSAProbs.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/Applications copying build/lib.linux-x86_64-cpython-311/Bio/Align/Applications/_Mafft.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/Applications copying build/lib.linux-x86_64-cpython-311/Bio/Align/Applications/_Muscle.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/Applications copying build/lib.linux-x86_64-cpython-311/Bio/Align/Applications/_Prank.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/Applications copying build/lib.linux-x86_64-cpython-311/Bio/Align/Applications/_Probcons.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/Applications copying build/lib.linux-x86_64-cpython-311/Bio/Align/Applications/_TCoffee.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/Applications copying build/lib.linux-x86_64-cpython-311/Bio/Align/Applications/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/Applications copying build/lib.linux-x86_64-cpython-311/Bio/Align/AlignInfo.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align copying build/lib.linux-x86_64-cpython-311/Bio/Align/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align copying build/lib.linux-x86_64-cpython-311/Bio/Align/a2m.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align copying build/lib.linux-x86_64-cpython-311/Bio/Align/bed.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align copying build/lib.linux-x86_64-cpython-311/Bio/Align/bigbed.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align copying build/lib.linux-x86_64-cpython-311/Bio/Align/bigmaf.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align copying build/lib.linux-x86_64-cpython-311/Bio/Align/bigpsl.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align copying build/lib.linux-x86_64-cpython-311/Bio/Align/clustal.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align copying build/lib.linux-x86_64-cpython-311/Bio/Align/emboss.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align copying build/lib.linux-x86_64-cpython-311/Bio/Align/exonerate.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align copying build/lib.linux-x86_64-cpython-311/Bio/Align/fasta.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align copying build/lib.linux-x86_64-cpython-311/Bio/Align/hhr.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align copying build/lib.linux-x86_64-cpython-311/Bio/Align/interfaces.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align copying build/lib.linux-x86_64-cpython-311/Bio/Align/maf.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align copying build/lib.linux-x86_64-cpython-311/Bio/Align/mauve.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align copying build/lib.linux-x86_64-cpython-311/Bio/Align/msf.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align copying build/lib.linux-x86_64-cpython-311/Bio/Align/nexus.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align copying build/lib.linux-x86_64-cpython-311/Bio/Align/phylip.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align copying build/lib.linux-x86_64-cpython-311/Bio/Align/psl.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align copying build/lib.linux-x86_64-cpython-311/Bio/Align/sam.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align copying build/lib.linux-x86_64-cpython-311/Bio/Align/stockholm.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align copying build/lib.linux-x86_64-cpython-311/Bio/Align/tabular.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align creating /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Affy copying build/lib.linux-x86_64-cpython-311/Bio/Affy/CelFile.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Affy copying build/lib.linux-x86_64-cpython-311/Bio/Affy/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Affy copying build/lib.linux-x86_64-cpython-311/Bio/File.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio copying build/lib.linux-x86_64-cpython-311/Bio/LogisticRegression.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio copying build/lib.linux-x86_64-cpython-311/Bio/MarkovModel.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio copying build/lib.linux-x86_64-cpython-311/Bio/MaxEntropy.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio copying build/lib.linux-x86_64-cpython-311/Bio/NaiveBayes.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio copying build/lib.linux-x86_64-cpython-311/Bio/Seq.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio copying build/lib.linux-x86_64-cpython-311/Bio/SeqFeature.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio copying build/lib.linux-x86_64-cpython-311/Bio/SeqRecord.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio copying build/lib.linux-x86_64-cpython-311/Bio/__init__.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio copying build/lib.linux-x86_64-cpython-311/Bio/_utils.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio copying build/lib.linux-x86_64-cpython-311/Bio/bgzf.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio copying build/lib.linux-x86_64-cpython-311/Bio/kNN.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio copying build/lib.linux-x86_64-cpython-311/Bio/pairwise2.py -> /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/BioSQL/BioSeq.py to BioSeq.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/BioSQL/BioSeqDatabase.py to BioSeqDatabase.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/BioSQL/DBUtils.py to DBUtils.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/BioSQL/Loader.py to Loader.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/BioSQL/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Wise/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Wise/dnal.py to dnal.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Wise/psw.py to psw.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/UniProt/GOA.py to GOA.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/UniProt/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/UniGene/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/PAML/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/PAML/_paml.py to _paml.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/PAML/_parse_baseml.py to _parse_baseml.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/PAML/_parse_codeml.py to _parse_codeml.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/PAML/_parse_yn00.py to _parse_yn00.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/PAML/baseml.py to baseml.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/PAML/chi2.py to chi2.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/PAML/codeml.py to codeml.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/PAML/yn00.py to yn00.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/Applications/_Fasttree.py to _Fasttree.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/Applications/_Phyml.py to _Phyml.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/Applications/_Raxml.py to _Raxml.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/Applications/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/BaseTree.py to BaseTree.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/CDAO.py to CDAO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/CDAOIO.py to CDAOIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/Consensus.py to Consensus.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/NeXML.py to NeXML.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/NeXMLIO.py to NeXMLIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/Newick.py to Newick.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/NewickIO.py to NewickIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/NexusIO.py to NexusIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/PhyloXML.py to PhyloXML.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/PhyloXMLIO.py to PhyloXMLIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/TreeConstruction.py to TreeConstruction.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/_cdao_owl.py to _cdao_owl.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/_io.py to _io.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Phylo/_utils.py to _utils.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/TogoWS/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SwissProt/KeyWList.py to KeyWList.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SwissProt/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SVDSuperimposer/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Sequencing/Applications/_Novoalign.py to _Novoalign.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Sequencing/Applications/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Sequencing/Applications/_bwa.py to _bwa.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Sequencing/Applications/_samtools.py to _samtools.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Sequencing/Ace.py to Ace.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Sequencing/Phd.py to Phd.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Sequencing/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqUtils/CheckSum.py to CheckSum.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqUtils/CodonUsage.py to CodonUsage.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqUtils/CodonUsageIndices.py to CodonUsageIndices.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqUtils/IsoelectricPoint.py to IsoelectricPoint.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqUtils/MeltingTemp.py to MeltingTemp.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqUtils/ProtParam.py to ProtParam.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqUtils/ProtParamData.py to ProtParamData.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqUtils/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqUtils/lcc.py to lcc.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO/AbiIO.py to AbiIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO/AceIO.py to AceIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO/FastaIO.py to FastaIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO/GckIO.py to GckIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO/IgIO.py to IgIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO/InsdcIO.py to InsdcIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO/Interfaces.py to Interfaces.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO/NibIO.py to NibIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO/PdbIO.py to PdbIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO/PhdIO.py to PhdIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO/PirIO.py to PirIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO/QualityIO.py to QualityIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO/SeqXmlIO.py to SeqXmlIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO/SffIO.py to SffIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO/SnapGeneIO.py to SnapGeneIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO/SwissIO.py to SwissIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO/TabIO.py to TabIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO/TwoBitIO.py to TwoBitIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO/UniprotIO.py to UniprotIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO/XdnaIO.py to XdnaIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqIO/_index.py to _index.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/InterproscanIO/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/InterproscanIO/interproscan_xml.py to interproscan_xml.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/ExonerateIO/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/ExonerateIO/_base.py to _base.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/ExonerateIO/exonerate_cigar.py to exonerate_cigar.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/ExonerateIO/exonerate_text.py to exonerate_text.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py to exonerate_vulgar.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/HmmerIO/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/HmmerIO/_base.py to _base.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/HmmerIO/hmmer2_text.py to hmmer2_text.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/HmmerIO/hmmer3_domtab.py to hmmer3_domtab.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/HmmerIO/hmmer3_tab.py to hmmer3_tab.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/HmmerIO/hmmer3_text.py to hmmer3_text.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/HHsuiteIO/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py to hhsuite2_text.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/BlastIO/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/BlastIO/blast_tab.py to blast_tab.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/BlastIO/blast_text.py to blast_text.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/BlastIO/blast_xml.py to blast_xml.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/_model/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/_model/_base.py to _base.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/_model/hit.py to hit.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/_model/hsp.py to hsp.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/_model/query.py to query.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/_legacy/NCBIStandalone.py to NCBIStandalone.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/_legacy/ParserSupport.py to ParserSupport.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/_legacy/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/BlatIO.py to BlatIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/FastaIO.py to FastaIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/_index.py to _index.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SearchIO/_utils.py to _utils.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SCOP/Cla.py to Cla.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SCOP/Des.py to Des.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SCOP/Dom.py to Dom.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SCOP/Hie.py to Hie.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SCOP/Raf.py to Raf.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SCOP/Residues.py to Residues.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SCOP/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Restriction/PrintFormat.py to PrintFormat.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Restriction/Restriction.py to Restriction.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Restriction/Restriction_Dictionary.py to Restriction_Dictionary.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Restriction/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PopGen/GenePop/Controller.py to Controller.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PopGen/GenePop/EasyController.py to EasyController.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PopGen/GenePop/FileParser.py to FileParser.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PopGen/GenePop/LargeFileParser.py to LargeFileParser.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PopGen/GenePop/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PopGen/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/phenotype/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/phenotype/phen_micro.py to phen_micro.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/phenotype/pm_fitting.py to pm_fitting.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Pathway/Rep/Graph.py to Graph.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Pathway/Rep/MultiGraph.py to MultiGraph.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Pathway/Rep/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Pathway/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/NMR/NOEtools.py to NOEtools.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/NMR/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/NMR/xpktools.py to xpktools.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Nexus/Nexus.py to Nexus.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Nexus/Nodes.py to Nodes.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Nexus/StandardData.py to StandardData.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Nexus/Trees.py to Trees.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Nexus/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs/jaspar/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs/jaspar/db.py to db.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs/applications/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs/applications/_xxmotif.py to _xxmotif.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs/alignace.py to alignace.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs/clusterbuster.py to clusterbuster.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs/mast.py to mast.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs/matrix.py to matrix.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs/meme.py to meme.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs/minimal.py to minimal.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs/pfm.py to pfm.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs/thresholds.py to thresholds.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs/transfac.py to transfac.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/motifs/xms.py to xms.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Medline/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/QCPSuperimposer/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/AbstractPropertyMap.py to AbstractPropertyMap.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/Atom.py to Atom.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/Chain.py to Chain.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/DSSP.py to DSSP.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/Dice.py to Dice.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/Entity.py to Entity.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/FragmentMapper.py to FragmentMapper.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/HSExposure.py to HSExposure.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/MMCIF2Dict.py to MMCIF2Dict.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/MMCIFParser.py to MMCIFParser.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/Model.py to Model.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/NACCESS.py to NACCESS.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/NeighborSearch.py to NeighborSearch.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/PDBExceptions.py to PDBExceptions.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/PDBIO.py to PDBIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/PDBList.py to PDBList.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/PDBParser.py to PDBParser.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/PICIO.py to PICIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/PSEA.py to PSEA.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/Polypeptide.py to Polypeptide.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/Residue.py to Residue.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/ResidueDepth.py to ResidueDepth.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/SASA.py to SASA.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/SCADIO.py to SCADIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/Selection.py to Selection.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/Structure.py to Structure.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/StructureAlignment.py to StructureAlignment.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/StructureBuilder.py to StructureBuilder.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/Superimposer.py to Superimposer.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/cealign.py to cealign.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/ic_data.py to ic_data.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/ic_rebuild.py to ic_rebuild.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/internal_coords.py to internal_coords.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/mmcifio.py to mmcifio.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/parse_pdb_header.py to parse_pdb_header.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/qcprot.py to qcprot.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/vectors.py to vectors.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/mmtf/DefaultParser.py to DefaultParser.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/mmtf/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/PDB/mmtf/mmtfio.py to mmtfio.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/KEGG/KGML/KGML_parser.py to KGML_parser.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/KEGG/KGML/KGML_pathway.py to KGML_pathway.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/KEGG/KGML/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/KEGG/Map/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/KEGG/Gene/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/KEGG/Enzyme/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/KEGG/Compound/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/KEGG/REST.py to REST.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/KEGG/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/HMM/DynamicProgramming.py to DynamicProgramming.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/HMM/MarkovModel.py to MarkovModel.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/HMM/Trainer.py to Trainer.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/HMM/Utilities.py to Utilities.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/HMM/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py to _AbstractDrawer.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py to _CircularDrawer.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram/_Colors.py to _Colors.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram/_CrossLink.py to _CrossLink.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram/_Diagram.py to _Diagram.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram/_Feature.py to _Feature.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.py to _FeatureSet.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram/_Graph.py to _Graph.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py to _GraphSet.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py to _LinearDrawer.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram/_Track.py to _Track.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/BasicChromosome.py to BasicChromosome.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/ColorSpiral.py to ColorSpiral.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/Comparative.py to Comparative.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/DisplayRepresentation.py to DisplayRepresentation.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/Distribution.py to Distribution.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/KGML_vis.py to KGML_vis.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Graphics/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Geo/Record.py to Record.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Geo/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/GenBank/Record.py to Record.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/GenBank/Scanner.py to Scanner.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/GenBank/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/GenBank/utils.py to utils.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/ExPASy/Enzyme.py to Enzyme.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/ExPASy/Prodoc.py to Prodoc.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/ExPASy/Prosite.py to Prosite.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/ExPASy/ScanProsite.py to ScanProsite.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/ExPASy/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/ExPASy/cellosaurus.py to cellosaurus.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/Parser.py to Parser.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Entrez/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Emboss/Applications.py to Applications.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Emboss/Primer3.py to Primer3.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Emboss/PrimerSearch.py to PrimerSearch.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Emboss/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Data/CodonTable.py to CodonTable.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Data/IUPACData.py to IUPACData.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Data/PDBData.py to PDBData.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Data/SCOPData.py to SCOPData.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Data/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Compass/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/codonalign/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/codonalign/codonalignment.py to codonalignment.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/codonalign/codonseq.py to codonseq.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Cluster/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/CAPS/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Blast/Applications.py to Applications.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Blast/NCBIWWW.py to NCBIWWW.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Blast/NCBIXML.py to NCBIXML.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Blast/ParseBlastTable.py to ParseBlastTable.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Blast/Record.py to Record.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Blast/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Application/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Alphabet/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/AlignIO/ClustalIO.py to ClustalIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/AlignIO/EmbossIO.py to EmbossIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/AlignIO/FastaIO.py to FastaIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/AlignIO/Interfaces.py to Interfaces.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/AlignIO/MafIO.py to MafIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/AlignIO/MauveIO.py to MauveIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/AlignIO/MsfIO.py to MsfIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/AlignIO/NexusIO.py to NexusIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/AlignIO/PhylipIO.py to PhylipIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/AlignIO/StockholmIO.py to StockholmIO.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/AlignIO/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/substitution_matrices/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/Applications/_ClustalOmega.py to _ClustalOmega.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/Applications/_Clustalw.py to _Clustalw.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/Applications/_Dialign.py to _Dialign.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/Applications/_MSAProbs.py to _MSAProbs.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/Applications/_Mafft.py to _Mafft.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/Applications/_Muscle.py to _Muscle.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/Applications/_Prank.py to _Prank.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/Applications/_Probcons.py to _Probcons.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/Applications/_TCoffee.py to _TCoffee.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/Applications/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/AlignInfo.py to AlignInfo.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/a2m.py to a2m.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/bed.py to bed.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/bigbed.py to bigbed.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/bigmaf.py to bigmaf.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/bigpsl.py to bigpsl.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/clustal.py to clustal.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/emboss.py to emboss.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/exonerate.py to exonerate.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/fasta.py to fasta.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/hhr.py to hhr.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/interfaces.py to interfaces.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/maf.py to maf.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/mauve.py to mauve.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/msf.py to msf.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/nexus.py to nexus.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/phylip.py to phylip.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/psl.py to psl.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/sam.py to sam.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/stockholm.py to stockholm.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Align/tabular.py to tabular.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Affy/CelFile.py to CelFile.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Affy/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/File.py to File.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/LogisticRegression.py to LogisticRegression.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/MarkovModel.py to MarkovModel.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/MaxEntropy.py to MaxEntropy.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/NaiveBayes.py to NaiveBayes.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/Seq.py to Seq.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqFeature.py to SeqFeature.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/SeqRecord.py to SeqRecord.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/__init__.py to __init__.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/_utils.py to _utils.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/bgzf.py to bgzf.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/kNN.py to kNN.cpython-311.pyc byte-compiling /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/Bio/pairwise2.py to pairwise2.cpython-311.pyc running install_egg_info Copying biopython.egg-info to /tmp/archlinux-ci/python-biopython-archlinuxrb-build-mGwqkTUY/python-biopython/trunk/pkg/python-biopython/usr/lib/python3.11/site-packages/biopython-1.81-py3.11.egg-info running install_scripts ==> Tidying install... -> Removing libtool files... -> Purging unwanted files... -> Removing static library files... -> Stripping unneeded symbols from binaries and libraries... -> Compressing man and info pages... ==> Checking for packaging issues... ==> Creating package "python-biopython"... -> Generating .PKGINFO file... -> Generating .BUILDINFO file... -> Adding changelog file... -> Generating .MTREE file... -> Compressing package... ==> Leaving fakeroot environment. ==> Finished making: python-biopython 1.81-2 (Thu Aug 29 13:31:21 2024)