==> Cloning biodiff ... Cloning into 'biodiff'... ==> Collecting packager identity from makepkg.conf -> name : Reproducible Arch Linux tests -> email : reproducible@archlinux.org -> gpg-key : undefined -> protocol: https ==> Configuring biodiff :: Synchronizing package databases... % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 129k 100 129k 0 0 761k 0 --:--:-- --:--:-- --:--:-- 759k 100 129k 100 129k 0 0 761k 0 --:--:-- --:--:-- --:--:-- 759k % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 8536k 100 8536k 0 0 21.6M 0 --:--:-- --:--:-- --:--:-- 21.7M % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 139k 100 139k 0 0 409k 0 --:--:-- --:--:-- --:--:-- 410k :: Starting full system upgrade... there is nothing to do PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp/archlinux-ci/ SOURCE_DATE_EPOCH=1709417137 SHELL=/bin/bash SCHROOT_CHROOT_NAME=jenkins-reproducible-archlinux no_proxy=localhost,127.0.0.1 SCHROOT_COMMAND=bash -l -c SOURCE_DATE_EPOCH='1709417137' PATH='/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin' TMPDIR='/tmp/archlinux-ci/' printenv 2>&1 SCHROOT_SESSION_ID=archlinux-biodiff-archlinuxrb-build-paXibWvV PWD=/tmp/archlinux-ci/biodiff-archlinuxrb-build-paXibWvV/biodiff LOGNAME=jenkins SCHROOT_ALIAS_NAME=jenkins-reproducible-archlinux SCHROOT_GROUP=jenkins SCHROOT_USER=jenkins ftp_proxy=http://127.0.0.1:3128 HOME=/var/lib/jenkins LANG=C https_proxy=http://127.0.0.1:3128 USER=jenkins FTP_PROXY=http://127.0.0.1:3128 SHLVL=1 HTTPS_PROXY=http://127.0.0.1:3128 HTTP_PROXY=http://127.0.0.1:3128 SCHROOT_GID=116 http_proxy=http://127.0.0.1:3128 DEBUGINFOD_URLS=https://debuginfod.archlinux.org SCHROOT_UID=108 HG=/usr/bin/hg _=/usr/sbin/printenv ==> Making package: biodiff 1.1.0-3 (Sat Mar 2 22:05:55 2024) ==> Checking runtime dependencies... ==> Checking buildtime dependencies... ==> Installing missing dependencies... :: There are 2 providers available for cargo: :: Repository extra 1) rust 2) rustup Enter a number (default=1): resolving dependencies... looking for conflicting packages... Packages (2) llvm-libs-16.0.6-1 rust-1:1.76.0-1 Total Download Size: 92.11 MiB Total Installed Size: 394.41 MiB :: Proceed with installation? [Y/n] :: Retrieving packages... % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 31.2M 100 31.2M 0 0 194M 0 --:--:-- --:--:-- --:--:-- 195M % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 36 60.8M 36 21.9M 0 0 127M 0 --:--:-- --:--:-- --:--:-- 127M 100 60.8M 100 60.8M 0 0 154M 0 --:--:-- --:--:-- --:--:-- 153M checking keyring... checking package integrity... loading package files... checking for file conflicts... checking available disk space... :: Processing package changes... installing llvm-libs... installing rust... Optional dependencies for rust gdb: rust-gdb script lldb: rust-lldb script :: Running post-transaction hooks... (1/1) Arming ConditionNeedsUpdate... ==> Retrieving sources... -> Downloading biodiff-1.1.0.tar.gz... % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 13162 0 13162 0 0 46679 0 --:--:-- --:--:-- --:--:-- 46679 100 76703 0 76703 0 0 254k 0 --:--:-- --:--:-- --:--:-- 5170k ==> Validating source files with sha256sums... biodiff-1.1.0.tar.gz ... Passed ==> Extracting sources... -> Extracting biodiff-1.1.0.tar.gz with bsdtar ==> Starting prepare()... Updating crates.io index Downloading crates ... Downloaded num-iter v0.1.43 Downloaded memchr v2.5.0 Downloaded signal-hook-registry v1.4.0 Downloaded syn v1.0.107 Downloaded bytecount v0.6.3 Downloaded anyhow v1.0.69 Downloaded derive-new v0.5.9 Downloaded csv v1.1.6 Downloaded time v0.3.17 Downloaded bio-types v0.13.0 Downloaded enum-map-derive v0.6.0 Downloaded enum-map v1.1.1 Downloaded triple_accel v0.4.0 Downloaded darling_macro v0.14.3 Downloaded ordered-float v3.4.0 Downloaded enum-map v2.4.2 Downloaded darling v0.14.3 Downloaded cursive_buffered_backend v0.6.1 Downloaded wide v0.7.6 Downloaded getrandom v0.2.8 Downloaded lock_api v0.4.9 Downloaded darling_core v0.14.3 Downloaded rustfft v6.1.0 Downloaded itertools-num v0.1.3 Downloaded bytemuck v1.13.0 Downloaded itoa v1.0.5 Downloaded libc v0.2.139 Downloaded regex v1.7.1 Downloaded bio v1.1.0 Downloaded itertools v0.10.5 Downloaded safe_arch v0.6.0 Downloaded time-macros v0.2.6 Downloaded memmap2 v0.5.8 Downloaded ryu v1.0.12 Downloaded bit-set v0.5.3 Downloaded feature-probe v0.1.1 Downloaded itoa v0.4.8 Downloaded fxhash v0.2.1 Downloaded proc-macro-error v1.0.4 Downloaded getset v0.1.2 Downloaded fixedbitset v0.4.2 Downloaded indexmap v1.9.2 Downloaded petgraph v0.6.3 Downloaded rawpointer v0.2.1 Downloaded nalgebra-macros v0.1.0 Downloaded rand_distr v0.4.3 Downloaded approx v0.5.1 Downloaded paste v1.0.11 Downloaded nalgebra v0.29.0 Downloaded rand_chacha v0.3.1 Downloaded rand v0.8.5 Downloaded statrs v0.16.0 Downloaded strum v0.24.1 Downloaded heck v0.4.1 Downloaded rustversion v1.0.11 Downloaded vec_map v0.8.2 Downloaded bitflags v1.3.2 Downloaded scopeguard v1.1.0 Downloaded mio v0.8.5 Downloaded signal-hook-mio v0.2.3 Downloaded crossterm v0.25.0 Downloaded signal-hook v0.3.14 Downloaded cursive v0.20.0 Downloaded crossbeam-utils v0.8.14 Downloaded crossbeam-channel v0.5.6 Downloaded enum-map-derive v0.11.0 Downloaded num-rational v0.4.1 Downloaded stable_deref_trait v1.2.0 Downloaded owning_ref v0.4.1 Downloaded fnv v1.0.7 Downloaded bv v0.11.1 Downloaded byteorder v1.4.3 Downloaded ndarray v0.15.6 Downloaded newtype_derive v0.1.6 Downloaded matrixmultiply v0.3.2 Downloaded typenum v1.16.0 Downloaded ppv-lite86 v0.2.17 Downloaded strum_macros v0.24.3 Downloaded thiserror-impl v1.0.38 Downloaded thiserror v1.0.38 Downloaded parking_lot_core v0.9.7 Downloaded parking_lot v0.12.1 Downloaded once_cell v1.17.0 Downloaded ahash v0.8.3 Downloaded lazy_static v1.4.0 Downloaded num_threads v0.1.6 Downloaded xi-unicode v0.3.0 Downloaded cursive_core v0.3.7 Downloaded ident_case v1.0.1 Downloaded enumset_derive v0.6.1 Downloaded enumset v1.0.12 Downloaded cfg-if v1.0.0 Downloaded log v0.4.17 Downloaded aho-corasick v0.7.20 Downloaded regex-syntax v0.6.28 Downloaded regex-automata v0.1.10 Downloaded csv-core v0.1.10 Downloaded custom_derive v0.1.7 Downloaded proc-macro-error-attr v1.0.4 Downloaded either v1.8.1 Downloaded multimap v0.8.3 Downloaded rustc_version v0.1.7 Downloaded hashbrown v0.12.3 Downloaded simba v0.6.0 Downloaded rand_core v0.6.4 Downloaded smallvec v1.10.0 Downloaded dirs-sys v0.3.7 Downloaded dirs v4.0.0 Downloaded hex v0.4.3 Downloaded num-complex v0.4.3 Downloaded autocfg v1.1.0 Downloaded libm v0.2.6 Downloaded num-traits v0.2.15 Downloaded num-integer v0.1.45 Downloaded version_check v0.9.4 Downloaded serde_derive v1.0.152 Downloaded serde_json v1.0.93 Downloaded unicode-segmentation v1.10.1 Downloaded serde v1.0.152 Downloaded unicode-ident v1.0.6 Downloaded transpose v0.2.2 Downloaded bit-vec v0.6.3 Downloaded bstr v0.2.17 Downloaded semver v0.1.20 Downloaded num v0.4.0 Downloaded time-core v0.1.0 Downloaded primal-check v0.3.3 Downloaded strength_reduce v0.2.4 Downloaded realfft v3.2.0 Downloaded quote v1.0.23 Downloaded proc-macro2 v1.0.51 Downloaded unicode-width v0.1.10 ==> Starting build()... Compiling autocfg v1.1.0 Compiling proc-macro2 v1.0.51 Compiling quote v1.0.23 Compiling unicode-ident v1.0.6 Compiling syn v1.0.107 Compiling libc v0.2.139 Compiling libm v0.2.6 Compiling cfg-if v1.0.0 Compiling version_check v0.9.4 Compiling memchr v2.5.0 Compiling serde_derive v1.0.152 Compiling serde v1.0.152 Compiling fnv v1.0.7 Compiling log v0.4.17 Compiling ident_case v1.0.1 Compiling lazy_static v1.4.0 Compiling crossbeam-utils v0.8.14 Compiling paste v1.0.11 Compiling ppv-lite86 v0.2.17 Compiling bytemuck v1.13.0 Compiling rustversion v1.0.11 Compiling safe_arch v0.6.0 Compiling itoa v1.0.5 Compiling typenum v1.16.0 Compiling parking_lot_core v0.9.7 Compiling semver v0.1.20 Compiling rawpointer v0.2.1 Compiling smallvec v1.10.0 Compiling signal-hook v0.3.14 Compiling matrixmultiply v0.3.2 Compiling rustc_version v0.1.7 Compiling stable_deref_trait v1.2.0 Compiling feature-probe v0.1.1 Compiling proc-macro-error-attr v1.0.4 Compiling ahash v0.8.3 Compiling proc-macro-error v1.0.4 Compiling regex-syntax v0.6.28 Compiling num-traits v0.2.15 Compiling num-integer v0.1.45 Compiling num-rational v0.4.1 Compiling num-iter v0.1.43 Compiling lock_api v0.4.9 Compiling aho-corasick v0.7.20 Compiling getrandom v0.2.8 Compiling signal-hook-registry v1.4.0 Compiling wide v0.7.6 Compiling indexmap v1.9.2 Compiling rand_core v0.6.4 Compiling once_cell v1.17.0 Compiling time-core v0.1.0 Compiling scopeguard v1.1.0 Compiling thiserror v1.0.38 Compiling num_threads v0.1.6 Compiling time v0.3.17 Compiling rand_chacha v0.3.1 Compiling rand v0.8.5 Compiling mio v0.8.5 Compiling num-complex v0.4.3 Compiling approx v0.5.1 Compiling crossbeam-channel v0.5.6 Compiling regex v1.7.1 Compiling rand_distr v0.4.3 Compiling newtype_derive v0.1.6 Compiling simba v0.6.0 Compiling num v0.4.0 Compiling bv v0.11.1 Compiling owning_ref v0.4.1 Compiling rustfft v6.1.0 Compiling anyhow v1.0.69 Compiling strength_reduce v0.2.4 Compiling unicode-width v0.1.10 Compiling xi-unicode v0.3.0 Compiling ryu v1.0.12 Compiling heck v0.4.1 Compiling regex-automata v0.1.10 Compiling unicode-segmentation v1.10.1 Compiling hashbrown v0.12.3 Compiling transpose v0.2.2 Compiling primal-check v0.3.3 Compiling darling_core v0.14.3 Compiling parking_lot v0.12.1 Compiling signal-hook-mio v0.2.3 Compiling csv-core v0.1.10 Compiling byteorder v1.4.3 Compiling bitflags v1.3.2 Compiling serde_json v1.0.93 Compiling either v1.8.1 Compiling bit-vec v0.6.3 Compiling itoa v0.4.8 Compiling fixedbitset v0.4.2 Compiling bit-set v0.5.3 Compiling fxhash v0.2.1 Compiling itertools v0.10.5 Compiling crossterm v0.25.0 Compiling petgraph v0.6.3 Compiling ndarray v0.15.6 Compiling ordered-float v3.4.0 Compiling itertools-num v0.1.3 Compiling dirs-sys v0.3.7 Compiling strum v0.24.1 Compiling custom_derive v0.1.7 Compiling triple_accel v0.4.0 Compiling bytecount v0.6.3 Compiling dirs v4.0.0 Compiling hexagex v0.2.2 (/tmp/archlinux-ci/biodiff-archlinuxrb-build-paXibWvV/biodiff/src/biodiff-1.1.0/hexagex) Compiling memmap2 v0.5.8 Compiling darling_macro v0.14.3 Compiling enum-map-derive v0.11.0 Compiling nalgebra-macros v0.1.0 Compiling thiserror-impl v1.0.38 Compiling enum-map-derive v0.6.0 Compiling derive-new v0.5.9 Compiling strum_macros v0.24.3 Compiling enum-map v1.1.1 Compiling getset v0.1.2 Compiling nalgebra v0.29.0 Compiling darling v0.14.3 Compiling enum-map v2.4.2 Compiling enumset_derive v0.6.1 Compiling realfft v3.2.0 Compiling enumset v1.0.12 Compiling cursive_core v0.3.7 Compiling bio-types v0.13.0 Compiling cursive v0.20.0 Compiling cursive_buffered_backend v0.6.1 Compiling bstr v0.2.17 Compiling vec_map v0.8.2 Compiling multimap v0.8.3 Compiling csv v1.1.6 Compiling statrs v0.16.0 Compiling bio v1.1.0 Compiling biodiff v1.1.0 (/tmp/archlinux-ci/biodiff-archlinuxrb-build-paXibWvV/biodiff/src/biodiff-1.1.0) Finished release [optimized] target(s) in 1m 47s ==> Entering fakeroot environment... ==> Starting package()... ==> Tidying install... -> Removing libtool files... -> Purging unwanted files... -> Removing static library files... -> Stripping unneeded symbols from binaries and libraries... -> Compressing man and info pages... ==> Checking for packaging issues... ==> Creating package "biodiff"... -> Generating .PKGINFO file... -> Generating .BUILDINFO file... -> Generating .MTREE file... -> Compressing package... ==> Creating package "biodiff-debug"... -> Generating .PKGINFO file... -> Generating .BUILDINFO file... -> Generating .MTREE file... -> Compressing package... ==> Leaving fakeroot environment. ==> Finished making: biodiff 1.1.0-3 (Sat Mar 2 22:08:36 2024)