Sat May 25 10:11:21 UTC 2024 I: starting to build fenicsx-performance-tests/unstable/arm64 on jenkins on '2024-05-25 10:11' Sat May 25 10:11:21 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_18/42808/console.log Sat May 25 10:11:21 UTC 2024 I: Downloading source for unstable/fenicsx-performance-tests=0.8.0-1 --2024-05-25 10:11:22-- http://deb.debian.org/debian/pool/main/f/fenicsx-performance-tests/fenicsx-performance-tests_0.8.0-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2468 (2.4K) [text/prs.lines.tag] Saving to: ‘fenicsx-performance-tests_0.8.0-1.dsc’ 0K .. 100% 344M=0s 2024-05-25 10:11:22 (344 MB/s) - ‘fenicsx-performance-tests_0.8.0-1.dsc’ saved [2468/2468] Sat May 25 10:11:22 UTC 2024 I: fenicsx-performance-tests_0.8.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: fenicsx-performance-tests Binary: fenicsx-performance-tests, fenicsx-performance-tests-source Architecture: any all Version: 0.8.0-1 Maintainer: Debian Science Maintainers Uploaders: Drew Parsons , Francesco Ballarin Homepage: https://github.com/FEniCS/performance-test Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/science-team/fenics/fenicsx-performance-tests Vcs-Git: https://salsa.debian.org/science-team/fenics/fenicsx-performance-tests.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@ Build-Depends: debhelper-compat (= 13), cmake (>= 3.16~), libboost-dev (>= 1.70~), libdolfinx-dev (>= 1:0.8~), libdolfinx-real-dev, mpi-default-dev, python3-ffcx Package-List: fenicsx-performance-tests deb libdevel optional arch=any fenicsx-performance-tests-source deb libdevel optional arch=all Checksums-Sha1: be1bf1ce896b4ca9d8acc87fbd9abf39e73d80f8 19616 fenicsx-performance-tests_0.8.0.orig.tar.gz 924a1038f4e8bc13ae774c93988a7a1ec44d3305 6200 fenicsx-performance-tests_0.8.0-1.debian.tar.xz Checksums-Sha256: 64aad99dc3117d3c7e3b27b0e598367faa52b2e5486e6175b6e7a650926a14bd 19616 fenicsx-performance-tests_0.8.0.orig.tar.gz 0c6900afd28146a2a2164e41de2cfdb3855e9cb2cef9fb8f4b46cf36f32dbf2b 6200 fenicsx-performance-tests_0.8.0-1.debian.tar.xz Files: 76d9be118c6339058e05fdd5517a2a6a 19616 fenicsx-performance-tests_0.8.0.orig.tar.gz 4e4bd69bc567705ea81a42d8a2f46e31 6200 fenicsx-performance-tests_0.8.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEG10EseUHu/A2aeK4AfNfwz5zr4wFAmY2JSYACgkQAfNfwz5z r4zwPQ/+O3H1eOVubzK1oBkoqcELPKsT+iX3RzsvRVT2v30tvSc/VaRUFKc29Gvj 5q+FVHcrhTHX7m9nKoE8PcjC2Ov0TRmKcfAySEtRUQdQA4O+98VIrGbCUWvankqT zH9aVukI3zG17oAZryD+ozmEvNcArmVSwsuNIvuyuThjinpJZy4500bwG+VMllLv uTMELfFWKgi3nu4qtfJDCqO4Rtp+gByytLRSFTmTlqKufqmdcPYkBfTJiGZM/l6s /ldBB4hOUsPvCJYMOTEbuEhvh39mG8VwYUo/QNaVSwR04aCPncXNIUCLGPFfAamR 47ptS9sIOtXIMO/IuNw0/95UyV/7mjis9pvbz0guO0FCtJt4LIn010z9trYF/umR zFTtMtlEVdS51eL5MoHNMNY8PEyD75gPVln/0jUIng0ndiyqVORBJ78SDFMHl9Kc Ml7uNnFbggS1J2b7DN5E6Gmfo/CiQrIvQmYnkleK1LU22awVe1AHJt+zRJQ1WfDS 0IXVAmE981sGcU7M4cRu4pGjePb4E8Wr9ARov9fsNeLtuI432NGwOI+KBlz1fiGK z9puQPkP1YzMkiPXuTRYC9plzuwataR1BlLdjK6MGaoS79UlQ/vugfBDQZkMWKYE ArQ1qvbywmBcD5CiDaAPhti1HKdmPpWlBGiooOR0PbgIXNkq0Lw= =JdmW -----END PGP SIGNATURE----- Sat May 25 10:11:22 UTC 2024 I: Checking whether the package is not for us Sat May 25 10:11:22 UTC 2024 I: Starting 1st build on remote node codethink04-arm64.debian.net. Sat May 25 10:11:22 UTC 2024 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Sat May 25 10:14:03 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri May 24 22:11:24 -12 2024 I: pbuilder-time-stamp: 1716631884 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fenicsx-performance-tests_0.8.0-1.dsc] I: copying [./fenicsx-performance-tests_0.8.0.orig.tar.gz] I: copying [./fenicsx-performance-tests_0.8.0-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sat May 4 12:08:06 2024 gpgv: using RSA key 1B5D04B1E507BBF03669E2B801F35FC33E73AF8C gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fenicsx-performance-tests_0.8.0-1.dsc: no acceptable signature found dpkg-source: info: extracting fenicsx-performance-tests in fenicsx-performance-tests-0.8.0 dpkg-source: info: unpacking fenicsx-performance-tests_0.8.0.orig.tar.gz dpkg-source: info: unpacking fenicsx-performance-tests_0.8.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying enable_complex_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3926980/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='52c445399da04d819131f8c6f6a24665' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3926980' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bbQy526u/pbuilderrc_y9MA --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bbQy526u/b1 --logfile b1/build.log fenicsx-performance-tests_0.8.0-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 25 07:43 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3926980/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake (>= 3.16~), libboost-dev (>= 1.70~), libdolfinx-dev (>= 1:0.8~), libdolfinx-real-dev, mpi-default-dev, python3-ffcx dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19763 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake (>= 3.16~); however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev (>= 1.70~); however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfinx-dev (>= 1:0.8~); however: Package libdolfinx-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfinx-real-dev; however: Package libdolfinx-real-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ffcx; however: Package python3-ffcx is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-13{a} gfortran-13-aarch64-linux-gnu{a} gfortran-aarch64-linux-gnu{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} libadios2-common-c++11-dev{a} libadios2-common-core-dev{a} libadios2-mpi-auxiliary-2{a} libadios2-mpi-auxiliary-dev{a} libadios2-mpi-c++11-2{a} libadios2-mpi-c++11-dev{a} libadios2-mpi-core-2{a} libadios2-mpi-core-dev{a} libaec-dev{a} libaec0{a} libamd-comgr2{a} libamd3{a} libamdhip64-5{a} libarchive-zip-perl{a} libarchive13t64{a} libarpack2-dev{a} libarpack2t64{a} libbasix-dev{a} libbasix0.8{a} libblas-dev{a} libblas3{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono-dev{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-math-dev{a} libboost-math1.83-dev{a} libboost-math1.83.0{a} libboost-mpi-dev{a} libboost-mpi1.83-dev{a} libboost-mpi1.83.0{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization-dev{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost-timer-dev{a} libboost-timer1.83-dev{a} libboost-timer1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libbsd0{a} libbtf2{a} libc6-dbg{a} libcamd3{a} libcbor0.10{a} libccolamd3{a} libcholmod5{a} libcolamd3{a} libcom-err2{a} libcombblas2.0.0t64{a} libcurl4-openssl-dev{a} libcurl4t64{a} libcxsparse4{a} libdebhelper-perl{a} libdolfinx-dev{a} libdolfinx-real-dev{a} libdolfinx-real0.8{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm2{a} libedit2{a} libeigen3-dev{a} libelf1t64{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-dev{a} libevent-extra-2.1-7t64{a} libevent-openssl-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-mpi-dev{a} libfftw3-mpi3{a} libfftw3-single3{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgfortran-13-dev{a} libgfortran5{a} libgssapi-krb5-2{a} libhdf5-mpi-dev{a} libhdf5-openmpi-103-1t64{a} libhdf5-openmpi-cpp-103-1t64{a} libhdf5-openmpi-dev{a} libhdf5-openmpi-fortran-102t64{a} libhdf5-openmpi-hl-100t64{a} libhdf5-openmpi-hl-cpp-100t64{a} libhdf5-openmpi-hl-fortran-100t64{a} libhsa-runtime64-1{a} libhsakmt1{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libhypre-2.29.0{a} libhypre-dev{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu72{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libklu2{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} libldl3{a} libllvm17t64{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libmetis5{a} libmumps-5.6t64{a} libmumps-dev{a} libmumps-headers-dev{a} libmunge2{a} libnghttp2-14{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnorm1t64{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3t64{a} libparpack2-dev{a} libparpack2t64{a} libparu0{a} libpciaccess0{a} libpetsc-real3.20{a} libpetsc-real3.20-dev{a} libpetsc3.20-dev-common{a} libpgm-5.3-0t64{a} libpipeline1{a} libpkgconf3{a} libpmix-dev{a} libpmix2t64{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libptscotch-7.0{a} libptscotch-dev{a} libpugixml-dev{a} libpugixml1v5{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} librbio4{a} librdmacm1t64{a} libreadline8t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-mpi-dev{a} libscalapack-openmpi-dev{a} libscalapack-openmpi2.2{a} libscotch-7.0{a} libscotch-dev{a} libslepc-real3.20{a} libslepc-real3.20-dev{a} libsodium23{a} libspex3{a} libspqr4{a} libssh2-1t64{a} libssl-dev{a} libsuitesparse-dev{a} libsuitesparse-mongoose3{a} libsuitesparseconfig7{a} libsuperlu-dev{a} libsuperlu-dist-dev{a} libsuperlu-dist8{a} libsuperlu6{a} libsz2{a} libtool{a} libtrilinos-amesos-13.2{a} libtrilinos-aztecoo-13.2{a} libtrilinos-aztecoo-dev{a} libtrilinos-epetra-13.2{a} libtrilinos-epetraext-13.2{a} libtrilinos-galeri-13.2{a} libtrilinos-ifpack-13.2{a} libtrilinos-kokkos-13.2{a} libtrilinos-ml-13.2{a} libtrilinos-ml-dev{a} libtrilinos-teuchos-13.2{a} libtrilinos-trilinosss-13.2{a} libtrilinos-trilinosss-dev{a} libtrilinos-triutils-13.2{a} libtrilinos-zoltan-13.2{a} libtrilinos-zoltan-dev{a} libuchardet0{a} libucx0{a} libumfpack6{a} libuv1t64{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxml2{a} libxml2-dev{a} libxnvctrl0{a} libyaml-0-2{a} libyaml-cpp0.8{a} libyaml-dev{a} libz3-4{a} libzmq5{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} netbase{a} ocl-icd-libopencl1{a} ocl-icd-opencl-dev{a} opencl-c-headers{a} opencl-clhpp-headers{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-basix{a} python3-cffi{a} python3-cffi-backend{a} python3-dev{a} python3-distutils{a} python3-ffcx{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pkg-resources{a} python3-ply{a} python3-pycparser{a} python3-setuptools{a} python3-ufl{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} trilinos-dev{a} tzdata{a} valgrind{a} valgrind-mpi{a} x11proto-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl gdb gdb-minimal javascript-common krb5-locales ksh ksh93u+m libarchive-cpio-perl libcoarrays-openmpi-dev libgl-dev libgraphblas-dev libldap-common libmail-sendmail-perl libpetsc3.20-dev-examples libsasl2-modules lynx mksh psmisc publicsuffix python3-numba wget xauth zsh 0 packages upgraded, 319 newly installed, 0 to remove and 0 not upgraded. Need to get 242 MB of archives. After unpacking 1226 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.11-minimal arm64 3.11.9-1 [813 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.2-1 [88.7 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.11-minimal arm64 3.11.9-1 [1767 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-4 [157 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libpython3.11-stdlib arm64 3.11.9-1 [1775 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 python3.11 arm64 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-4 [61.7 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-4 [869 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.1-1 [93.2 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.12.1-1 [1394 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libbsd0 arm64 0.12.2-1 [129 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libedit2 arm64 3.1-20240517-1 [88.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libcbor0.10 arm64 0.10.2-1.2 [27.2 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libfido2-1 arm64 1.14.0-1+b2 [73.4 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.20.1-6+b1 [33.0 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.1-1 [22.8 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.20.1-6+b1 [80.5 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B] Get: 34 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.20.1-6+b1 [315 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.20.1-6+b1 [124 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 openssh-client arm64 1:9.7p1-5 [902 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.71-3 [332 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.21-14 [496 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg-1 [608 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.2-2 [321 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b3 [295 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-6 [20.1 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-6 [55.3 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libldap-2.5-0 arm64 2.5.17+dfsg-1 [173 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.61.0-1+b1 [71.0 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.0-5 [207 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.8.0-1 [411 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libjsoncpp25 arm64 1.9.5-6+b2 [73.2 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 librhash0 arm64 1.4.3-3+b1 [127 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.48.0-4 [142 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.29.3-1 [2167 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.29.3-1+b2 [9058 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 65 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.15.3 [901 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.1.0-1 [361 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libgfortran-13-dev arm64 13.2.0-25 [401 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-25 [8827 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 gfortran-13 arm64 13.2.0-25 [12.8 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7 [1288 B] Get: 77 http://deb.debian.org/debian unstable/main arm64 gfortran arm64 4:13.2.0-7 [1428 B] Get: 78 http://deb.debian.org/debian unstable/main arm64 libnl-3-200 arm64 3.7.0-0.3 [56.5 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libnl-route-3-200 arm64 3.7.0-0.3 [165 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libibverbs1 arm64 50.0-2+b1 [58.2 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 ibverbs-providers arm64 50.0-2+b1 [315 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 icu-devtools arm64 72.1-4+b1 [194 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libadios2-common-c++11-dev all 2.9.2+dfsg1-13 [23.0 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libadios2-common-core-dev arm64 2.9.2+dfsg1-13+b1 [114 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 librdmacm1t64 arm64 50.0-2+b1 [66.6 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libfabric1 arm64 1.17.0-3+b1 [479 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libadios2-mpi-auxiliary-2 arm64 2.9.2+dfsg1-13+b1 [375 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libadios2-mpi-auxiliary-dev arm64 2.9.2+dfsg1-13+b1 [21.1 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libevent-core-2.1-7t64 arm64 2.1.12-stable-10 [125 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10 [54.1 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libhwloc15 arm64 2.10.0-1+b1 [140 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libmunge2 arm64 0.5.15-4 [19.2 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libpciaccess0 arm64 0.17-3+b1 [51.1 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.9-1+b1 [18.1 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.2-3+b1 [24.3 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2 [143 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.7-1 [328 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.7-1+b1 [775 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b1 [51.7 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libxnvctrl0 arm64 535.171.04-1 [13.8 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 ocl-icd-libopencl1 arm64 2.3.2-1+b1 [39.3 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libhwloc-plugins arm64 2.10.0-1+b1 [18.0 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libpmix2t64 arm64 5.0.2-3 [580 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libz3-4 arm64 4.8.12-3.1+b2 [6508 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libllvm17t64 arm64 1:17.0.6-12 [21.3 MB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3+b1 [12.1 MB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libdrm-common all 2.4.120-2 [7688 B] Get: 108 http://deb.debian.org/debian unstable/main arm64 libdrm2 arm64 2.4.120-2 [37.5 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [21.0 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libnuma1 arm64 2.0.18-1 [21.4 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libhsakmt1 arm64 5.7.0-1 [57.6 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libhsa-runtime64-1 arm64 5.7.1-2 [276 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libamdhip64-5 arm64 5.7.1-3 [8698 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 libucx0 arm64 1.16.0+ds-5 [938 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 libopenmpi3t64 arm64 4.1.6-13.3 [2170 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 libaec0 arm64 1.1.3-1 [22.1 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 libsz2 arm64 1.1.3-1 [7664 B] Get: 118 http://deb.debian.org/debian unstable/main arm64 libhdf5-openmpi-103-1t64 arm64 1.10.10+repack-3.3 [1081 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.43-5 [272 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 libpugixml1v5 arm64 1.14-0.1+b1 [78.6 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 libsodium23 arm64 1.0.18-1+b1 [118 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 libyaml-cpp0.8 arm64 0.8.0+dfsg-6+b1 [119 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 libnorm1t64 arm64 1.5.9+dfsg-3.1 [204 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 libpgm-5.3-0t64 arm64 5.3.128~dfsg-2.1 [151 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 libzmq5 arm64 4.3.5-1+b2 [251 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 libadios2-mpi-core-2 arm64 2.9.2+dfsg1-13+b1 [1447 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 libadios2-mpi-c++11-2 arm64 2.9.2+dfsg1-13+b1 [178 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 libadios2-mpi-core-dev arm64 2.9.2+dfsg1-13+b1 [78.2 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 libadios2-mpi-c++11-dev arm64 2.9.2+dfsg1-13+b1 [9212 B] Get: 130 http://deb.debian.org/debian unstable/main arm64 libaec-dev arm64 1.1.3-1 [19.7 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 libsuitesparseconfig7 arm64 1:7.7.0+dfsg-2 [22.3 kB] Get: 132 http://deb.debian.org/debian unstable/main arm64 libamd3 arm64 1:7.7.0+dfsg-2 [36.5 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB] Get: 135 http://deb.debian.org/debian unstable/main arm64 libarpack2t64 arm64 3.9.1-1.1+b1 [81.4 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 libblas-dev arm64 3.12.0-3 [98.2 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 liblapack-dev arm64 3.12.0-3 [3584 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 libarpack2-dev arm64 3.9.1-1.1+b1 [98.2 kB] Get: 139 http://deb.debian.org/debian unstable/main arm64 libbasix0.8 arm64 0.8.0-1 [332 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-1+b2 [35.3 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-1+b2 [29.3 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-1+b2 [26.2 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 pkg-config arm64 1.8.1-1+b2 [14.0 kB] Get: 144 http://deb.debian.org/debian unstable/main arm64 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 libbasix-dev arm64 0.8.0-1 [61.9 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 libboost1.83-dev arm64 1.83.0-2.1+b1 [10.6 MB] Get: 147 http://deb.debian.org/debian unstable/main arm64 libboost-atomic1.83.0 arm64 1.83.0-2.1+b1 [233 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 libboost-atomic1.83-dev arm64 1.83.0-2.1+b1 [234 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 libboost-chrono1.83.0t64 arm64 1.83.0-2.1+b1 [239 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 libboost-chrono1.83-dev arm64 1.83.0-2.1+b1 [244 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 libboost-chrono-dev arm64 1.83.0.2+b2 [4212 B] Get: 152 http://deb.debian.org/debian unstable/main arm64 libboost-date-time1.83.0 arm64 1.83.0-2.1+b1 [230 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 libboost-serialization1.83.0 arm64 1.83.0-2.1+b1 [324 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 libboost-serialization1.83-dev arm64 1.83.0-2.1+b1 [372 kB] Get: 155 http://deb.debian.org/debian unstable/main arm64 libboost-date-time1.83-dev arm64 1.83.0-2.1+b1 [239 kB] Get: 156 http://deb.debian.org/debian unstable/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 157 http://deb.debian.org/debian unstable/main arm64 libboost-filesystem1.83.0 arm64 1.83.0-2.1+b1 [273 kB] Get: 158 http://deb.debian.org/debian unstable/main arm64 libboost-system1.83.0 arm64 1.83.0-2.1+b1 [230 kB] Get: 159 http://deb.debian.org/debian unstable/main arm64 libboost-system1.83-dev arm64 1.83.0-2.1+b1 [231 kB] Get: 160 http://deb.debian.org/debian unstable/main arm64 libboost-filesystem1.83-dev arm64 1.83.0-2.1+b1 [291 kB] Get: 161 http://deb.debian.org/debian unstable/main arm64 libboost-filesystem-dev arm64 1.83.0.2+b2 [3616 B] Get: 162 http://deb.debian.org/debian unstable/main arm64 libboost-regex1.83.0 arm64 1.83.0-2.1+b1 [311 kB] Get: 163 http://deb.debian.org/debian unstable/main arm64 libicu-dev arm64 72.1-4+b1 [10.2 MB] Get: 164 http://deb.debian.org/debian unstable/main arm64 libboost-regex1.83-dev arm64 1.83.0-2.1+b1 [334 kB] Get: 165 http://deb.debian.org/debian unstable/main arm64 libboost-iostreams1.83-dev arm64 1.83.0-2.1+b1 [261 kB] Get: 166 http://deb.debian.org/debian unstable/main arm64 libboost-iostreams-dev arm64 1.83.0.2+b2 [3568 B] Get: 167 http://deb.debian.org/debian unstable/main arm64 libboost-math1.83.0 arm64 1.83.0-2.1+b1 [463 kB] Get: 168 http://deb.debian.org/debian unstable/main arm64 libboost-math1.83-dev arm64 1.83.0-2.1+b1 [518 kB] Get: 169 http://deb.debian.org/debian unstable/main arm64 libboost-math-dev arm64 1.83.0.2+b2 [3784 B] Get: 170 http://deb.debian.org/debian unstable/main arm64 libboost-mpi1.83.0 arm64 1.83.0-2.1+b1 [268 kB] Get: 171 http://deb.debian.org/debian unstable/main arm64 openmpi-common all 4.1.6-13.3 [169 kB] Get: 172 http://deb.debian.org/debian unstable/main arm64 libnl-3-dev arm64 3.7.0-0.3 [101 kB] Get: 173 http://deb.debian.org/debian unstable/main arm64 libnl-route-3-dev arm64 3.7.0-0.3 [197 kB] Get: 174 http://deb.debian.org/debian unstable/main arm64 libibverbs-dev arm64 50.0-2+b1 [626 kB] Get: 175 http://deb.debian.org/debian unstable/main arm64 libnuma-dev arm64 2.0.18-1 [37.4 kB] Get: 176 http://deb.debian.org/debian unstable/main arm64 libltdl7 arm64 2.4.7-7+b1 [393 kB] Get: 177 http://deb.debian.org/debian unstable/main arm64 libltdl-dev arm64 2.4.7-7+b1 [165 kB] Get: 178 http://deb.debian.org/debian unstable/main arm64 libhwloc-dev arm64 2.10.0-1+b1 [234 kB] Get: 179 http://deb.debian.org/debian unstable/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10 [169 kB] Get: 180 http://deb.debian.org/debian unstable/main arm64 libevent-extra-2.1-7t64 arm64 2.1.12-stable-10 [102 kB] Get: 181 http://deb.debian.org/debian unstable/main arm64 libevent-openssl-2.1-7t64 arm64 2.1.12-stable-10 [60.0 kB] Get: 182 http://deb.debian.org/debian unstable/main arm64 libevent-dev arm64 2.1.12-stable-10 [303 kB] Get: 183 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Get: 184 http://deb.debian.org/debian unstable/main arm64 libpmix-dev arm64 5.0.2-3 [3921 kB] Get: 185 http://deb.debian.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 186 http://deb.debian.org/debian unstable/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 187 http://deb.debian.org/debian unstable/main arm64 openmpi-bin arm64 4.1.6-13.3 [225 kB] Get: 188 http://deb.debian.org/debian unstable/main arm64 libopenmpi-dev arm64 4.1.6-13.3 [972 kB] Get: 189 http://deb.debian.org/debian unstable/main arm64 mpi-default-dev arm64 1.15 [3152 B] Get: 190 http://deb.debian.org/debian unstable/main arm64 libboost-mpi1.83-dev arm64 1.83.0-2.1+b1 [290 kB] Get: 191 http://deb.debian.org/debian unstable/main arm64 libboost-mpi-dev arm64 1.83.0.2+b2 [3668 B] Get: 192 http://deb.debian.org/debian unstable/main arm64 libboost-program-options1.83.0 arm64 1.83.0-2.1+b1 [331 kB] Get: 193 http://deb.debian.org/debian unstable/main arm64 libboost-program-options1.83-dev arm64 1.83.0-2.1+b1 [369 kB] Get: 194 http://deb.debian.org/debian unstable/main arm64 libboost-program-options-dev arm64 1.83.0.2+b2 [3600 B] Get: 195 http://deb.debian.org/debian unstable/main arm64 libboost-serialization-dev arm64 1.83.0.2+b2 [3816 B] Get: 196 http://deb.debian.org/debian unstable/main arm64 libboost-thread1.83.0 arm64 1.83.0-2.1+b1 [265 kB] Get: 197 http://deb.debian.org/debian unstable/main arm64 libboost-thread1.83-dev arm64 1.83.0-2.1+b1 [277 kB] Get: 198 http://deb.debian.org/debian unstable/main arm64 libboost-thread-dev arm64 1.83.0.2+b2 [3616 B] Get: 199 http://deb.debian.org/debian unstable/main arm64 libboost-timer1.83.0 arm64 1.83.0-2.1+b1 [234 kB] Get: 200 http://deb.debian.org/debian unstable/main arm64 libboost-timer1.83-dev arm64 1.83.0-2.1+b1 [236 kB] Get: 201 http://deb.debian.org/debian unstable/main arm64 libboost-timer-dev arm64 1.83.0.2+b2 [3712 B] Get: 202 http://deb.debian.org/debian unstable/main arm64 libbtf2 arm64 1:7.7.0+dfsg-2 [23.0 kB] Get: 203 http://deb.debian.org/debian unstable/main arm64 libc6-dbg arm64 2.38-11 [6174 kB] Get: 204 http://deb.debian.org/debian unstable/main arm64 libcamd3 arm64 1:7.7.0+dfsg-2 [33.3 kB] Get: 205 http://deb.debian.org/debian unstable/main arm64 libccolamd3 arm64 1:7.7.0+dfsg-2 [36.1 kB] Get: 206 http://deb.debian.org/debian unstable/main arm64 libcolamd3 arm64 1:7.7.0+dfsg-2 [29.9 kB] Get: 207 http://deb.debian.org/debian unstable/main arm64 libcholmod5 arm64 1:7.7.0+dfsg-2 [507 kB] Get: 208 http://deb.debian.org/debian unstable/main arm64 libcombblas2.0.0t64 arm64 2.0.0-3.1+b1 [277 kB] Get: 209 http://deb.debian.org/debian unstable/main arm64 libcurl4-openssl-dev arm64 8.8.0-1 [532 kB] Get: 210 http://deb.debian.org/debian unstable/main arm64 libcxsparse4 arm64 1:7.7.0+dfsg-2 [73.7 kB] Get: 211 http://deb.debian.org/debian unstable/main arm64 libfftw3-double3 arm64 3.3.10-1+b2 [329 kB] Get: 212 http://deb.debian.org/debian unstable/main arm64 libfftw3-long3 arm64 3.3.10-1+b2 [532 kB] Get: 213 http://deb.debian.org/debian unstable/main arm64 libfftw3-single3 arm64 3.3.10-1+b2 [497 kB] Get: 214 http://deb.debian.org/debian unstable/main arm64 libfftw3-mpi3 arm64 3.3.10-1+b2 [55.0 kB] Get: 215 http://deb.debian.org/debian unstable/main arm64 libmetis5 arm64 5.1.0.dfsg-7+b1 [158 kB] Get: 216 http://deb.debian.org/debian unstable/main arm64 libptscotch-7.0 arm64 7.0.4-2 [605 kB] Get: 217 http://deb.debian.org/debian unstable/main arm64 libsuperlu-dist8 arm64 8.2.1+dfsg1-1+b2 [511 kB] Get: 218 http://deb.debian.org/debian unstable/main arm64 libhypre-2.29.0 arm64 2.29.0-2 [1422 kB] Get: 219 http://deb.debian.org/debian unstable/main arm64 libklu2 arm64 1:7.7.0+dfsg-2 [76.3 kB] Get: 220 http://deb.debian.org/debian unstable/main arm64 mpi-default-bin arm64 1.15 [2408 B] Get: 221 http://deb.debian.org/debian unstable/main arm64 libscalapack-openmpi2.2 arm64 2.2.1-3.1 [1186 kB] Get: 222 http://deb.debian.org/debian unstable/main arm64 libmumps-5.6t64 arm64 5.6.2-2.1+b1 [1610 kB] Get: 223 http://deb.debian.org/debian unstable/main arm64 libspqr4 arm64 1:7.7.0+dfsg-2 [122 kB] Get: 224 http://deb.debian.org/debian unstable/main arm64 libsuperlu6 arm64 6.0.1+dfsg1-1+b1 [141 kB] Get: 225 http://deb.debian.org/debian unstable/main arm64 libscotch-7.0 arm64 7.0.4-2 [362 kB] Get: 226 http://deb.debian.org/debian unstable/main arm64 libtrilinos-kokkos-13.2 arm64 13.2.0-5+b3 [98.5 kB] Get: 227 http://deb.debian.org/debian unstable/main arm64 libtrilinos-teuchos-13.2 arm64 13.2.0-5+b3 [1134 kB] Get: 228 http://deb.debian.org/debian unstable/main arm64 libtrilinos-epetra-13.2 arm64 13.2.0-5+b3 [375 kB] Get: 229 http://deb.debian.org/debian unstable/main arm64 libtrilinos-triutils-13.2 arm64 13.2.0-5+b3 [111 kB] Get: 230 http://deb.debian.org/debian unstable/main arm64 libtrilinos-epetraext-13.2 arm64 13.2.0-5+b3 [388 kB] Get: 231 http://deb.debian.org/debian unstable/main arm64 libtrilinos-trilinosss-13.2 arm64 13.2.0-5+b3 [76.9 kB] Get: 232 http://deb.debian.org/debian unstable/main arm64 libtrilinos-amesos-13.2 arm64 13.2.0-5+b3 [107 kB] Get: 233 http://deb.debian.org/debian unstable/main arm64 libtrilinos-aztecoo-13.2 arm64 13.2.0-5+b3 [187 kB] Get: 234 http://deb.debian.org/debian unstable/main arm64 libtrilinos-galeri-13.2 arm64 13.2.0-5+b3 [84.9 kB] Get: 235 http://deb.debian.org/debian unstable/main arm64 libtrilinos-ifpack-13.2 arm64 13.2.0-5+b3 [431 kB] Get: 236 http://deb.debian.org/debian unstable/main arm64 libtrilinos-zoltan-13.2 arm64 13.2.0-5+b3 [327 kB] Get: 237 http://deb.debian.org/debian unstable/main arm64 libtrilinos-ml-13.2 arm64 13.2.0-5+b3 [859 kB] Get: 238 http://deb.debian.org/debian unstable/main arm64 libumfpack6 arm64 1:7.7.0+dfsg-2 [214 kB] Get: 239 http://deb.debian.org/debian unstable/main arm64 libyaml-0-2 arm64 0.2.5-1+b1 [49.0 kB] Get: 240 http://deb.debian.org/debian unstable/main arm64 libpetsc-real3.20 arm64 3.20.6+dfsg1-1 [4999 kB] Get: 241 http://deb.debian.org/debian unstable/main arm64 libparpack2t64 arm64 3.9.1-1.1+b1 [75.9 kB] Get: 242 http://deb.debian.org/debian unstable/main arm64 libslepc-real3.20 arm64 3.20.2+dfsg1-2 [869 kB] Get: 243 http://deb.debian.org/debian unstable/main arm64 libdolfinx-real0.8 arm64 1:0.8.0-6+b1 [508 kB] Get: 244 http://deb.debian.org/debian unstable/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 245 http://deb.debian.org/debian unstable/main arm64 libldl3 arm64 1:7.7.0+dfsg-2 [22.7 kB] Get: 246 http://deb.debian.org/debian unstable/main arm64 libsuitesparse-mongoose3 arm64 1:7.7.0+dfsg-2 [42.1 kB] Get: 247 http://deb.debian.org/debian unstable/main arm64 librbio4 arm64 1:7.7.0+dfsg-2 [36.5 kB] Get: 248 http://deb.debian.org/debian unstable/main arm64 libspex3 arm64 1:7.7.0+dfsg-2 [51.7 kB] Get: 249 http://deb.debian.org/debian unstable/main arm64 libparu0 arm64 1:7.7.0+dfsg-2 [56.5 kB] Get: 250 http://deb.debian.org/debian unstable/main arm64 libsuitesparse-dev arm64 1:7.7.0+dfsg-2 [1253 kB] Get: 251 http://deb.debian.org/debian unstable/main arm64 libscotch-dev arm64 7.0.4-2 [1519 kB] Get: 252 http://deb.debian.org/debian unstable/main arm64 libptscotch-dev arm64 7.0.4-2 [1272 kB] Get: 253 http://deb.debian.org/debian unstable/main arm64 libscalapack-openmpi-dev arm64 2.2.1-3.1 [9772 B] Get: 254 http://deb.debian.org/debian unstable/main arm64 libscalapack-mpi-dev arm64 2.2.1-3.1 [4916 B] Get: 255 http://deb.debian.org/debian unstable/main arm64 libfftw3-bin arm64 3.3.10-1+b2 [43.2 kB] Get: 256 http://deb.debian.org/debian unstable/main arm64 libfftw3-dev arm64 3.3.10-1+b2 [1213 kB] Get: 257 http://deb.debian.org/debian unstable/main arm64 libfftw3-mpi-dev arm64 3.3.10-1+b2 [59.7 kB] Get: 258 http://deb.debian.org/debian unstable/main arm64 libssl-dev arm64 3.2.1-3 [3089 kB] Get: 259 http://deb.debian.org/debian unstable/main arm64 opencl-c-headers all 3.0~2023.12.14-1 [45.0 kB] Get: 260 http://deb.debian.org/debian unstable/main arm64 opencl-clhpp-headers all 3.0~2023.12.14-1 [49.5 kB] Get: 261 http://deb.debian.org/debian unstable/main arm64 ocl-icd-opencl-dev arm64 2.3.2-1+b1 [8656 B] Get: 262 http://deb.debian.org/debian unstable/main arm64 libhdf5-openmpi-fortran-102t64 arm64 1.10.10+repack-3.3 [88.1 kB] Get: 263 http://deb.debian.org/debian unstable/main arm64 libhdf5-openmpi-hl-100t64 arm64 1.10.10+repack-3.3 [60.0 kB] Get: 264 http://deb.debian.org/debian unstable/main arm64 libhdf5-openmpi-hl-fortran-100t64 arm64 1.10.10+repack-3.3 [38.4 kB] Get: 265 http://deb.debian.org/debian unstable/main arm64 libhdf5-openmpi-cpp-103-1t64 arm64 1.10.10+repack-3.3 [118 kB] Get: 266 http://deb.debian.org/debian unstable/main arm64 libhdf5-openmpi-hl-cpp-100t64 arm64 1.10.10+repack-3.3 [21.3 kB] Get: 267 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3 [172 kB] Get: 268 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3 [292 kB] Get: 269 http://deb.debian.org/debian unstable/main arm64 libjpeg-dev arm64 1:2.1.5-3 [71.9 kB] Get: 270 http://deb.debian.org/debian unstable/main arm64 libhdf5-openmpi-dev arm64 1.10.10+repack-3.3 [2766 kB] Get: 271 http://deb.debian.org/debian unstable/main arm64 libhdf5-mpi-dev arm64 1.10.10+repack-3.3 [15.5 kB] Get: 272 http://deb.debian.org/debian unstable/main arm64 libsuperlu-dev arm64 6.0.1+dfsg1-1+b1 [21.8 kB] Get: 273 http://deb.debian.org/debian unstable/main arm64 libsuperlu-dist-dev arm64 8.2.1+dfsg1-1+b2 [844 kB] Get: 274 http://deb.debian.org/debian unstable/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 275 http://deb.debian.org/debian unstable/main arm64 x11proto-dev all 2024.1-1 [603 kB] Get: 276 http://deb.debian.org/debian unstable/main arm64 libxau-dev arm64 1:1.0.9-1+b1 [21.5 kB] Get: 277 http://deb.debian.org/debian unstable/main arm64 libxdmcp-dev arm64 1:1.1.2-3+b1 [40.6 kB] Get: 278 http://deb.debian.org/debian unstable/main arm64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 279 http://deb.debian.org/debian unstable/main arm64 libxcb1-dev arm64 1.17.0-2 [183 kB] Get: 280 http://deb.debian.org/debian unstable/main arm64 libx11-dev arm64 2:1.8.7-1+b1 [861 kB] Get: 281 http://deb.debian.org/debian unstable/main arm64 libyaml-dev arm64 0.2.5-1+b1 [61.1 kB] Get: 282 http://deb.debian.org/debian unstable/main arm64 libpetsc3.20-dev-common all 3.20.6+dfsg1-1 [297 kB] Get: 283 http://deb.debian.org/debian unstable/main arm64 libhypre-dev arm64 2.29.0-2 [1741 kB] Get: 284 http://deb.debian.org/debian unstable/main arm64 libmumps-headers-dev all 5.6.2-2.1 [34.7 kB] Get: 285 http://deb.debian.org/debian unstable/main arm64 libmumps-dev arm64 5.6.2-2.1+b1 [1615 kB] Get: 286 http://deb.debian.org/debian unstable/main arm64 trilinos-dev arm64 13.2.0-5+b3 [12.7 kB] Get: 287 http://deb.debian.org/debian unstable/main arm64 libtrilinos-aztecoo-dev arm64 13.2.0-5+b3 [51.0 kB] Get: 288 http://deb.debian.org/debian unstable/main arm64 libtrilinos-trilinosss-dev arm64 13.2.0-5+b3 [33.6 kB] Get: 289 http://deb.debian.org/debian unstable/main arm64 libtrilinos-ml-dev arm64 13.2.0-5+b3 [117 kB] Get: 290 http://deb.debian.org/debian unstable/main arm64 libtrilinos-zoltan-dev arm64 13.2.0-5+b3 [34.1 kB] Get: 291 http://deb.debian.org/debian unstable/main arm64 valgrind arm64 1:3.20.0-2.1 [7947 kB] Get: 292 http://deb.debian.org/debian unstable/main arm64 valgrind-mpi arm64 1:3.20.0-2.1 [121 kB] Get: 293 http://deb.debian.org/debian unstable/main arm64 libpetsc-real3.20-dev arm64 3.20.6+dfsg1-1 [6651 kB] Get: 294 http://deb.debian.org/debian unstable/main arm64 libparpack2-dev arm64 3.9.1-1.1+b1 [90.2 kB] Get: 295 http://deb.debian.org/debian unstable/main arm64 libslepc-real3.20-dev arm64 3.20.2+dfsg1-2 [5674 kB] Get: 296 http://deb.debian.org/debian unstable/main arm64 libdolfinx-real-dev arm64 1:0.8.0-6+b1 [46.3 kB] Get: 297 http://deb.debian.org/debian unstable/main arm64 libpugixml-dev arm64 1.14-0.1+b1 [101 kB] Get: 298 http://deb.debian.org/debian unstable/main arm64 libxml2-dev arm64 2.12.7+dfsg-1 [145 kB] Get: 299 http://deb.debian.org/debian unstable/main arm64 python3-cffi-backend arm64 1.16.0-2+b2 [109 kB] Get: 300 http://deb.debian.org/debian unstable/main arm64 python3-ply all 3.11-6 [63.7 kB] Get: 301 http://deb.debian.org/debian unstable/main arm64 python3-pycparser all 2.22-1 [78.0 kB] Get: 302 http://deb.debian.org/debian unstable/main arm64 python3-cffi all 1.16.0-2 [88.5 kB] Get: 303 http://deb.debian.org/debian unstable/main arm64 libpython3.11t64 arm64 3.11.9-1 [1814 kB] Get: 304 http://deb.debian.org/debian unstable/main arm64 libexpat1-dev arm64 2.6.2-1 [278 kB] Get: 305 http://deb.debian.org/debian unstable/main arm64 libpython3.11-dev arm64 3.11.9-1 [4358 kB] Get: 306 http://deb.debian.org/debian unstable/main arm64 libpython3-dev arm64 3.11.8-1 [9564 B] Get: 307 http://deb.debian.org/debian unstable/main arm64 python3.11-dev arm64 3.11.9-1 [501 kB] Get: 308 http://deb.debian.org/debian unstable/main arm64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 309 http://deb.debian.org/debian unstable/main arm64 python3-distutils all 3.12.3-1 [131 kB] Get: 310 http://deb.debian.org/debian unstable/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 311 http://deb.debian.org/debian unstable/main arm64 libjs-sphinxdoc all 7.2.6-8 [150 kB] Get: 312 http://deb.debian.org/debian unstable/main arm64 python3-dev arm64 3.11.8-1 [26.1 kB] Get: 313 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 314 http://deb.debian.org/debian unstable/main arm64 python3-numpy arm64 1:1.26.4+ds-10 [4221 kB] Get: 315 http://deb.debian.org/debian unstable/main arm64 python3-ufl all 2024.1.0-1 [149 kB] Get: 316 http://deb.debian.org/debian unstable/main arm64 python3-basix arm64 0.8.0-1 [127 kB] Get: 317 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 68.1.2-2 [468 kB] Get: 318 http://deb.debian.org/debian unstable/main arm64 python3-ffcx all 1:0.8.0-1 [100 kB] Get: 319 http://deb.debian.org/debian unstable/main arm64 libdolfinx-dev arm64 1:0.8.0-6+b1 [208 kB] Fetched 242 MB in 3s (85.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19763 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.9-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.2-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_arm64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:arm64 (3.11.9-1) ... Setting up libexpat1:arm64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20079 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_arm64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../5-libreadline8t64_8.2-4_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:arm64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_arm64.deb ... Unpacking libpython3.11-stdlib:arm64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_arm64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21071 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.8-1_arm64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../001-libproc2-0_2%3a4.0.4-4_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.4-4_arm64.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-14+b1_arm64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../008-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-4_arm64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.1-1_arm64.deb ... Unpacking bsdextrautils (2.40.1-1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../011-libpipeline1_1.5.7-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.12.1-1_arm64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package libbsd0:arm64. 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Setting up media-types (10.1.0) ... Setting up libpipeline1:arm64 (1.5.7-2) ... Setting up libboost-program-options1.83.0:arm64 (1.83.0-2.1+b1) ... Setting up libnorm1t64:arm64 (1.5.9+dfsg-3.1) ... Setting up libpciaccess0:arm64 (0.17-3+b1) ... Setting up libxau6:arm64 (1:1.0.9-1+b1) ... Setting up libkeyutils1:arm64 (1.6.3-3) ... Setting up libadios2-common-c++11-dev (2.9.2+dfsg1-13) ... Setting up libboost1.83-dev:arm64 (1.83.0-2.1+b1) ... Setting up fonts-mathjax (2.7.9+dfsg-1) ... Setting up libfftw3-single3:arm64 (3.3.10-1+b2) ... Setting up libsodium23:arm64 (1.0.18-1+b1) ... Setting up libicu72:arm64 (72.1-4+b1) ... Setting up bsdextrautils (2.40.1-1) ... Setting up libjs-mathjax (2.7.9+dfsg-1) ... Setting up libboost-date-time1.83.0:arm64 (1.83.0-2.1+b1) ... Setting up trilinos-dev:arm64 (13.2.0-5+b3) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libboost-timer1.83.0:arm64 (1.83.0-2.1+b1) ... Setting up libcbor0.10:arm64 (0.10.2-1.2) ... 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Setting up libtrilinos-kokkos-13.2:arm64 (13.2.0-5+b3) ... Setting up libmetis5:arm64 (5.1.0.dfsg-7+b1) ... Setting up libcom-err2:arm64 (1.47.1-1) ... Setting up libldl3:arm64 (1:7.7.0+dfsg-2) ... Setting up file (1:5.45-3) ... Setting up libboost-filesystem1.83.0:arm64 (1.83.0-2.1+b1) ... Setting up libaec0:arm64 (1.1.3-1) ... Setting up libpugixml1v5:arm64 (1.14-0.1+b1) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up libc6-dbg:arm64 (2.38-11) ... Setting up libkrb5support0:arm64 (1.20.1-6+b1) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-6) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Sat May 25 10:12:13 UTC 2024. Universal Time is now: Sat May 25 10:12:13 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libboost-atomic1.83.0:arm64 (1.83.0-2.1+b1) ... Setting up libtrilinos-trilinosss-13.2:arm64 (13.2.0-5+b3) ... Setting up libboost-serialization1.83.0:arm64 (1.83.0-2.1+b1) ... 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Setting up libhdf5-openmpi-cpp-103-1t64:arm64 (1.10.10+repack-3.3) ... Setting up libtrilinos-aztecoo-dev:arm64 (13.2.0-5+b3) ... Setting up libopenmpi-dev:arm64 (4.1.6-13.3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode Setting up libtrilinos-triutils-13.2:arm64 (13.2.0-5+b3) ... Setting up libscalapack-openmpi2.2:arm64 (2.2.1-3.1) ... Setting up libadios2-mpi-core-2:arm64 (2.9.2+dfsg1-13+b1) ... Setting up libsuperlu-dist8:arm64 (8.2.1+dfsg1-1+b2) ... Setting up libfftw3-mpi-dev:arm64 (3.3.10-1+b2) ... Setting up libadios2-mpi-core-dev:arm64 (2.9.2+dfsg1-13+b1) ... Setting up libhdf5-openmpi-hl-100t64:arm64 (1.10.10+repack-3.3) ... Setting up libsuperlu-dist-dev:arm64 (8.2.1+dfsg1-1+b2) ... Setting up libhdf5-openmpi-hl-fortran-100t64:arm64 (1.10.10+repack-3.3) ... Setting up libadios2-mpi-c++11-2:arm64 (2.9.2+dfsg1-13+b1) ... Setting up libmumps-5.6t64:arm64 (5.6.2-2.1+b1) ... Setting up libtrilinos-epetraext-13.2:arm64 (13.2.0-5+b3) ... Setting up libscalapack-openmpi-dev:arm64 (2.2.1-3.1) ... Setting up libtrilinos-galeri-13.2:arm64 (13.2.0-5+b3) ... Setting up mpi-default-dev (1.15) ... Setting up libhdf5-openmpi-hl-cpp-100t64:arm64 (1.10.10+repack-3.3) ... Setting up libtrilinos-amesos-13.2:arm64 (13.2.0-5+b3) ... Setting up libscalapack-mpi-dev:arm64 (2.2.1-3.1) ... Setting up libhdf5-openmpi-dev (1.10.10+repack-3.3) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-mpi.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libhypre-2.29.0:arm64 (2.29.0-2) ... Setting up libmumps-dev:arm64 (5.6.2-2.1+b1) ... Setting up libscotch-dev (7.0.4-2) ... Setting up libadios2-mpi-c++11-dev:arm64 (2.9.2+dfsg1-13+b1) ... Setting up libparpack2-dev:arm64 (3.9.1-1.1+b1) ... Setting up libhypre-dev:arm64 (2.29.0-2) ... Setting up libptscotch-dev (7.0.4-2) ... Setting up libboost-mpi1.83-dev (1.83.0-2.1+b1) ... Setting up libboost-mpi-dev (1.83.0.2+b2) ... Setting up libtrilinos-ifpack-13.2:arm64 (13.2.0-5+b3) ... Setting up libhdf5-mpi-dev (1.10.10+repack-3.3) ... Setting up libtrilinos-ml-13.2:arm64 (13.2.0-5+b3) ... Setting up libpetsc3.20-dev-common (3.20.6+dfsg1-1) ... Setting up libtrilinos-ml-dev:arm64 (13.2.0-5+b3) ... Setting up libpetsc-real3.20:arm64 (3.20.6+dfsg1-1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/libpetsc_real.so.3.20.6 to provide /usr/lib/aarch64-linux-gnu/libpetsc.so.3.20 (libpetsc.so.3.20) in auto mode Setting up libslepc-real3.20 (3.20.2+dfsg1-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/libslepc_real.so.3.20.2 to provide /usr/lib/aarch64-linux-gnu/libslepc.so.3.20 (libslepc.so.3.20) in auto mode Setting up libdolfinx-real0.8:arm64 (1:0.8.0-6+b1) ... Setting up libpetsc-real3.20-dev:arm64 (3.20.6+dfsg1-1) ... update-alternatives: error: no alternatives for petsc update-alternatives: using /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/libpetsc_real.so.3.20.6 to provide /usr/lib/aarch64-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real to provide /usr/lib/petscdir/3.20 (petsc3.20) in auto mode Setting up libslepc-real3.20-dev (3.20.2+dfsg1-2) ... update-alternatives: error: no alternatives for slepc update-alternatives: using /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real to provide /usr/lib/slepc (slepc) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/libslepc_real.so.3.20.2 to provide /usr/lib/aarch64-linux-gnu/libslepc_real.so (libslepc_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real to provide /usr/lib/slepcdir/3.20 (slepc3.20) in auto mode Setting up libdolfinx-real-dev:arm64 (1:0.8.0-6+b1) ... Setting up libdolfinx-dev:arm64 (1:0.8.0-6+b1) ... Processing triggers for libc-bin (2.38-11) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/fenicsx-performance-tests-0.8.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fenicsx-performance-tests_0.8.0-1_source.changes dpkg-buildpackage: info: source package fenicsx-performance-tests dpkg-buildpackage: info: source version 0.8.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Francesco Ballarin dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=cmake --sourcedirectory=src dh_auto_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_clean -O--buildsystem=cmake -O--sourcedirectory=src debian/rules binary dh binary --buildsystem=cmake --sourcedirectory=src dh_update_autotools_config -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf -O--buildsystem=cmake -O--sourcedirectory=src debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0' dh_auto_configure -- -D CMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -D CMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF ../src -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.83.0 at /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer;filesystem -- Found boost_headers 1.83.0 at /usr/lib/aarch64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/aarch64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Found boost_filesystem 1.83.0 at /usr/lib/aarch64-linux-gnu/cmake/boost_filesystem-1.83.0 -- [x] libboost_filesystem.so.1.83.0 -- [ ] libboost_filesystem.a -- Adding boost_filesystem dependencies: atomic;headers -- Found boost_atomic 1.83.0 at /usr/lib/aarch64-linux-gnu/cmake/boost_atomic-1.83.0 -- [x] libboost_atomic.so.1.83.0 -- [ ] libboost_atomic.a -- Adding boost_atomic dependencies: headers -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70") found components: timer filesystem -- Found Python3: /usr/bin/python3 (found version "3.11.9") found components: Interpreter -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/aarch64-linux-gnu/libcrypto.so;/usr/lib/aarch64-linux-gnu/libcurl.so;/usr/lib/aarch64-linux-gnu/libsz.so;/usr/lib/aarch64-linux-gnu/libz.so;/usr/lib/aarch64-linux-gnu/libdl.a;/usr/lib/aarch64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/aarch64-linux-gnu/libcrypto.so;/usr/lib/aarch64-linux-gnu/libcurl.so;/usr/lib/aarch64-linux-gnu/libsz.so;/usr/lib/aarch64-linux-gnu/libz.so;/usr/lib/aarch64-linux-gnu/libdl.a;/usr/lib/aarch64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/aarch64-linux-gnu/libcrypto.so;/usr/lib/aarch64-linux-gnu/libcurl.so;/usr/lib/aarch64-linux-gnu/libsz.so;/usr/lib/aarch64-linux-gnu/libz.so;/usr/lib/aarch64-linux-gnu/libdl.a;/usr/lib/aarch64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/aarch64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.9.2", minimum required is "2.8.1") found components: CXX -- Found Boost 1.83.0 at /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: QUIET REQUIRED COMPONENTS program_options -- Found boost_program_options 1.83.0 at /usr/lib/aarch64-linux-gnu/cmake/boost_program_options-1.83.0 -- [x] libboost_program_options.so.1.83.0 -- [ ] libboost_program_options.a -- Adding boost_program_options dependencies: headers -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70") found components: program_options -- -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -- Configuring done (5.5s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0' dh_auto_build -O--buildsystem=cmake -O--sourcedirectory=src cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/fenicsx-performance-tests-0.8.0/src -B/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/depend make[3]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu' [ 9%] Generating Elasticity.c [ 18%] Generating Poisson.c ffcx /build/reproducible-path/fenicsx-performance-tests-0.8.0/src/Elasticity.py ffcx /build/reproducible-path/fenicsx-performance-tests-0.8.0/src/Poisson.py cd /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenicsx-performance-tests-0.8.0/src /build/reproducible-path/fenicsx-performance-tests-0.8.0/src /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu/CMakeFiles/dolfinx-scaling-test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/build make[3]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu' [ 45%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o [ 45%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o [ 45%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o [ 54%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.8.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.8.0/src/main.cpp /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.8.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.8.0/src/mesh.cpp /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.8.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.8.0/src/elasticity_problem.cpp [ 63%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.8.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem 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directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu' [100%] Built target dolfinx-scaling-test make[2]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0' debian/tests/run-dolfinx-scaling-test -p /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu ==== elasticity weak scaling (3 processes with ndofs=10000) ==== 2024-05-24 22:12:58.750 ( 0.068s) [RANK: 0 ] utils.cpp:94 INFO| Compute partition of cells across ranks 2024-05-24 22:12:58.751 ( 0.069s) [RANK: 0 ] graphbuild.cpp:491 INFO| Building mesh dual graph 2024-05-24 22:12:58.751 ( 0.069s) [RANK: 0 ] graphbuild.cpp:356 INFO| Build local part of mesh dual graph 2024-05-24 22:12:58.783 ( 0.101s) [RANK: 0 ] graphbuild.cpp:51 INFO| Build nonlocal part of mesh dual graph 2024-05-24 22:12:58.783 ( 0.101s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:12:58.783 ( 0.101s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:12:58.783 ( 0.101s) [RANK: 0 ] graphbuild.cpp:165 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 2024-05-24 22:12:58.786 ( 0.104s) [RANK: 0 ] graphbuild.cpp:503 INFO| Graph edges (local: 66332, non-local: 962) 2024-05-24 22:12:58.786 ( 0.104s) [RANK: 0 ] partitioners.cpp:315 INFO| Compute graph partition using PT-SCOTCH 2024-05-24 22:13:08.272 ( 9.590s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 3 2024-05-24 22:13:08.274 ( 9.592s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2024-05-24 22:13:08.275 ( 9.593s) [RANK: 0 ] graphbuild.cpp:356 INFO| Build local part of mesh dual graph 2024-05-24 22:13:08.287 ( 9.605s) [RANK: 0 ] ordering.cpp:204 INFO| GPS pseudo-diameter:(122) 1118-16623 2024-05-24 22:13:08.288 ( 9.606s) [RANK: 0 ] Topology.cpp:1330 INFO| Create topology (single cell type) 2024-05-24 22:13:08.288 ( 9.606s) [RANK: 0 ] Topology.cpp:1044 INFO| Create topology (generalised) 2024-05-24 22:13:08.315 ( 9.633s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 3 2024-05-24 22:13:08.315 ( 9.633s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2024-05-24 22:13:08.318 ( 9.636s) [RANK: 0 ] partition.cpp:233 INFO| Compute ghost indices 2024-05-24 22:13:08.318 ( 9.636s) [RANK: 0 ] MPI.cpp:97 INFO| Computing communication graph edges (using PCX algorithm). Number of input edges: 0 2024-05-24 22:13:08.324 ( 9.642s) [RANK: 0 ] MPI.cpp:154 INFO| Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 2024-05-24 22:13:08.325 ( 9.643s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 0 2024-05-24 22:13:08.326 ( 9.644s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2024-05-24 22:13:08.330 ( 9.648s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:08.334 ( 9.652s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:13:08.334 ( 9.652s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:08.334 ( 9.652s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:13:08.335 ( 9.654s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 0 2024-05-24 22:13:08.336 ( 9.654s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2024-05-24 22:13:08.336 ( 9.654s) [RANK: 0 ] MPI.h:377 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 2024-05-24 22:13:08.336 ( 9.654s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:08.336 ( 9.654s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:13:08.336 ( 9.654s) [RANK: 0 ] MPI.h:518 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 2024-05-24 22:13:08.336 ( 9.654s) [RANK: 0 ] dofmapbuilder.cpp:166 INFO| Checking required entities per dimension 2024-05-24 22:13:08.336 ( 9.654s) [RANK: 0 ] dofmapbuilder.cpp:264 INFO| Cell type:0, dofmap:17345x4 2024-05-24 22:13:08.338 ( 9.656s) [RANK: 0 ] dofmapbuilder.cpp:320 INFO| Global index computation 2024-05-24 22:13:08.338 ( 9.656s) [RANK: 0 ] dofmapbuilder.cpp:637 INFO| Got 1 index_maps 2024-05-24 22:13:08.338 ( 9.656s) [RANK: 0 ] dofmapbuilder.cpp:644 INFO| Get global indices 2024-05-24 22:13:08.340 ( 9.658s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:08.340 ( 9.658s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (24x19x19) to be refined 0 times 2024-05-24 22:13:08.341 ( 9.659s) [RANK: 0 ]topologycomputation.cpp:748 INFO| Computing mesh entities of dimension 2 2024-05-24 22:13:08.345 ( 9.663s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:08.348 ( 9.666s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:13:08.374 ( 9.692s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:08.374 ( 9.692s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:13:08.375 ( 9.693s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (3,0) 2024-05-24 22:13:08.375 ( 9.693s) [RANK: 0 ]topologycomputation.cpp:870 INFO| Computing mesh connectivity 2 - 3 from transpose. 2024-05-24 22:13:08.376 ( 9.694s) [RANK: 0 ] dofmapbuilder.cpp:166 INFO| Checking required entities per dimension 2024-05-24 22:13:08.376 ( 9.694s) [RANK: 0 ] dofmapbuilder.cpp:264 INFO| Cell type:0, dofmap:17345x4 2024-05-24 22:13:08.377 ( 9.695s) [RANK: 0 ] dofmapbuilder.cpp:320 INFO| Global index computation 2024-05-24 22:13:08.377 ( 9.695s) [RANK: 0 ] dofmapbuilder.cpp:637 INFO| Got 1 index_maps 2024-05-24 22:13:08.377 ( 9.695s) [RANK: 0 ] dofmapbuilder.cpp:644 INFO| Get global indices 2024-05-24 22:13:08.378 ( 9.696s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:08.378 ( 9.696s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:13:08.378 ( 9.696s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (0,0) 2024-05-24 22:13:08.378 ( 9.696s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (0,0) 2024-05-24 22:13:08.378 ( 9.696s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (0,0) 2024-05-24 22:13:08.389 ( 9.707s) [RANK: 0 ] SparsityPattern.cpp:385 INFO| Column ghost size increased from 221 to 552 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.8.0 dolfinx hash: debian_1:0.8.0-6+b1 ufl hash: ea06373d6123e47e4a3c75d92f167503ae508922 petsc version: Petsc Release Version 3.20.6, Mar 29, 2024 Problem type: elasticity Scaling type: weak Num processes: 3 Num cells: 51984 (52 thousand) Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- 2024-05-24 22:13:08.479 ( 9.797s) [RANK: 0 ] petsc.cpp:700 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = -1. -1. -1. Threshold scaling factor for each level not specified = 1. AGG specific options Number of levels of aggressive coarsening 1 MIS-k aggressive coarsening MIS-2 coarsening on aggressive levels Number smoothing steps 1 Complexity: grid = 1.0696 operator = 1.27724 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 3 MPI processes type: bjacobi number of blocks = 3 Local solver information for first block is in the following KSP and PC objects on rank 0: Use -mg_coarse_ksp_view ::ascii_info_detail to display information for all blocks KSP Object: (mg_coarse_sub_) 1 MPI process type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI process type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.0625 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=204, cols=204, bs=6 package used to perform factorization: petsc total: nonzeros=39168, allocated nonzeros=39168 using I-node routines: found 53 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=204, cols=204, bs=6 total: nonzeros=36864, allocated nonzeros=36864 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 65 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=204, cols=204, bs=6 total: nonzeros=36864, allocated nonzeros=36864 total number of mallocs used during MatSetValues calls=0 using I-node (on process 0) routines: found 65 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind eigenvalue targets used: min 0.287871, max 3.16658 eigenvalues provided (min 1.72859e-06, max 2.87871) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=1884, cols=1884, bs=6 total: nonzeros=310104, allocated nonzeros=310104 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 204 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind eigenvalue targets used: min 0.257981, max 2.83779 eigenvalues provided (min 0.073161, max 2.57981) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3402 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3402 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot ------------------------------------------------------------------------------------------------------- Build BoxMesh (tetrahedra) | 1 9.590000 9.590000 Build dofmap data | 2 0.000000 0.000000 Build sparsity | 1 0.000000 0.000000 Compute connectivity 2-0 | 1 0.010000 0.010000 Compute dof reordering map | 2 0.000000 0.000000 Compute entities of dim = 2 | 1 0.030000 0.030000 Compute graph partition (SCOTCH) | 1 9.490000 9.490000 Compute local part of mesh dual graph | 2 0.020000 0.040000 Compute local-to-local map | 1 0.000000 0.000000 Compute non-local part of mesh dual graph | 1 0.020000 0.020000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 Distribute AdjacencyList nodes to destination ranks | 1 0.020000 0.020000 Distribute row-wise data (scalable) | 1 0.000000 0.000000 GPS: create_level_structure | 2 0.002500 0.010000 Gibbs-Poole-Stockmeyer ordering | 1 0.010000 0.010000 Init MPI | 1 0.060000 0.060000 Init PETSc | 1 0.010000 0.010000 Init dofmap from element dofmap | 2 0.000000 0.000000 Init logging | 1 0.000000 0.000000 PETSc Krylov solver | 1 0.330000 0.330000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 SCOTCH: call SCOTCH_dgraphPart | 1 9.490000 9.490000 SparsityPattern::finalize | 1 0.010000 0.010000 Topology: create | 1 0.040000 0.040000 Topology: determine shared index ownership | 1 0.030000 0.030000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.000000 0.000000 ZZZ Assemble matrix | 1 0.080000 0.080000 ZZZ Assemble vector | 1 0.000000 0.000000 ZZZ Create Mesh | 1 9.590000 9.590000 ZZZ Create RHS function | 1 0.000000 0.000000 ZZZ Create boundary conditions | 1 0.000000 0.000000 ZZZ Create facets and facet->cell connectivity | 1 0.040000 0.040000 ZZZ Create forms | 1 0.000000 0.000000 ZZZ Create near-nullspace | 1 0.010000 0.010000 ZZZ FunctionSpace | 1 0.000000 0.000000 ZZZ Solve | 1 0.330000 0.330000 *** Number of Krylov iterations: 23 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu/dolfinx-scaling-test on a named codethink04-arm64 with 3 processors, by pbuilder1 Fri May 24 22:13:08 2024 Using Petsc Release Version 3.20.6, Mar 29, 2024 Max Max/Min Avg Total Time (sec): 1.007e+01 1.000 1.006e+01 Objects: 0.000e+00 0.000 0.000e+00 Flops: 2.262e+08 1.058 2.214e+08 6.643e+08 Flops/sec: 2.248e+07 1.058 2.200e+07 6.600e+07 MPI Msg Count: 9.190e+02 1.039 8.960e+02 2.688e+03 MPI Msg Len (bytes): 7.147e+06 1.477 6.555e+03 1.762e+07 MPI Reductions: 5.440e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.0065e+01 100.0% 6.6425e+08 100.0% 2.688e+03 100.0% 6.555e+03 100.0% 5.260e+02 96.7% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 121 1.0 1.6349e-02 2.8 0.00e+00 0.0 2.2e+02 4.0e+00 1.2e+02 0 0 8 0 22 0 0 8 0 23 0 BuildTwoSidedF 86 1.0 1.6219e-02 2.8 0.00e+00 0.0 1.2e+02 3.5e+04 8.6e+01 0 0 4 24 16 0 0 4 24 16 0 MatMult 235 1.0 6.8698e-02 1.0 1.33e+08 1.1 1.4e+03 5.6e+03 0.0e+00 1 58 52 45 0 1 58 52 45 0 5598 MatMultAdd 48 1.0 7.8922e-03 1.1 1.09e+07 1.1 1.9e+02 1.4e+03 0.0e+00 0 5 7 1 0 0 5 7 1 0 4070 MatMultTranspose 48 1.0 8.2941e-03 1.1 1.09e+07 1.1 1.9e+02 1.4e+03 0.0e+00 0 5 7 1 0 0 5 7 1 0 3877 MatSolve 24 0.0 1.9520e-03 0.0 1.88e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 961 MatLUFactorSym 1 1.0 9.9201e-04 42.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 1.7411e-03 1554.6 4.48e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2573 MatConvert 1 1.0 1.5848e-04 1.0 0.00e+00 0.0 1.2e+01 7.1e+02 1.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatScale 4 1.0 3.9952e-04 1.0 4.55e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 3350 MatResidual 48 1.0 1.2620e-02 1.0 2.59e+07 1.1 2.9e+02 5.3e+03 0.0e+00 0 11 11 9 0 0 11 11 9 0 5940 MatAssemblyBegin 59 1.0 2.5513e-02 1.6 0.00e+00 0.0 1.2e+02 3.5e+04 3.0e+01 0 0 4 24 6 0 0 4 24 6 0 MatAssemblyEnd 59 1.0 1.9669e-02 1.1 7.86e+04 1.8 2.1e+02 3.8e+02 1.2e+02 0 0 8 0 22 0 0 8 0 23 10 MatGetRowIJ 1 0.0 3.4440e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 2 1.0 2.9085e-03 1.0 0.00e+00 0.0 1.4e+01 2.2e+04 3.0e+01 0 0 1 2 6 0 0 1 2 6 0 MatGetOrdering 1 0.0 7.8640e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 6.9932e-03 1.0 1.38e+05 1.0 2.8e+02 6.2e+02 1.0e+02 0 0 11 1 19 0 0 11 1 20 58 MatZeroEntries 3 1.0 8.0240e-05 2.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 4.4176e-04 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 4 1.0 5.6203e-03 1.0 1.15e+05 1.1 2.4e+01 4.0e+02 1.4e+01 0 0 1 0 3 0 0 1 0 3 60 MatTranspose 10 1.0 4.2524e-03 1.1 0.00e+00 0.0 1.3e+02 1.6e+03 3.6e+01 0 0 5 1 7 0 0 5 1 7 0 MatMatMultSym 9 1.0 2.8049e-02 1.0 0.00e+00 0.0 7.5e+01 8.2e+03 3.0e+01 0 0 3 3 6 0 0 3 3 6 0 MatMatMultNum 3 1.0 6.5626e-03 1.0 6.49e+06 1.1 1.5e+01 2.5e+04 3.0e+00 0 3 1 2 1 0 3 1 2 1 2859 MatPtAPSymbolic 3 1.0 8.0955e-02 1.0 0.00e+00 0.0 9.9e+01 3.4e+04 2.1e+01 1 0 4 19 4 1 0 4 19 4 0 MatPtAPNumeric 3 1.0 9.9447e-02 1.0 5.10e+07 1.1 6.6e+01 4.0e+04 1.8e+01 1 22 2 15 3 1 22 2 15 3 1491 MatGetLocalMat 9 1.0 1.4285e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 9 1.0 2.6331e-03 1.1 0.00e+00 0.0 1.1e+02 3.2e+04 0.0e+00 0 0 4 21 0 0 0 4 21 0 0 VecMDot 20 1.0 5.4056e-04 1.4 1.20e+06 1.1 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 6488 VecTDot 48 1.0 8.7308e-04 1.6 9.80e+05 1.1 0.0e+00 0.0e+00 4.8e+01 0 0 0 0 9 0 0 0 0 9 3298 VecNorm 46 1.0 7.7365e-04 1.2 7.28e+05 1.1 0.0e+00 0.0e+00 4.6e+01 0 0 0 0 8 0 0 0 0 9 2768 VecScale 22 1.0 4.9960e-05 1.1 1.20e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 7020 VecCopy 148 1.0 3.2256e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 169 1.0 1.5368e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 48 1.0 3.8300e-04 1.0 9.61e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 7373 VecAYPX 310 1.0 1.6567e-03 1.0 2.53e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 4492 VecAXPBYCZ 96 1.0 5.9916e-04 1.1 2.61e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 12771 VecMAXPY 22 1.0 3.0848e-04 1.1 1.41e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 13437 VecAssemblyBegin 57 1.0 4.3224e-04 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 5.6e+01 0 0 0 0 10 0 0 0 0 11 0 VecAssemblyEnd 57 1.0 2.8760e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 214 1.0 1.3308e-03 1.1 1.16e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2563 VecScatterBegin 388 1.0 2.0917e-03 1.1 0.00e+00 0.0 2.0e+03 4.4e+03 0.0e+00 0 0 73 49 0 0 0 73 49 0 0 VecScatterEnd 388 1.0 8.8913e-03 1.6 1.37e+04 1.5 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 4 VecNormalize 22 1.0 3.1124e-04 1.3 3.59e+05 1.1 0.0e+00 0.0e+00 2.2e+01 0 0 0 0 4 0 0 0 0 4 3380 SFSetGraph 35 1.0 1.2888e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 35 1.0 9.9773e-04 1.1 0.00e+00 0.0 3.2e+02 3.7e+02 3.5e+01 0 0 12 1 6 0 0 12 1 7 0 SFBcastBegin 14 1.0 4.8960e-05 1.1 0.00e+00 0.0 8.4e+01 6.7e+02 0.0e+00 0 0 3 0 0 0 0 3 0 0 0 SFBcastEnd 14 1.0 4.3840e-05 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 4 1.0 1.1796e-04 1.0 0.00e+00 0.0 1.8e+01 5.5e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 SFReduceEnd 4 1.0 1.3440e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 406 1.0 6.8168e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 406 1.0 2.5576e-04 1.1 1.37e+04 1.5 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 129 KSPSetUp 7 1.0 9.8080e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 9.1740e-02 1.0 1.54e+08 1.1 1.7e+03 4.7e+03 9.6e+01 1 68 62 44 18 1 68 62 44 18 4900 KSPGMRESOrthog 20 1.0 8.3976e-04 1.3 2.39e+06 1.1 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 8353 PCSetUp_GAMG+ 1 1.0 2.3933e-01 1.0 7.19e+07 1.1 9.5e+02 9.1e+03 3.8e+02 2 31 35 49 70 2 31 35 49 72 872 PCGAMGCreateG 2 1.0 1.0272e-02 1.0 5.03e+04 1.0 1.3e+02 1.6e+03 5.0e+01 0 0 5 1 9 0 0 5 1 10 14 GAMG Coarsen 2 1.0 7.3646e-03 1.0 1.38e+05 1.0 2.8e+02 6.2e+02 1.0e+02 0 0 11 1 19 0 0 11 1 20 55 GAMG MIS/Agg 2 1.0 7.0128e-03 1.0 1.38e+05 1.0 2.8e+02 6.2e+02 1.0e+02 0 0 11 1 19 0 0 11 1 20 58 PCGAMGProl 2 1.0 7.2343e-03 1.0 0.00e+00 0.0 1.9e+02 1.7e+03 7.6e+01 0 0 7 2 14 0 0 7 2 14 0 GAMG Prol-col 2 1.0 2.5938e-03 1.0 0.00e+00 0.0 1.7e+02 6.8e+02 5.6e+01 0 0 6 1 10 0 0 6 1 11 0 GAMG Prol-lift 2 1.0 4.5016e-03 1.0 0.00e+00 0.0 2.4e+01 9.1e+03 1.2e+01 0 0 1 1 2 0 0 1 1 2 0 PCGAMGOptProl 2 1.0 3.3665e-02 1.0 2.08e+07 1.1 1.9e+02 8.5e+03 6.6e+01 0 9 7 9 12 0 9 7 9 13 1791 GAMG smooth 2 1.0 2.3736e-02 1.0 7.00e+06 1.1 7.2e+01 1.4e+04 2.4e+01 0 3 3 6 4 0 3 3 6 5 854 PCGAMGCreateL 2 1.0 1.7984e-01 1.0 5.09e+07 1.1 1.5e+02 4.2e+04 8.1e+01 2 22 6 36 15 2 22 6 36 15 822 GAMG PtAP 2 1.0 1.7654e-01 1.0 5.09e+07 1.1 1.2e+02 5.0e+04 2.6e+01 2 22 4 34 5 2 22 4 34 5 838 GAMG Reduce 1 1.0 3.3612e-03 1.0 0.00e+00 0.0 2.9e+01 1.1e+04 5.5e+01 0 0 1 2 10 0 0 1 2 10 0 PCGAMG Gal l00 1 1.0 1.2779e-01 1.0 3.62e+07 1.1 6.0e+01 7.0e+04 1.3e+01 1 16 2 24 2 1 16 2 24 2 825 PCGAMG Opt l00 1 1.0 1.6310e-02 1.0 5.08e+06 1.0 3.6e+01 2.2e+04 1.1e+01 0 2 1 4 2 0 2 1 4 2 921 PCGAMG Gal l01 1 1.0 4.8742e-02 1.0 1.59e+07 1.3 6.0e+01 2.9e+04 1.3e+01 0 6 2 10 2 0 6 2 10 2 871 PCGAMG Opt l01 1 1.0 3.4912e-03 1.0 1.40e+06 1.2 3.6e+01 5.5e+03 1.1e+01 0 1 1 1 2 0 1 1 1 2 1066 PCSetUp 2 1.0 2.4219e-01 1.0 7.29e+07 1.1 9.5e+02 9.1e+03 3.8e+02 2 32 35 49 70 2 32 35 49 72 880 PCSetUpOnBlocks 24 1.0 2.9221e-03 19.6 4.48e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1533 PCApply 24 1.0 8.0099e-02 1.0 1.32e+08 1.1 1.5e+03 4.3e+03 2.4e+01 1 58 57 38 4 1 58 57 38 5 4797 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 12 12 Matrix 108 108 Matrix Coarsen 2 2 Matrix Null Space 1 1 Index Set 75 75 IS L to G Mapping 6 6 Vector 187 187 Star Forest Graph 43 43 Krylov Solver 7 7 Preconditioner 7 7 Viewer 2 2 PetscRandom 2 2 Distributed Mesh 4 4 Discrete System 4 4 Weak Form 4 4 ======================================================================================================================== Average time to get PetscTime(): 3.6e-08 Average time for MPI_Barrier(): 1.352e-06 Average time for zero size MPI_Send(): 8.53333e-07 #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type elasticity # (source: command line) --scaling_type weak # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -matptap_via scalable # (source: command line) -mg_levels_esteig_ksp_type cg # (source: command line) -mg_levels_ksp_type chebyshev # (source: command line) -mg_levels_pc_type jacobi # (source: command line) -options_left # (source: command line) -pc_gamg_coarse_eq_limit 1000 # (source: command line) -pc_type gamg # (source: command line) #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=aarch64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/aarch64-linux-gnu/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real --PETSC_ARCH=aarch64-linux-gnu-real CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2024-05-16 19:51:32 on reproducible Machine characteristics: Linux-6.1.0-21-arm64-aarch64-with-glibc2.38 Using PETSc directory: /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/trilinos -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -L/usr/lib/aarch64-linux-gnu/openmpi/lib -L/usr/lib/aarch64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/aarch64-linux-gnu -L/lib/aarch64-linux-gnu -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -ltrilinos_ml -lfftw3 -lfftw3_mpi -llapack -lblas -ltrilinos_zoltan -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lgfortran -lm -lz -lgfortran -lm -lgfortran -lgcc_s -lstdc++ ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type elasticity # (source: command line) --scaling_type weak # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -matptap_via scalable # (source: command line) -mg_levels_esteig_ksp_type cg # (source: command line) -mg_levels_ksp_type chebyshev # (source: command line) -mg_levels_pc_type jacobi # (source: command line) -options_left # (source: command line) -pc_gamg_coarse_eq_limit 1000 # (source: command line) -pc_type gamg # (source: command line) #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 4 unused database options. They are: Option left: name:--ndofs value: 10000 source: command line Option left: name:--problem_type value: elasticity source: command line Option left: name:--scaling_type value: weak source: command line Option left: name:-mg_levels_esteig_ksp_type value: cg source: command line 2024-05-24 22:13:08.867 ( 10.185s) [RANK: 0 ] loguru.cpp:526 INFO| atexit ==== elasticity strong scaling (3 processes with ndofs=30000) ==== 2024-05-24 22:13:09.153 ( 0.069s) [RANK: 0 ] utils.cpp:94 INFO| Compute partition of cells across ranks 2024-05-24 22:13:09.153 ( 0.069s) [RANK: 0 ] graphbuild.cpp:491 INFO| Building mesh dual graph 2024-05-24 22:13:09.153 ( 0.069s) [RANK: 0 ] graphbuild.cpp:356 INFO| Build local part of mesh dual graph 2024-05-24 22:13:09.171 ( 0.086s) [RANK: 0 ] graphbuild.cpp:51 INFO| Build nonlocal part of mesh dual graph 2024-05-24 22:13:09.175 ( 0.090s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:09.175 ( 0.090s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:13:09.175 ( 0.090s) [RANK: 0 ] graphbuild.cpp:165 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 2024-05-24 22:13:09.177 ( 0.092s) [RANK: 0 ] graphbuild.cpp:503 INFO| Graph edges (local: 66332, non-local: 962) 2024-05-24 22:13:09.177 ( 0.092s) [RANK: 0 ] partitioners.cpp:315 INFO| Compute graph partition using PT-SCOTCH 2024-05-24 22:13:18.608 ( 9.524s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 3 2024-05-24 22:13:18.610 ( 9.525s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2024-05-24 22:13:18.611 ( 9.527s) [RANK: 0 ] graphbuild.cpp:356 INFO| Build local part of mesh dual graph 2024-05-24 22:13:18.624 ( 9.539s) [RANK: 0 ] ordering.cpp:204 INFO| GPS pseudo-diameter:(120) 16310-570 2024-05-24 22:13:18.625 ( 9.541s) [RANK: 0 ] Topology.cpp:1330 INFO| Create topology (single cell type) 2024-05-24 22:13:18.625 ( 9.541s) [RANK: 0 ] Topology.cpp:1044 INFO| Create topology (generalised) 2024-05-24 22:13:18.650 ( 9.565s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 3 2024-05-24 22:13:18.650 ( 9.566s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2024-05-24 22:13:18.653 ( 9.569s) [RANK: 0 ] partition.cpp:233 INFO| Compute ghost indices 2024-05-24 22:13:18.653 ( 9.569s) [RANK: 0 ] MPI.cpp:97 INFO| Computing communication graph edges (using PCX algorithm). Number of input edges: 0 2024-05-24 22:13:18.659 ( 9.574s) [RANK: 0 ] MPI.cpp:154 INFO| Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 2024-05-24 22:13:18.660 ( 9.575s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 0 2024-05-24 22:13:18.661 ( 9.576s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2024-05-24 22:13:18.665 ( 9.581s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:18.670 ( 9.585s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:13:18.670 ( 9.585s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:18.670 ( 9.585s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:13:18.671 ( 9.587s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 0 2024-05-24 22:13:18.671 ( 9.587s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2024-05-24 22:13:18.671 ( 9.587s) [RANK: 0 ] MPI.h:377 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 2024-05-24 22:13:18.671 ( 9.587s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:18.671 ( 9.587s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:13:18.671 ( 9.587s) [RANK: 0 ] MPI.h:518 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 2024-05-24 22:13:18.672 ( 9.587s) [RANK: 0 ] dofmapbuilder.cpp:166 INFO| Checking required entities per dimension 2024-05-24 22:13:18.672 ( 9.587s) [RANK: 0 ] dofmapbuilder.cpp:264 INFO| Cell type:0, dofmap:17511x4 2024-05-24 22:13:18.673 ( 9.589s) [RANK: 0 ] dofmapbuilder.cpp:320 INFO| Global index computation 2024-05-24 22:13:18.673 ( 9.589s) [RANK: 0 ] dofmapbuilder.cpp:637 INFO| Got 1 index_maps 2024-05-24 22:13:18.674 ( 9.589s) [RANK: 0 ] dofmapbuilder.cpp:644 INFO| Get global indices 2024-05-24 22:13:18.675 ( 9.591s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:18.675 ( 9.591s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (24x19x19) to be refined 0 times 2024-05-24 22:13:18.677 ( 9.592s) [RANK: 0 ]topologycomputation.cpp:748 INFO| Computing mesh entities of dimension 2 2024-05-24 22:13:18.680 ( 9.596s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:18.684 ( 9.599s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:13:18.707 ( 9.622s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:18.707 ( 9.622s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:13:18.708 ( 9.623s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (3,0) 2024-05-24 22:13:18.708 ( 9.623s) [RANK: 0 ]topologycomputation.cpp:870 INFO| Computing mesh connectivity 2 - 3 from transpose. 2024-05-24 22:13:18.708 ( 9.624s) [RANK: 0 ] dofmapbuilder.cpp:166 INFO| Checking required entities per dimension 2024-05-24 22:13:18.708 ( 9.624s) [RANK: 0 ] dofmapbuilder.cpp:264 INFO| Cell type:0, dofmap:17511x4 2024-05-24 22:13:18.710 ( 9.625s) [RANK: 0 ] dofmapbuilder.cpp:320 INFO| Global index computation 2024-05-24 22:13:18.710 ( 9.626s) [RANK: 0 ] dofmapbuilder.cpp:637 INFO| Got 1 index_maps 2024-05-24 22:13:18.710 ( 9.626s) [RANK: 0 ] dofmapbuilder.cpp:644 INFO| Get global indices 2024-05-24 22:13:18.711 ( 9.626s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:18.711 ( 9.626s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:13:18.711 ( 9.627s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (0,0) 2024-05-24 22:13:18.712 ( 9.627s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (0,0) 2024-05-24 22:13:18.712 ( 9.627s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (0,0) 2024-05-24 22:13:18.722 ( 9.638s) [RANK: 0 ] SparsityPattern.cpp:385 INFO| Column ghost size increased from 216 to 555 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.8.0 dolfinx hash: debian_1:0.8.0-6+b1 ufl hash: ea06373d6123e47e4a3c75d92f167503ae508922 petsc version: Petsc Release Version 3.20.6, Mar 29, 2024 Problem type: elasticity Scaling type: strong Num processes: 3 Num cells: 51984 (52 thousand) Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- 2024-05-24 22:13:18.811 ( 9.727s) [RANK: 0 ] petsc.cpp:700 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = -1. -1. -1. Threshold scaling factor for each level not specified = 1. AGG specific options Number of levels of aggressive coarsening 1 MIS-k aggressive coarsening MIS-2 coarsening on aggressive levels Number smoothing steps 1 Complexity: grid = 1.0714 operator = 1.27727 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 3 MPI processes type: bjacobi number of blocks = 3 Local solver information for first block is in the following KSP and PC objects on rank 0: Use -mg_coarse_ksp_view ::ascii_info_detail to display information for all blocks KSP Object: (mg_coarse_sub_) 1 MPI process type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI process type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.09566 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=222, cols=222, bs=6 package used to perform factorization: petsc total: nonzeros=44532, allocated nonzeros=44532 using I-node routines: found 61 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=222, cols=222, bs=6 total: nonzeros=40644, allocated nonzeros=40644 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 72 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=222, cols=222, bs=6 total: nonzeros=40644, allocated nonzeros=40644 total number of mallocs used during MatSetValues calls=0 using I-node (on process 0) routines: found 72 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind eigenvalue targets used: min 0.310857, max 3.41943 eigenvalues provided (min 1.81897e-06, max 3.10857) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=1920, cols=1920, bs=6 total: nonzeros=306360, allocated nonzeros=306360 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 196 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind eigenvalue targets used: min 0.257938, max 2.83732 eigenvalues provided (min 0.0700524, max 2.57938) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3428 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3428 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot ------------------------------------------------------------------------------------------------------- Build BoxMesh (tetrahedra) | 1 9.530000 9.530000 Build dofmap data | 2 0.005000 0.010000 Build sparsity | 1 0.000000 0.000000 Compute connectivity 2-0 | 1 0.000000 0.000000 Compute dof reordering map | 2 0.000000 0.000000 Compute entities of dim = 2 | 1 0.030000 0.030000 Compute graph partition (SCOTCH) | 1 9.430000 9.430000 Compute local part of mesh dual graph | 2 0.025000 0.050000 Compute local-to-local map | 1 0.000000 0.000000 Compute non-local part of mesh dual graph | 1 0.010000 0.010000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 Distribute AdjacencyList nodes to destination ranks | 1 0.010000 0.010000 Distribute row-wise data (scalable) | 1 0.000000 0.000000 GPS: create_level_structure | 6 0.000000 0.000000 Gibbs-Poole-Stockmeyer ordering | 1 0.010000 0.010000 Init MPI | 1 0.070000 0.070000 Init PETSc | 1 0.000000 0.000000 Init dofmap from element dofmap | 2 0.005000 0.010000 Init logging | 1 0.000000 0.000000 PETSc Krylov solver | 1 0.340000 0.340000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 SCOTCH: call SCOTCH_dgraphPart | 1 9.430000 9.430000 SparsityPattern::finalize | 1 0.000000 0.000000 Topology: create | 1 0.050000 0.050000 Topology: determine shared index ownership | 1 0.030000 0.030000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.010000 0.010000 ZZZ Assemble matrix | 1 0.080000 0.080000 ZZZ Assemble vector | 1 0.000000 0.000000 ZZZ Create Mesh | 1 9.530000 9.530000 ZZZ Create RHS function | 1 0.010000 0.010000 ZZZ Create boundary conditions | 1 0.000000 0.000000 ZZZ Create facets and facet->cell connectivity | 1 0.030000 0.030000 ZZZ Create forms | 1 0.000000 0.000000 ZZZ Create near-nullspace | 1 0.010000 0.010000 ZZZ FunctionSpace | 1 0.000000 0.000000 ZZZ Solve | 1 0.340000 0.340000 *** Number of Krylov iterations: 23 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu/dolfinx-scaling-test on a named codethink04-arm64 with 3 processors, by pbuilder1 Fri May 24 22:13:19 2024 Using Petsc Release Version 3.20.6, Mar 29, 2024 Max Max/Min Avg Total Time (sec): 1.000e+01 1.000 1.000e+01 Objects: 0.000e+00 0.000 0.000e+00 Flops: 2.294e+08 1.088 2.202e+08 6.605e+08 Flops/sec: 2.294e+07 1.088 2.202e+07 6.605e+07 MPI Msg Count: 8.920e+02 1.043 8.773e+02 2.632e+03 MPI Msg Len (bytes): 6.193e+06 1.305 6.464e+03 1.701e+07 MPI Reductions: 5.450e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.0000e+01 100.0% 6.6049e+08 100.0% 2.632e+03 100.0% 6.464e+03 100.0% 5.270e+02 96.7% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 121 1.0 2.6368e-02 4.0 0.00e+00 0.0 2.1e+02 4.0e+00 1.2e+02 0 0 8 0 22 0 0 8 0 23 0 BuildTwoSidedF 86 1.0 2.6258e-02 3.9 0.00e+00 0.0 1.1e+02 3.8e+04 8.6e+01 0 0 4 24 16 0 0 4 24 16 0 MatMult 235 1.0 6.9584e-02 1.0 1.34e+08 1.1 1.4e+03 5.5e+03 0.0e+00 1 58 54 45 0 1 58 54 45 0 5515 MatMultAdd 48 1.0 8.0850e-03 1.1 1.11e+07 1.1 1.9e+02 1.3e+03 0.0e+00 0 5 7 1 0 0 5 7 1 0 3970 MatMultTranspose 48 1.0 8.3279e-03 1.1 1.11e+07 1.1 1.9e+02 1.3e+03 0.0e+00 0 5 7 1 0 0 5 7 1 0 3858 MatSolve 24 0.0 2.1635e-03 0.0 2.13e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 986 MatLUFactorSym 1 1.0 1.2555e-03 130.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 1.8920e-03 1433.3 4.57e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2413 MatConvert 1 1.0 1.4036e-04 1.1 0.00e+00 0.0 1.2e+01 6.9e+02 1.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatScale 4 1.0 3.7572e-04 1.1 4.60e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 3560 MatResidual 48 1.0 1.2756e-02 1.0 2.62e+07 1.1 2.9e+02 5.2e+03 0.0e+00 0 11 11 9 0 0 11 11 9 0 5862 MatAssemblyBegin 59 1.0 3.5070e-02 2.1 0.00e+00 0.0 1.1e+02 3.8e+04 3.0e+01 0 0 4 24 6 0 0 4 24 6 0 MatAssemblyEnd 59 1.0 1.8695e-02 1.0 8.37e+04 2.0 2.0e+02 4.0e+02 1.2e+02 0 0 8 0 22 0 0 8 0 23 10 MatGetRowIJ 1 0.0 3.7880e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 2 1.0 3.1885e-03 1.0 0.00e+00 0.0 1.4e+01 2.6e+04 3.0e+01 0 0 1 2 6 0 0 1 2 6 0 MatGetOrdering 1 0.0 8.8920e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 6.5488e-03 1.0 1.38e+05 1.0 2.8e+02 6.3e+02 1.0e+02 0 0 11 1 19 0 0 11 1 20 62 MatZeroEntries 3 1.0 1.3464e-04 5.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 4.5696e-04 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 4 1.0 5.5527e-03 1.0 1.15e+05 1.0 2.4e+01 3.9e+02 1.4e+01 0 0 1 0 3 0 0 1 0 3 61 MatTranspose 10 1.0 3.9583e-03 1.1 0.00e+00 0.0 1.2e+02 1.7e+03 3.6e+01 0 0 5 1 7 0 0 5 1 7 0 MatMatMultSym 9 1.0 2.7323e-02 1.1 0.00e+00 0.0 7.5e+01 8.0e+03 3.0e+01 0 0 3 4 6 0 0 3 4 6 0 MatMatMultNum 3 1.0 6.2634e-03 1.0 6.56e+06 1.1 1.5e+01 2.5e+04 3.0e+00 0 3 1 2 1 0 3 1 2 1 2988 MatPtAPSymbolic 3 1.0 8.5349e-02 1.0 0.00e+00 0.0 9.9e+01 3.1e+04 2.1e+01 1 0 4 18 4 1 0 4 18 4 0 MatPtAPNumeric 3 1.0 1.0481e-01 1.0 5.31e+07 1.2 6.6e+01 3.8e+04 1.8e+01 1 22 3 15 3 1 22 3 15 3 1383 MatGetLocalMat 9 1.0 1.3800e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 9 1.0 2.2636e-03 1.1 0.00e+00 0.0 1.1e+02 3.0e+04 0.0e+00 0 0 4 20 0 0 0 4 20 0 0 VecMDot 20 1.0 4.5320e-04 1.5 1.20e+06 1.1 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 7747 VecTDot 48 1.0 6.7340e-04 1.2 9.87e+05 1.1 0.0e+00 0.0e+00 4.8e+01 0 0 0 0 9 0 0 0 0 9 4277 VecNorm 46 1.0 7.1868e-04 1.1 7.33e+05 1.1 0.0e+00 0.0e+00 4.6e+01 0 0 0 0 8 0 0 0 0 9 2981 VecScale 22 1.0 4.5321e-05 1.0 1.20e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 7747 VecCopy 148 1.0 2.9948e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 169 1.0 1.6544e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 48 1.0 3.7992e-04 1.1 9.68e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 7433 VecAYPX 310 1.0 1.6917e-03 1.1 2.54e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 4403 VecAXPBYCZ 96 1.0 7.0601e-04 1.3 2.61e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 10851 VecMAXPY 22 1.0 2.7561e-04 1.0 1.41e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 15056 VecAssemblyBegin 57 1.0 4.3320e-04 2.2 0.00e+00 0.0 0.0e+00 0.0e+00 5.6e+01 0 0 0 0 10 0 0 0 0 11 0 VecAssemblyEnd 57 1.0 2.7720e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 214 1.0 1.3366e-03 1.1 1.16e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2555 VecScatterBegin 388 1.0 1.9201e-03 1.1 0.00e+00 0.0 1.9e+03 4.3e+03 0.0e+00 0 0 73 49 0 0 0 73 49 0 0 VecScatterEnd 388 1.0 1.1142e-02 1.7 1.34e+04 1.8 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 3 VecNormalize 22 1.0 3.1140e-04 1.3 3.59e+05 1.1 0.0e+00 0.0e+00 2.2e+01 0 0 0 0 4 0 0 0 0 4 3382 SFSetGraph 35 1.0 1.1844e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 35 1.0 6.7716e-04 1.1 0.00e+00 0.0 3.1e+02 3.8e+02 3.5e+01 0 0 12 1 6 0 0 12 1 7 0 SFBcastBegin 15 1.0 4.9320e-05 1.1 0.00e+00 0.0 9.0e+01 6.2e+02 0.0e+00 0 0 3 0 0 0 0 3 0 0 0 SFBcastEnd 15 1.0 4.6040e-05 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 4 1.0 5.0720e-05 1.1 0.00e+00 0.0 1.7e+01 5.7e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 SFReduceEnd 4 1.0 1.2960e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 407 1.0 6.3192e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 407 1.0 1.9344e-04 1.3 1.34e+04 1.8 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 165 KSPSetUp 7 1.0 9.0881e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 9.3239e-02 1.0 1.53e+08 1.1 1.7e+03 4.5e+03 9.6e+01 1 68 64 45 18 1 68 64 45 18 4817 KSPGMRESOrthog 20 1.0 7.1120e-04 1.3 2.39e+06 1.1 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 9873 PCSetUp_GAMG+ 1 1.0 2.4508e-01 1.0 7.41e+07 1.1 9.0e+02 9.1e+03 3.8e+02 2 31 34 48 70 2 31 34 48 72 838 PCGAMGCreateG 2 1.0 1.0127e-02 1.0 4.99e+04 1.0 1.3e+02 1.5e+03 5.0e+01 0 0 5 1 9 0 0 5 1 9 15 GAMG Coarsen 2 1.0 6.8948e-03 1.0 1.38e+05 1.0 2.8e+02 6.3e+02 1.0e+02 0 0 11 1 19 0 0 11 1 20 59 GAMG MIS/Agg 2 1.0 6.5661e-03 1.0 1.38e+05 1.0 2.8e+02 6.3e+02 1.0e+02 0 0 11 1 19 0 0 11 1 20 62 PCGAMGProl 2 1.0 7.2195e-03 1.0 0.00e+00 0.0 1.5e+02 2.6e+03 7.6e+01 0 0 6 2 14 0 0 6 2 14 0 GAMG Prol-col 2 1.0 2.4754e-03 1.0 0.00e+00 0.0 1.3e+02 1.0e+03 5.6e+01 0 0 5 1 10 0 0 5 1 11 0 GAMG Prol-lift 2 1.0 4.6009e-03 1.0 0.00e+00 0.0 2.0e+01 1.3e+04 1.2e+01 0 0 1 2 2 0 0 1 2 2 0 PCGAMGOptProl 2 1.0 3.0350e-02 1.0 2.10e+07 1.1 1.9e+02 8.3e+03 6.6e+01 0 9 7 9 12 0 9 7 9 13 1983 GAMG smooth 2 1.0 2.2012e-02 1.0 7.08e+06 1.1 7.2e+01 1.3e+04 2.4e+01 0 3 3 6 4 0 3 3 6 5 919 PCGAMGCreateL 2 1.0 1.8992e-01 1.0 5.30e+07 1.2 1.5e+02 4.0e+04 8.1e+01 2 22 6 35 15 2 22 6 35 15 762 GAMG PtAP 2 1.0 1.8636e-01 1.0 5.30e+07 1.2 1.2e+02 4.6e+04 2.6e+01 2 22 5 32 5 2 22 5 32 5 776 GAMG Reduce 1 1.0 3.6044e-03 1.0 0.00e+00 0.0 2.9e+01 1.3e+04 5.5e+01 0 0 1 2 10 0 0 1 2 10 0 PCGAMG Gal l00 1 1.0 1.3060e-01 1.0 3.60e+07 1.0 6.0e+01 6.4e+04 1.3e+01 1 16 2 23 2 1 16 2 23 2 808 PCGAMG Opt l00 1 1.0 1.4608e-02 1.0 5.09e+06 1.0 3.6e+01 2.1e+04 1.1e+01 0 2 1 5 2 0 2 1 5 2 1028 PCGAMG Gal l01 1 1.0 5.5754e-02 1.0 1.69e+07 1.7 6.0e+01 2.8e+04 1.3e+01 1 6 2 10 2 1 6 2 10 2 700 PCGAMG Opt l01 1 1.0 3.6465e-03 1.0 1.56e+06 1.5 3.6e+01 5.4e+03 1.1e+01 0 1 1 1 2 0 1 1 1 2 1008 PCSetUp 2 1.0 2.4834e-01 1.0 7.41e+07 1.1 9.0e+02 9.1e+03 3.8e+02 2 32 34 48 70 2 32 34 48 72 845 PCSetUpOnBlocks 24 1.0 3.3463e-03 25.3 4.57e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1364 PCApply 24 1.0 8.1853e-02 1.0 1.32e+08 1.1 1.5e+03 4.2e+03 2.4e+01 1 58 58 38 4 1 58 58 38 5 4689 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 12 12 Matrix 108 108 Matrix Coarsen 2 2 Matrix Null Space 1 1 Index Set 75 75 IS L to G Mapping 6 6 Vector 187 187 Star Forest Graph 43 43 Krylov Solver 7 7 Preconditioner 7 7 Viewer 2 2 PetscRandom 2 2 Distributed Mesh 4 4 Discrete System 4 4 Weak Form 4 4 ======================================================================================================================== Average time to get PetscTime(): 3.6e-08 Average time for MPI_Barrier(): 1.376e-06 Average time for zero size MPI_Send(): 9.06667e-07 #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type elasticity # (source: command line) --scaling_type strong # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -matptap_via scalable # (source: command line) -mg_levels_esteig_ksp_type cg # (source: command line) -mg_levels_ksp_type chebyshev # (source: command line) -mg_levels_pc_type jacobi # (source: command line) -options_left # (source: command line) -pc_gamg_coarse_eq_limit 1000 # (source: command line) -pc_type gamg # (source: command line) #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=aarch64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/aarch64-linux-gnu/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real --PETSC_ARCH=aarch64-linux-gnu-real CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2024-05-16 19:51:32 on reproducible Machine characteristics: Linux-6.1.0-21-arm64-aarch64-with-glibc2.38 Using PETSc directory: /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/trilinos -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -L/usr/lib/aarch64-linux-gnu/openmpi/lib -L/usr/lib/aarch64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/aarch64-linux-gnu -L/lib/aarch64-linux-gnu -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -ltrilinos_ml -lfftw3 -lfftw3_mpi -llapack -lblas -ltrilinos_zoltan -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lgfortran -lm -lz -lgfortran -lm -lgfortran -lgcc_s -lstdc++ ----------------------------------------- #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type elasticity # (source: command line) --scaling_type strong # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -matptap_via scalable # (source: command line) -mg_levels_esteig_ksp_type cg # (source: command line) -mg_levels_ksp_type chebyshev # (source: command line) -mg_levels_pc_type jacobi # (source: command line) -options_left # (source: command line) -pc_gamg_coarse_eq_limit 1000 # (source: command line) -pc_type gamg # (source: command line) #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 4 unused database options. They are: Option left: name:--ndofs value: 30000 source: command line Option left: name:--problem_type value: elasticity source: command line Option left: name:--scaling_type value: strong source: command line Option left: name:-mg_levels_esteig_ksp_type value: cg source: command line 2024-05-24 22:13:19.204 ( 10.120s) [RANK: 0 ] loguru.cpp:526 INFO| atexit ==== poisson weak scaling (3 processes with ndofs=10000) ==== 2024-05-24 22:13:19.500 ( 0.077s) [RANK: 0 ] utils.cpp:94 INFO| Compute partition of cells across ranks 2024-05-24 22:13:19.500 ( 0.077s) [RANK: 0 ] graphbuild.cpp:491 INFO| Building mesh dual graph 2024-05-24 22:13:19.500 ( 0.077s) [RANK: 0 ] graphbuild.cpp:356 INFO| Build local part of mesh dual graph 2024-05-24 22:13:19.570 ( 0.147s) [RANK: 0 ] graphbuild.cpp:51 INFO| Build nonlocal part of mesh dual graph 2024-05-24 22:13:19.572 ( 0.149s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:19.572 ( 0.149s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:13:19.572 ( 0.149s) [RANK: 0 ] graphbuild.cpp:165 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 2024-05-24 22:13:19.575 ( 0.152s) [RANK: 0 ] graphbuild.cpp:503 INFO| Graph edges (local: 210000, non-local: 1800) 2024-05-24 22:13:19.575 ( 0.152s) [RANK: 0 ] partitioners.cpp:315 INFO| Compute graph partition using PT-SCOTCH 2024-05-24 22:13:34.935 ( 15.512s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 3 2024-05-24 22:13:34.936 ( 15.513s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2024-05-24 22:13:34.942 ( 15.519s) [RANK: 0 ] graphbuild.cpp:356 INFO| Build local part of mesh dual graph 2024-05-24 22:13:35.004 ( 15.581s) [RANK: 0 ] ordering.cpp:204 INFO| GPS pseudo-diameter:(168) 3632-51833 2024-05-24 22:13:35.010 ( 15.587s) [RANK: 0 ] Topology.cpp:1330 INFO| Create topology (single cell type) 2024-05-24 22:13:35.010 ( 15.587s) [RANK: 0 ] Topology.cpp:1044 INFO| Create topology (generalised) 2024-05-24 22:13:35.029 ( 15.606s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 3 2024-05-24 22:13:35.029 ( 15.606s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2024-05-24 22:13:35.040 ( 15.617s) [RANK: 0 ] partition.cpp:233 INFO| Compute ghost indices 2024-05-24 22:13:35.040 ( 15.617s) [RANK: 0 ] MPI.cpp:97 INFO| Computing communication graph edges (using PCX algorithm). Number of input edges: 0 2024-05-24 22:13:35.041 ( 15.618s) [RANK: 0 ] MPI.cpp:154 INFO| Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 2024-05-24 22:13:35.044 ( 15.621s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 0 2024-05-24 22:13:35.044 ( 15.621s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2024-05-24 22:13:35.055 ( 15.632s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:35.057 ( 15.634s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:13:35.057 ( 15.634s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:35.057 ( 15.634s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:13:35.059 ( 15.636s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 0 2024-05-24 22:13:35.059 ( 15.636s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2024-05-24 22:13:35.059 ( 15.636s) [RANK: 0 ] MPI.h:377 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 2024-05-24 22:13:35.060 ( 15.637s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:35.060 ( 15.637s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:13:35.060 ( 15.637s) [RANK: 0 ] MPI.h:518 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 2024-05-24 22:13:35.060 ( 15.637s) [RANK: 0 ] dofmapbuilder.cpp:166 INFO| Checking required entities per dimension 2024-05-24 22:13:35.060 ( 15.637s) [RANK: 0 ] dofmapbuilder.cpp:264 INFO| Cell type:0, dofmap:53189x4 2024-05-24 22:13:35.065 ( 15.642s) [RANK: 0 ] dofmapbuilder.cpp:320 INFO| Global index computation 2024-05-24 22:13:35.065 ( 15.642s) [RANK: 0 ] dofmapbuilder.cpp:637 INFO| Got 1 index_maps 2024-05-24 22:13:35.065 ( 15.642s) [RANK: 0 ] dofmapbuilder.cpp:644 INFO| Get global indices 2024-05-24 22:13:35.066 ( 15.643s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:35.066 ( 15.643s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:13:35.068 ( 15.645s) [RANK: 0 ]topologycomputation.cpp:748 INFO| Computing mesh entities of dimension 2 UnitCube (30x30x30) to be refined 0 times 2024-05-24 22:13:35.078 ( 15.655s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:35.079 ( 15.656s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:13:35.109 ( 15.686s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:35.109 ( 15.686s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:13:35.111 ( 15.688s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (3,0) 2024-05-24 22:13:35.111 ( 15.688s) [RANK: 0 ]topologycomputation.cpp:870 INFO| Computing mesh connectivity 2 - 3 from transpose. 2024-05-24 22:13:35.112 ( 15.689s) [RANK: 0 ] dofmapbuilder.cpp:166 INFO| Checking required entities per dimension 2024-05-24 22:13:35.112 ( 15.689s) [RANK: 0 ] dofmapbuilder.cpp:264 INFO| Cell type:0, dofmap:53189x4 2024-05-24 22:13:35.117 ( 15.694s) [RANK: 0 ] dofmapbuilder.cpp:320 INFO| Global index computation 2024-05-24 22:13:35.117 ( 15.694s) [RANK: 0 ] dofmapbuilder.cpp:637 INFO| Got 1 index_maps 2024-05-24 22:13:35.117 ( 15.694s) [RANK: 0 ] dofmapbuilder.cpp:644 INFO| Get global indices 2024-05-24 22:13:35.118 ( 15.695s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:35.118 ( 15.695s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:13:35.118 ( 15.695s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (0,0) 2024-05-24 22:13:35.118 ( 15.695s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (0,0) 2024-05-24 22:13:35.118 ( 15.695s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (0,0) 2024-05-24 22:13:35.136 ( 15.713s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (3,0) 2024-05-24 22:13:35.136 ( 15.713s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (2,0) 2024-05-24 22:13:35.152 ( 15.729s) [RANK: 0 ] SparsityPattern.cpp:385 INFO| Column ghost size increased from 459 to 1250 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.8.0 dolfinx hash: debian_1:0.8.0-6+b1 ufl hash: ea06373d6123e47e4a3c75d92f167503ae508922 petsc version: Petsc Release Version 3.20.6, Mar 29, 2024 Problem type: poisson Scaling type: weak Num processes: 3 Num cells: 162000 (162 thousand) Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- 2024-05-24 22:13:35.198 ( 15.775s) [RANK: 0 ] petsc.cpp:700 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Maximum size of coarsest grid 9 Minimum size of coarsest grid 1 Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical SpGEMM type hypre linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=29791, cols=29791 total: nonzeros=424171, allocated nonzeros=424171 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh (tetrahedra) | 1 15.570000 15.570000 Build dofmap data | 2 0.005000 0.010000 Build sparsity | 1 0.000000 0.000000 Compute connectivity 2-0 | 1 0.000000 0.000000 Compute dof reordering map | 2 0.000000 0.000000 Compute entities of dim = 2 | 1 0.040000 0.040000 Compute graph partition (SCOTCH) | 1 15.350000 15.350000 Compute local part of mesh dual graph | 2 0.070000 0.140000 Compute local-to-local map | 1 0.010000 0.010000 Compute non-local part of mesh dual graph | 1 0.020000 0.020000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 Distribute AdjacencyList nodes to destination ranks | 1 0.030000 0.030000 Distribute row-wise data (scalable) | 1 0.000000 0.000000 GPS: create_level_structure | 3 0.002000 0.010000 Gibbs-Poole-Stockmeyer ordering | 1 0.010000 0.010000 Init MPI | 1 0.070000 0.070000 Init PETSc | 1 0.010000 0.010000 Init dofmap from element dofmap | 2 0.005000 0.010000 Init logging | 1 0.000000 0.000000 PETSc Krylov solver | 1 0.200000 0.200000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 SCOTCH: call SCOTCH_dgraphPart | 1 15.350000 15.350000 SparsityPattern::finalize | 1 0.010000 0.010000 Topology: create | 1 0.080000 0.080000 Topology: determine shared index ownership | 1 0.050000 0.050000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.010000 0.010000 ZZZ Assemble | 1 0.080000 0.080000 ZZZ Assemble matrix | 1 0.030000 0.030000 ZZZ Assemble vector | 1 0.010000 0.010000 ZZZ Create Mesh | 1 15.570000 15.570000 ZZZ Create RHS function | 1 0.020000 0.020000 ZZZ Create boundary conditions | 1 0.000000 0.000000 ZZZ Create facets and facet->cell connectivity | 1 0.040000 0.040000 ZZZ FunctionSpace | 1 0.010000 0.010000 ZZZ Solve | 1 0.200000 0.200000 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu/dolfinx-scaling-test on a named codethink04-arm64 with 3 processors, by pbuilder1 Fri May 24 22:13:35 2024 Using Petsc Release Version 3.20.6, Mar 29, 2024 Max Max/Min Avg Total Time (sec): 1.590e+01 1.000 1.590e+01 Objects: 0.000e+00 0.000 0.000e+00 Flops: 3.528e+06 1.023 3.489e+06 1.047e+07 Flops/sec: 2.218e+05 1.023 2.194e+05 6.581e+05 MPI Msg Count: 3.000e+01 1.000 3.000e+01 9.000e+01 MPI Msg Len (bytes): 1.853e+05 1.192 5.786e+03 5.208e+05 MPI Reductions: 7.000e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.5905e+01 100.0% 1.0467e+07 100.0% 9.000e+01 100.0% 5.786e+03 100.0% 5.200e+01 74.3% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 5 1.0 2.2656e-03 40.5 0.00e+00 0.0 2.4e+01 4.0e+00 5.0e+00 0 0 27 0 7 0 0 27 0 10 0 BuildTwoSidedF 2 1.0 2.2636e-03 40.7 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 MatMult 7 1.0 1.7092e-03 1.0 1.93e+06 1.0 4.2e+01 5.5e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 3352 MatConvert 1 1.0 7.0752e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 MatAssemblyBegin 5 1.0 3.6048e-03 2.4 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 MatAssemblyEnd 5 1.0 2.8796e-03 1.0 3.68e+03 1.2 1.2e+01 1.4e+03 5.0e+00 0 0 13 3 7 0 0 13 3 10 4 MatGetRowIJ 4 1.0 2.0400e-06 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 2.3288e-04 4.6 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 MatSetPreallCOO 2 1.0 4.3460e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatSetValuesCOO 2 1.0 7.3024e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecTDot 16 1.0 1.9408e-04 1.2 3.21e+05 1.0 0.0e+00 0.0e+00 1.6e+01 0 9 0 0 23 0 9 0 0 31 4912 VecNorm 8 1.0 1.9752e-04 1.5 1.60e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 11 0 5 0 0 15 2413 VecCopy 2 1.0 1.6440e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 9 1.0 2.2881e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 14 1.0 1.4344e-04 1.0 2.81e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 5815 VecAYPX 6 1.0 7.3840e-05 1.1 1.20e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 4841 VecScatterBegin 7 1.0 1.3276e-04 1.0 0.00e+00 0.0 4.2e+01 5.5e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 VecScatterEnd 7 1.0 2.0748e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 3.5760e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 3 1.0 1.0068e-04 1.0 0.00e+00 0.0 3.6e+01 8.1e+02 3.0e+00 0 0 40 6 4 0 0 40 6 6 0 SFPack 7 1.0 2.7240e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 7 1.0 2.0000e-06 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSetUp 1 1.0 2.4720e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 7.4381e-02 1.0 2.81e+06 1.0 4.2e+01 5.5e+03 2.4e+01 0 80 47 45 34 0 80 47 45 46 112 PCSetUp 1 1.0 1.2602e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 1 0 0 0 3 1 0 0 0 4 0 PCApply 8 1.0 7.2003e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 2 2 Matrix 7 7 Index Set 6 6 IS L to G Mapping 3 3 Vector 12 12 Star Forest Graph 3 3 Krylov Solver 1 1 Preconditioner 1 1 Viewer 1 1 ======================================================================================================================== Average time to get PetscTime(): 3.2e-08 Average time for MPI_Barrier(): 1.384e-06 Average time for zero size MPI_Send(): 1.94667e-06 #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type poisson # (source: command line) --scaling_type weak # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -options_left # (source: command line) -pc_hypre_boomeramg_strong_threshold 0.5 # (source: command line) -pc_hypre_type boomeramg # (source: command line) -pc_type hypre # (source: command line) #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=aarch64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/aarch64-linux-gnu/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real --PETSC_ARCH=aarch64-linux-gnu-real CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2024-05-16 19:51:32 on reproducible Machine characteristics: Linux-6.1.0-21-arm64-aarch64-with-glibc2.38 Using PETSc directory: /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/trilinos -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -L/usr/lib/aarch64-linux-gnu/openmpi/lib -L/usr/lib/aarch64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/aarch64-linux-gnu -L/lib/aarch64-linux-gnu -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -ltrilinos_ml -lfftw3 -lfftw3_mpi -llapack -lblas -ltrilinos_zoltan -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lgfortran -lm -lz -lgfortran -lm -lgfortran -lgcc_s -lstdc++ ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type poisson # (source: command line) --scaling_type weak # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -options_left # (source: command line) -pc_hypre_boomeramg_strong_threshold 0.5 # (source: command line) -pc_hypre_type boomeramg # (source: command line) -pc_type hypre # (source: command line) #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 10000 source: command line Option left: name:--problem_type value: poisson source: command line Option left: name:--scaling_type value: weak source: command line 2024-05-24 22:13:35.453 ( 16.030s) [RANK: 0 ] loguru.cpp:526 INFO| atexit ==== poisson strong scaling (3 processes with ndofs=30000) ==== 2024-05-24 22:13:35.727 ( 0.051s) [RANK: 0 ] utils.cpp:94 INFO| Compute partition of cells across ranks 2024-05-24 22:13:35.727 ( 0.051s) [RANK: 0 ] graphbuild.cpp:491 INFO| Building mesh dual graph 2024-05-24 22:13:35.727 ( 0.051s) [RANK: 0 ] graphbuild.cpp:356 INFO| Build local part of mesh dual graph 2024-05-24 22:13:35.764 ( 0.088s) [RANK: 0 ] graphbuild.cpp:51 INFO| Build nonlocal part of mesh dual graph 2024-05-24 22:13:35.765 ( 0.089s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:35.765 ( 0.089s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:13:35.765 ( 0.089s) [RANK: 0 ] graphbuild.cpp:165 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 2024-05-24 22:13:35.767 ( 0.091s) [RANK: 0 ] graphbuild.cpp:503 INFO| Graph edges (local: 210000, non-local: 1800) 2024-05-24 22:13:35.767 ( 0.091s) [RANK: 0 ] partitioners.cpp:315 INFO| Compute graph partition using PT-SCOTCH 2024-05-24 22:13:50.967 ( 15.291s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 3 2024-05-24 22:13:50.968 ( 15.291s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2024-05-24 22:13:50.974 ( 15.298s) [RANK: 0 ] graphbuild.cpp:356 INFO| Build local part of mesh dual graph 2024-05-24 22:13:51.052 ( 15.376s) [RANK: 0 ] ordering.cpp:204 INFO| GPS pseudo-diameter:(152) 3603-44589 2024-05-24 22:13:51.060 ( 15.383s) [RANK: 0 ] Topology.cpp:1330 INFO| Create topology (single cell type) 2024-05-24 22:13:51.060 ( 15.383s) [RANK: 0 ] Topology.cpp:1044 INFO| Create topology (generalised) 2024-05-24 22:13:51.063 ( 15.386s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 3 2024-05-24 22:13:51.063 ( 15.387s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2024-05-24 22:13:51.075 ( 15.399s) [RANK: 0 ] partition.cpp:233 INFO| Compute ghost indices 2024-05-24 22:13:51.075 ( 15.399s) [RANK: 0 ] MPI.cpp:97 INFO| Computing communication graph edges (using PCX algorithm). Number of input edges: 0 2024-05-24 22:13:51.075 ( 15.399s) [RANK: 0 ] MPI.cpp:154 INFO| Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 2024-05-24 22:13:51.078 ( 15.402s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 0 2024-05-24 22:13:51.079 ( 15.402s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2024-05-24 22:13:51.091 ( 15.414s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:51.091 ( 15.414s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:13:51.091 ( 15.415s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:51.091 ( 15.415s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:13:51.093 ( 15.417s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 0 2024-05-24 22:13:51.094 ( 15.417s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2024-05-24 22:13:51.094 ( 15.417s) [RANK: 0 ] MPI.h:377 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 2024-05-24 22:13:51.094 ( 15.418s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:51.094 ( 15.418s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:13:51.094 ( 15.418s) [RANK: 0 ] MPI.h:518 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 2024-05-24 22:13:51.095 ( 15.418s) [RANK: 0 ] dofmapbuilder.cpp:166 INFO| Checking required entities per dimension 2024-05-24 22:13:51.095 ( 15.418s) [RANK: 0 ] dofmapbuilder.cpp:264 INFO| Cell type:0, dofmap:53190x4 2024-05-24 22:13:51.099 ( 15.423s) [RANK: 0 ] dofmapbuilder.cpp:320 INFO| Global index computation 2024-05-24 22:13:51.100 ( 15.423s) [RANK: 0 ] dofmapbuilder.cpp:637 INFO| Got 1 index_maps 2024-05-24 22:13:51.100 ( 15.424s) [RANK: 0 ] dofmapbuilder.cpp:644 INFO| Get global indices 2024-05-24 22:13:51.100 ( 15.424s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:51.100 ( 15.424s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (30x30x30) to be refined 0 times 2024-05-24 22:13:51.103 ( 15.427s) [RANK: 0 ]topologycomputation.cpp:748 INFO| Computing mesh entities of dimension 2 2024-05-24 22:13:51.113 ( 15.437s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:51.114 ( 15.438s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:13:51.146 ( 15.470s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:51.146 ( 15.470s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:13:51.148 ( 15.472s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (3,0) 2024-05-24 22:13:51.148 ( 15.472s) [RANK: 0 ]topologycomputation.cpp:870 INFO| Computing mesh connectivity 2 - 3 from transpose. 2024-05-24 22:13:51.149 ( 15.473s) [RANK: 0 ] dofmapbuilder.cpp:166 INFO| Checking required entities per dimension 2024-05-24 22:13:51.149 ( 15.473s) [RANK: 0 ] dofmapbuilder.cpp:264 INFO| Cell type:0, dofmap:53190x4 2024-05-24 22:13:51.153 ( 15.477s) [RANK: 0 ] dofmapbuilder.cpp:320 INFO| Global index computation 2024-05-24 22:13:51.154 ( 15.477s) [RANK: 0 ] dofmapbuilder.cpp:637 INFO| Got 1 index_maps 2024-05-24 22:13:51.154 ( 15.478s) [RANK: 0 ] dofmapbuilder.cpp:644 INFO| Get global indices 2024-05-24 22:13:51.154 ( 15.478s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2024-05-24 22:13:51.154 ( 15.478s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-05-24 22:13:51.155 ( 15.479s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (0,0) 2024-05-24 22:13:51.155 ( 15.479s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (0,0) 2024-05-24 22:13:51.155 ( 15.479s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (0,0) 2024-05-24 22:13:51.173 ( 15.497s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (3,0) 2024-05-24 22:13:51.173 ( 15.497s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (2,0) 2024-05-24 22:13:51.190 ( 15.514s) [RANK: 0 ] SparsityPattern.cpp:385 INFO| Column ghost size increased from 471 to 1274 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.8.0 dolfinx hash: debian_1:0.8.0-6+b1 ufl hash: ea06373d6123e47e4a3c75d92f167503ae508922 petsc version: Petsc Release Version 3.20.6, Mar 29, 2024 Problem type: poisson Scaling type: strong Num processes: 3 Num cells: 162000 (162 thousand) Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- 2024-05-24 22:13:51.236 ( 15.559s) [RANK: 0 ] petsc.cpp:700 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Maximum size of coarsest grid 9 Minimum size of coarsest grid 1 Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical SpGEMM type hypre linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=29791, cols=29791 total: nonzeros=424171, allocated nonzeros=424171 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh (tetrahedra) | 1 15.380000 15.380000 Build dofmap data | 2 0.005000 0.010000 Build sparsity | 1 0.010000 0.010000 Compute connectivity 2-0 | 1 0.000000 0.000000 Compute dof reordering map | 2 0.000000 0.000000 Compute entities of dim = 2 | 1 0.050000 0.050000 Compute graph partition (SCOTCH) | 1 15.190000 15.190000 Compute local part of mesh dual graph | 2 0.055000 0.110000 Compute local-to-local map | 1 0.000000 0.000000 Compute non-local part of mesh dual graph | 1 0.010000 0.010000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 Distribute AdjacencyList nodes to destination ranks | 1 0.030000 0.030000 Distribute row-wise data (scalable) | 1 0.000000 0.000000 GPS: create_level_structure | 2 0.000000 0.000000 Gibbs-Poole-Stockmeyer ordering | 1 0.010000 0.010000 Init MPI | 1 0.050000 0.050000 Init PETSc | 1 0.010000 0.010000 Init dofmap from element dofmap | 2 0.005000 0.010000 Init logging | 1 0.000000 0.000000 PETSc Krylov solver | 1 0.200000 0.200000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 SCOTCH: call SCOTCH_dgraphPart | 1 15.190000 15.190000 SparsityPattern::finalize | 1 0.010000 0.010000 Topology: create | 1 0.070000 0.070000 Topology: determine shared index ownership | 1 0.040000 0.040000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.000000 0.000000 ZZZ Assemble | 1 0.080000 0.080000 ZZZ Assemble matrix | 1 0.040000 0.040000 ZZZ Assemble vector | 1 0.000000 0.000000 ZZZ Create Mesh | 1 15.380000 15.380000 ZZZ Create RHS function | 1 0.010000 0.010000 ZZZ Create boundary conditions | 1 0.010000 0.010000 ZZZ Create facets and facet->cell connectivity | 1 0.050000 0.050000 ZZZ FunctionSpace | 1 0.000000 0.000000 ZZZ Solve | 1 0.210000 0.210000 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu/dolfinx-scaling-test on a named codethink04-arm64 with 3 processors, by pbuilder1 Fri May 24 22:13:51 2024 Using Petsc Release Version 3.20.6, Mar 29, 2024 Max Max/Min Avg Total Time (sec): 1.572e+01 1.000 1.572e+01 Objects: 0.000e+00 0.000 0.000e+00 Flops: 3.564e+06 1.036 3.489e+06 1.047e+07 Flops/sec: 2.267e+05 1.036 2.220e+05 6.659e+05 MPI Msg Count: 3.000e+01 1.000 3.000e+01 9.000e+01 MPI Msg Len (bytes): 1.954e+05 1.236 5.912e+03 5.321e+05 MPI Reductions: 7.000e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.5718e+01 100.0% 1.0467e+07 100.0% 9.000e+01 100.0% 5.912e+03 100.0% 5.200e+01 74.3% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 5 1.0 1.2928e-03 20.3 0.00e+00 0.0 2.4e+01 4.0e+00 5.0e+00 0 0 27 0 7 0 0 27 0 10 0 BuildTwoSidedF 2 1.0 1.2918e-03 20.5 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 MatMult 7 1.0 1.7336e-03 1.0 1.95e+06 1.0 4.2e+01 5.7e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 3305 MatConvert 1 1.0 6.7477e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 MatAssemblyBegin 5 1.0 2.6602e-03 1.5 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 MatAssemblyEnd 5 1.0 2.9333e-03 1.0 3.94e+03 1.3 1.2e+01 1.4e+03 5.0e+00 0 0 13 3 7 0 0 13 3 10 4 MatGetRowIJ 4 1.0 2.2400e-06 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 1.8128e-04 3.1 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 MatSetPreallCOO 2 1.0 4.4041e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatSetValuesCOO 2 1.0 6.8812e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecTDot 16 1.0 1.9880e-04 1.2 3.25e+05 1.0 0.0e+00 0.0e+00 1.6e+01 0 9 0 0 23 0 9 0 0 31 4795 VecNorm 8 1.0 2.3600e-04 1.6 1.62e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 11 0 5 0 0 15 2020 VecCopy 2 1.0 2.8480e-05 1.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 9 1.0 2.0520e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 14 1.0 1.1228e-04 1.0 2.84e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 7429 VecAYPX 6 1.0 7.2680e-05 1.1 1.22e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 4919 VecScatterBegin 7 1.0 1.5620e-04 1.2 0.00e+00 0.0 4.2e+01 5.7e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 VecScatterEnd 7 1.0 2.2560e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 3.6960e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 3 1.0 1.1808e-04 1.0 0.00e+00 0.0 3.6e+01 8.2e+02 3.0e+00 0 0 40 6 4 0 0 40 6 6 0 SFPack 7 1.0 2.4880e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 7 1.0 2.1200e-06 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSetUp 1 1.0 2.6241e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 7.5523e-02 1.0 2.84e+06 1.0 4.2e+01 5.7e+03 2.4e+01 0 80 47 45 34 0 80 47 45 46 111 PCSetUp 1 1.0 1.3034e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 1 0 0 0 3 1 0 0 0 4 0 PCApply 8 1.0 7.3126e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 2 2 Matrix 7 7 Index Set 6 6 IS L to G Mapping 3 3 Vector 12 12 Star Forest Graph 3 3 Krylov Solver 1 1 Preconditioner 1 1 Viewer 1 1 ======================================================================================================================== Average time to get PetscTime(): 3.2e-08 Average time for MPI_Barrier(): 1.472e-06 Average time for zero size MPI_Send(): 1.89333e-06 #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type poisson # (source: command line) --scaling_type strong # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -options_left # (source: command line) -pc_hypre_boomeramg_strong_threshold 0.5 # (source: command line) -pc_hypre_type boomeramg # (source: command line) -pc_type hypre # (source: command line) #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=aarch64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/aarch64-linux-gnu/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real --PETSC_ARCH=aarch64-linux-gnu-real CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2024-05-16 19:51:32 on reproducible Machine characteristics: Linux-6.1.0-21-arm64-aarch64-with-glibc2.38 Using PETSc directory: /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/trilinos -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -L/usr/lib/aarch64-linux-gnu/openmpi/lib -L/usr/lib/aarch64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/aarch64-linux-gnu -L/lib/aarch64-linux-gnu -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -ltrilinos_ml -lfftw3 -lfftw3_mpi -llapack -lblas -ltrilinos_zoltan -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lgfortran -lm -lz -lgfortran -lm -lgfortran -lgcc_s -lstdc++ ----------------------------------------- #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type poisson # (source: command line) --scaling_type strong # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -options_left # (source: command line) -pc_hypre_boomeramg_strong_threshold 0.5 # (source: command line) -pc_hypre_type boomeramg # (source: command line) -pc_type hypre # (source: command line) #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 30000 source: command line Option left: name:--problem_type value: poisson source: command line Option left: name:--scaling_type value: strong source: command line 2024-05-24 22:13:51.495 ( 15.819s) [RANK: 0 ] loguru.cpp:526 INFO| atexit make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake -O--sourcedirectory=src dh_prep -O--buildsystem=cmake -O--sourcedirectory=src dh_auto_install -O--buildsystem=cmake -O--sourcedirectory=src cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/fenicsx-performance-tests-0.8.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/fenicsx-performance-tests-0.8.0/src -B/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/fenicsx-performance-tests-0.8.0/debian/tmp/usr/bin/dolfinx-scaling-test make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-aarch64-linux-gnu' dh_install -O--buildsystem=cmake -O--sourcedirectory=src dh_installdocs -O--buildsystem=cmake -O--sourcedirectory=src dh_installchangelogs -O--buildsystem=cmake -O--sourcedirectory=src dh_installman -O--buildsystem=cmake -O--sourcedirectory=src dh_installsystemduser -O--buildsystem=cmake -O--sourcedirectory=src dh_perl -O--buildsystem=cmake -O--sourcedirectory=src dh_link -O--buildsystem=cmake -O--sourcedirectory=src dh_strip_nondeterminism -O--buildsystem=cmake -O--sourcedirectory=src dh_compress -O--buildsystem=cmake -O--sourcedirectory=src dh_fixperms -O--buildsystem=cmake -O--sourcedirectory=src dh_missing -O--buildsystem=cmake -O--sourcedirectory=src dh_dwz -a -O--buildsystem=cmake -O--sourcedirectory=src dh_strip -a -O--buildsystem=cmake -O--sourcedirectory=src dh_makeshlibs -a -O--buildsystem=cmake -O--sourcedirectory=src dh_shlibdeps -a -O--buildsystem=cmake -O--sourcedirectory=src dh_installdeb -O--buildsystem=cmake -O--sourcedirectory=src dh_gencontrol -O--buildsystem=cmake -O--sourcedirectory=src dh_md5sums -O--buildsystem=cmake -O--sourcedirectory=src dh_builddeb -O--buildsystem=cmake -O--sourcedirectory=src dpkg-deb: building package 'fenicsx-performance-tests' in '../fenicsx-performance-tests_0.8.0-1_arm64.deb'. dpkg-deb: building package 'fenicsx-performance-tests-dbgsym' in '../fenicsx-performance-tests-dbgsym_0.8.0-1_arm64.deb'. dpkg-deb: building package 'fenicsx-performance-tests-source' in '../fenicsx-performance-tests-source_0.8.0-1_all.deb'. dpkg-genbuildinfo --build=binary -O../fenicsx-performance-tests_0.8.0-1_arm64.buildinfo dpkg-genchanges --build=binary -O../fenicsx-performance-tests_0.8.0-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3926980 and its subdirectories I: Current time: Fri May 24 22:14:02 -12 2024 I: pbuilder-time-stamp: 1716632042 Sat May 25 10:14:04 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink01-arm64.debian.net. Sat May 25 10:14:04 UTC 2024 I: Preparing to do remote build '2' on codethink01-arm64.debian.net. Sat May 25 10:16:53 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. Sat May 25 10:16:54 UTC 2024 I: fenicsx-performance-tests_0.8.0-1_arm64.changes: Format: 1.8 Date: Sat, 04 May 2024 09:00:13 +0000 Source: fenicsx-performance-tests Binary: fenicsx-performance-tests fenicsx-performance-tests-dbgsym fenicsx-performance-tests-source Architecture: arm64 all Version: 0.8.0-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Francesco Ballarin Description: fenicsx-performance-tests - Performance test codes for FEniCS/DOLFIN-X (binaries) fenicsx-performance-tests-source - Performance test codes for FEniCS/DOLFIN-X (source) Changes: fenicsx-performance-tests (0.8.0-1) unstable; urgency=medium . * New upstream release, compatible with dolfinx 0.8.0 * Standards-Version: 4.7.0 (routine-update) * Fix Maintainer name of Debian Science team (routine-update) * Require libdolfinx-dev >= 1:0.8~ * Add Francesco Ballarin to uploaders Checksums-Sha1: a65efc57868b9cbf99e4c33de6d5184f8677cdec 5885972 fenicsx-performance-tests-dbgsym_0.8.0-1_arm64.deb 5e60f93ac75d427a658cc3ef9ad25bce15cc121a 17352 fenicsx-performance-tests-source_0.8.0-1_all.deb b0dde0a61fe57c19f79912631ade8498d9aa5d4c 15928 fenicsx-performance-tests_0.8.0-1_arm64.buildinfo ab698d4e81f40ecc063f476b6c8419f03f3615ca 238248 fenicsx-performance-tests_0.8.0-1_arm64.deb Checksums-Sha256: d2f51509b42bf3eadbe424540c4123d1849c9da58f4da3fd2674bb34beb05ea6 5885972 fenicsx-performance-tests-dbgsym_0.8.0-1_arm64.deb c9315d9163e372470fea12647e9b738a22ccc34bb1e87c1ec650c33a28bf32a9 17352 fenicsx-performance-tests-source_0.8.0-1_all.deb 659704e70909a14ccd377d78d0139adea77461384394e483a7d16b7d768d50d4 15928 fenicsx-performance-tests_0.8.0-1_arm64.buildinfo e9f0ab256bb6a2b7e382238d62c56276997164f19f2952f6dd42630722abce39 238248 fenicsx-performance-tests_0.8.0-1_arm64.deb Files: cb130d435947800c28ccf7c3dde74885 5885972 debug optional fenicsx-performance-tests-dbgsym_0.8.0-1_arm64.deb dddf6626dae7781d1d43bff724911a83 17352 libdevel optional fenicsx-performance-tests-source_0.8.0-1_all.deb d8b8bb26c3d3fdae5ccf5bcdd4e67f15 15928 libdevel optional fenicsx-performance-tests_0.8.0-1_arm64.buildinfo b2597cff3b5a6b9871da1f9ebd07b819 238248 libdevel optional fenicsx-performance-tests_0.8.0-1_arm64.deb Sat May 25 10:16:55 UTC 2024 I: diffoscope 266 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_18-42808.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.bbQy526u/fenicsx-performance-tests_0.8.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.bbQy526u/fenicsx-performance-tests_0.8.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.bbQy526u/fenicsx-performance-tests_0.8.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.bbQy526u/b1/fenicsx-performance-tests_0.8.0-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.bbQy526u/b2/fenicsx-performance-tests_0.8.0-1_arm64.changes ## close_archive (total time: 0.000s) 0.000s 20 calls diffoscope.comparators.xz.XzContainer 0.000s 10 calls diffoscope.comparators.deb.DebContainer 0.000s 14 calls diffoscope.comparators.tar.TarContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## command (total time: 426.299s) 226.710s 1060 calls readelf 171.879s 125 calls diff 25.465s 176 calls objdump 1.036s 2 calls objcopy 0.882s 60 calls xz 0.325s 22 calls strings 0.002s 18 calls cmp (internal) ## compare_files (cumulative) (total time: 1061.365s) 206.420s 1 call abc.DotChangesFile 206.381s 2 calls abc.DebFile 206.272s 4 calls abc.XzFile 205.628s 2 calls abc.DebDataTarFile 204.867s 2 calls abc.ElfFile 28.605s 8 calls diffoscope.comparators.elf.ElfCodeSection 1.660s 37 calls diffoscope.comparators.elf.ElfSection 1.426s 3 calls diffoscope.comparators.elf.ElfStringSection 0.063s 2 calls abc.TarFile 0.016s 1 call abc.TextFile 0.016s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection 0.011s 2 calls abc.Md5sumsFile ## container_extract (total time: 1.041s) 0.879s 20 calls diffoscope.comparators.xz.XzContainer 0.081s 16 calls diffoscope.comparators.deb.DebTarContainer 0.071s 24 calls diffoscope.comparators.deb.DebContainer 0.011s 18 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 0.322s) 0.322s 323 calls linediff ## has_same_content_as (total time: 0.004s) 0.001s 4 calls abc.TextFile 0.001s 2 calls abc.DebDataTarFile 0.001s 4 calls abc.Md5sumsFile 0.000s 4 calls abc.XzFile 0.000s 3 calls abc.DebFile 0.000s 37 calls diffoscope.comparators.elf.ElfSection 0.000s 2 calls abc.ElfFile 0.000s 2 calls abc.TarFile 0.000s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 1 call abc.DotChangesFile 0.000s 8 calls diffoscope.comparators.elf.ElfCodeSection 0.000s 3 calls diffoscope.comparators.elf.ElfStringSection 0.000s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection ## main (total time: 208.738s) 208.737s 2 calls outputs 0.001s 1 call cleanup ## open_archive (total time: 0.001s) 0.000s 20 calls diffoscope.comparators.xz.XzContainer 0.000s 14 calls diffoscope.comparators.tar.TarContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer 0.000s 10 calls diffoscope.comparators.deb.DebContainer ## output (total time: 1.899s) 1.889s 1 call html 0.006s 1 call text 0.004s 1 call json ## recognizes (total time: 0.805s) 0.431s 900 calls diffoscope.comparators.utils.archive.ArchiveMember 0.240s 1808 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.081s 12 calls diffoscope.comparators.binary.FilesystemFile 0.052s 324 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 0.163s) 0.163s 72 calls specialize Finished with result: success Main processes terminated with: code=exited/status=1 Service runtime: 3min 29.097s CPU time consumed: 4min 43.550s Sat May 25 10:20:25 UTC 2024 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Sat May 25 10:20:25 UTC 2024 E: fenicsx-performance-tests failed to build reproducibly in unstable on arm64. Sat May 25 10:20:26 UTC 2024 I: Submitting .buildinfo files to external archives: Sat May 25 10:20:26 UTC 2024 I: Submitting 20K b1/fenicsx-performance-tests_0.8.0-1_arm64.buildinfo.asc Sat May 25 10:20:27 UTC 2024 I: Submitting 20K b2/fenicsx-performance-tests_0.8.0-1_arm64.buildinfo.asc Sat May 25 10:20:28 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat May 25 10:20:28 UTC 2024 I: Done submitting .buildinfo files. Sat May 25 10:20:28 UTC 2024 I: Removing signed fenicsx-performance-tests_0.8.0-1_arm64.buildinfo.asc files: removed './b1/fenicsx-performance-tests_0.8.0-1_arm64.buildinfo.asc' removed './b2/fenicsx-performance-tests_0.8.0-1_arm64.buildinfo.asc'