Thu May 23 14:07:12 UTC 2024 I: starting to build wtdbg2/unstable/amd64 on jenkins on '2024-05-23 14:06' Thu May 23 14:07:12 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_30/9636/console.log Thu May 23 14:07:12 UTC 2024 I: Downloading source for unstable/wtdbg2=2.5-10 --2024-05-23 14:07:13-- http://deb.debian.org/debian/pool/main/w/wtdbg2/wtdbg2_2.5-10.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2238 (2.2K) [text/prs.lines.tag] Saving to: ‘wtdbg2_2.5-10.dsc’ 0K .. 100% 221M=0s 2024-05-23 14:07:13 (221 MB/s) - ‘wtdbg2_2.5-10.dsc’ saved [2238/2238] Thu May 23 14:07:13 UTC 2024 I: wtdbg2_2.5-10.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: wtdbg2 Binary: wtdbg2, wtdbg2-examples Architecture: amd64 all Version: 2.5-10 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/ruanjue/wtdbg2 Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/wtdbg2 Vcs-Git: https://salsa.debian.org/med-team/wtdbg2.git Testsuite: autopkgtest Testsuite-Triggers: bwa, minimap2, samtools Build-Depends: debhelper-compat (= 13), zlib1g-dev, libsimde-dev Package-List: wtdbg2 deb science optional arch=amd64 wtdbg2-examples deb science optional arch=all Checksums-Sha1: 36e07424e7a08b2571ea8580e50e736c90458335 236627 wtdbg2_2.5.orig.tar.gz 44b51a7e508f22aeabc617aafb5c0d8e29e6dd4e 121143484 wtdbg2_2.5-10.debian.tar.xz Checksums-Sha256: a2ffc8503d29f491a9a38ef63230d5b3c96db78377b5d25c91df511d0df06413 236627 wtdbg2_2.5.orig.tar.gz da3317d3c0188eb316eca98aac4827b161b881b06ad20bf19b33899e4359eff0 121143484 wtdbg2_2.5-10.debian.tar.xz Files: 0368caed7480192c42b1a4ffa1ddbb7c 236627 wtdbg2_2.5.orig.tar.gz bf5459829cc2e4296c4ef645feba3d27 121143484 wtdbg2_2.5-10.debian.tar.xz Dgit: 71f5c400cd2fce84ee1a8d356e09e14c3c6e670f debian archive/debian/2.5-10 https://git.dgit.debian.org/wtdbg2 -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmY2fQwUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpxUBAAjZ6vgaC1fFLIeygBhr7w7M1vOhM+ b3McUCjpOsYJBIG3oOlipk25tVs6Tl+F/ebFzc2GVN9KKqGIz22hXuRuFyeEuEdl DfKGIeAF0JWbxz68aLy6Lz4hRjvGC6Oew/LpbWGZFY67x2/JKId5f2GpapQlnztI LcmAtglxuNQCJ7g+6SEax6p/W98SHN0/+BTxL0wfRDc8a8h+6BwvDrrWypjhx2BL 4hVpAoSYo5ZQDmzOk7BZMMDk7Ecf3pMTH0SiABiSBaThqlIXlWzBtI4TAh6ORX2Z SH93PhyUHo2U60p+LL7iUHXLFu2FNcBmwBR1O4VQNcmGTKHTTAbNmiz9WBEVqfP5 0MqdXkfbUY1sCqKKWD37jwikPh5RvoM7selMmHqkMKnYG0rPr0fklYMJtn40qTGx aIEWW05iaSyqlJX+qmqqwY4jTXb3qGY2zRRg51WzB3IUHyk5oXnzlNRFvKn0cPVn qsFV6usZQ+F9JlYmx5/edDjYNcB0wZsHjJGcM5E64ee4ZdXW1Sf9uGODznfBKIgy FBZRziHSyM5krRhY44qEsBiv4sc0Hc76RnTudS+gAHtX7MvbBzDxV0FqzBXuuXpy jxuaQ/vVEV/UwW5/5OPI7EQQk6WTV3IuzHFbZy8zvhPMbqlqIYLt/RCLbahNawRc tbhFs78WYApTL+M= =xQYe -----END PGP SIGNATURE----- Thu May 23 14:07:13 UTC 2024 I: Checking whether the package is not for us Thu May 23 14:07:13 UTC 2024 I: Starting 1st build on remote node ionos15-amd64.debian.net. Thu May 23 14:07:13 UTC 2024 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Thu May 23 14:10:32 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jun 25 08:30:17 -12 2025 I: pbuilder-time-stamp: 1750883417 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [wtdbg2_2.5-10.dsc] I: copying [./wtdbg2_2.5.orig.tar.gz] I: copying [./wtdbg2_2.5-10.debian.tar.xz] I: Extracting source gpgv: Signature made Sat May 4 18:23:08 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./wtdbg2_2.5-10.dsc: no acceptable signature found dpkg-source: info: extracting wtdbg2 in wtdbg2-2.5 dpkg-source: info: unpacking wtdbg2_2.5.orig.tar.gz dpkg-source: info: unpacking wtdbg2_2.5-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_install.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying simde dpkg-source: info: applying scripts-tweak I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2771190/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='9d4267e313eb4c0eab913d72b2138c65' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2771190' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RjwuAiNo/pbuilderrc_UYsF --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RjwuAiNo/b1 --logfile b1/build.log wtdbg2_2.5-10.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.7.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.7.12-1~bpo12+1 (2024-05-06) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 24 14:05 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2771190/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev, libsimde-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19718 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdata-optlist-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libparams-util-perl{a} libpipeline1{a} libsimde-dev{a} libsub-exporter-perl{a} libsub-install-perl{a} libsub-override-perl{a} libsub-prototype-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 37 newly installed, 0 to remove and 0 not upgraded. Need to get 20.5 MB of archives. After unpacking 83.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.1-1 [94.1 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libparams-util-perl amd64 1.102-3 [24.0 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libsub-prototype-perl amd64 0.03-2+b2 [9744 B] Get: 25 http://deb.debian.org/debian unstable/main amd64 libsub-override-perl all 0.11-1 [10.4 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 28 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libsimde-dev all 0.8.2-1 [465 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] Fetched 20.5 MB in 3s (6341 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19718 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-4_amd64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.1-1_amd64.deb ... Unpacking bsdextrautils (2.40.1-1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.1-1_amd64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../19-libparams-util-perl_1.102-3_amd64.deb ... Unpacking libparams-util-perl (1.102-3) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../20-libsub-install-perl_0.929-1_all.deb ... Unpacking libsub-install-perl (0.929-1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../21-libdata-optlist-perl_0.114-1_all.deb ... Unpacking libdata-optlist-perl (0.114-1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../22-libsub-exporter-perl_0.990-1_all.deb ... Unpacking libsub-exporter-perl (0.990-1) ... Selecting previously unselected package libsub-prototype-perl. Preparing to unpack .../23-libsub-prototype-perl_0.03-2+b2_amd64.deb ... Unpacking libsub-prototype-perl (0.03-2+b2) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../24-libsub-override-perl_0.11-1_all.deb ... Unpacking libsub-override-perl (0.11-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../25-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../26-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../27-libelf1t64_0.191-1+b1_amd64.deb ... Unpacking libelf1t64:amd64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../28-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../29-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../30-libxml2_2.9.14+dfsg-1.3+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../31-gettext_0.21-14+b1_amd64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../32-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../33-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../34-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package libsimde-dev. Preparing to unpack .../35-libsimde-dev_0.8.2-1_all.deb ... Unpacking libsimde-dev (0.8.2-1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../36-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libsimde-dev (0.8.2-1) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up bsdextrautils (2.40.1-1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libsub-install-perl (0.929-1) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up libparams-util-perl (1.102-3) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up groff-base (1.23.0-4) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libsub-prototype-perl (0.03-2+b2) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libsub-override-perl (0.11-1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.38-11) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/wtdbg2-2.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../wtdbg2_2.5-10_source.changes dpkg-buildpackage: info: source package wtdbg2 dpkg-buildpackage: info: source version 2.5-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j42 clean make[1]: Entering directory '/build/reproducible-path/wtdbg2-2.5' rm -f *.o *.gcda *.gcno *.gcov gmon.out kbm2 wtdbg2 wtdbg-cns wtpoa-cns pgzf make[1]: Leaving directory '/build/reproducible-path/wtdbg2-2.5' debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/wtdbg2-2.5' rm -f kbm2-avx2 kbm2-avx kbm2-sse4.1 kbm2-ssse3 kbm2-sse3 kbm2-sse2 wtdbg2-avx2 wtdbg2-avx wtdbg2-sse4.1 wtdbg2-ssse3 wtdbg2-sse3 wtdbg2-sse2 wtdbg-cns-avx2 wtdbg-cns-avx wtdbg-cns-sse4.1 wtdbg-cns-ssse3 wtdbg-cns-sse3 wtdbg-cns-sse2 wtpoa-cns-avx2 wtpoa-cns-avx wtpoa-cns-sse4.1 wtpoa-cns-ssse3 wtpoa-cns-sse3 wtpoa-cns-sse2 pgzf-avx2 pgzf-avx pgzf-sse4.1 pgzf-ssse3 pgzf-sse3 pgzf-sse2 # Cleanup additional binaries built for amd64 sub architectures. : # Cleanup the wealth of files modified by sed for various typos. make[1]: Leaving directory '/build/reproducible-path/wtdbg2-2.5' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/wtdbg2-2.5' sed -i.dh_clean \ -e '1s/\/usr\/bin\/env perl/\/usr\/bin\/perl/' \ -e 's/memeory/memory/' \ -e 's/automaticly/automatically/' \ -e 's/ouput/output/' \ -e 's/vaule/value/' \ -e 's/annonymous/anonymous/' \ scripts/* *.c *.h *.md mkdir -p /build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr mkdir -p /build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 for SIMD in avx2 avx sse4.1 ssse3 sse3 sse2; do \ export CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/wtdbg2-2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -m${SIMD}" ; \ make clean ; \ dh_auto_build -- SFX=-${SIMD} ; \ done make[2]: Entering directory '/build/reproducible-path/wtdbg2-2.5' rm -f *.o *.gcda *.gcno *.gcov gmon.out kbm2 wtdbg2 wtdbg-cns wtpoa-cns pgzf make[2]: Leaving directory '/build/reproducible-path/wtdbg2-2.5' make -j42 "INSTALL=install --strip-program=true" SFX=-avx2 make[2]: Entering directory '/build/reproducible-path/wtdbg2-2.5' gcc -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/wtdbg2-2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o kbm2-avx2 kbm.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/wtdbg2-2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg2-avx2 wtdbg.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/wtdbg2-2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg-cns-avx2 wtdbg-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/wtdbg2-2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtpoa-cns-avx2 wtpoa-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/wtdbg2-2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o pgzf-avx2 pgzf.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now In file included from pgzf.h:24, from pgzf.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:33: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:33: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:33: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:33: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from list.h:28, from dna.h:27, from kswx.h:24, from wtdbg-cns.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:33: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:33: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:33: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:33: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtdbg-cns.c:23: filereader.h: In function ‘file_src_thread_func’: filereader.h:157:43: warning: this statement may fall through [-Wimplicit-fallthrough=] 157 | if(_file == NULL){ | ^ filereader.h:162:33: note: here 162 | case FILEREADER_ATTR_PROC: | ^~~~ filereader.h:163:43: warning: this statement may fall through [-Wimplicit-fallthrough=] 163 | if(_file == NULL){ | ^ filereader.h:168:33: note: here 168 | case FILEREADER_ATTR_USER: | ^~~~ filereader.h:169:43: warning: this statement may fall through [-Wimplicit-fallthrough=] 169 | if(_file == NULL){ | ^ filereader.h:174:33: note: here 174 | default: | ^~~~~~~ wtpoa-cns.c: In function ‘main’: wtpoa-cns.c:110:45: warning: this statement may fall through [-Wimplicit-fallthrough=] 110 | case 'p': print_lay = 1; | ~~~~~~~~~~^~~ wtpoa-cns.c:111:25: note: here 111 | case 'd': push_cplist(dbfs, optarg); break; | ^~~~ In file included from bit2vec.h:27, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:33: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:33: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:33: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:33: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtpoa.h:25: filereader.h: In function ‘file_src_thread_func’: filereader.h:157:43: warning: this statement may fall through [-Wimplicit-fallthrough=] 157 | if(_file == NULL){ | ^ filereader.h:162:33: note: here 162 | case FILEREADER_ATTR_PROC: | ^~~~ filereader.h:163:43: warning: this statement may fall through [-Wimplicit-fallthrough=] 163 | if(_file == NULL){ | ^ filereader.h:168:33: note: here 168 | case FILEREADER_ATTR_USER: | ^~~~ filereader.h:169:43: warning: this statement may fall through [-Wimplicit-fallthrough=] 169 | if(_file == NULL){ | ^ filereader.h:174:33: note: here 174 | default: | ^~~~~~~ In file included from list.h:28, from kbm.h:23, from kbm.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:33: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:33: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:33: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:33: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘mem_load_obj_file’: mem_share.h:1301:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1301 | fread(size, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1302:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1302 | fread(mem_type, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1303:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1303 | fread(cnt, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1304:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1304 | fread(aux_data, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘mem_load_obj’: mem_share.h:919:42: warning: this statement may fall through [-Wimplicit-fallthrough=] 919 | for(m=0;m '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/kbm2-avx2' 'wtdbg2-avx2' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg2-avx2' 'wtdbg-cns-avx2' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg-cns-avx2' 'wtpoa-cns-avx2' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtpoa-cns-avx2' 'pgzf-avx2' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/pgzf-avx2' make[2]: Leaving directory '/build/reproducible-path/wtdbg2-2.5' make -j42 "INSTALL=install --strip-program=true" SFX=-avx BIN=/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 install make[2]: Entering directory '/build/reproducible-path/wtdbg2-2.5' mkdir -p /build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 && cp -fvu kbm2-avx wtdbg2-avx wtdbg-cns-avx wtpoa-cns-avx pgzf-avx /build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 'kbm2-avx' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/kbm2-avx' 'wtdbg2-avx' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg2-avx' 'wtdbg-cns-avx' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg-cns-avx' 'wtpoa-cns-avx' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtpoa-cns-avx' 'pgzf-avx' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/pgzf-avx' make[2]: Leaving directory '/build/reproducible-path/wtdbg2-2.5' make -j42 "INSTALL=install --strip-program=true" SFX=-sse4.1 BIN=/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 install make[2]: Entering directory '/build/reproducible-path/wtdbg2-2.5' mkdir -p /build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 && cp -fvu kbm2-sse4.1 wtdbg2-sse4.1 wtdbg-cns-sse4.1 wtpoa-cns-sse4.1 pgzf-sse4.1 /build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 'kbm2-sse4.1' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/kbm2-sse4.1' 'wtdbg2-sse4.1' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg2-sse4.1' 'wtdbg-cns-sse4.1' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg-cns-sse4.1' 'wtpoa-cns-sse4.1' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtpoa-cns-sse4.1' 'pgzf-sse4.1' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/pgzf-sse4.1' make[2]: Leaving directory '/build/reproducible-path/wtdbg2-2.5' make -j42 "INSTALL=install --strip-program=true" SFX=-ssse3 BIN=/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 install make[2]: Entering directory '/build/reproducible-path/wtdbg2-2.5' mkdir -p /build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 && cp -fvu kbm2-ssse3 wtdbg2-ssse3 wtdbg-cns-ssse3 wtpoa-cns-ssse3 pgzf-ssse3 /build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 'kbm2-ssse3' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/kbm2-ssse3' 'wtdbg2-ssse3' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg2-ssse3' 'wtdbg-cns-ssse3' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg-cns-ssse3' 'wtpoa-cns-ssse3' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtpoa-cns-ssse3' 'pgzf-ssse3' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/pgzf-ssse3' make[2]: Leaving directory '/build/reproducible-path/wtdbg2-2.5' make -j42 "INSTALL=install --strip-program=true" SFX=-sse3 BIN=/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 install make[2]: Entering directory '/build/reproducible-path/wtdbg2-2.5' mkdir -p /build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 && cp -fvu kbm2-sse3 wtdbg2-sse3 wtdbg-cns-sse3 wtpoa-cns-sse3 pgzf-sse3 /build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 'kbm2-sse3' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/kbm2-sse3' 'wtdbg2-sse3' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg2-sse3' 'wtdbg-cns-sse3' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg-cns-sse3' 'wtpoa-cns-sse3' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtpoa-cns-sse3' 'pgzf-sse3' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/pgzf-sse3' make[2]: Leaving directory '/build/reproducible-path/wtdbg2-2.5' make -j42 "INSTALL=install --strip-program=true" SFX=-sse2 BIN=/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 install make[2]: Entering directory '/build/reproducible-path/wtdbg2-2.5' mkdir -p /build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 && cp -fvu kbm2-sse2 wtdbg2-sse2 wtdbg-cns-sse2 wtpoa-cns-sse2 pgzf-sse2 /build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 'kbm2-sse2' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/kbm2-sse2' 'wtdbg2-sse2' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg2-sse2' 'wtdbg-cns-sse2' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg-cns-sse2' 'wtpoa-cns-sse2' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtpoa-cns-sse2' 'pgzf-sse2' -> '/build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/pgzf-sse2' make[2]: Leaving directory '/build/reproducible-path/wtdbg2-2.5' mkdir -p /build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/bin cd /build/reproducible-path/wtdbg2-2.5/debian/wtdbg2/usr/bin \ && for prog in kbm2 wtdbg2 wtdbg-cns wtpoa-cns pgzf; do \ ln -s ../lib/wtdbg2/simd-dispatch ${prog} ; done make[1]: Leaving directory '/build/reproducible-path/wtdbg2-2.5' dh_install debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/wtdbg2-2.5' find debian/ -name '*.dh_clean' -delete make[1]: Leaving directory '/build/reproducible-path/wtdbg2-2.5' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'wtdbg2' in '../wtdbg2_2.5-10_amd64.deb'. dpkg-deb: building package 'wtdbg2-dbgsym' in '../wtdbg2-dbgsym_2.5-10_amd64.deb'. dpkg-deb: building package 'wtdbg2-examples' in '../wtdbg2-examples_2.5-10_all.deb'. dpkg-genbuildinfo --build=binary -O../wtdbg2_2.5-10_amd64.buildinfo dpkg-genchanges --build=binary -O../wtdbg2_2.5-10_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2771190 and its subdirectories I: Current time: Wed Jun 25 08:33:30 -12 2025 I: pbuilder-time-stamp: 1750883610 Thu May 23 14:10:33 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Thu May 23 14:10:33 UTC 2024 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Thu May 23 14:17:36 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Thu May 23 14:17:38 UTC 2024 I: wtdbg2_2.5-10_amd64.changes: Format: 1.8 Date: Sat, 04 May 2024 19:59:44 +0200 Source: wtdbg2 Binary: wtdbg2 wtdbg2-dbgsym wtdbg2-examples Architecture: amd64 all Version: 2.5-10 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: wtdbg2 - de novo sequence assembler for long noisy reads wtdbg2-examples - Examples for wtdbg - de novo sequence assembler Closes: 1045984 Changes: wtdbg2 (2.5-10) unstable; urgency=medium . * d/rules: repair double source builds. This involved cleaning up traces of CPU flag specific builds, in the context of SIMDe builds. This also involved preserving a number of files affected by sed commands doing a wealth of changes on a number of files. Lists of binaries and CPU flags involved in the cleanup process could be reused to simplify a bit the build procedure. (Closes: #1045984) * d/control: declare compliance to standards version 4.7.0. * d/control: add myself to uploaders. Checksums-Sha1: 55ebc73f0775b1efcfd9a49a8363ef34776f0681 8801804 wtdbg2-dbgsym_2.5-10_amd64.deb 32e706161b569dc9fb0be71833b25cc22e77f7d2 121133472 wtdbg2-examples_2.5-10_all.deb af7484e863edce818823607d2a6c2d2d1f9aa762 5502 wtdbg2_2.5-10_amd64.buildinfo 63780777957f10adf00d7da4a1f9fd482d8bfabf 713336 wtdbg2_2.5-10_amd64.deb Checksums-Sha256: 1c321eda963a3eda2bdf7eb417c901b32d25a3456407e3683e50332b2ae73e33 8801804 wtdbg2-dbgsym_2.5-10_amd64.deb 530190c44407abcf1cc15721b6b5f440ad3420dd536df6a23714a546b958fe91 121133472 wtdbg2-examples_2.5-10_all.deb 60f3b7df783510e95027e0e48fe0dc86aff751d7c19f3c8844a6e1238c9db092 5502 wtdbg2_2.5-10_amd64.buildinfo 59f200dd946d568ef92e4cef9d250b547f522f82fe54ed6f95e37a481cc4be0c 713336 wtdbg2_2.5-10_amd64.deb Files: f648755411aaa9291873389d8fa57c5d 8801804 debug optional wtdbg2-dbgsym_2.5-10_amd64.deb d8c25159b3e04c7a5859a7d29da2cf59 121133472 science optional wtdbg2-examples_2.5-10_all.deb 2f7415af7965e2960ffcd532a4176c21 5502 science optional wtdbg2_2.5-10_amd64.buildinfo 213a3dd53a34e19e5f1269364f870622 713336 science optional wtdbg2_2.5-10_amd64.deb Thu May 23 14:17:39 UTC 2024 I: diffoscope 266 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_30-9636.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.RjwuAiNo/wtdbg2_2.5-10.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.RjwuAiNo/wtdbg2_2.5-10.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.RjwuAiNo/wtdbg2_2.5-10.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.RjwuAiNo/b1/wtdbg2_2.5-10_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.RjwuAiNo/b2/wtdbg2_2.5-10_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 1.808s) 1.808s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 1.465s) 1.465s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 2.236s CPU time consumed: 2.228s Thu May 23 14:17:42 UTC 2024 I: diffoscope 266 found no differences in the changes files, and a .buildinfo file also exists. Thu May 23 14:17:42 UTC 2024 I: wtdbg2 from unstable built successfully and reproducibly on amd64. Thu May 23 14:17:44 UTC 2024 I: Submitting .buildinfo files to external archives: Thu May 23 14:17:44 UTC 2024 I: Submitting 8.0K b1/wtdbg2_2.5-10_amd64.buildinfo.asc Thu May 23 14:17:45 UTC 2024 I: Submitting 8.0K b2/wtdbg2_2.5-10_amd64.buildinfo.asc Thu May 23 14:17:47 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu May 23 14:17:47 UTC 2024 I: Done submitting .buildinfo files. Thu May 23 14:17:47 UTC 2024 I: Removing signed wtdbg2_2.5-10_amd64.buildinfo.asc files: removed './b1/wtdbg2_2.5-10_amd64.buildinfo.asc' removed './b2/wtdbg2_2.5-10_amd64.buildinfo.asc'