Fri May 31 00:53:11 UTC 2024 I: starting to build q2-phylogeny/unstable/amd64 on jenkins on '2024-05-31 00:52' Fri May 31 00:53:11 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_25/7646/console.log Fri May 31 00:53:11 UTC 2024 I: Downloading source for unstable/q2-phylogeny=2024.2.0-1 --2024-05-31 00:53:11-- http://deb.debian.org/debian/pool/main/q/q2-phylogeny/q2-phylogeny_2024.2.0-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2171 (2.1K) [text/prs.lines.tag] Saving to: ‘q2-phylogeny_2024.2.0-1.dsc’ 0K .. 100% 129M=0s 2024-05-31 00:53:11 (129 MB/s) - ‘q2-phylogeny_2024.2.0-1.dsc’ saved [2171/2171] Fri May 31 00:53:11 UTC 2024 I: q2-phylogeny_2024.2.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: q2-phylogeny Binary: q2-phylogeny Architecture: any-amd64 Version: 2024.2.0-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://qiime2.org/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/q2-phylogeny Vcs-Git: https://salsa.debian.org/med-team/q2-phylogeny.git Testsuite: autopkgtest Testsuite-Triggers: python3-all, python3-pytest-cov Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools, iqtree Package-List: q2-phylogeny deb science optional arch=any-amd64 Checksums-Sha1: b4d32e369677bd0107e9ed969fac5ee6f43f3934 264986 q2-phylogeny_2024.2.0.orig.tar.gz a1228dabeb29d12683c4d632f7871b765863d412 5860 q2-phylogeny_2024.2.0-1.debian.tar.xz Checksums-Sha256: bea13f54f11aee6a2646161e937a460da0c67cb1894d6c149de63d6b06fbb380 264986 q2-phylogeny_2024.2.0.orig.tar.gz 9bed5ce2ab2cc4189856174c56ce77114f3cbba3459f80a49a13b30869aeb927 5860 q2-phylogeny_2024.2.0-1.debian.tar.xz Files: c5afe45d91b9c9290306dbf51f72f1fd 264986 q2-phylogeny_2024.2.0.orig.tar.gz 8713d238de87add9c0597e16cdb5eee5 5860 q2-phylogeny_2024.2.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmXSE2cRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFzOw//Z2Ez3e7Ntx+MaBWAd6uZZgmHQ+S+bE0O zJA709JXDdfPLrfuaAJ9CCvnD1FsCAEFEBQ8HHAvkb5KwKetDHq4hlf6njmaASjQ 1QGEocsikvH3dYCRgwUX8OuS2Zge8vCXVCKgwtD3I3OcnqpuyUU4Hku7mueKgb9u ai+6uqB/qvqN1vUdfHGuynPfngHM7EgNW8RT4RJrYRmHc+L6yQmXIYHLd0257Cxj c/RT1LfO1HmamhWqzx1GXTXs+QgEJW/3b8KsK1LTpy6O/80SHT6m84juEapb/eEz ueiBG1+VV4e2HzqYAwOg4cTBoY5WngwELaS9ejweZ98odRyySvfZcy7QLJbOy+Cq 3VQG2wKb0lzXSD6W/bTK9Hdbm4S6KuFNSB5Ycq6uI9vfCEp32R+FX0lw4UqZLqpx zS2o4LF8/xiSAn+pWbtvCwVBrEMmzN7F3Ogk0vXdLPMY3hB2dBFU2d5VsT1j603a 3gN33PQaqk5LZx0/G5EexhTw6dfsMspaXmFUWU5Hj+6k+ITllNiDGfymo4JLdyeE fUH/UNwRdjMD7NlWlfqnwE+H2SMWkwqA20ZZizydbN/IRIbZNzSuQOINfXMd7T59 m75bCZYlJa8cBvCAs1uhYhwgn6YceXF4dhSylq9Lgmgoi8iKZ5YsebniKRUPg9Dc 0zQnO6ivnJQ= =F0bk -----END PGP SIGNATURE----- Fri May 31 00:53:11 UTC 2024 I: Checking whether the package is not for us Fri May 31 00:53:11 UTC 2024 I: Starting 1st build on remote node ionos1-amd64.debian.net. Fri May 31 00:53:11 UTC 2024 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Fri May 31 00:55:10 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu May 30 12:53:13 -12 2024 I: pbuilder-time-stamp: 1717116793 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [q2-phylogeny_2024.2.0-1.dsc] I: copying [./q2-phylogeny_2024.2.0.orig.tar.gz] I: copying [./q2-phylogeny_2024.2.0-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Feb 18 14:25:43 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./q2-phylogeny_2024.2.0-1.dsc: no acceptable signature found dpkg-source: info: extracting q2-phylogeny in q2-phylogeny-2024.2.0 dpkg-source: info: unpacking q2-phylogeny_2024.2.0.orig.tar.gz dpkg-source: info: unpacking q2-phylogeny_2024.2.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying iqtree2.patch dpkg-source: info: applying fix-tests-and-binary-names-and-options.patch dpkg-source: info: applying skip-test-needing-internet.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3049399/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='b2dbf3cdb732440da6a82c41ada42fd8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3049399' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ECBt4CKi/pbuilderrc_NH1m --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ECBt4CKi/b1 --logfile b1/build.log q2-phylogeny_2024.2.0-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 27 07:42 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3049399/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools, iqtree dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19716 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on iqtree; however: Package iqtree is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} ibverbs-providers{a} intltool-debian{a} iqtree{a} libamd-comgr2{a} libamdhip64-5{a} libarchive-zip-perl{a} libbsd0{a} libdebhelper-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm2{a} libedit2{a} libelf1t64{a} libevent-core-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libfabric1{a} libfile-stripnondeterminism-perl{a} libhsa-runtime64-1{a} libhsakmt1{a} libhwloc-plugins{a} libhwloc15{a} libibverbs1{a} libicu72{a} libllvm17t64{a} libmagic-mgc{a} libmagic1t64{a} libmunge2{a} libnl-3-200{a} libnl-route-3-200{a} libnuma1{a} libopenmpi3t64{a} libpciaccess0{a} libpipeline1{a} libpmix2t64{a} libpsm-infinipath1{a} libpsm2-2{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} librdmacm1t64{a} libreadline8t64{a} libtool{a} libuchardet0{a} libucx0{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxnvctrl0{a} libz3-4{a} m4{a} man-db{a} media-types{a} netbase{a} ocl-icd-libopencl1{a} po-debconf{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 85 newly installed, 0 to remove and 0 not upgraded. Need to get 91.0 MB of archives. After unpacking 395 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.1-4 [95.7 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 35 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-2 [670 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 python3-lib2to3 all 3.12.3-3.1 [77.7 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 python3-distutils all 3.12.3-3.1 [131 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20240422 [107 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libnl-3-200 amd64 3.7.0-0.3 [59.0 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libnl-route-3-200 amd64 3.7.0-0.3 [181 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libibverbs1 amd64 50.0-2+b1 [61.7 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 ibverbs-providers amd64 50.0-2+b1 [342 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10 [131 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [53.9 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [170 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libnuma1 amd64 2.0.18-1 [21.9 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libpsm2-2 amd64 11.2.185-2 [180 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 librdmacm1t64 amd64 50.0-2+b1 [70.2 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libfabric1 amd64 1.17.0-3+b1 [628 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libhwloc15 amd64 2.10.0-1+b1 [161 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libmunge2 amd64 0.5.15-4 [19.8 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libpciaccess0 amd64 0.17-3+b1 [51.9 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2 [144 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libxnvctrl0 amd64 535.171.04-1 [13.8 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b1 [40.3 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libhwloc-plugins amd64 2.10.0-1+b1 [18.0 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libpmix2t64 amd64 5.0.2-3 [652 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20240517-1 [93.3 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libllvm17t64 amd64 1:17.0.6-12 [23.7 MB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b1 [13.0 MB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libdrm-common all 2.4.120-2 [7688 B] Get: 78 http://deb.debian.org/debian unstable/main amd64 libdrm2 amd64 2.4.120-2 [38.1 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.120-2 [21.4 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libhsakmt1 amd64 5.7.0-1 [60.7 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libhsa-runtime64-1 amd64 5.7.1-2 [504 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libamdhip64-5 amd64 5.7.1-3 [8760 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libucx0 amd64 1.16.0+ds-5 [1109 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libopenmpi3t64 amd64 4.1.6-13.3 [2426 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 iqtree amd64 2.0.7+dfsg-1+b1 [3671 kB] Fetched 91.0 MB in 2s (37.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. 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Setting up libamdhip64-5 (5.7.1-3) ... Setting up dh-python (6.20240422) ... Setting up libucx0:amd64 (1.16.0+ds-5) ... Setting up libopenmpi3t64:amd64 (4.1.6-13.3) ... Setting up iqtree (2.0.7+dfsg-1+b1) ... Processing triggers for libc-bin (2.38-11) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/q2-phylogeny-2024.2.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../q2-phylogeny_2024.2.0-1_source.changes dpkg-buildpackage: info: source package q2-phylogeny dpkg-buildpackage: info: source version 2024.2.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.11 setup.py clean running clean removing '/build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny copying q2_phylogeny/_align_to_tree_mafft_fasttree.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny copying q2_phylogeny/_util.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny copying q2_phylogeny/_align_to_tree_mafft_raxml.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny copying q2_phylogeny/_iqtree.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny copying q2_phylogeny/_examples.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny copying q2_phylogeny/__init__.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny copying q2_phylogeny/_filter.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny copying q2_phylogeny/_raxml.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny copying q2_phylogeny/_align_to_tree_mafft_iqtree.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny copying q2_phylogeny/_fasttree.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny copying q2_phylogeny/_version.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny copying q2_phylogeny/plugin_setup.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny creating /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests copying q2_phylogeny/tests/test_examples.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests copying q2_phylogeny/tests/test_raxml.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests copying q2_phylogeny/tests/test_util.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests copying q2_phylogeny/tests/__init__.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests copying q2_phylogeny/tests/test_align_to_tree_mafft_raxml.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests copying q2_phylogeny/tests/test_align_to_tree_mafft_fasttree.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests copying q2_phylogeny/tests/test_iqtree.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests copying q2_phylogeny/tests/test_align_to_tree_mafft_iqtree.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests copying q2_phylogeny/tests/test_filter.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests copying q2_phylogeny/tests/test_fasttree.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests copying q2_phylogeny/citations.bib -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny creating /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/data copying q2_phylogeny/tests/data/test3.tre -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/data copying q2_phylogeny/tests/data/test4.tre -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/data copying q2_phylogeny/tests/data/aligned-dna-sequences-1.fasta -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/data copying q2_phylogeny/tests/data/aligned-dna-sequences-4.fasta -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/data copying q2_phylogeny/tests/data/test2.tre -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/data copying q2_phylogeny/tests/data/test.tre -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/data copying q2_phylogeny/tests/data/test5.tre -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/data copying q2_phylogeny/tests/data/aligned-dna-sequences-2.fasta -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/data copying q2_phylogeny/tests/data/aligned-dna-sequences-3.fasta -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/data copying q2_phylogeny/tests/data/dna-sequences-1.fasta -> /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/data UPDATING /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/_version.py set /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/_version.py to '2024.2.0' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/q2-phylogeny-2024.2.0' echo "I: Delaying true testing to autopkgtests since QIIME2 module cannot be registered at build time" I: Delaying true testing to autopkgtests since QIIME2 module cannot be registered at build time make[1]: Leaving directory '/build/reproducible-path/q2-phylogeny-2024.2.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/q2-phylogeny/ -O--buildsystem=pybuild I: pybuild pybuild:308: rm -rvf /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2-phylogeny.egg-* /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/site.py /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/.coverage* /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/easy-install.pth I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py UPDATING /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/_version.py set /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/_version.py to '2024.2.0' running install_lib creating /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr creating /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib creating /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11 creating /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages creating /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/_align_to_tree_mafft_fasttree.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/_util.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/_align_to_tree_mafft_raxml.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/citations.bib -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/_iqtree.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/_examples.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/__init__.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny creating /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/test_examples.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/test_raxml.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/test_util.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/__init__.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/test_align_to_tree_mafft_raxml.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/test_align_to_tree_mafft_fasttree.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/test_iqtree.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests creating /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests/data copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/data/test3.tre -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests/data copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/data/test4.tre -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests/data copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/data/aligned-dna-sequences-1.fasta -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests/data copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/data/aligned-dna-sequences-4.fasta -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests/data copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/data/test2.tre -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests/data copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/data/test.tre -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests/data copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/data/test5.tre -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests/data copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/data/aligned-dna-sequences-2.fasta -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests/data copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/data/aligned-dna-sequences-3.fasta -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests/data copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/data/dna-sequences-1.fasta -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests/data copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/test_align_to_tree_mafft_iqtree.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/test_filter.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/tests/test_fasttree.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/_filter.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/_raxml.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/_align_to_tree_mafft_iqtree.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/_fasttree.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/_version.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny copying /build/reproducible-path/q2-phylogeny-2024.2.0/.pybuild/cpython3_3.11/build/q2_phylogeny/plugin_setup.py -> /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny byte-compiling /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/_align_to_tree_mafft_fasttree.py to _align_to_tree_mafft_fasttree.cpython-311.pyc byte-compiling /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/_util.py to _util.cpython-311.pyc byte-compiling /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/_align_to_tree_mafft_raxml.py to _align_to_tree_mafft_raxml.cpython-311.pyc byte-compiling /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/_iqtree.py to _iqtree.cpython-311.pyc byte-compiling /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/_examples.py to _examples.cpython-311.pyc byte-compiling /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests/test_examples.py to test_examples.cpython-311.pyc byte-compiling /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests/test_raxml.py to test_raxml.cpython-311.pyc byte-compiling /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests/test_util.py to test_util.cpython-311.pyc byte-compiling /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests/test_align_to_tree_mafft_raxml.py to test_align_to_tree_mafft_raxml.cpython-311.pyc byte-compiling /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests/test_align_to_tree_mafft_fasttree.py to test_align_to_tree_mafft_fasttree.cpython-311.pyc byte-compiling /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests/test_iqtree.py to test_iqtree.cpython-311.pyc byte-compiling /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests/test_align_to_tree_mafft_iqtree.py to test_align_to_tree_mafft_iqtree.cpython-311.pyc byte-compiling /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests/test_filter.py to test_filter.cpython-311.pyc byte-compiling /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/tests/test_fasttree.py to test_fasttree.cpython-311.pyc byte-compiling /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/_filter.py to _filter.cpython-311.pyc byte-compiling /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/_raxml.py to _raxml.cpython-311.pyc byte-compiling /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/_align_to_tree_mafft_iqtree.py to _align_to_tree_mafft_iqtree.cpython-311.pyc byte-compiling /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/_fasttree.py to _fasttree.cpython-311.pyc byte-compiling /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/_version.py to _version.cpython-311.pyc byte-compiling /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny/plugin_setup.py to plugin_setup.cpython-311.pyc running install_egg_info running egg_info creating q2_phylogeny.egg-info writing q2_phylogeny.egg-info/PKG-INFO writing dependency_links to q2_phylogeny.egg-info/dependency_links.txt writing entry points to q2_phylogeny.egg-info/entry_points.txt writing top-level names to q2_phylogeny.egg-info/top_level.txt writing manifest file 'q2_phylogeny.egg-info/SOURCES.txt' reading manifest file 'q2_phylogeny.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'q2_phylogeny.egg-info/SOURCES.txt' Copying q2_phylogeny.egg-info to /build/reproducible-path/q2-phylogeny-2024.2.0/debian/q2-phylogeny/usr/lib/python3.11/dist-packages/q2_phylogeny-2024.2.0.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package q2-phylogeny: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'q2-phylogeny' in '../q2-phylogeny_2024.2.0-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../q2-phylogeny_2024.2.0-1_amd64.buildinfo dpkg-genchanges --build=binary -O../q2-phylogeny_2024.2.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3049399 and its subdirectories I: Current time: Thu May 30 12:55:10 -12 2024 I: pbuilder-time-stamp: 1717116910 Fri May 31 00:55:11 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Fri May 31 00:55:11 UTC 2024 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Fri May 31 00:56:24 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Fri May 31 00:56:24 UTC 2024 I: q2-phylogeny_2024.2.0-1_amd64.changes: Format: 1.8 Date: Sun, 18 Feb 2024 15:21:19 +0100 Source: q2-phylogeny Binary: q2-phylogeny Architecture: amd64 Version: 2024.2.0-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: q2-phylogeny - QIIME 2 plugin for phylogeny Changes: q2-phylogeny (2024.2.0-1) unstable; urgency=medium . * New upstream version * Autopkgtest for all supported Python3 versions * Regenerate debian/control from debian/control.in (routine-update) Checksums-Sha1: 2efed77004b44cbcb6e4fbc5d7b1c29333f7f20e 6613 q2-phylogeny_2024.2.0-1_amd64.buildinfo 1e9da0c43aa980a5941bb83af85d760203289b63 26636 q2-phylogeny_2024.2.0-1_amd64.deb Checksums-Sha256: 395029ed8b971fe7920ac9295a5496634b9a70e4826d9b049377b0df2106bf4b 6613 q2-phylogeny_2024.2.0-1_amd64.buildinfo a60e8ab282f87c8edb24f6fc6da9453a61cae279b90265c9207beb5c3d0e2505 26636 q2-phylogeny_2024.2.0-1_amd64.deb Files: 0f462ce6142572b3df7b9ce88e135afd 6613 science optional q2-phylogeny_2024.2.0-1_amd64.buildinfo 65ab74234084a9a81af9e684e004a1ad 26636 science optional q2-phylogeny_2024.2.0-1_amd64.deb Fri May 31 00:56:25 UTC 2024 I: diffoscope 268 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_25-7646.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ECBt4CKi/q2-phylogeny_2024.2.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ECBt4CKi/q2-phylogeny_2024.2.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ECBt4CKi/q2-phylogeny_2024.2.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ECBt4CKi/b1/q2-phylogeny_2024.2.0-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ECBt4CKi/b2/q2-phylogeny_2024.2.0-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.408s) 0.408s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.017s) 0.017s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 786ms CPU time consumed: 783ms Fri May 31 00:56:27 UTC 2024 I: diffoscope 268 found no differences in the changes files, and a .buildinfo file also exists. Fri May 31 00:56:27 UTC 2024 I: q2-phylogeny from unstable built successfully and reproducibly on amd64. Fri May 31 00:56:28 UTC 2024 I: Submitting .buildinfo files to external archives: Fri May 31 00:56:28 UTC 2024 I: Submitting 8.0K b1/q2-phylogeny_2024.2.0-1_amd64.buildinfo.asc Fri May 31 00:56:30 UTC 2024 I: Submitting 8.0K b2/q2-phylogeny_2024.2.0-1_amd64.buildinfo.asc Fri May 31 00:56:31 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri May 31 00:56:31 UTC 2024 I: Done submitting .buildinfo files. Fri May 31 00:56:31 UTC 2024 I: Removing signed q2-phylogeny_2024.2.0-1_amd64.buildinfo.asc files: removed './b1/q2-phylogeny_2024.2.0-1_amd64.buildinfo.asc' removed './b2/q2-phylogeny_2024.2.0-1_amd64.buildinfo.asc'