Thu Jun 13 02:07:44 UTC 2024 I: starting to build conservation-code/unstable/amd64 on jenkins on '2024-06-13 02:07' Thu Jun 13 02:07:44 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_3/22580/console.log Thu Jun 13 02:07:44 UTC 2024 I: Downloading source for unstable/conservation-code=20110309.0-8 --2024-06-13 02:07:45-- http://deb.debian.org/debian/pool/main/c/conservation-code/conservation-code_20110309.0-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2160 (2.1K) [text/prs.lines.tag] Saving to: ‘conservation-code_20110309.0-8.dsc’ 0K .. 100% 281M=0s 2024-06-13 02:07:45 (281 MB/s) - ‘conservation-code_20110309.0-8.dsc’ saved [2160/2160] Thu Jun 13 02:07:45 UTC 2024 I: conservation-code_20110309.0-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: conservation-code Binary: conservation-code Architecture: all Version: 20110309.0-8 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille Homepage: https://compbio.cs.princeton.edu/conservation/ Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/conservation-code Vcs-Git: https://salsa.debian.org/med-team/conservation-code.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12), dh-python, python3 Package-List: conservation-code deb science optional arch=all Checksums-Sha1: 5252fa94c2390557c01932301ae0bb59c0c16fd6 19560 conservation-code_20110309.0.orig.tar.xz 68980e389d3f9f011f32ff6db987a9a64a8e4206 14140 conservation-code_20110309.0-8.debian.tar.xz Checksums-Sha256: caef16e54abe983d591721aef34fa5f0fc051d1f2fce9ac5637a3681be37a993 19560 conservation-code_20110309.0.orig.tar.xz 0576bde4fc2db5f9392acbde9f025d8e225a3bda170a006d8c1d2818f438cf2c 14140 conservation-code_20110309.0-8.debian.tar.xz Files: 9a202bfba21616c53bb0ea52f7b8b791 19560 conservation-code_20110309.0.orig.tar.xz a7f04eb1844224976e0fa8ddaa66f32d 14140 conservation-code_20110309.0-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl32USIRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFIgw//euyCIIcwFacmj3DgTci19aS5roiAAX9D A0O49TOrzMBhdgrN8uxc7yroYTnS5EkqriI1w8RP5g906lXsis8509dzPc1OfeX+ 0ppiTvs4wkX6vRQRpKuiKxphHrYIt9Mxv/gQAA2Ii2yMTqwhBMKEHlmXmkAmRRD5 MI6crOd/1g9vaVWbvQbKRYMfAWcUCpHhLJ0wDElqTpvi9wB8zVvykw7XwSENtdYh RwOHRcscV6hlkdOERDdg+Yyr+UIMMRMRSfxwO6NAxvPWgfiw+RP+weEtv3Rb8doh Fr9c6lAXww+WxZuSOUy0+ct+WkFJTtu+dt3F2t8pjCAsgL67ndkRDh0uVpuEjbFi A49sUZHnsIn3Iuwz8hSHj55XLvtN2HidozMudF20biNLewFZMGHnOTCQiSRzlMit 37snA7gqCPuBZGzvneggW9NFEVzATmnuKHGhTJNX9JrgK0a5tGsJgQ1ikrHbzzWV 77CQaCTYeXBedHYu47WoiPlRcp4UmBLYD3jEabCraJe+V+njio9Hq9I3DKwJ352w cKE0Mt/Y3Dpev3nnQ6S/NyK/fmIU7CGQVzQPK1VIPaa7PcjTHCTDH2/y9rJlEAMm +JzuONvpD5pZ9ovTkGhMvDbBVKAmt03ksBRGrGKxM9CHJakFnmKRg4LlTJbBCuUl mTEhomUp7c0= =zjD+ -----END PGP SIGNATURE----- Thu Jun 13 02:07:45 UTC 2024 I: Checking whether the package is not for us Thu Jun 13 02:07:45 UTC 2024 I: Starting 1st build on remote node ionos1-amd64.debian.net. Thu Jun 13 02:07:45 UTC 2024 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Thu Jun 13 02:12:54 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jun 12 14:07:47 -12 2024 I: pbuilder-time-stamp: 1718244467 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [conservation-code_20110309.0-8.dsc] I: copying [./conservation-code_20110309.0.orig.tar.xz] I: copying [./conservation-code_20110309.0-8.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Dec 15 15:28:34 2019 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./conservation-code_20110309.0-8.dsc: no acceptable signature found dpkg-source: info: extracting conservation-code in conservation-code-20110309.0 dpkg-source: info: unpacking conservation-code_20110309.0.orig.tar.xz dpkg-source: info: unpacking conservation-code_20110309.0-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying examples dpkg-source: info: applying script_name dpkg-source: info: applying numpy.numarray dpkg-source: info: applying default_matrix_path dpkg-source: info: applying optimize_loop dpkg-source: info: applying stockholm_format dpkg-source: info: applying Python3-prints dpkg-source: info: applying usage dpkg-source: info: applying fix_load_identity_matrix dpkg-source: info: applying 2to3.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1616383/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='7c6e4bde14e5473b974722e711dfbefd' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1616383' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5R6iLomw/pbuilderrc_HXYJ --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5R6iLomw/b1 --logfile b1/build.log conservation-code_20110309.0-8.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 5 22:35 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1616383/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dh-python, python3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19713 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 47 newly installed, 0 to remove and 0 not upgraded. Need to get 25.8 MB of archives. After unpacking 102 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.1-8.1 [96.2 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-2 [1411 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 35 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3 [670 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 python3-lib2to3 all 3.12.3-3.1 [77.7 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 python3-distutils all 3.12.3-3.1 [131 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20240422 [107 kB] Fetched 25.8 MB in 5s (5217 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19713 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20029 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21021 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.8-1_amd64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. 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Current default time zone: 'Etc/UTC' Local time is now: Thu Jun 13 02:10:28 UTC 2024. Universal Time is now: Thu Jun 13 02:10:28 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up netbase (6.4) ... Setting up readline-common (8.2-4) ... Setting up libxml2:amd64 (2.12.7+dfsg-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up python3-lib2to3 (3.12.3-3.1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-3.1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up dh-python (6.20240422) ... Processing triggers for libc-bin (2.38-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.35-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/conservation-code-20110309.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../conservation-code_20110309.0-8_source.changes dpkg-buildpackage: info: source package conservation-code dpkg-buildpackage: info: source version 20110309.0-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/conservation-code-20110309.0' rm -f debian/score_conservation.1 ChangeLog make[1]: Leaving directory '/build/reproducible-path/conservation-code-20110309.0' dh_clean debian/rules build dh build --with python3 dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/conservation-code-20110309.0' sed -e 's|__docdir__|/usr/share/doc/conservation-code|g;s|__pkgdatadir__|/usr/share/conservation-code|g;s|__VERSION__|20110309.0|g;' "debian/score_conservation.1.pod" | \ pod2man -c 'User Commands' -r "20110309.0" -name DEBIAN/SCORE_CONSERVATION > "debian/score_conservation.1" dh override_dh_auto_build --with python3 make[1]: Leaving directory '/build/reproducible-path/conservation-code-20110309.0' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3 dh_testroot dh_prep dh_auto_install --destdir=debian/conservation-code/ debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/conservation-code-20110309.0' dh_install -X._ make[1]: Leaving directory '/build/reproducible-path/conservation-code-20110309.0' dh_installdocs debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/conservation-code-20110309.0' # Courtesy of Jakub Wilk: sed -n -e '/# [0-9/]\{8\}/ { s/# // p }' < score_conservation.py > ChangeLog dh_installchangelogs make[1]: Leaving directory '/build/reproducible-path/conservation-code-20110309.0' dh_installexamples dh_installman dh_python3 dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'conservation-code' in '../conservation-code_20110309.0-8_all.deb'. dpkg-genbuildinfo --build=binary -O../conservation-code_20110309.0-8_amd64.buildinfo dpkg-genchanges --build=binary -O../conservation-code_20110309.0-8_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1616383 and its subdirectories I: Current time: Wed Jun 12 14:12:53 -12 2024 I: pbuilder-time-stamp: 1718244773 Thu Jun 13 02:12:55 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Thu Jun 13 02:12:55 UTC 2024 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Thu Jun 13 02:13:36 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Thu Jun 13 02:13:37 UTC 2024 I: conservation-code_20110309.0-8_amd64.changes: Format: 1.8 Date: Sun, 15 Dec 2019 16:24:28 +0100 Source: conservation-code Binary: conservation-code Architecture: all Version: 20110309.0-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: conservation-code - protein sequence conservation scoring tool Closes: 942925 Changes: conservation-code (20110309.0-8) unstable; urgency=medium . * Rename test dir in autopktest from ADTTMP to AUTOPKGTEST_TMP * Use 2to3 to port from Python2 to Python3 Closes: #942925 * debhelper-compat 12 * Standards-Version: 4.4.1 * Remove trailing whitespace in debian/changelog * Do not parse d/changelog * Trim trailing whitespace. * Use secure URI in Homepage field. * Remove obsolete fields Contact, Name from debian/upstream/metadata. * Remove unnecessary get-orig-source-target. Checksums-Sha1: 45c0b22cc5330d6dc3f54272635c282da74c8d46 22792 conservation-code_20110309.0-8_all.deb d9c5abbdae853896d88d909b4fdf6dff392f9a1e 5331 conservation-code_20110309.0-8_amd64.buildinfo Checksums-Sha256: dc216f62941fc40cff0f6a6d8111e53225a023c73515bbd3b1224ee95488da8a 22792 conservation-code_20110309.0-8_all.deb b29d8c97ffbc10a2e6180f0b488181e184ab52e199c70a9a1f93c07b53609857 5331 conservation-code_20110309.0-8_amd64.buildinfo Files: 653c87753d11a51537ee49640633c8f5 22792 science optional conservation-code_20110309.0-8_all.deb 0dc332ee9a4b079cca8b4eeba09ed5b5 5331 science optional conservation-code_20110309.0-8_amd64.buildinfo Thu Jun 13 02:13:38 UTC 2024 I: diffoscope 271 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_3-22580.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.5R6iLomw/conservation-code_20110309.0-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.5R6iLomw/conservation-code_20110309.0-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.5R6iLomw/conservation-code_20110309.0-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.5R6iLomw/b1/conservation-code_20110309.0-8_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.5R6iLomw/b2/conservation-code_20110309.0-8_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.356s) 0.356s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.016s) 0.016s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 684ms CPU time consumed: 685ms Thu Jun 13 02:13:39 UTC 2024 I: diffoscope 271 found no differences in the changes files, and a .buildinfo file also exists. Thu Jun 13 02:13:39 UTC 2024 I: conservation-code from unstable built successfully and reproducibly on amd64. Thu Jun 13 02:13:40 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Jun 13 02:13:40 UTC 2024 I: Submitting 8.0K b1/conservation-code_20110309.0-8_amd64.buildinfo.asc Thu Jun 13 02:13:41 UTC 2024 I: Submitting 8.0K b2/conservation-code_20110309.0-8_amd64.buildinfo.asc Thu Jun 13 02:13:42 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jun 13 02:13:42 UTC 2024 I: Done submitting .buildinfo files. Thu Jun 13 02:13:42 UTC 2024 I: Removing signed conservation-code_20110309.0-8_amd64.buildinfo.asc files: removed './b1/conservation-code_20110309.0-8_amd64.buildinfo.asc' removed './b2/conservation-code_20110309.0-8_amd64.buildinfo.asc'