Sat Jun 1 18:42:52 UTC 2024 I: starting to build biosquid/unstable/amd64 on jenkins on '2024-06-01 18:42' Sat Jun 1 18:42:52 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_6/9548/console.log Sat Jun 1 18:42:52 UTC 2024 I: Downloading source for unstable/biosquid=1.9g+cvs20050121-15.1 --2024-06-01 18:42:52-- http://deb.debian.org/debian/pool/main/b/biosquid/biosquid_1.9g%2bcvs20050121-15.1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2242 (2.2K) [text/prs.lines.tag] Saving to: ‘biosquid_1.9g+cvs20050121-15.1.dsc’ 0K .. 100% 267M=0s 2024-06-01 18:42:52 (267 MB/s) - ‘biosquid_1.9g+cvs20050121-15.1.dsc’ saved [2242/2242] Sat Jun 1 18:42:52 UTC 2024 I: biosquid_1.9g+cvs20050121-15.1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: biosquid Binary: biosquid, libsquid1t64, libsquid-dev Architecture: any Version: 1.9g+cvs20050121-15.1 Maintainer: Debian-Med Packaging Team Uploaders: Andreas Tille Homepage: http://eddylab.org/software.html Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/biosquid Vcs-Git: https://salsa.debian.org/med-team/biosquid.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), d-shlibs (>= 0.106) Package-List: biosquid deb science optional arch=any libsquid-dev deb libdevel optional arch=any libsquid1t64 deb libs optional arch=any Checksums-Sha1: 5ff847263f38a26e8cf4e2fba0414c5fdb8c6732 304060 biosquid_1.9g+cvs20050121.orig.tar.gz 2dd4764998668cfbb45cf3227d58f060ab223b1a 14804 biosquid_1.9g+cvs20050121-15.1.debian.tar.xz Checksums-Sha256: b6b752bcea5ec6468b52096cdde0e792b7f5ed5fb3f477ec7ac233c54646f925 304060 biosquid_1.9g+cvs20050121.orig.tar.gz defda3f89eaba1d601f4ce38021e451af12e8e594ffb5019a8d81177091d78ef 14804 biosquid_1.9g+cvs20050121-15.1.debian.tar.xz Files: 75ca6e693bedb18086b9e5911f3c047a 304060 biosquid_1.9g+cvs20050121.orig.tar.gz bc18268d36cc8d35b9a73e8eec0b9343 14804 biosquid_1.9g+cvs20050121-15.1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEErEg/aN5yj0PyIC/KVo0w8yGyEz0FAmXfe8ASHHZvcmxvbkBk ZWJpYW4ub3JnAAoJEFaNMPMhshM9wTAQAL7awE2qHYNWvV5BE9cTq2QJy1TU/HOC C+3kmBu8USPsUPzOoFECFLYwlYsXUD1THDEz0oYdxt2x+txYCp9TLG4f70FAoduj 0MhseST+8AwJuG9L+2vdWjJxGlyyylPL8cIAW5itkoNkbErRGdwQvjzkxgJbyReT i6TbXdrpdCiVzEopt+xt7fKaFlOo/QTWlB0jPxXqURX0hkDZXMFrw+TwEyQtlCsF 1a8vW5fS2ClTwbtemfV0bw7Aw0VqZKQia2PDTxNDByiJvt7EB92yziqv6JMH8HJl mTL5X9i+LAdZ77WXav3pC+PYEerK3YnsWxZkJt23pwVuON8IDaLWp9EqGj49Ew6E VMnhThHlXGAHTMv/B1qe+1VZ4oXO9KQw1EXOd1fMtVymcdSc7JSKbJPdfp72bWgz R6ZMF0crHBS6ptHBV/2AfFmskUlaVXlSwhjDBZJXCnUVPKR1TBrjZQ/Myrdj+pyq Byn7+haHS0eqgJR5NIMSzu4fE9BqNob2qryRty4tiOTMSGmnjtqdZOfmU3mxGGYt kCbZQ94mwfJ3bwH0X79Vt3/yBV53+tdl434knXmdYIFwzuMwFI7PBXF7hx35vAM1 xNFWuYI/GIoKonHSYjEwS+ojvSivrbENFH8XMLB3Nhu3NsnyNEUnHkinPmSz4q/S +yVMkxpXRN9f =JOLw -----END PGP SIGNATURE----- Sat Jun 1 18:42:52 UTC 2024 I: Checking whether the package is not for us Sat Jun 1 18:42:52 UTC 2024 I: Starting 1st build on remote node ionos5-amd64.debian.net. Sat Jun 1 18:42:53 UTC 2024 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Sat Jun 1 18:43:54 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Jul 4 13:05:54 -12 2025 I: pbuilder-time-stamp: 1751677554 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [biosquid_1.9g+cvs20050121-15.1.dsc] I: copying [./biosquid_1.9g+cvs20050121.orig.tar.gz] I: copying [./biosquid_1.9g+cvs20050121-15.1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Feb 28 18:30:24 2024 gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D gpgv: issuer "vorlon@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./biosquid_1.9g+cvs20050121-15.1.dsc: no acceptable signature found dpkg-source: info: extracting biosquid in biosquid-1.9g+cvs20050121 dpkg-source: info: unpacking biosquid_1.9g+cvs20050121.orig.tar.gz dpkg-source: info: unpacking biosquid_1.9g+cvs20050121-15.1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying afetch.man.patch dpkg-source: info: applying alistat.man.patch dpkg-source: info: applying compstruct.man.patch dpkg-source: info: applying Makefile.in.patch dpkg-source: info: applying seqstat.man.patch dpkg-source: info: applying sfetch.man.patch dpkg-source: info: applying shuffle.man.patch dpkg-source: info: applying sindex.man.patch dpkg-source: info: applying sreformat.man.patch dpkg-source: info: applying getopt-segmentation-fault.patch dpkg-source: info: applying reproducible.patch dpkg-source: info: applying perl-testsuite-inc.patch dpkg-source: info: applying automake.patch dpkg-source: info: applying pkg-config.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1012995/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='390a2765a29e4612a927a81012dac9b7' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1012995' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vBC284Rz/pbuilderrc_myTq --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vBC284Rz/b1 --logfile b1/build.log biosquid_1.9g+cvs20050121-15.1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.7.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.7.12-1~bpo12+1 (2024-05-06) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jul 4 14:06 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1012995/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), d-shlibs (>= 0.106) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19719 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs (>= 0.106); however: Package d-shlibs is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 19.0 MB of archives. After unpacking 73.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.1-4 [95.7 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 d-shlibs all 0.106 [10.9 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-2 [670 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Fetched 19.0 MB in 3s (7492 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19719 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-4_amd64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.1-4_amd64.deb ... Unpacking bsdextrautils (2.40.1-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.1-1_amd64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../15-d-shlibs_0.106_all.deb ... Unpacking d-shlibs (0.106) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../22-libelf1t64_0.191-1+b1_amd64.deb ... Unpacking libelf1t64:amd64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../24-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../25-libxml2_2.12.7+dfsg-2_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg-2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-14+b1_amd64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up bsdextrautils (2.40.1-4) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up d-shlibs (0.106) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libxml2:amd64 (2.12.7+dfsg-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.38-11) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/biosquid-1.9g+cvs20050121/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../biosquid_1.9g+cvs20050121-15.1_source.changes dpkg-buildpackage: info: source package biosquid dpkg-buildpackage: info: source version 1.9g+cvs20050121-15.1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steve Langasek dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/biosquid.substvars debian/libsquid1t64.substvars debian/libsquid-dev.substvars debian/files rm -fr -- debian/biosquid/ debian/tmp/ debian/libsquid1t64/ debian/libsquid-dev/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config cp -an --reflink=auto config.sub debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153.tmp cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead mv debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153.tmp debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153 cp -f /usr/share/misc/config.sub ./config.sub dh_autoreconf find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i configure.ac:145: warning: underquoted definition of SQ_ARITHMETIC_FPOS_T configure.ac:145: run info Automake 'Extending aclocal' configure.ac:145: or see https://www.gnu.org/software/automake/manual/automake.html#Extending-aclocal libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. libtoolize: 'AC_PROG_RANLIB' is rendered obsolete by 'LT_INIT' configure.ac:145: warning: underquoted definition of SQ_ARITHMETIC_FPOS_T configure.ac:145: run info Automake 'Extending aclocal' configure.ac:145: or see https://www.gnu.org/software/automake/manual/automake.html#Extending-aclocal configure.ac:47: warning: The macro `AC_CONFIG_HEADER' is obsolete. configure.ac:47: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:47: the top level configure.ac:77: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:77: You should run autoupdate. aclocal.m4:122: AC_PROG_LIBTOOL is expanded from... configure.ac:77: the top level configure.ac:154: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:154: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:145: SQ_ARITHMETIC_FPOS_T is expanded from... configure.ac:154: the top level configure.ac:169: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:169: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/functions.m4:66: AC_CHECK_FUNC is expanded from... configure.ac:169: the top level configure.ac:75: installing './compile' configure.ac:77: installing './config.guess' configure.ac:40: installing './missing' Makefile.am: installing './depcomp' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' # autoreconf && true autoconf configure.ac:47: warning: The macro `AC_CONFIG_HEADER' is obsolete. configure.ac:47: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:47: the top level configure.ac:77: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:77: You should run autoupdate. aclocal.m4:122: AC_PROG_LIBTOOL is expanded from... configure.ac:77: the top level configure.ac:154: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:154: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:145: SQ_ARITHMETIC_FPOS_T is expanded from... configure.ac:154: the top level configure.ac:169: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:169: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/functions.m4:66: AC_CHECK_FUNC is expanded from... configure.ac:169: the top level dh_auto_configure -- --enable-lfs # --enable-pvm ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-lfs checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '1111' is supported by ustar format... yes checking whether GID '1111' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar configure: configuring the SQUID library for your system. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for ranlib... ranlib checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... (cached) ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ar... /usr/bin/ar checking whether byte ordering is bigendian... no checking for ntohs... yes checking for ntohl... yes checking for htons... yes checking for htonl... yes checking size of unsigned short... 2 checking size of unsigned int... 4 checking size of unsigned long... 8 checking size of unsigned long long... 8 checking for strtoul... yes checking for strtoull... yes checking whether fpos_t is an arithmetic datatype... no. checking for strtoull... (cached) yes checking for ftello... yes checking for fseeko... yes checking for ftello64... yes checking for fseeko64... yes checking for ftell64... no checking for fseek64... no checking for stat64... yes checking for struct stat64... no! checking size of off_t... 8 checking size of off64_t... 0 checking size of fpos_t... 16 configure: configured for optional LFS, large file support checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating Testsuite/Makefile config.status: creating squid.h config.status: creating libsquid.pc config.status: creating squidconf.h config.status: executing depfiles commands config.status: executing libtool commands # avoid duplicated definition of PACKAGE_NAME (basically conflicting with hmmer2 when used together) sed -i -e '/^#define PACKAGE_NAME /i #ifndef PACKAGE_NAME' \ -e '/^#define PACKAGE_NAME /a #endif' \ -e '/^#define PACKAGE_VERSION /i #ifndef PACKAGE_VERSION' \ -e '/^#define PACKAGE_VERSION /a #endif' \ -e '/^#define _LARGEFILE_SOURCE /i #ifndef _LARGEFILE_SOURCE' \ -e '/^#define _LARGEFILE_SOURCE /a #endif' \ -e '/^#define _LARGEFILE64_SOURCE /i #ifndef _LARGEFILE64_SOURCE' \ -e '/^#define _LARGEFILE64_SOURCE /a #endif' \ -e '/^#define VERSION /i #ifndef VERSION' \ -e '/^#define VERSION /a #endif' \ squidconf.h make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_auto_build make -j42 make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' make all-am make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o afetch_main.o afetch_main.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-a2m.lo `test -f 'a2m.c' || echo './'`a2m.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-alignio.lo `test -f 'alignio.c' || echo './'`alignio.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-clustal.lo `test -f 'clustal.c' || echo './'`clustal.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-file.lo `test -f 'file.c' || echo './'`file.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-getopt.lo `test -f 'getopt.c' || echo './'`getopt.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-gki.lo `test -f 'gki.c' || echo './'`gki.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-hsregex.lo `test -f 'hsregex.c' || echo './'`hsregex.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-msa.lo `test -f 'msa.c' || echo './'`msa.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-msf.lo `test -f 'msf.c' || echo './'`msf.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-phylip.lo `test -f 'phylip.c' || echo './'`phylip.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-selex.lo `test -f 'selex.c' || echo './'`selex.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-sqerror.lo `test -f 'sqerror.c' || echo './'`sqerror.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-sqio.lo `test -f 'sqio.c' || echo './'`sqio.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-squidcore.lo `test -f 'squidcore.c' || echo './'`squidcore.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-sre_ctype.lo `test -f 'sre_ctype.c' || echo './'`sre_ctype.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-sre_random.lo `test -f 'sre_random.c' || echo './'`sre_random.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-sre_string.lo `test -f 'sre_string.c' || echo './'`sre_string.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-ssi.lo `test -f 'ssi.c' || echo './'`ssi.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-stockholm.lo `test -f 'stockholm.c' || echo './'`stockholm.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-types.lo `test -f 'types.c' || echo './'`types.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-vectorops.lo `test -f 'vectorops.c' || echo './'`vectorops.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-aligneval.lo `test -f 'aligneval.c' || echo './'`aligneval.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-cluster.lo `test -f 'cluster.c' || echo './'`cluster.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-dayhoff.lo `test -f 'dayhoff.c' || echo './'`dayhoff.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-dirichlet.lo `test -f 'dirichlet.c' || echo './'`dirichlet.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration 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/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-rk.lo `test -f 'rk.c' || echo './'`rk.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-seqencode.lo `test -f 'seqencode.c' || echo './'`seqencode.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-shuffle.lo `test -f 'shuffle.c' || echo './'`shuffle.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-sre_math.lo `test -f 'sre_math.c' || echo './'`sre_math.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-sre_stack.lo `test -f 'sre_stack.c' || echo './'`sre_stack.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-stopwatch.lo `test -f 'stopwatch.c' || echo './'`stopwatch.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-translate.lo `test -f 'translate.c' || echo './'`translate.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-weight.lo `test -f 'weight.c' || echo './'`weight.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-wuss.lo `test -f 'wuss.c' || echo './'`wuss.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o alistat_main.o alistat_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o aligneval.o aligneval.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o cluster.o cluster.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sre_math.o sre_math.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c msa.c -fPIC -DPIC -o .libs/libsquid_la-msa.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c clustal.c -fPIC -DPIC -o .libs/libsquid_la-clustal.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c phylip.c -fPIC -DPIC -o .libs/libsquid_la-phylip.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c file.c -fPIC -DPIC -o .libs/libsquid_la-file.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c alignio.c -fPIC -DPIC -o .libs/libsquid_la-alignio.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gki.c -fPIC -DPIC -o .libs/libsquid_la-gki.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sqio.c -fPIC -DPIC -o .libs/libsquid_la-sqio.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_random.c -fPIC -DPIC -o .libs/libsquid_la-sre_random.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_string.c -fPIC -DPIC -o .libs/libsquid_la-sre_string.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c stockholm.c -fPIC -DPIC -o .libs/libsquid_la-stockholm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c dayhoff.c -fPIC -DPIC -o .libs/libsquid_la-dayhoff.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c msf.c -fPIC -DPIC -o .libs/libsquid_la-msf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c squidcore.c -fPIC -DPIC -o .libs/libsquid_la-squidcore.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_ctype.c -fPIC -DPIC -o .libs/libsquid_la-sre_ctype.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c cluster.c -fPIC -DPIC -o .libs/libsquid_la-cluster.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c selex.c -fPIC -DPIC -o .libs/libsquid_la-selex.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c getopt.c -fPIC -DPIC -o .libs/libsquid_la-getopt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c a2m.c -fPIC -DPIC -o .libs/libsquid_la-a2m.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c ssi.c -fPIC -DPIC -o .libs/libsquid_la-ssi.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c hsregex.c -fPIC -DPIC -o .libs/libsquid_la-hsregex.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c revcomp.c -fPIC -DPIC -o .libs/libsquid_la-revcomp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c dirichlet.c -fPIC -DPIC -o .libs/libsquid_la-dirichlet.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sqerror.c -fPIC -DPIC -o .libs/libsquid_la-sqerror.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c translate.c -fPIC -DPIC -o .libs/libsquid_la-translate.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c seqencode.c -fPIC -DPIC -o .libs/libsquid_la-seqencode.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c iupac.c -fPIC -DPIC -o .libs/libsquid_la-iupac.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c shuffle.c -fPIC -DPIC -o .libs/libsquid_la-shuffle.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c aligneval.c -fPIC -DPIC -o .libs/libsquid_la-aligneval.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c vectorops.c -fPIC -DPIC -o .libs/libsquid_la-vectorops.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c types.c -fPIC -DPIC -o .libs/libsquid_la-types.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c eps.c -fPIC -DPIC -o .libs/libsquid_la-eps.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_math.c -fPIC -DPIC -o .libs/libsquid_la-sre_math.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_stack.c -fPIC -DPIC -o .libs/libsquid_la-sre_stack.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c rk.c -fPIC -DPIC -o .libs/libsquid_la-rk.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c stopwatch.c -fPIC -DPIC -o .libs/libsquid_la-stopwatch.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c weight.c -fPIC -DPIC -o .libs/libsquid_la-weight.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c wuss.c -fPIC -DPIC -o .libs/libsquid_la-wuss.o gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sre_stack.o sre_stack.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c iupac.c -o libsquid_la-iupac.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c squidcore.c -o libsquid_la-squidcore.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o compalign_main.o compalign_main.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sqerror.c -o libsquid_la-sqerror.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_ctype.c -o libsquid_la-sre_ctype.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c translate.c -o libsquid_la-translate.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c revcomp.c -o libsquid_la-revcomp.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c clustal.c -o libsquid_la-clustal.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c dayhoff.c -o libsquid_la-dayhoff.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c a2m.c -o libsquid_la-a2m.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c eps.c -o libsquid_la-eps.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c rk.c -o libsquid_la-rk.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_stack.c -o libsquid_la-sre_stack.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c getopt.c -o libsquid_la-getopt.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c phylip.c -o libsquid_la-phylip.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_random.c -o libsquid_la-sre_random.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o compstruct_main.o compstruct_main.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gki.c -o libsquid_la-gki.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c file.c -o libsquid_la-file.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c types.c -o libsquid_la-types.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o wuss.o wuss.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o revcomp_main.o revcomp_main.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c seqencode.c -o libsquid_la-seqencode.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c stopwatch.c -o libsquid_la-stopwatch.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_math.c -o libsquid_la-sre_math.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c wuss.c -o libsquid_la-wuss.o >/dev/null 2>&1 dirichlet.c: In function 'AllocDirichlet': dirichlet.c:375:3: warning: '__builtin_strcpy' writing one too many bytes into a region of a size that depends on 'strlen' [-Wstringop-overflow=] 375 | strcpy(d->alphabet, alphabet); | ^ dirichlet.c:374:17: note: destination object of size [0, 2147483647] allocated by 'malloc' 374 | d->alphabet = malloc(sizeof(char) * d->K); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o revcomp.o revcomp.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o shuffle.o shuffle.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o seqsplit_main.o seqsplit_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o seqstat_main.o seqstat_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sfetch_main.o sfetch_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o shuffle_main.o shuffle_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o iupac.o iupac.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sindex_main.o sindex_main.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_string.c -o libsquid_la-sre_string.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sreformat_main.o sreformat_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o eps.o eps.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o translate_main.o translate_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o translate.o translate.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c dirichlet.c -o libsquid_la-dirichlet.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c msf.c -o libsquid_la-msf.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c aligneval.c -o libsquid_la-aligneval.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o weight_main.o weight_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o weight.o weight.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c vectorops.c -o libsquid_la-vectorops.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c cluster.c -o libsquid_la-cluster.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c stockholm.c -o libsquid_la-stockholm.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c shuffle.c -o libsquid_la-shuffle.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c alignio.c -o libsquid_la-alignio.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c weight.c -o libsquid_la-weight.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c selex.c -o libsquid_la-selex.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c hsregex.c -o libsquid_la-hsregex.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c ssi.c -o libsquid_la-ssi.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c msa.c -o libsquid_la-msa.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sqio.c -o libsquid_la-sqio.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -version-info 1:0 -Wl,-z,relro -Wl,-z,now -o libsquid.la -rpath /usr/lib/x86_64-linux-gnu libsquid_la-a2m.lo libsquid_la-alignio.lo libsquid_la-clustal.lo libsquid_la-file.lo libsquid_la-getopt.lo libsquid_la-gki.lo libsquid_la-hsregex.lo libsquid_la-msa.lo libsquid_la-msf.lo libsquid_la-phylip.lo libsquid_la-selex.lo libsquid_la-sqerror.lo libsquid_la-sqio.lo libsquid_la-squidcore.lo libsquid_la-sre_ctype.lo libsquid_la-sre_random.lo libsquid_la-sre_string.lo libsquid_la-ssi.lo libsquid_la-stockholm.lo libsquid_la-types.lo libsquid_la-vectorops.lo libsquid_la-aligneval.lo libsquid_la-cluster.lo libsquid_la-dayhoff.lo libsquid_la-dirichlet.lo libsquid_la-eps.lo libsquid_la-iupac.lo libsquid_la-revcomp.lo libsquid_la-rk.lo libsquid_la-seqencode.lo libsquid_la-shuffle.lo libsquid_la-sre_math.lo libsquid_la-sre_stack.lo libsquid_la-stopwatch.lo libsquid_la-translate.lo libsquid_la-weight.lo libsquid_la-wuss.lo libtool: link: gcc -shared -fPIC -DPIC .libs/libsquid_la-a2m.o .libs/libsquid_la-alignio.o .libs/libsquid_la-clustal.o .libs/libsquid_la-file.o .libs/libsquid_la-getopt.o .libs/libsquid_la-gki.o .libs/libsquid_la-hsregex.o .libs/libsquid_la-msa.o .libs/libsquid_la-msf.o .libs/libsquid_la-phylip.o .libs/libsquid_la-selex.o .libs/libsquid_la-sqerror.o .libs/libsquid_la-sqio.o .libs/libsquid_la-squidcore.o .libs/libsquid_la-sre_ctype.o .libs/libsquid_la-sre_random.o .libs/libsquid_la-sre_string.o .libs/libsquid_la-ssi.o .libs/libsquid_la-stockholm.o .libs/libsquid_la-types.o .libs/libsquid_la-vectorops.o .libs/libsquid_la-aligneval.o .libs/libsquid_la-cluster.o .libs/libsquid_la-dayhoff.o .libs/libsquid_la-dirichlet.o .libs/libsquid_la-eps.o .libs/libsquid_la-iupac.o .libs/libsquid_la-revcomp.o .libs/libsquid_la-rk.o .libs/libsquid_la-seqencode.o .libs/libsquid_la-shuffle.o .libs/libsquid_la-sre_math.o .libs/libsquid_la-sre_stack.o .libs/libsquid_la-stopwatch.o .libs/libsquid_la-translate.o .libs/libsquid_la-weight.o .libs/libsquid_la-wuss.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libsquid.so.1 -o .libs/libsquid.so.1.0.0 libtool: link: (cd ".libs" && rm -f "libsquid.so.1" && ln -s "libsquid.so.1.0.0" "libsquid.so.1") libtool: link: (cd ".libs" && rm -f "libsquid.so" && ln -s "libsquid.so.1.0.0" "libsquid.so") libtool: link: /usr/bin/ar cr .libs/libsquid.a libsquid_la-a2m.o libsquid_la-alignio.o libsquid_la-clustal.o libsquid_la-file.o libsquid_la-getopt.o libsquid_la-gki.o libsquid_la-hsregex.o libsquid_la-msa.o libsquid_la-msf.o libsquid_la-phylip.o libsquid_la-selex.o libsquid_la-sqerror.o libsquid_la-sqio.o libsquid_la-squidcore.o libsquid_la-sre_ctype.o libsquid_la-sre_random.o libsquid_la-sre_string.o libsquid_la-ssi.o libsquid_la-stockholm.o libsquid_la-types.o libsquid_la-vectorops.o libsquid_la-aligneval.o libsquid_la-cluster.o libsquid_la-dayhoff.o libsquid_la-dirichlet.o libsquid_la-eps.o libsquid_la-iupac.o libsquid_la-revcomp.o libsquid_la-rk.o libsquid_la-seqencode.o libsquid_la-shuffle.o libsquid_la-sre_math.o libsquid_la-sre_stack.o libsquid_la-stopwatch.o libsquid_la-translate.o libsquid_la-weight.o libsquid_la-wuss.o libtool: link: ranlib .libs/libsquid.a libtool: link: ( cd ".libs" && rm -f "libsquid.la" && ln -s "../libsquid.la" "libsquid.la" ) /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o afetch afetch_main.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o alistat alistat_main.o aligneval.o cluster.o sre_math.o sre_stack.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o compalign compalign_main.o aligneval.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o compstruct compstruct_main.o sre_math.o sre_stack.o wuss.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o revcomp revcomp_main.o revcomp.o shuffle.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o seqsplit seqsplit_main.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o seqstat seqstat_main.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o sfetch sfetch_main.o revcomp.o shuffle.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o shuffle shuffle_main.o iupac.o shuffle.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o sindex sindex_main.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o sreformat sreformat_main.o eps.o shuffle.o sre_stack.o wuss.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o translate translate_main.o iupac.o revcomp.o shuffle.o sre_stack.o translate.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o weight weight_main.o aligneval.o cluster.o iupac.o sre_math.o sre_stack.o weight.o libsquid.la -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/afetch afetch_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sfetch sfetch_main.o revcomp.o shuffle.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sindex sindex_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/compstruct compstruct_main.o sre_math.o sre_stack.o wuss.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/revcomp revcomp_main.o revcomp.o shuffle.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/compalign compalign_main.o aligneval.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/shuffle shuffle_main.o iupac.o shuffle.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/weight weight_main.o aligneval.o cluster.o iupac.o sre_math.o sre_stack.o weight.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sreformat sreformat_main.o eps.o shuffle.o sre_stack.o wuss.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/seqsplit seqsplit_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/alistat alistat_main.o aligneval.o cluster.o sre_math.o sre_stack.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/seqstat seqstat_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/translate translate_main.o iupac.o revcomp.o shuffle.o sre_stack.o translate.o ./.libs/libsquid.so -lm make[2]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1t64.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' chmod u+x Testsuite/x-base-* Testsuite/bug-1-sfetch* ln -s .libs/libsquid.a dh_auto_test make -j42 check "TESTSUITEFLAGS=-j42 --verbose" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' (cd Testsuite; make CC="gcc" CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection") make[3]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DHAVE_CONFIG_H -L../ -I../ -c sqdconfig_main.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -L../ -I../ -DHAVE_CONFIG_H -o sqdconfig sqdconfig_main.o -lsquid -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DHAVE_CONFIG_H -L../ -I../ -c iospeed_main.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -L../ -I../ -DHAVE_CONFIG_H -o iospeed iospeed_main.o -lsquid -lm /usr/bin/ld: iospeed_main.o: in function `main': ./Testsuite/./Testsuite/iospeed_main.c:28:(.text.startup+0x35): warning: the use of `tmpnam' is dangerous, better use `mkstemp' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DHAVE_CONFIG_H -L../ -I../ -c rndspeed_main.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -L../ -I../ -DHAVE_CONFIG_H -o rndspeed rndspeed_main.o -lsquid -lm make[3]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' (cd Testsuite; make check) make[3]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. fgets(): 0.04u 0.01s 00:00:00.05 Elapsed: 00:00:00 sre_fgets(): 0.07u 0.02s 00:00:00.09 Elapsed: 00:00:00 ReadSeq(): 0.22u 0.03s 00:00:00.25 Elapsed: 00:00:00 iospeed: ok rand(): 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00 sre_random(): 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00 rndspeed: ok x-base-afetch basic tests of afetch ... ok. x-base-alistat basic tests of alistat ... ok. x-base-seqstat basic tests of seqstat ... ok. x-base-sfetch basic tests of sfetch ... ok. x-base-shuffle basic tests of shuffle ... ok. x-base-sindex basic tests of sindex ... ok. x-base-sreformat basic tests of sreformat ... ok. bug-1-sfetch-path sfetch/SSI path bug ... ok. make[3]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' make[2]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' rm -fr -- /tmp/dh-xdg-rundir-2_Z6v7RY cd Testsuite && make clean make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' rm -f *.o *~ Makefile.bak core iospeed rndspeed TAGS gmon.out sqdconfig make[2]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/biosquid.substvars debian/libsquid1t64.substvars debian/libsquid-dev.substvars rm -fr -- debian/.debhelper/generated/biosquid/ debian/biosquid/ debian/tmp/ debian/.debhelper/generated/libsquid1t64/ debian/libsquid1t64/ debian/.debhelper/generated/libsquid-dev/ debian/libsquid-dev/ dh_auto_install install -m0755 -d /build/reproducible-path/biosquid-1.9g\+cvs20050121/debian/tmp make -j1 install DESTDIR=/build/reproducible-path/biosquid-1.9g\+cvs20050121/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' /usr/bin/mkdir -p '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c libsquid.la '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libsquid.so.1.0.0 /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 libtool: install: (cd /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libsquid.so.1.0.0 libsquid.so.1 || { rm -f libsquid.so.1 && ln -s libsquid.so.1.0.0 libsquid.so.1; }; }) libtool: install: (cd /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libsquid.so.1.0.0 libsquid.so || { rm -f libsquid.so && ln -s libsquid.so.1.0.0 libsquid.so; }; }) libtool: install: /usr/bin/install -c .libs/libsquid.lai /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.la libtool: install: /usr/bin/install -c .libs/libsquid.a /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.a libtool: install: chmod 644 /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.a libtool: install: ranlib /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c afetch alistat compalign compstruct revcomp seqsplit seqstat sfetch shuffle sindex sreformat translate weight '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin' libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/afetch /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/afetch libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/alistat /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/alistat libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/compalign /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/compalign libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/compstruct /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/compstruct libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/revcomp /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/revcomp libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/seqsplit /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/seqsplit libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/seqstat /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/seqstat libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/sfetch /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/sfetch libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/shuffle /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/shuffle libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/sindex /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/sindex libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/sreformat /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/sreformat libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/translate /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/translate libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/weight /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/weight /usr/bin/mkdir -p '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/include/biosquid' /usr/bin/install -c -m 644 dirichlet.h rk.h sqfuncs.h gki.h msa.h sre_random.h sre_stack.h ssi.h stopwatch.h vectorops.h '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/include/biosquid' /usr/bin/mkdir -p '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libsquid.pc '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[2]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1t64.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' mv /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/translate /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/stranslate dh_install install -m0755 -d debian/biosquid/usr cp --reflink=auto -a debian/tmp/usr/bin debian/biosquid/usr/ d-shlibmove --commit \ --t64 \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev squid.h usr/include/biosquid \ --movedev squidconf.h usr/include/biosquid \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/libsquid.so Library package automatic movement utility set -e install -d -m 755 debian/libsquid-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libsquid1t64/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.a debian/libsquid-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.so debian/libsquid-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.so.1 debian/libsquid1t64/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 debian/libsquid1t64/usr/lib/x86_64-linux-gnu PKGDEV=libsquid-dev PKGSHL=libsquid1t64 install -d -m 755 debian/libsquid-dev/usr/include mv debian/tmp/usr/include/biosquid debian/libsquid-dev/usr/include install -d -m 755 debian/libsquid-dev/usr/include/biosquid mv squid.h debian/libsquid-dev/usr/include/biosquid install -d -m 755 debian/libsquid-dev/usr/include/biosquid mv squidconf.h debian/libsquid-dev/usr/include/biosquid install -d -m 755 debian/libsquid-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libsquid-dev/usr/lib/x86_64-linux-gnu/pkgconfig find debian -name "lib*.la" -delete # resolve @LICENSE@ by text in header files for HEADER in /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/libsquid-dev/usr/include/biosquid/*.h ; do \ if grep -q '@LICENSE@' ${HEADER} ; then \ sed '/@LICENSE@/,$d' ${HEADER} > ${HEADER}_tmp ; \ sed 's/^/ * /' Licenses/gnu >> ${HEADER}_tmp ; \ sed '0,/@LICENSE@/d' ${HEADER} >> ${HEADER}_tmp ; \ mv ${HEADER}_tmp ${HEADER} ; \ fi ; \ done make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_installdocs install -m0755 -d debian/biosquid/usr/share/doc/biosquid install -p -m0644 debian/biosquid.README.Debian debian/biosquid/usr/share/doc/biosquid/README.Debian install -p -m0644 debian/copyright debian/biosquid/usr/share/doc/biosquid/copyright install -m0755 -d debian/libsquid1t64/usr/share/doc/libsquid1t64 install -p -m0644 debian/copyright debian/libsquid1t64/usr/share/doc/libsquid1t64/copyright install -m0755 -d debian/libsquid-dev/usr/share/doc/libsquid-dev install -m0755 -d debian/libsquid-dev/usr/share/doc/libsquid-dev cp --reflink=auto -a ./debian/README.test debian/libsquid-dev/usr/share/doc/libsquid-dev cp --reflink=auto -a ./debian/tests/run-unit-test debian/libsquid-dev/usr/share/doc/libsquid-dev chmod -R u\+rw,go=rX debian/libsquid-dev/usr/share/doc install -p -m0644 debian/libsquid-dev.README.Debian debian/libsquid-dev/usr/share/doc/libsquid-dev/README.Debian install -p -m0644 debian/copyright debian/libsquid-dev/usr/share/doc/libsquid-dev/copyright dh_installchangelogs install -m0755 -d debian/libsquid1t64/usr/share/doc/libsquid1t64 install -p -m0644 debian/.debhelper/generated/libsquid1t64/dh_installchangelogs.dch.trimmed debian/libsquid1t64/usr/share/doc/libsquid1t64/changelog.Debian install -m0755 -d debian/biosquid/usr/share/doc/biosquid install -p -m0644 debian/.debhelper/generated/biosquid/dh_installchangelogs.dch.trimmed debian/biosquid/usr/share/doc/biosquid/changelog.Debian install -m0755 -d debian/libsquid-dev/usr/share/doc/libsquid-dev install -p -m0644 debian/.debhelper/generated/libsquid-dev/dh_installchangelogs.dch.trimmed debian/libsquid-dev/usr/share/doc/libsquid-dev/changelog.Debian rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1t64.debhelper.log debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_installexamples install -m0755 -d debian/libsquid-dev/usr/share/doc/libsquid-dev/examples cp --reflink=auto -a ./Testsuite debian/libsquid-dev/usr/share/doc/libsquid-dev/examples cp --reflink=auto -a ./Formats debian/libsquid-dev/usr/share/doc/libsquid-dev/examples cd /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/biosquid-dev/usr/share/doc/biosquid-dev/examples/Testsuite; make clean /bin/sh: 1: cd: can't cd to /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/biosquid-dev/usr/share/doc/biosquid-dev/examples/Testsuite make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' rm -f afetch alistat compalign compstruct revcomp seqsplit seqstat sfetch shuffle sindex sreformat translate weight test -z "libsquid.la" || rm -f libsquid.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/libsquid-dev/usr/share/doc/libsquid-dev/examples/Formats/*.pl make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1t64.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_installman install -m0755 -d debian/biosquid/usr/share/man/man1/ install -p -m0644 ./debian/compalign.1 debian/biosquid/usr/share/man/man1/compalign.1 install -m0755 -d debian/biosquid/usr/share/man/man1/ install -p -m0644 ./debian/revcomp.1 debian/biosquid/usr/share/man/man1/revcomp.1 install -m0755 -d debian/biosquid/usr/share/man/man1/ install -p -m0644 ./debian/seqsplit.1 debian/biosquid/usr/share/man/man1/seqsplit.1 install -m0755 -d debian/biosquid/usr/share/man/man1/ install -p -m0644 ./debian/stranslate.1 debian/biosquid/usr/share/man/man1/stranslate.1 install -m0755 -d debian/biosquid/usr/share/man/man1/ install -p -m0644 ./debian/weight.1 debian/biosquid/usr/share/man/man1/weight.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/compalign.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/revcomp.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/seqsplit.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/stranslate.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/weight.1 mv debian/biosquid/usr/share/man/man1/compalign.1.dh-new debian/biosquid/usr/share/man/man1/compalign.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/compalign.1 mv debian/biosquid/usr/share/man/man1/revcomp.1.dh-new debian/biosquid/usr/share/man/man1/revcomp.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/revcomp.1 mv debian/biosquid/usr/share/man/man1/seqsplit.1.dh-new debian/biosquid/usr/share/man/man1/seqsplit.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/seqsplit.1 mv debian/biosquid/usr/share/man/man1/stranslate.1.dh-new debian/biosquid/usr/share/man/man1/stranslate.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/stranslate.1 mv debian/biosquid/usr/share/man/man1/weight.1.dh-new debian/biosquid/usr/share/man/man1/weight.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/weight.1 for manpage in Man/*.man; do \ cp -a ${manpage} /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/biosquid/usr/share/man/man1/`basename ${manpage} .man`.1 ; \ done make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_lintian install -m0755 -d debian/libsquid1t64/usr/share/lintian/overrides install -p -m0644 debian/libsquid1t64.lintian-overrides debian/libsquid1t64/usr/share/lintian/overrides/libsquid1t64 dh_perl dh_link rm -f debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1 ln -s libsquid.so.1.0.0 debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1 rm -f debian/libsquid-dev/usr/lib/x86_64-linux-gnu/libsquid.so ln -s libsquid.so.1.0.0 debian/libsquid-dev/usr/lib/x86_64-linux-gnu/libsquid.so dh_strip_nondeterminism dh_compress cd debian/biosquid cd debian/libsquid1t64 cd debian/libsquid-dev chmod a-x usr/share/doc/libsquid1t64/changelog.Debian chmod a-x usr/share/doc/libsquid-dev/changelog.Debian chmod a-x usr/share/doc/biosquid/changelog.Debian usr/share/man/man1/afetch.1 usr/share/man/man1/alistat.1 usr/share/man/man1/compalign.1 usr/share/man/man1/compstruct.1 usr/share/man/man1/revcomp.1 usr/share/man/man1/seqsplit.1 usr/share/man/man1/seqstat.1 usr/share/man/man1/sfetch.1 usr/share/man/man1/shuffle.1 usr/share/man/man1/sindex.1 usr/share/man/man1/sreformat.1 usr/share/man/man1/stranslate.1 usr/share/man/man1/weight.1 gzip -9nf usr/share/doc/libsquid1t64/changelog.Debian gzip -9nf usr/share/doc/libsquid-dev/changelog.Debian gzip -9nf usr/share/doc/biosquid/changelog.Debian usr/share/man/man1/afetch.1 usr/share/man/man1/alistat.1 usr/share/man/man1/compalign.1 usr/share/man/man1/compstruct.1 usr/share/man/man1/revcomp.1 usr/share/man/man1/seqsplit.1 usr/share/man/man1/seqstat.1 usr/share/man/man1/sfetch.1 usr/share/man/man1/shuffle.1 usr/share/man/man1/sindex.1 usr/share/man/man1/sreformat.1 usr/share/man/man1/stranslate.1 usr/share/man/man1/weight.1 cd '/build/reproducible-path/biosquid-1.9g+cvs20050121' cd '/build/reproducible-path/biosquid-1.9g+cvs20050121' cd '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_fixperms find debian/biosquid ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libsquid1t64 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libsquid-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/biosquid/usr/share/doc -type f -a -true -a ! -regex 'debian/biosquid/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid1t64/usr/share/doc -type f -a -true -a ! -regex 'debian/libsquid1t64/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libsquid-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libsquid1t64/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libsquid-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/biosquid/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid1t64/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid1t64 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/libsquid1t64/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libsquid-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing dh_dwz -a dwz -- debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 install -m0755 -d debian/biosquid/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/biosquid/usr/lib/debug/.dwz/x86_64-linux-gnu/biosquid.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/biosquid.debug -- debian/biosquid/usr/bin/afetch debian/biosquid/usr/bin/alistat debian/biosquid/usr/bin/compalign debian/biosquid/usr/bin/compstruct debian/biosquid/usr/bin/revcomp debian/biosquid/usr/bin/seqsplit debian/biosquid/usr/bin/seqstat debian/biosquid/usr/bin/sfetch debian/biosquid/usr/bin/shuffle debian/biosquid/usr/bin/sindex debian/biosquid/usr/bin/sreformat debian/biosquid/usr/bin/stranslate debian/biosquid/usr/bin/weight objcopy --compress-debug-sections debian/biosquid/usr/lib/debug/.dwz/x86_64-linux-gnu/biosquid.debug chmod 0644 -- debian/biosquid/usr/lib/debug/.dwz/x86_64-linux-gnu/biosquid.debug dh_strip -a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libsquid-dev/usr/lib/x86_64-linux-gnu/libsquid.a install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8d objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/alistat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8d/9d9ec6e46561e313e56c6ed6aee3d45065f47b.debug install -m0755 -d debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/aa objcopy --only-keep-debug --compress-debug-sections debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/aa/34d5498c88990bcdc987644c78394fd2f3bba6.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8d/9d9ec6e46561e313e56c6ed6aee3d45065f47b.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/alistat chmod 0644 -- debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/aa/34d5498c88990bcdc987644c78394fd2f3bba6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8d/9d9ec6e46561e313e56c6ed6aee3d45065f47b.debug debian/biosquid/usr/bin/alistat objcopy --add-gnu-debuglink debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/aa/34d5498c88990bcdc987644c78394fd2f3bba6.debug debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 install -m0755 -d debian/.debhelper/libsquid1t64/dbgsym-root/usr/share/doc ln -s libsquid1t64 debian/.debhelper/libsquid1t64/dbgsym-root/usr/share/doc/libsquid1t64-dbgsym install -m0755 -d debian/.debhelper/libsquid1t64 install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ad objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/shuffle debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ad/c94a56f316165eb2cd1e275e8ce24bfcbd124d.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ad/c94a56f316165eb2cd1e275e8ce24bfcbd124d.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/shuffle objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ad/c94a56f316165eb2cd1e275e8ce24bfcbd124d.debug debian/biosquid/usr/bin/shuffle install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ef objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/revcomp debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ef/938d19d39fcb661e1e02392393efae50bc12ab.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ef/938d19d39fcb661e1e02392393efae50bc12ab.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/revcomp objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ef/938d19d39fcb661e1e02392393efae50bc12ab.debug debian/biosquid/usr/bin/revcomp install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/7e objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sreformat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/7e/7fa423fea9e349d0c281e5cd0ff3d3395906d5.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/7e/7fa423fea9e349d0c281e5cd0ff3d3395906d5.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sreformat objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/7e/7fa423fea9e349d0c281e5cd0ff3d3395906d5.debug debian/biosquid/usr/bin/sreformat install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f0 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/stranslate debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f0/63297ff18d7c7c9648ab466d1e8fc0903f33aa.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f0/63297ff18d7c7c9648ab466d1e8fc0903f33aa.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/stranslate objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f0/63297ff18d7c7c9648ab466d1e8fc0903f33aa.debug debian/biosquid/usr/bin/stranslate install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/91 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/compstruct debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/91/5aaf6b031fa9832f53aa77aa87d3247f45e73b.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/91/5aaf6b031fa9832f53aa77aa87d3247f45e73b.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/compstruct objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/91/5aaf6b031fa9832f53aa77aa87d3247f45e73b.debug debian/biosquid/usr/bin/compstruct install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/da objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/compalign debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/da/b154eaafeb6e2886cf0ba5610fd4fbfdbee7d0.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/da/b154eaafeb6e2886cf0ba5610fd4fbfdbee7d0.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/compalign objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/da/b154eaafeb6e2886cf0ba5610fd4fbfdbee7d0.debug debian/biosquid/usr/bin/compalign install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/d5 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sindex debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/d5/030b4cb10b7e6936e89816db8d00190fb0bd02.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/d5/030b4cb10b7e6936e89816db8d00190fb0bd02.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sindex objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/d5/030b4cb10b7e6936e89816db8d00190fb0bd02.debug debian/biosquid/usr/bin/sindex install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/93 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/seqsplit debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/93/f4775282a0c18ecf0732c2941137b8199b2ac1.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/93/f4775282a0c18ecf0732c2941137b8199b2ac1.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/seqsplit objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/93/f4775282a0c18ecf0732c2941137b8199b2ac1.debug debian/biosquid/usr/bin/seqsplit install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/96 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/seqstat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/96/4086fa06c17bb67f33f39954495aa08947c9a4.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/96/4086fa06c17bb67f33f39954495aa08947c9a4.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/seqstat objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/96/4086fa06c17bb67f33f39954495aa08947c9a4.debug debian/biosquid/usr/bin/seqstat install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/b6 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/weight debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/b6/e0d3a1e611d10776bcfcd67f9527ab067f703a.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/b6/e0d3a1e611d10776bcfcd67f9527ab067f703a.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/weight objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/b6/e0d3a1e611d10776bcfcd67f9527ab067f703a.debug debian/biosquid/usr/bin/weight install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/d0 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/afetch debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/d0/f67fa89ab29cf55a3b87c9b10604784177f9fd.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/d0/f67fa89ab29cf55a3b87c9b10604784177f9fd.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/afetch objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/d0/f67fa89ab29cf55a3b87c9b10604784177f9fd.debug debian/biosquid/usr/bin/afetch install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/b8 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sfetch debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/b8/e473368483b3fb049295f148c34c5218b33dcb.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/b8/e473368483b3fb049295f148c34c5218b33dcb.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sfetch objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/b8/e473368483b3fb049295f148c34c5218b33dcb.debug debian/biosquid/usr/bin/sfetch install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/biosquid/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/biosquid/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/biosquid/usr/lib/debug install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/share/doc ln -s biosquid debian/.debhelper/biosquid/dbgsym-root/usr/share/doc/biosquid-dbgsym install -m0755 -d debian/.debhelper/biosquid dh_makeshlibs -a rm -f debian/biosquid/DEBIAN/shlibs rm -f debian/libsquid1t64/DEBIAN/shlibs install -m0755 -d debian/libsquid1t64/DEBIAN echo "libsquid 1 libsquid1t64 (>= 1.9g+cvs20050121)" >> debian/libsquid1t64/DEBIAN/shlibs chmod 0644 -- debian/libsquid1t64/DEBIAN/shlibs mv debian/.debhelper/generated/libsquid1t64/triggers.new debian/.debhelper/generated/libsquid1t64/triggers mv debian/libsquid1t64.substvars.new debian/libsquid1t64.substvars rm -f debian/libsquid-dev/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/biosquid/DEBIAN dpkg-shlibdeps -Tdebian/biosquid.substvars debian/biosquid/usr/bin/alistat debian/biosquid/usr/bin/shuffle debian/biosquid/usr/bin/revcomp debian/biosquid/usr/bin/sreformat debian/biosquid/usr/bin/stranslate debian/biosquid/usr/bin/compstruct debian/biosquid/usr/bin/compalign debian/biosquid/usr/bin/sindex debian/biosquid/usr/bin/seqsplit debian/biosquid/usr/bin/seqstat debian/biosquid/usr/bin/weight debian/biosquid/usr/bin/afetch debian/biosquid/usr/bin/sfetch install -m0755 -d debian/libsquid1t64/DEBIAN dpkg-shlibdeps -Tdebian/libsquid1t64.substvars debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 dpkg-shlibdeps: warning: symbol sqrt used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol pow used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol exp used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol tan used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol log used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dh_installdeb install -m0755 -d debian/biosquid/DEBIAN install -m0755 -d debian/libsquid1t64/DEBIAN install -p -m0644 debian/.debhelper/generated/libsquid1t64/triggers debian/libsquid1t64/DEBIAN/triggers install -m0755 -d debian/libsquid-dev/DEBIAN dh_gencontrol install -m0755 -d debian/libsquid-dev/DEBIAN echo misc:Depends= >> debian/libsquid-dev.substvars echo misc:Pre-Depends= >> debian/libsquid-dev.substvars dpkg-gencontrol -plibsquid-dev -ldebian/changelog -Tdebian/libsquid-dev.substvars -cdebian/control -Pdebian/libsquid-dev install -m0755 -d debian/biosquid/DEBIAN echo misc:Depends= >> debian/biosquid.substvars echo misc:Pre-Depends= >> debian/biosquid.substvars install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/DEBIAN dpkg-gencontrol -pbiosquid -ldebian/changelog -Tdebian/biosquid.substvars -cdebian/control -Pdebian/.debhelper/biosquid/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=biosquid-dbgsym "-DDepends=biosquid (= \${binary:Version})" "-DDescription=debug symbols for biosquid" "-DBuild-Ids=7e7fa423fea9e349d0c281e5cd0ff3d3395906d5 8d9d9ec6e46561e313e56c6ed6aee3d45065f47b 915aaf6b031fa9832f53aa77aa87d3247f45e73b 93f4775282a0c18ecf0732c2941137b8199b2ac1 964086fa06c17bb67f33f39954495aa08947c9a4 adc94a56f316165eb2cd1e275e8ce24bfcbd124d b6e0d3a1e611d10776bcfcd67f9527ab067f703a b8e473368483b3fb049295f148c34c5218b33dcb d0f67fa89ab29cf55a3b87c9b10604784177f9fd d5030b4cb10b7e6936e89816db8d00190fb0bd02 dab154eaafeb6e2886cf0ba5610fd4fbfdbee7d0 ef938d19d39fcb661e1e02392393efae50bc12ab f063297ff18d7c7c9648ab466d1e8fc0903f33aa" -DSection=debug -UMulti-Arch -UReplaces -UBreaks install -m0755 -d debian/libsquid1t64/DEBIAN echo misc:Depends= >> debian/libsquid1t64.substvars echo misc:Pre-Depends= >> debian/libsquid1t64.substvars install -m0755 -d debian/.debhelper/libsquid1t64/dbgsym-root/DEBIAN dpkg-gencontrol -plibsquid1t64 -ldebian/changelog -Tdebian/libsquid1t64.substvars -cdebian/control -Pdebian/.debhelper/libsquid1t64/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libsquid1t64-dbgsym "-DDepends=libsquid1t64 (= \${binary:Version})" "-DDescription=debug symbols for libsquid1t64" -DBuild-Ids=aa34d5498c88990bcdc987644c78394fd2f3bba6 -DSection=debug -UReplaces -UBreaks dpkg-gencontrol: warning: Depends field of package libsquid-dev: substitution variable ${shlibs:Depends} used, but is not defined chmod 0644 -- debian/libsquid-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/libsquid1t64/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibsquid1t64 -ldebian/changelog -Tdebian/libsquid1t64.substvars -cdebian/control -Pdebian/libsquid1t64 chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/DEBIAN/control dpkg-gencontrol -pbiosquid -ldebian/changelog -Tdebian/biosquid.substvars -cdebian/control -Pdebian/biosquid chmod 0644 -- debian/libsquid1t64/DEBIAN/control chmod 0644 -- debian/biosquid/DEBIAN/control dh_md5sums install -m0755 -d debian/biosquid/DEBIAN install -m0755 -d debian/libsquid-dev/DEBIAN install -m0755 -d debian/libsquid1t64/DEBIAN cd debian/biosquid >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libsquid1t64 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libsquid-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libsquid1t64/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libsquid1t64/dbgsym-root/DEBIAN chmod 0644 -- debian/biosquid/DEBIAN/md5sums install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/DEBIAN chmod 0644 -- debian/libsquid-dev/DEBIAN/md5sums cd debian/.debhelper/libsquid1t64/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/.debhelper/biosquid/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libsquid1t64/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/biosquid .. dpkg-deb --root-owner-group --build debian/.debhelper/biosquid/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libsquid1t64 .. dpkg-deb --root-owner-group --build debian/.debhelper/libsquid1t64/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libsquid-dev .. dpkg-deb: building package 'biosquid-dbgsym' in '../biosquid-dbgsym_1.9g+cvs20050121-15.1_amd64.deb'. dpkg-deb: building package 'biosquid' in '../biosquid_1.9g+cvs20050121-15.1_amd64.deb'. dpkg-deb: building package 'libsquid1t64-dbgsym' in '../libsquid1t64-dbgsym_1.9g+cvs20050121-15.1_amd64.deb'. dpkg-deb: building package 'libsquid1t64' in '../libsquid1t64_1.9g+cvs20050121-15.1_amd64.deb'. dpkg-deb: building package 'libsquid-dev' in '../libsquid-dev_1.9g+cvs20050121-15.1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo dpkg-genchanges --build=binary -O../biosquid_1.9g+cvs20050121-15.1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1012995 and its subdirectories I: Current time: Fri Jul 4 13:06:53 -12 2025 I: pbuilder-time-stamp: 1751677613 Sat Jun 1 18:43:55 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Sat Jun 1 18:43:55 UTC 2024 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Sat Jun 1 18:45:41 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Sat Jun 1 18:45:42 UTC 2024 I: biosquid_1.9g+cvs20050121-15.1_amd64.changes: Format: 1.8 Date: Wed, 28 Feb 2024 18:29:54 +0000 Source: biosquid Binary: biosquid biosquid-dbgsym libsquid-dev libsquid1t64 libsquid1t64-dbgsym Architecture: amd64 Version: 1.9g+cvs20050121-15.1 Distribution: unstable Urgency: medium Maintainer: Debian-Med Packaging Team Changed-By: Steve Langasek Description: biosquid - utilities for biological sequence analysis libsquid-dev - biosquid headers and static library for biological sequence analy libsquid1t64 - biosquid dynamic library for biological sequence analysis Closes: 1061931 Changes: biosquid (1.9g+cvs20050121-15.1) unstable; urgency=medium . * Non-maintainer upload. * Rename libraries for 64-bit time_t transition. Closes: #1061931 Checksums-Sha1: 7caa7d16b8b664e80efa1938996c74bcdbe8fd34 180532 biosquid-dbgsym_1.9g+cvs20050121-15.1_amd64.deb 4f79f520600f4d9da7db3e4c9f07d9e3f0f95c4b 6572 biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo 95a5c3a0852accbb7fba08c64ef3cc22c576e2ef 79064 biosquid_1.9g+cvs20050121-15.1_amd64.deb 89988f8a9e36feae7d2a7878b89795400e5672ec 143896 libsquid-dev_1.9g+cvs20050121-15.1_amd64.deb 0e98bc3dfa13a41d0536b7ee4b11c9d76103d37f 182288 libsquid1t64-dbgsym_1.9g+cvs20050121-15.1_amd64.deb 4964309224d9ab8f6d4297fba3cd313ca94df77e 75896 libsquid1t64_1.9g+cvs20050121-15.1_amd64.deb Checksums-Sha256: dfa73a28b44bfb7cba75957b6750f63e82e087e186a138d57c4fe8a80f886073 180532 biosquid-dbgsym_1.9g+cvs20050121-15.1_amd64.deb f6c569b29cb1d4be394a9aff70d28bd6442e193ac371b9753c340019c308ca01 6572 biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo 39184abc012e27a4187247029d31df68b3b26c49b3cd6e05ac864966c22a4d2e 79064 biosquid_1.9g+cvs20050121-15.1_amd64.deb 94608cb19654f532ada38dedc33410b1627a63ec114a43b7197cb3b3466fab30 143896 libsquid-dev_1.9g+cvs20050121-15.1_amd64.deb 3526c8a41c51c15125d5fc95e0d64fede074f1fe8444aa46d3d08091e68e7f54 182288 libsquid1t64-dbgsym_1.9g+cvs20050121-15.1_amd64.deb dd5b54c4917536b1b6279cf5f2bb91ec3423f0b206112904e7c91f2b8797731d 75896 libsquid1t64_1.9g+cvs20050121-15.1_amd64.deb Files: 5d6bf5320cc457f2794daf57e60b18dd 180532 debug optional biosquid-dbgsym_1.9g+cvs20050121-15.1_amd64.deb 893fb6a3b8e3dd0599f0f2d03dcebda2 6572 science optional biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo 0d10d6ce317c547c1b0a5cce790bc2c0 79064 science optional biosquid_1.9g+cvs20050121-15.1_amd64.deb 61a62b6f31aa9b2617d450f7209ecf41 143896 libdevel optional libsquid-dev_1.9g+cvs20050121-15.1_amd64.deb 51bce8fd37bdcec910d558e27fd29748 182288 debug optional libsquid1t64-dbgsym_1.9g+cvs20050121-15.1_amd64.deb 3fd8e68fa70edce793476683486883a0 75896 libs optional libsquid1t64_1.9g+cvs20050121-15.1_amd64.deb Sat Jun 1 18:45:43 UTC 2024 I: diffoscope 268 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_6-9548.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.vBC284Rz/biosquid_1.9g+cvs20050121-15.1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.vBC284Rz/biosquid_1.9g+cvs20050121-15.1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.vBC284Rz/biosquid_1.9g+cvs20050121-15.1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.vBC284Rz/b1/biosquid_1.9g+cvs20050121-15.1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.vBC284Rz/b2/biosquid_1.9g+cvs20050121-15.1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.431s) 0.431s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.031s) 0.031s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 795ms CPU time consumed: 793ms Sat Jun 1 18:45:44 UTC 2024 I: diffoscope 268 found no differences in the changes files, and a .buildinfo file also exists. Sat Jun 1 18:45:44 UTC 2024 I: biosquid from unstable built successfully and reproducibly on amd64. Sat Jun 1 18:45:46 UTC 2024 I: Submitting .buildinfo files to external archives: Sat Jun 1 18:45:46 UTC 2024 I: Submitting 8.0K b1/biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo.asc Sat Jun 1 18:45:47 UTC 2024 I: Submitting 8.0K b2/biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo.asc Sat Jun 1 18:45:48 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Jun 1 18:45:48 UTC 2024 I: Done submitting .buildinfo files. Sat Jun 1 18:45:48 UTC 2024 I: Removing signed biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo.asc files: removed './b1/biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo.asc' removed './b2/biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo.asc'