Fri Jul 23 19:05:21 UTC 2021 I: starting to build r-bioc-shortread/bullseye/armhf on jenkins on '2021-07-23 19:04' Fri Jul 23 19:05:21 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_44/1455/console.log Fri Jul 23 19:05:21 UTC 2021 I: Downloading source for bullseye/r-bioc-shortread=1.48.0-2 --2021-07-23 19:05:21-- http://cdn-fastly.deb.debian.org/debian/pool/main/r/r-bioc-shortread/r-bioc-shortread_1.48.0-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2531 (2.5K) Saving to: ‘r-bioc-shortread_1.48.0-2.dsc’ 0K .. 100% 197M=0s 2021-07-23 19:05:21 (197 MB/s) - ‘r-bioc-shortread_1.48.0-2.dsc’ saved [2531/2531] Fri Jul 23 19:05:21 UTC 2021 I: r-bioc-shortread_1.48.0-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: r-bioc-shortread Binary: r-bioc-shortread Architecture: any Version: 1.48.0-2 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/ShortRead/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-shortread Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-shortread.git Testsuite: autopkgtest, autopkgtest-pkg-r Testsuite-Triggers: r-cran-runit Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.23.3), r-bioc-biocparallel, r-bioc-biostrings (>= 2.47.6), r-bioc-rsamtools (>= 1.31.2), r-bioc-genomicalignments (>= 1.15.6), r-bioc-biobase, r-bioc-s4vectors (>= 0.17.25), r-bioc-iranges (>= 2.13.12), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-genomicranges (>= 1.31.8), r-cran-hwriter, r-bioc-zlibbioc, r-cran-lattice, r-cran-latticeextra, r-bioc-xvector, r-bioc-rhtslib Package-List: r-bioc-shortread deb gnu-r optional arch=any Checksums-Sha1: 55dc67894bed2eca4b043ed354c3de3a341bf5e5 5184521 r-bioc-shortread_1.48.0.orig.tar.gz 42d4d8ba9a9cbdc943b1120e69751096cd967ed8 5548 r-bioc-shortread_1.48.0-2.debian.tar.xz Checksums-Sha256: 69badfa1ca5c075ff29adda33d6bd71a2b62433640dcea45ae15180347439570 5184521 r-bioc-shortread_1.48.0.orig.tar.gz 89c0c3a0ec617f41947b1920ca75190e764626ae6f11b1cfa688edf10018ca43 5548 r-bioc-shortread_1.48.0-2.debian.tar.xz Files: a1d99be87db91cbbcda1dcfead019d0f 5184521 r-bioc-shortread_1.48.0.orig.tar.gz 980e1f395b69c5f8cee3743c0921cdb4 5548 r-bioc-shortread_1.48.0-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmAf0PoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFl+g/+Lqiv9HLcaVJsJ6VATLuyZnyTv24MoU6Y 8iJMfzDA+FSfZes4dVehiqx/h7dftCtPJwKBMnGv2YBq2IHkHPftf9MLEZxOyskD PgXAmSwqVWp/hieYgl0wyZT66UWr+JRVwD32JHGQDowp0BikFYT471d98Q8otJbD pJG8b5raMSsf0TZrxkgIB7JeA6EvNTSHC4g73RgXiCJ+N6m2zAlQss0Uxv6fFX8C 0ceBCcWVo4301RAg3n3xsQTPkmQYSGvwa7owstO8T1vO3VrorF2cUh43+oDfxlWR VLA8Z0Djx+COXxUUh+gMf+xdHzY7Af41Uc71WKQERf8DZXFBJ0FTLtX1+/0ewgNX t0L2p/RkoLiJP16LO5NdRON6ipGxd5ynPMt5Gg2mxAgrPP54Ir+Xf8zc677OQdR/ H+9+T+xhjw5gFqq6Pf5nyBriTSMBmJe2NogTINlMkMEZSGdf9wamQ7YqpOuirIiW Dsv+xy1Fxp5PPXCJgxjMVg9lPKLAxyYTby7PfukkbJWmoBdgvnU9vUACmD6jId8a K1wyI6gqpnQR1UXVUUwmFtRAeFdhLcMXdnTaNKOxLL0Z0a8z4Xj910VT/5YUvrhA DdeDk/+YzMak3FZkna/75nKjBQzGORYWr51/BBBk64NzmDvBMfR+X90iRudDZfYh j3MLov9OUT4= =8QE/ -----END PGP SIGNATURE----- Fri Jul 23 19:05:21 UTC 2021 I: Checking whether the package is not for us Fri Jul 23 19:05:21 UTC 2021 I: Starting 1st build on remote node cbxi4pro0-armhf-rb.debian.net. Fri Jul 23 19:05:21 UTC 2021 I: Preparing to do remote build '1' on cbxi4pro0-armhf-rb.debian.net. Fri Jul 23 19:19:27 UTC 2021 I: Deleting $TMPDIR on cbxi4pro0-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Jul 23 07:05:36 -12 2021 I: pbuilder-time-stamp: 1627067136 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-shortread_1.48.0-2.dsc] I: copying [./r-bioc-shortread_1.48.0.orig.tar.gz] I: copying [./r-bioc-shortread_1.48.0-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.DBMiFu3b/trustedkeys.kbx': General error gpgv: Signature made Sat Feb 6 23:37:30 2021 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-shortread_1.48.0-2.dsc dpkg-source: info: extracting r-bioc-shortread in r-bioc-shortread-1.48.0 dpkg-source: info: unpacking r-bioc-shortread_1.48.0.orig.tar.gz dpkg-source: info: unpacking r-bioc-shortread_1.48.0-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/6770/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' DISTRIBUTION='' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='96bb8ecaf04f412da7fa47a0eb116d32' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='6770' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.vWeIrjhZFd/pbuilderrc_B3Av --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.vWeIrjhZFd/b1 --logfile b1/build.log r-bioc-shortread_1.48.0-2.dsc' SUDO_GID='115' SUDO_UID='111' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:8000/' I: uname -a Linux cbxi4pro0 5.10.0-7-armmp #1 SMP Debian 5.10.40-1 (2021-05-28) armv7l GNU/Linux I: ls -l /bin total 3580 -rwxr-xr-x 1 root root 816764 Jun 21 14:26 bash -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash -rwxr-xr-x 1 root root 75880 Sep 22 2020 date -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd -rwxr-xr-x 1 root root 59912 Sep 22 2020 df -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir -rwxr-xr-x 1 root root 55012 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 22496 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 47492 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln -rwxr-xr-x 1 root root 35068 Feb 7 2020 login -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls -rwxr-xr-x 1 root root 99940 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 34408 Feb 7 02:38 more -rwsr-xr-x 1 root root 34400 Feb 7 02:38 mount -rwxr-xr-x 1 root root 9824 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 21 21:28 sh -> dash -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty -rwsr-xr-x 1 root root 46704 Feb 7 02:38 su -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync -rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch -rwxr-xr-x 1 root root 22496 Sep 22 2020 true -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 22108 Feb 7 02:38 umount -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir -rwxr-xr-x 1 root root 38512 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/6770/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.23.3), r-bioc-biocparallel, r-bioc-biostrings (>= 2.47.6), r-bioc-rsamtools (>= 1.31.2), r-bioc-genomicalignments (>= 1.15.6), r-bioc-biobase, r-bioc-s4vectors (>= 0.17.25), r-bioc-iranges (>= 2.13.12), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-genomicranges (>= 1.31.8), r-cran-hwriter, r-bioc-zlibbioc, r-cran-lattice, r-cran-latticeextra, r-bioc-xvector, r-bioc-rhtslib dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics (>= 0.23.3); however: Package r-bioc-biocgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocparallel; however: Package r-bioc-biocparallel is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biostrings (>= 2.47.6); however: Package r-bioc-biostrings is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rsamtools (>= 1.31.2); however: Package r-bioc-rsamtools is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicalignments (>= 1.15.6); however: Package r-bioc-genomicalignments is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biobase; however: Package r-bioc-biobase is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors (>= 0.17.25); however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-iranges (>= 2.13.12); however: Package r-bioc-iranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomeinfodb (>= 1.15.2); however: Package r-bioc-genomeinfodb is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicranges (>= 1.31.8); however: Package r-bioc-genomicranges is not installed. pbuilder-satisfydepends-dummy depends on r-cran-hwriter; however: Package r-cran-hwriter is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-zlibbioc; however: Package r-bioc-zlibbioc is not installed. pbuilder-satisfydepends-dummy depends on r-cran-lattice; however: Package r-cran-lattice is not installed. pbuilder-satisfydepends-dummy depends on r-cran-latticeextra; however: Package r-cran-latticeextra is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-xvector; however: Package r-bioc-xvector is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rhtslib; however: Package r-bioc-rhtslib is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gfortran{a} gfortran-10{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libcurl3-gnutls{a} libcurl4{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-10-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu67{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} liblapack-dev{a} liblapack3{a} libldap-2.4-2{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnghttp2-14{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre16-3{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix2{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libreadline-dev{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff5{a} libtimedate-perl{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp6{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} m4{a} man-db{a} openssl{a} pkg-config{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-biocparallel{a} r-bioc-biostrings{a} r-bioc-delayedarray{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-genomicalignments{a} r-bioc-genomicranges{a} r-bioc-iranges{a} r-bioc-matrixgenerics{a} r-bioc-rhtslib{a} r-bioc-rsamtools{a} r-bioc-s4vectors{a} r-bioc-summarizedexperiment{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-bh{a} r-cran-bitops{a} r-cran-crayon{a} r-cran-formatr{a} r-cran-futile.logger{a} r-cran-futile.options{a} r-cran-hwriter{a} r-cran-jpeg{a} r-cran-lambda.r{a} r-cran-lattice{a} r-cran-latticeextra{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-png{a} r-cran-rcolorbrewer{a} r-cran-rcurl{a} r-cran-snow{a} readline-common{a} sensible-utils{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage libarchive-cpio-perl libclass-c3-xs-perl libclone-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-bioc-annotate r-bioc-shortread r-cran-batchjobs r-cran-batchtools r-cran-codetools r-cran-digest r-cran-doparallel r-cran-mockery r-cran-rmpi r-cran-runit r-cran-survival r-cran-testit r-cran-testthat r-cran-withr r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 208 newly installed, 0 to remove and 0 not upgraded. Need to get 153 MB of archives. After unpacking 454 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main armhf bsdextrautils armhf 2.36.1-7 [138 kB] Get: 2 http://deb.debian.org/debian bullseye/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 3 http://deb.debian.org/debian bullseye/main armhf groff-base armhf 1.22.4-6 [847 kB] Get: 4 http://deb.debian.org/debian bullseye/main armhf libpipeline1 armhf 1.5.3-1 [30.1 kB] Get: 5 http://deb.debian.org/debian bullseye/main armhf man-db armhf 2.9.4-2 [1319 kB] Get: 6 http://deb.debian.org/debian bullseye/main armhf readline-common all 8.1-1 [73.7 kB] Get: 7 http://deb.debian.org/debian bullseye/main armhf libreadline8 armhf 8.1-1 [147 kB] Get: 8 http://deb.debian.org/debian bullseye/main armhf sensible-utils all 0.0.14 [14.8 kB] Get: 9 http://deb.debian.org/debian bullseye/main armhf openssl armhf 1.1.1k-1 [826 kB] Get: 10 http://deb.debian.org/debian bullseye/main armhf ca-certificates all 20210119 [158 kB] Get: 11 http://deb.debian.org/debian bullseye/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB] Get: 12 http://deb.debian.org/debian bullseye/main armhf libmagic1 armhf 1:5.39-3 [117 kB] Get: 13 http://deb.debian.org/debian bullseye/main armhf file armhf 1:5.39-3 [68.1 kB] Get: 14 http://deb.debian.org/debian bullseye/main armhf gettext-base armhf 0.21-4 [171 kB] Get: 15 http://deb.debian.org/debian bullseye/main armhf ucf all 3.0043 [74.0 kB] Get: 16 http://deb.debian.org/debian bullseye/main armhf libsigsegv2 armhf 2.13-1 [34.0 kB] Get: 17 http://deb.debian.org/debian bullseye/main armhf m4 armhf 1.4.18-5 [192 kB] Get: 18 http://deb.debian.org/debian bullseye/main armhf autoconf all 2.69-14 [313 kB] Get: 19 http://deb.debian.org/debian bullseye/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main armhf automake all 1:1.16.3-2 [814 kB] Get: 21 http://deb.debian.org/debian bullseye/main armhf autopoint all 0.21-4 [510 kB] Get: 22 http://deb.debian.org/debian bullseye/main armhf dctrl-tools armhf 2.24-3 [96.0 kB] Get: 23 http://deb.debian.org/debian bullseye/main armhf libdebhelper-perl all 13.3.4 [189 kB] Get: 24 http://deb.debian.org/debian bullseye/main armhf libtool all 2.4.6-15 [513 kB] Get: 25 http://deb.debian.org/debian bullseye/main armhf dh-autoreconf all 20 [17.1 kB] Get: 26 http://deb.debian.org/debian bullseye/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 27 http://deb.debian.org/debian bullseye/main armhf libsub-override-perl all 0.09-2 [10.2 kB] Get: 28 http://deb.debian.org/debian bullseye/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 29 http://deb.debian.org/debian bullseye/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 30 http://deb.debian.org/debian bullseye/main armhf libelf1 armhf 0.183-1 [161 kB] Get: 31 http://deb.debian.org/debian bullseye/main armhf dwz armhf 0.13+20210201-1 [179 kB] Get: 32 http://deb.debian.org/debian bullseye/main armhf libicu67 armhf 67.1-7 [8319 kB] Get: 33 http://deb.debian.org/debian bullseye/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [602 kB] Get: 34 http://deb.debian.org/debian bullseye/main armhf gettext armhf 0.21-4 [1243 kB] Get: 35 http://deb.debian.org/debian bullseye/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 36 http://deb.debian.org/debian bullseye/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 37 http://deb.debian.org/debian bullseye/main armhf debhelper all 13.3.4 [1049 kB] Get: 38 http://deb.debian.org/debian bullseye/main armhf zip armhf 3.0-12 [222 kB] Get: 39 http://deb.debian.org/debian bullseye/main armhf unzip armhf 6.0-26 [157 kB] Get: 40 http://deb.debian.org/debian bullseye/main armhf libpaper1 armhf 1.1.28+b1 [20.8 kB] Get: 41 http://deb.debian.org/debian bullseye/main armhf libpaper-utils armhf 1.1.28+b1 [17.9 kB] Get: 42 http://deb.debian.org/debian bullseye/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 43 http://deb.debian.org/debian bullseye/main armhf libblas3 armhf 3.9.0-3 [109 kB] Get: 44 http://deb.debian.org/debian bullseye/main armhf libexpat1 armhf 2.2.10-2 [76.3 kB] Get: 45 http://deb.debian.org/debian bullseye/main armhf libbrotli1 armhf 1.0.9-2+b2 [262 kB] Get: 46 http://deb.debian.org/debian bullseye/main armhf libpng16-16 armhf 1.6.37-3 [277 kB] Get: 47 http://deb.debian.org/debian bullseye/main armhf libfreetype6 armhf 2.10.4+dfsg-1 [357 kB] Get: 48 http://deb.debian.org/debian bullseye/main armhf fonts-dejavu-core all 2.37-2 [1069 kB] Get: 49 http://deb.debian.org/debian bullseye/main armhf fontconfig-config all 2.13.1-4.2 [281 kB] Get: 50 http://deb.debian.org/debian bullseye/main armhf libfontconfig1 armhf 2.13.1-4.2 [329 kB] Get: 51 http://deb.debian.org/debian bullseye/main armhf libpixman-1-0 armhf 0.40.0-1 [466 kB] Get: 52 http://deb.debian.org/debian bullseye/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 53 http://deb.debian.org/debian bullseye/main armhf libmd0 armhf 1.0.3-3 [27.4 kB] Get: 54 http://deb.debian.org/debian bullseye/main armhf libbsd0 armhf 0.11.3-1 [103 kB] Get: 55 http://deb.debian.org/debian bullseye/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 56 http://deb.debian.org/debian bullseye/main armhf libxcb1 armhf 1.14-3 [136 kB] Get: 57 http://deb.debian.org/debian bullseye/main armhf libx11-data all 2:1.7.1-1 [310 kB] Get: 58 http://deb.debian.org/debian bullseye/main armhf libx11-6 armhf 2:1.7.1-1 [712 kB] Get: 59 http://deb.debian.org/debian bullseye/main armhf libxcb-render0 armhf 1.14-3 [110 kB] Get: 60 http://deb.debian.org/debian bullseye/main armhf libxcb-shm0 armhf 1.14-3 [101 kB] Get: 61 http://deb.debian.org/debian bullseye/main armhf libxext6 armhf 2:1.3.3-1.1 [47.8 kB] Get: 62 http://deb.debian.org/debian bullseye/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB] Get: 63 http://deb.debian.org/debian bullseye/main armhf libcairo2 armhf 1.16.0-5 [615 kB] Get: 64 http://deb.debian.org/debian bullseye/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-2.1 [67.6 kB] Get: 65 http://deb.debian.org/debian bullseye/main armhf libsasl2-2 armhf 2.1.27+dfsg-2.1 [99.1 kB] Get: 66 http://deb.debian.org/debian bullseye/main armhf libldap-2.4-2 armhf 2.4.57+dfsg-3 [210 kB] Get: 67 http://deb.debian.org/debian bullseye/main armhf libnghttp2-14 armhf 1.43.0-1 [65.6 kB] Get: 68 http://deb.debian.org/debian bullseye/main armhf libpsl5 armhf 0.21.0-1.2 [56.1 kB] Get: 69 http://deb.debian.org/debian bullseye/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 70 http://deb.debian.org/debian bullseye/main armhf libssh2-1 armhf 1.9.0-2 [143 kB] Get: 71 http://deb.debian.org/debian bullseye/main armhf libcurl4 armhf 7.74.0-1.3+b1 [310 kB] Get: 72 http://deb.debian.org/debian bullseye/main armhf libglib2.0-0 armhf 2.66.8-1 [1206 kB] Get: 73 http://deb.debian.org/debian bullseye/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [123 kB] Get: 74 http://deb.debian.org/debian bullseye/main armhf libgfortran5 armhf 10.2.1-6 [237 kB] Get: 75 http://deb.debian.org/debian bullseye/main armhf liblapack3 armhf 3.9.0-3 [1651 kB] Get: 76 http://deb.debian.org/debian bullseye/main armhf fontconfig armhf 2.13.1-4.2 [415 kB] Get: 77 http://deb.debian.org/debian bullseye/main armhf libfribidi0 armhf 1.0.8-2 [62.9 kB] Get: 78 http://deb.debian.org/debian bullseye/main armhf libgraphite2-3 armhf 1.3.14-1 [70.5 kB] Get: 79 http://deb.debian.org/debian bullseye/main armhf libharfbuzz0b armhf 2.7.4-1 [1427 kB] Get: 80 http://deb.debian.org/debian bullseye/main armhf libthai-data all 0.1.28-3 [170 kB] Get: 81 http://deb.debian.org/debian bullseye/main armhf libdatrie1 armhf 0.2.13-1 [39.4 kB] Get: 82 http://deb.debian.org/debian bullseye/main armhf libthai0 armhf 0.1.28-3 [50.9 kB] Get: 83 http://deb.debian.org/debian bullseye/main armhf libpango-1.0-0 armhf 1.46.2-3 [173 kB] Get: 84 http://deb.debian.org/debian bullseye/main armhf libpangoft2-1.0-0 armhf 1.46.2-3 [56.1 kB] Get: 85 http://deb.debian.org/debian bullseye/main armhf libpangocairo-1.0-0 armhf 1.46.2-3 [46.8 kB] Get: 86 http://deb.debian.org/debian bullseye/main armhf libtcl8.6 armhf 8.6.11+dfsg-1 [913 kB] Get: 87 http://deb.debian.org/debian bullseye/main armhf libdeflate0 armhf 1.7-1 [43.1 kB] Get: 88 http://deb.debian.org/debian bullseye/main armhf libjbig0 armhf 2.1-3.1+b2 [28.4 kB] Get: 89 http://deb.debian.org/debian bullseye/main armhf libwebp6 armhf 0.6.1-2.1 [226 kB] Get: 90 http://deb.debian.org/debian bullseye/main armhf libtiff5 armhf 4.2.0-1 [271 kB] Get: 91 http://deb.debian.org/debian bullseye/main armhf libxft2 armhf 2.3.2-2 [50.1 kB] Get: 92 http://deb.debian.org/debian bullseye/main armhf x11-common all 1:7.7+22 [252 kB] Get: 93 http://deb.debian.org/debian bullseye/main armhf libxss1 armhf 1:1.2.3-1 [17.2 kB] Get: 94 http://deb.debian.org/debian bullseye/main armhf libtk8.6 armhf 8.6.11-2 [693 kB] Get: 95 http://deb.debian.org/debian bullseye/main armhf libice6 armhf 2:1.0.10-1 [51.9 kB] Get: 96 http://deb.debian.org/debian bullseye/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB] Get: 97 http://deb.debian.org/debian bullseye/main armhf libxt6 armhf 1:1.2.0-1 [161 kB] Get: 98 http://deb.debian.org/debian bullseye/main armhf r-base-core armhf 4.0.4-1 [24.8 MB] Get: 99 http://deb.debian.org/debian bullseye/main armhf libgfortran-10-dev armhf 10.2.1-6 [289 kB] Get: 100 http://deb.debian.org/debian bullseye/main armhf gfortran-10 armhf 10.2.1-6 [7123 kB] Get: 101 http://deb.debian.org/debian bullseye/main armhf gfortran armhf 4:10.2.1-1 [1424 B] Get: 102 http://deb.debian.org/debian bullseye/main armhf libblas-dev armhf 3.9.0-3 [118 kB] Get: 103 http://deb.debian.org/debian bullseye/main armhf liblapack-dev armhf 3.9.0-3 [1719 kB] Get: 104 http://deb.debian.org/debian bullseye/main armhf libncurses6 armhf 6.2+20201114-2 [80.5 kB] Get: 105 http://deb.debian.org/debian bullseye/main armhf libncurses-dev armhf 6.2+20201114-2 [308 kB] Get: 106 http://deb.debian.org/debian bullseye/main armhf libncurses5-dev armhf 6.2+20201114-2 [936 B] Get: 107 http://deb.debian.org/debian bullseye/main armhf libreadline-dev armhf 8.1-1 [135 kB] Get: 108 http://deb.debian.org/debian bullseye/main armhf libjpeg62-turbo-dev armhf 1:2.0.6-4 [242 kB] Get: 109 http://deb.debian.org/debian bullseye/main armhf libjpeg-dev armhf 1:2.0.6-4 [67.8 kB] Get: 110 http://deb.debian.org/debian bullseye/main armhf libpcre2-16-0 armhf 10.36-2 [197 kB] Get: 111 http://deb.debian.org/debian bullseye/main armhf libpcre2-32-0 armhf 10.36-2 [188 kB] Get: 112 http://deb.debian.org/debian bullseye/main armhf libpcre2-posix2 armhf 10.36-2 [48.5 kB] Get: 113 http://deb.debian.org/debian bullseye/main armhf libpcre2-dev armhf 10.36-2 [638 kB] Get: 114 http://deb.debian.org/debian bullseye/main armhf libpcre16-3 armhf 2:8.39-13 [239 kB] Get: 115 http://deb.debian.org/debian bullseye/main armhf libpcre32-3 armhf 2:8.39-13 [231 kB] Get: 116 http://deb.debian.org/debian bullseye/main armhf libpcrecpp0v5 armhf 2:8.39-13 [150 kB] Get: 117 http://deb.debian.org/debian bullseye/main armhf libpcre3-dev armhf 2:8.39-13 [587 kB] Get: 118 http://deb.debian.org/debian bullseye/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [185 kB] Get: 119 http://deb.debian.org/debian bullseye/main armhf libpng-dev armhf 1.6.37-3 [282 kB] Get: 120 http://deb.debian.org/debian bullseye/main armhf libbz2-dev armhf 1.0.8-4 [29.2 kB] Get: 121 http://deb.debian.org/debian bullseye/main armhf liblzma-dev armhf 5.2.5-2 [220 kB] Get: 122 http://deb.debian.org/debian bullseye/main armhf icu-devtools armhf 67.1-7 [180 kB] Get: 123 http://deb.debian.org/debian bullseye/main armhf libicu-dev armhf 67.1-7 [9343 kB] Get: 124 http://deb.debian.org/debian bullseye/main armhf libxmuu1 armhf 2:1.1.2-2+b3 [23.3 kB] Get: 125 http://deb.debian.org/debian bullseye/main armhf xauth armhf 1:1.1-1 [37.7 kB] Get: 126 http://deb.debian.org/debian bullseye/main armhf pkg-config armhf 0.29.2-1 [62.4 kB] Get: 127 http://deb.debian.org/debian bullseye/main armhf r-base-dev all 4.0.4-1 [4484 B] Get: 128 http://deb.debian.org/debian bullseye/main armhf libfile-which-perl all 1.23-1 [16.6 kB] Get: 129 http://deb.debian.org/debian bullseye/main armhf libswitch-perl all 2.17-2.1 [20.0 kB] Get: 130 http://deb.debian.org/debian bullseye/main armhf libencode-locale-perl all 1.05-1.1 [13.2 kB] Get: 131 http://deb.debian.org/debian bullseye/main armhf libtimedate-perl all 2.3300-2 [39.3 kB] Get: 132 http://deb.debian.org/debian bullseye/main armhf libhttp-date-perl all 6.05-1 [10.4 kB] Get: 133 http://deb.debian.org/debian bullseye/main armhf libio-html-perl all 1.004-2 [16.1 kB] Get: 134 http://deb.debian.org/debian bullseye/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB] Get: 135 http://deb.debian.org/debian bullseye/main armhf liburi-perl all 5.08-1 [90.6 kB] Get: 136 http://deb.debian.org/debian bullseye/main armhf libhttp-message-perl all 6.28-1 [79.6 kB] Get: 137 http://deb.debian.org/debian bullseye/main armhf libparams-util-perl armhf 1.102-1+b1 [24.6 kB] Get: 138 http://deb.debian.org/debian bullseye/main armhf libsub-install-perl all 0.928-1.1 [10.8 kB] Get: 139 http://deb.debian.org/debian bullseye/main armhf libdata-optlist-perl all 0.110-1.1 [10.8 kB] Get: 140 http://deb.debian.org/debian bullseye/main armhf libb-hooks-op-check-perl armhf 0.22-1+b3 [11.0 kB] Get: 141 http://deb.debian.org/debian bullseye/main armhf libdynaloader-functions-perl all 0.003-1.1 [12.7 kB] Get: 142 http://deb.debian.org/debian bullseye/main armhf libdevel-callchecker-perl armhf 0.008-1+b2 [15.7 kB] Get: 143 http://deb.debian.org/debian bullseye/main armhf libparams-classify-perl armhf 0.015-1+b3 [24.5 kB] Get: 144 http://deb.debian.org/debian bullseye/main armhf libmodule-runtime-perl all 0.016-1 [19.4 kB] Get: 145 http://deb.debian.org/debian bullseye/main armhf libtry-tiny-perl all 0.30-1 [23.3 kB] Get: 146 http://deb.debian.org/debian bullseye/main armhf libmodule-implementation-perl all 0.09-1.1 [12.4 kB] Get: 147 http://deb.debian.org/debian bullseye/main armhf libpackage-stash-perl all 0.39-1 [21.9 kB] Get: 148 http://deb.debian.org/debian bullseye/main armhf libclass-load-perl all 0.25-1 [16.1 kB] Get: 149 http://deb.debian.org/debian bullseye/main armhf libclass-load-xs-perl armhf 0.10-1+b5 [14.2 kB] Get: 150 http://deb.debian.org/debian bullseye/main armhf libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get: 151 http://deb.debian.org/debian bullseye/main armhf libdevel-globaldestruction-perl all 0.14-1.1 [8312 B] Get: 152 http://deb.debian.org/debian bullseye/main armhf libalgorithm-c3-perl all 0.11-1 [11.7 kB] Get: 153 http://deb.debian.org/debian bullseye/main armhf libclass-c3-perl all 0.35-1 [22.9 kB] Get: 154 http://deb.debian.org/debian bullseye/main armhf libmro-compat-perl all 0.13-1 [12.2 kB] Get: 155 http://deb.debian.org/debian bullseye/main armhf libsub-identify-perl armhf 0.14-1+b3 [11.6 kB] Get: 156 http://deb.debian.org/debian bullseye/main armhf libdevel-overloadinfo-perl all 0.005-1 [7212 B] Get: 157 http://deb.debian.org/debian bullseye/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get: 158 http://deb.debian.org/debian bullseye/main armhf libsub-exporter-perl all 0.987-1 [47.2 kB] Get: 159 http://deb.debian.org/debian bullseye/main armhf libeval-closure-perl all 0.14-1 [11.5 kB] Get: 160 http://deb.debian.org/debian bullseye/main armhf libdist-checkconflicts-perl all 0.11-1.1 [10.2 kB] Get: 161 http://deb.debian.org/debian bullseye/main armhf libmodule-runtime-conflicts-perl all 0.003-1.1 [7156 B] Get: 162 http://deb.debian.org/debian bullseye/main armhf libsub-name-perl armhf 0.26-1+b1 [13.2 kB] Get: 163 http://deb.debian.org/debian bullseye/main armhf libpackage-deprecationmanager-perl all 0.17-1.1 [16.6 kB] Get: 164 http://deb.debian.org/debian bullseye/main armhf libpackage-stash-xs-perl armhf 0.29-1+b2 [18.6 kB] Get: 165 http://deb.debian.org/debian bullseye/main armhf libmoose-perl armhf 2.2014-2 [802 kB] Get: 166 http://deb.debian.org/debian bullseye/main armhf libvariable-magic-perl armhf 0.62-1+b3 [43.0 kB] Get: 167 http://deb.debian.org/debian bullseye/main armhf libb-hooks-endofscope-perl all 0.24-1.1 [18.9 kB] Get: 168 http://deb.debian.org/debian bullseye/main armhf libnamespace-clean-perl all 0.27-1 [17.3 kB] Get: 169 http://deb.debian.org/debian bullseye/main armhf libcurl3-gnutls armhf 7.74.0-1.3+b1 [306 kB] Get: 170 http://deb.debian.org/debian bullseye/main armhf libwww-curl-perl armhf 4.17-7+b1 [59.4 kB] Get: 171 http://deb.debian.org/debian bullseye/main armhf libwww-curl-simple-perl all 0.100191-2 [12.5 kB] Get: 172 http://deb.debian.org/debian bullseye/main armhf dh-r all 20210303 [41.8 kB] Get: 173 http://deb.debian.org/debian bullseye/main armhf libboost1.74-dev armhf 1.74.0-9 [9534 kB] Get: 174 http://deb.debian.org/debian bullseye/main armhf libboost-dev armhf 1.74.0.3 [4548 B] Get: 175 http://deb.debian.org/debian bullseye/main armhf r-bioc-biocgenerics all 0.36.0-1 [648 kB] Get: 176 http://deb.debian.org/debian bullseye/main armhf r-bioc-biobase armhf 2.50.0-1 [2228 kB] Get: 177 http://deb.debian.org/debian bullseye/main armhf r-cran-formatr all 1.7-2 [151 kB] Get: 178 http://deb.debian.org/debian bullseye/main armhf r-cran-lambda.r all 1.2.4-2 [118 kB] Get: 179 http://deb.debian.org/debian bullseye/main armhf r-cran-futile.options all 1.0.1-3 [20.0 kB] Get: 180 http://deb.debian.org/debian bullseye/main armhf r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get: 181 http://deb.debian.org/debian bullseye/main armhf r-cran-snow all 1:0.4.3-2 [109 kB] Get: 182 http://deb.debian.org/debian bullseye/main armhf r-cran-bh all 1.74.0-1 [5196 B] Get: 183 http://deb.debian.org/debian bullseye/main armhf r-bioc-biocparallel armhf 1.24.1-1 [1137 kB] Get: 184 http://deb.debian.org/debian bullseye/main armhf r-bioc-s4vectors armhf 0.28.1-1 [2020 kB] Get: 185 http://deb.debian.org/debian bullseye/main armhf r-bioc-iranges armhf 2.24.1-1 [2194 kB] Get: 186 http://deb.debian.org/debian bullseye/main armhf r-bioc-zlibbioc all 1.36.0+dfsg-1 [8824 B] Get: 187 http://deb.debian.org/debian bullseye/main armhf r-bioc-xvector armhf 0.30.0-1 [613 kB] Get: 188 http://deb.debian.org/debian bullseye/main armhf r-cran-crayon all 1.4.0-1 [143 kB] Get: 189 http://deb.debian.org/debian bullseye/main armhf r-bioc-biostrings armhf 2.58.0-1 [14.2 MB] Get: 190 http://deb.debian.org/debian bullseye/main armhf r-cran-lattice armhf 0.20-41-1+b1 [1162 kB] Get: 191 http://deb.debian.org/debian bullseye/main armhf r-cran-matrix armhf 1.3-2-1 [3541 kB] Get: 192 http://deb.debian.org/debian bullseye/main armhf r-cran-matrixstats armhf 0.58.0-3 [607 kB] Get: 193 http://deb.debian.org/debian bullseye/main armhf r-bioc-matrixgenerics all 1.2.1-4 [288 kB] Get: 194 http://deb.debian.org/debian bullseye/main armhf r-bioc-delayedarray armhf 0.16.1+dfsg-1 [1796 kB] Get: 195 http://deb.debian.org/debian bullseye/main armhf r-cran-bitops armhf 1.0-6-5 [23.4 kB] Get: 196 http://deb.debian.org/debian bullseye/main armhf r-cran-rcurl armhf 1.98-1.2-1+b1 [784 kB] Get: 197 http://deb.debian.org/debian bullseye/main armhf r-bioc-genomeinfodbdata all 1.2.4-1 [10.7 MB] Get: 198 http://deb.debian.org/debian bullseye/main armhf r-bioc-genomeinfodb all 1.26.2-2 [3905 kB] Get: 199 http://deb.debian.org/debian bullseye/main armhf r-bioc-genomicranges armhf 1.42.0+dfsg-1 [1853 kB] Get: 200 http://deb.debian.org/debian bullseye/main armhf r-bioc-summarizedexperiment all 1.20.0+dfsg-1 [1955 kB] Get: 201 http://deb.debian.org/debian bullseye/main armhf r-bioc-rhtslib armhf 1.22.0+dfsg-1 [953 kB] Get: 202 http://deb.debian.org/debian bullseye/main armhf r-bioc-rsamtools armhf 2.6.0-1 [3602 kB] Get: 203 http://deb.debian.org/debian bullseye/main armhf r-bioc-genomicalignments armhf 1.26.0-1 [2192 kB] Get: 204 http://deb.debian.org/debian bullseye/main armhf r-cran-hwriter all 1.3.2-4 [162 kB] Get: 205 http://deb.debian.org/debian bullseye/main armhf r-cran-jpeg armhf 0.1-8.1-1+b1 [29.3 kB] Get: 206 http://deb.debian.org/debian bullseye/main armhf r-cran-png armhf 0.1-7-4 [39.7 kB] Get: 207 http://deb.debian.org/debian bullseye/main armhf r-cran-rcolorbrewer all 1.1-2-3 [54.4 kB] Get: 208 http://deb.debian.org/debian bullseye/main armhf r-cran-latticeextra all 0.6-29-3 [2192 kB] Fetched 153 MB in 22s (7003 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-7_armhf.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../001-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-6_armhf.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../003-libpipeline1_1.5.3-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_armhf.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../005-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:armhf. Preparing to unpack .../006-libreadline8_8.1-1_armhf.deb ... Unpacking libreadline8:armhf (8.1-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../007-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package openssl. Preparing to unpack .../008-openssl_1.1.1k-1_armhf.deb ... Unpacking openssl (1.1.1k-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../009-ca-certificates_20210119_all.deb ... Unpacking ca-certificates (20210119) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../010-libmagic-mgc_1%3a5.39-3_armhf.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../011-libmagic1_1%3a5.39-3_armhf.deb ... Unpacking libmagic1:armhf (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../012-file_1%3a5.39-3_armhf.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../013-gettext-base_0.21-4_armhf.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package ucf. Preparing to unpack .../014-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../015-libsigsegv2_2.13-1_armhf.deb ... Unpacking libsigsegv2:armhf (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.18-5_armhf.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../018-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../019-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../020-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../021-dctrl-tools_2.24-3_armhf.deb ... Unpacking dctrl-tools (2.24-3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../022-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../023-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../024-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../025-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../026-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../027-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../028-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../029-libelf1_0.183-1_armhf.deb ... Unpacking libelf1:armhf (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../030-dwz_0.13+20210201-1_armhf.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:armhf. Preparing to unpack .../031-libicu67_67.1-7_armhf.deb ... Unpacking libicu67:armhf (67.1-7) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../032-libxml2_2.9.10+dfsg-6.7_armhf.deb ... Unpacking libxml2:armhf (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../033-gettext_0.21-4_armhf.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../034-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../035-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../036-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package zip. Preparing to unpack .../037-zip_3.0-12_armhf.deb ... Unpacking zip (3.0-12) ... Selecting previously unselected package unzip. Preparing to unpack .../038-unzip_6.0-26_armhf.deb ... Unpacking unzip (6.0-26) ... Selecting previously unselected package libpaper1:armhf. Preparing to unpack .../039-libpaper1_1.1.28+b1_armhf.deb ... Unpacking libpaper1:armhf (1.1.28+b1) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../040-libpaper-utils_1.1.28+b1_armhf.deb ... Unpacking libpaper-utils (1.1.28+b1) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../041-xdg-utils_1.1.3-4.1_all.deb ... Unpacking xdg-utils (1.1.3-4.1) ... Selecting previously unselected package libblas3:armhf. Preparing to unpack .../042-libblas3_3.9.0-3_armhf.deb ... Unpacking libblas3:armhf (3.9.0-3) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../043-libexpat1_2.2.10-2_armhf.deb ... Unpacking libexpat1:armhf (2.2.10-2) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../044-libbrotli1_1.0.9-2+b2_armhf.deb ... Unpacking libbrotli1:armhf (1.0.9-2+b2) ... Selecting previously unselected package libpng16-16:armhf. Preparing to unpack .../045-libpng16-16_1.6.37-3_armhf.deb ... Unpacking libpng16-16:armhf (1.6.37-3) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../046-libfreetype6_2.10.4+dfsg-1_armhf.deb ... Unpacking libfreetype6:armhf (2.10.4+dfsg-1) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../047-fonts-dejavu-core_2.37-2_all.deb ... Unpacking fonts-dejavu-core (2.37-2) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../048-fontconfig-config_2.13.1-4.2_all.deb ... Unpacking fontconfig-config (2.13.1-4.2) ... Selecting previously unselected package libfontconfig1:armhf. Preparing to unpack .../049-libfontconfig1_2.13.1-4.2_armhf.deb ... Unpacking libfontconfig1:armhf (2.13.1-4.2) ... Selecting previously unselected package libpixman-1-0:armhf. Preparing to unpack .../050-libpixman-1-0_0.40.0-1_armhf.deb ... Unpacking libpixman-1-0:armhf (0.40.0-1) ... Selecting previously unselected package libxau6:armhf. Preparing to unpack .../051-libxau6_1%3a1.0.9-1_armhf.deb ... Unpacking libxau6:armhf (1:1.0.9-1) ... Selecting previously unselected package libmd0:armhf. Preparing to unpack .../052-libmd0_1.0.3-3_armhf.deb ... Unpacking libmd0:armhf (1.0.3-3) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../053-libbsd0_0.11.3-1_armhf.deb ... Unpacking libbsd0:armhf (0.11.3-1) ... Selecting previously unselected package libxdmcp6:armhf. Preparing to unpack .../054-libxdmcp6_1%3a1.1.2-3_armhf.deb ... Unpacking libxdmcp6:armhf (1:1.1.2-3) ... Selecting previously unselected package libxcb1:armhf. Preparing to unpack .../055-libxcb1_1.14-3_armhf.deb ... Unpacking libxcb1:armhf (1.14-3) ... Selecting previously unselected package libx11-data. Preparing to unpack .../056-libx11-data_2%3a1.7.1-1_all.deb ... Unpacking libx11-data (2:1.7.1-1) ... Selecting previously unselected package libx11-6:armhf. Preparing to unpack .../057-libx11-6_2%3a1.7.1-1_armhf.deb ... Unpacking libx11-6:armhf (2:1.7.1-1) ... Selecting previously unselected package libxcb-render0:armhf. Preparing to unpack .../058-libxcb-render0_1.14-3_armhf.deb ... Unpacking libxcb-render0:armhf (1.14-3) ... Selecting previously unselected package libxcb-shm0:armhf. Preparing to unpack .../059-libxcb-shm0_1.14-3_armhf.deb ... Unpacking libxcb-shm0:armhf (1.14-3) ... Selecting previously unselected package libxext6:armhf. Preparing to unpack .../060-libxext6_2%3a1.3.3-1.1_armhf.deb ... Unpacking libxext6:armhf (2:1.3.3-1.1) ... Selecting previously unselected package libxrender1:armhf. Preparing to unpack .../061-libxrender1_1%3a0.9.10-1_armhf.deb ... Unpacking libxrender1:armhf (1:0.9.10-1) ... Selecting previously unselected package libcairo2:armhf. Preparing to unpack .../062-libcairo2_1.16.0-5_armhf.deb ... Unpacking libcairo2:armhf (1.16.0-5) ... Selecting previously unselected package libsasl2-modules-db:armhf. Preparing to unpack .../063-libsasl2-modules-db_2.1.27+dfsg-2.1_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:armhf. Preparing to unpack .../064-libsasl2-2_2.1.27+dfsg-2.1_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:armhf. Preparing to unpack .../065-libldap-2.4-2_2.4.57+dfsg-3_armhf.deb ... Unpacking libldap-2.4-2:armhf (2.4.57+dfsg-3) ... Selecting previously unselected package libnghttp2-14:armhf. Preparing to unpack .../066-libnghttp2-14_1.43.0-1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.43.0-1) ... Selecting previously unselected package libpsl5:armhf. Preparing to unpack .../067-libpsl5_0.21.0-1.2_armhf.deb ... Unpacking libpsl5:armhf (0.21.0-1.2) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../068-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:armhf. Preparing to unpack .../069-libssh2-1_1.9.0-2_armhf.deb ... Unpacking libssh2-1:armhf (1.9.0-2) ... Selecting previously unselected package libcurl4:armhf. Preparing to unpack .../070-libcurl4_7.74.0-1.3+b1_armhf.deb ... Unpacking libcurl4:armhf (7.74.0-1.3+b1) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../071-libglib2.0-0_2.66.8-1_armhf.deb ... Unpacking libglib2.0-0:armhf (2.66.8-1) ... Selecting previously unselected package libjpeg62-turbo:armhf. Preparing to unpack .../072-libjpeg62-turbo_1%3a2.0.6-4_armhf.deb ... Unpacking libjpeg62-turbo:armhf (1:2.0.6-4) ... Selecting previously unselected package libgfortran5:armhf. Preparing to unpack .../073-libgfortran5_10.2.1-6_armhf.deb ... Unpacking libgfortran5:armhf (10.2.1-6) ... Selecting previously unselected package liblapack3:armhf. Preparing to unpack .../074-liblapack3_3.9.0-3_armhf.deb ... Unpacking liblapack3:armhf (3.9.0-3) ... Selecting previously unselected package fontconfig. 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Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpaper1:armhf (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up libxrender1:armhf (1:0.9.10-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl (0.015-1+b3) ... Setting up libxext6:armhf (2:1.3.3-1.1) ... Setting up libwww-curl-perl (4.17-7+b1) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:10.2.1-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up dh-autoreconf (20) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdist-checkconflicts-perl (0.11-1.1) ... Setting up libxt6:armhf (1:1.2.0-1) ... Setting up xauth (1:1.1-1) ... Setting up libxss1:armhf (1:1.2.3-1) ... Setting up libfontconfig1:armhf (2.13.1-4.2) ... Setting up fontconfig (2.13.1-4.2) ... Regenerating fonts cache... done. Setting up libxft2:armhf (2.3.2-2) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libtk8.6:armhf (8.6.11-2) ... Setting up libpango-1.0-0:armhf (1.46.2-3) ... Setting up debhelper (13.3.4) ... Setting up libmodule-runtime-conflicts-perl (0.003-1.1) ... Setting up libcairo2:armhf (1.16.0-5) ... Setting up libclass-load-perl (0.25-1) ... Setting up libpackage-deprecationmanager-perl (0.17-1.1) ... Setting up libdevel-overloadinfo-perl (0.005-1) ... Setting up libclass-load-xs-perl (0.10-1+b5) ... Setting up libpangoft2-1.0-0:armhf (1.46.2-3) ... Setting up libb-hooks-endofscope-perl (0.24-1.1) ... Setting up libpangocairo-1.0-0:armhf (1.46.2-3) ... Setting up libmoose-perl (2.2014-2) ... Setting up r-base-core (4.0.4-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.4.0-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up r-cran-futile.options (1.0.1-3) ... Setting up r-cran-lattice (0.20-41-1+b1) ... Setting up r-cran-formatr (1.7-2) ... Setting up r-cran-jpeg (0.1-8.1-1+b1) ... Setting up r-bioc-genomeinfodbdata (1.2.4-1) ... Setting up r-bioc-biocgenerics (0.36.0-1) ... Setting up r-cran-matrixstats (0.58.0-3) ... Setting up r-base-dev (4.0.4-1) ... Setting up libwww-curl-simple-perl (0.100191-2) ... Setting up r-bioc-matrixgenerics (1.2.1-4) ... Setting up r-cran-lambda.r (1.2.4-2) ... Setting up r-cran-snow (1:0.4.3-2) ... Setting up r-cran-bitops (1.0-6-5) ... Setting up r-bioc-zlibbioc (1.36.0+dfsg-1) ... Setting up r-cran-png (0.1-7-4) ... Setting up r-bioc-biobase (2.50.0-1) ... Setting up r-cran-hwriter (1.3.2-4) ... Setting up r-cran-rcolorbrewer (1.1-2-3) ... Setting up r-bioc-s4vectors (0.28.1-1) ... Setting up r-cran-futile.logger (1.4.3-4) ... Setting up r-cran-matrix (1.3-2-1) ... Setting up r-bioc-iranges (2.24.1-1) ... Setting up dh-r (20210303) ... Setting up r-cran-rcurl (1.98-1.2-1+b1) ... Setting up r-bioc-delayedarray (0.16.1+dfsg-1) ... Setting up r-bioc-biocparallel (1.24.1-1) ... Setting up r-bioc-rhtslib (1.22.0+dfsg-1) ... Setting up r-cran-latticeextra (0.6-29-3) ... Setting up r-bioc-genomeinfodb (1.26.2-2) ... Setting up r-bioc-xvector (0.30.0-1) ... Setting up r-bioc-genomicranges (1.42.0+dfsg-1) ... Setting up r-bioc-biostrings (2.58.0-1) ... Setting up r-bioc-rsamtools (2.6.0-1) ... Setting up r-bioc-summarizedexperiment (1.20.0+dfsg-1) ... Setting up r-bioc-genomicalignments (1.26.0-1) ... Processing triggers for libc-bin (2.31-12) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/r-bioc-shortread-1.48.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-shortread_1.48.0-2_source.changes dpkg-buildpackage: info: source package r-bioc-shortread dpkg-buildpackage: info: source version 1.48.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install -O--buildsystem=R I: R packages needed for DEP8: runit I: R Package: ShortRead Version: 1.48.0 I: Building using R version 4.0.4-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Sun, 07 Feb 2021 12:28:32 +0100 mkdir -p /build/r-bioc-shortread-1.48.0/debian/r-bioc-shortread/usr/lib/R/site-library R CMD INSTALL -l /build/r-bioc-shortread-1.48.0/debian/r-bioc-shortread/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 07 Feb 2021 12:28:32 +0100'" * installing *source* package 'ShortRead' ... ** using staged installation checking for gcc... gcc -std=gnu99 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -std=gnu99 accepts -g... yes checking for gcc -std=gnu99 option to accept ISO C89... none needed checking for gzeof in -lz... yes checking how to run the C preprocessor... gcc -std=gnu99 -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking size of unsigned long... 4 configure: creating ./config.status config.status: creating src/Makevars ** libs make[1]: Entering directory '/build/r-bioc-shortread-1.48.0/src' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-V9EyJp/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Biostrings_stubs.c -o Biostrings_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-V9EyJp/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c IRanges_stubs.c -o IRanges_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-V9EyJp/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_ShortRead.c -o R_init_ShortRead.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-V9EyJp/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-V9EyJp/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XVector_stubs.c -o XVector_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-V9EyJp/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c alphabet.c -o alphabet.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-V9EyJp/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c count.c -o count.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-V9EyJp/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io.c -o io.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-V9EyJp/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io_bowtie.c -o io_bowtie.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-V9EyJp/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io_soap.c -o io_soap.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_LIBZ=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DSIZEOF_UNSIGNED_LONG=4 -fpic -g -O2 -ffile-prefix-map=/build/r-base-V9EyJp/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readBfaToc.cc -o readBfaToc.o readBfaToc.cc: In function 'SEXPREC* readBfaToc(SEXP)': readBfaToc.cc:35:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 35 | (void) fread( seq_name, sizeof(char), name_len, fp ); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readBfaToc.cc:36:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 36 | (void) fread( &seq_ori_len, sizeof(int), 1, fp ); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readBfaToc.cc:37:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 37 | (void) fread( &seq_len, sizeof(int), 1, fp ); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_LIBZ=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DSIZEOF_UNSIGNED_LONG=4 -fpic -g -O2 -ffile-prefix-map=/build/r-base-V9EyJp/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read_maq_map.cc -o read_maq_map.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-V9EyJp/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sampler.c -o sampler.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-V9EyJp/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c trim.c -o trim.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-V9EyJp/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/zlibbioc/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-V9EyJp/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xsnap.c -o xsnap.o g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-z,relro -o ShortRead.so Biostrings_stubs.o IRanges_stubs.o R_init_ShortRead.o S4Vectors_stubs.o XVector_stubs.o alphabet.o count.o io.o io_bowtie.o io_soap.o readBfaToc.o read_maq_map.o sampler.o trim.o util.o xsnap.o -lz -fopenmp -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/r-bioc-shortread-1.48.0/src' make[1]: Entering directory '/build/r-bioc-shortread-1.48.0/src' make[1]: Leaving directory '/build/r-bioc-shortread-1.48.0/src' installing to /build/r-bioc-shortread-1.48.0/debian/r-bioc-shortread/usr/lib/R/site-library/00LOCK-r-bioc-shortread-1.48.0/00new/ShortRead/libs ** R ** inst ** byte-compile and prepare package for lazy loading code for methods in class "ShortReadFile" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "FastqFileReader" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "QAData" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Snapshot" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "SpTrellis" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "FastqSampler" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "FastqStreamer" was not checked for suspicious field assignments (recommended package 'codetools' not available?) ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ShortRead) I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.23.3) I: Using r-bioc-biocparallel for Depends:BiocParallel I: Using r-bioc-biostrings for Depends:Biostrings (>= 2.47.6) I: Using r-bioc-rsamtools for Depends:Rsamtools (>= 1.31.2) I: Using r-bioc-genomicalignments for Depends:GenomicAlignments (>= 1.15.6) I: Using r-cran-runit for Recommends:runit I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-bioc-biomart for Suggests:biomaRt I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures W: Cannot find a debian package for Suggests:yeastNagalakshmi I: Using r-bioc-biobase for Imports:Biobase I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.17.25) I: Using r-bioc-iranges for Imports:IRanges (>= 2.13.12) I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb (>= 1.15.2) I: Using r-bioc-genomicranges for Imports:GenomicRanges (>= 1.31.8) I: Using r-cran-hwriter for Imports:hwriter I: Using r-bioc-zlibbioc for Imports:zlibbioc I: Using r-cran-lattice for Imports:lattice I: Using r-cran-latticeextra for Imports:latticeExtra I: Using r-bioc-s4vectors for LinkingTo:S4Vectors I: Using r-bioc-iranges for LinkingTo:IRanges I: Using r-bioc-xvector for LinkingTo:XVector I: Using r-bioc-biostrings for LinkingTo:Biostrings I: Using r-bioc-rhtslib for LinkingTo:Rhtslib I: Using r-bioc-zlibbioc for LinkingTo:zlibbioc I: BioConductor API version: r-api-bioc-3.12 I: Use r-bioc-shortread as Debian binary package for variables substitution debian/rules override_dh_install make[1]: Entering directory '/build/r-bioc-shortread-1.48.0' dh_install find debian -name test_readPrb.R -delete echo "***** DELETED test_readPrb.R ********" ***** DELETED test_readPrb.R ******** make[1]: Leaving directory '/build/r-bioc-shortread-1.48.0' dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-shortread-dbgsym' in '../r-bioc-shortread-dbgsym_1.48.0-2_armhf.deb'. dpkg-deb: building package 'r-bioc-shortread' in '../r-bioc-shortread_1.48.0-2_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../r-bioc-shortread_1.48.0-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/6770 and its subdirectories I: Current time: Fri Jul 23 07:18:40 -12 2021 I: pbuilder-time-stamp: 1627067920 Fri Jul 23 19:19:31 UTC 2021 I: 1st build successful. Starting 2nd build on remote node jtx1c-armhf-rb.debian.net. Fri Jul 23 19:19:31 UTC 2021 I: Preparing to do remote build '2' on jtx1c-armhf-rb.debian.net. Fri Jul 23 19:25:39 UTC 2021 I: Deleting $TMPDIR on jtx1c-armhf-rb.debian.net. Fri Jul 23 19:25:43 UTC 2021 I: r-bioc-shortread_1.48.0-2_armhf.changes: Format: 1.8 Date: Sun, 07 Feb 2021 12:28:32 +0100 Source: r-bioc-shortread Binary: r-bioc-shortread r-bioc-shortread-dbgsym Architecture: armhf Version: 1.48.0-2 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Andreas Tille Description: r-bioc-shortread - GNU R classes and methods for high-throughput short-read sequenci Closes: 980082 Changes: r-bioc-shortread (1.48.0-2) unstable; urgency=medium . * Exclude failing test on non-Intel architectures Closes: #980082 Checksums-Sha1: 8c9503e48769f8bc799b3357fad3812563abce92 156672 r-bioc-shortread-dbgsym_1.48.0-2_armhf.deb 31eeeccecc568d79a2510848f261d453a9fd6d43 10559 r-bioc-shortread_1.48.0-2_armhf.buildinfo f400441acbab870bade87c1928cf9ca81d227534 5060008 r-bioc-shortread_1.48.0-2_armhf.deb Checksums-Sha256: 51a5a8b9017d3b0e58de4b5a6385b6e267693f670d3b4df070280872610b76a9 156672 r-bioc-shortread-dbgsym_1.48.0-2_armhf.deb cc266a06ff2c3c86be2a127b306cce119ef0f49f70967c3c0ef404e08e8da612 10559 r-bioc-shortread_1.48.0-2_armhf.buildinfo 6fde5b9c09eac7c27b36940ce3605cc8676f446bfc66b18835a7f60254eef1d4 5060008 r-bioc-shortread_1.48.0-2_armhf.deb Files: 3f7e294262f10857947f94f062d9ccf6 156672 debug optional r-bioc-shortread-dbgsym_1.48.0-2_armhf.deb 14a86cd487c67975eafb96076fe213d4 10559 gnu-r optional r-bioc-shortread_1.48.0-2_armhf.buildinfo 665e8d8adb928fee88f665f87a92b42b 5060008 gnu-r optional r-bioc-shortread_1.48.0-2_armhf.deb Fri Jul 23 19:25:44 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.vWeIrjhZFd/r-bioc-shortread_1.48.0-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.vWeIrjhZFd/r-bioc-shortread_1.48.0-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.vWeIrjhZFd/r-bioc-shortread_1.48.0-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.vWeIrjhZFd/b1/r-bioc-shortread_1.48.0-2_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.vWeIrjhZFd/b2/r-bioc-shortread_1.48.0-2_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.343s) 0.343s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.069s) 0.068s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Fri Jul 23 19:25:46 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Fri Jul 23 19:25:46 UTC 2021 I: r-bioc-shortread from bullseye built successfully and reproducibly on armhf. Fri Jul 23 19:25:48 UTC 2021 I: Submitting .buildinfo files to external archives: Fri Jul 23 19:25:48 UTC 2021 I: Submitting 12K b1/r-bioc-shortread_1.48.0-2_armhf.buildinfo.asc Fri Jul 23 19:25:49 UTC 2021 I: Submitting 12K b2/r-bioc-shortread_1.48.0-2_armhf.buildinfo.asc Fri Jul 23 19:25:50 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jul 23 19:25:50 UTC 2021 I: Done submitting .buildinfo files. Fri Jul 23 19:25:50 UTC 2021 I: Removing signed r-bioc-shortread_1.48.0-2_armhf.buildinfo.asc files: removed './b1/r-bioc-shortread_1.48.0-2_armhf.buildinfo.asc' removed './b2/r-bioc-shortread_1.48.0-2_armhf.buildinfo.asc'