Mon Jul 12 22:46:07 UTC 2021 I: starting to build molmodel/bullseye/armhf on jenkins on '2021-07-12 22:45' Mon Jul 12 22:46:07 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_16/7021/console.log Mon Jul 12 22:46:07 UTC 2021 I: Downloading source for bullseye/molmodel=3.0~svn842-2 --2021-07-12 22:46:07-- http://cdn-fastly.deb.debian.org/debian/pool/main/m/molmodel/molmodel_3.0~svn842-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2102 (2.1K) Saving to: ‘molmodel_3.0~svn842-2.dsc’ 0K .. 100% 4.57M=0s 2021-07-12 22:46:07 (4.57 MB/s) - ‘molmodel_3.0~svn842-2.dsc’ saved [2102/2102] Mon Jul 12 22:46:07 UTC 2021 I: molmodel_3.0~svn842-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: molmodel Binary: libsimtkmolmodel-dev, libsimtkmolmodel3.0 Architecture: any Version: 3.0~svn842-2 Maintainer: Debichem Team Uploaders: Andrius Merkys , Homepage: https://simtk.org/projects/molmodel Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/debichem-team/molmodel Vcs-Git: https://salsa.debian.org/debichem-team/molmodel.git Build-Depends: cmake, debhelper-compat (= 13), libmmdb2-dev, libsimbody-dev Package-List: libsimtkmolmodel-dev deb libdevel optional arch=any libsimtkmolmodel3.0 deb libs optional arch=any Checksums-Sha1: 104f117c3346b127a5e82fb18402d040f683f28b 8559120 molmodel_3.0~svn842.orig.tar.xz 82df865b6fc9104a5dfc05a21fcfe0af142e9695 7784 molmodel_3.0~svn842-2.debian.tar.xz Checksums-Sha256: ae9a9a0528a3a0ba53f8fdd7b51f8e66e18ce7e2fdd1764e38764f813ad033b5 8559120 molmodel_3.0~svn842.orig.tar.xz 252308ff9362e589f65379d561aeaa43571da202069a8b320589938798e2a53e 7784 molmodel_3.0~svn842-2.debian.tar.xz Files: 6f64ededc4bc934a924c615fbe341ae6 8559120 molmodel_3.0~svn842.orig.tar.xz d73170b19b1c3f6b5203f9461bf96b3c 7784 molmodel_3.0~svn842-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAl7q7SESHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHMe8QAKSkaKMVjkv2Qs5NlusAaAhN9NRYkd8W X3YZHfS7e+D1SA2ua0FDFyxfi1tICSPvZgQnTbPsRC0SUInNhfoWLDPqG+czHm/E Xhgvd2DqLos0aCaKOzzTRFJjDLVWkepAWbIHaWBN3XuD+AeXJP7O8WFpV5ntoE2C tT66CqiH9f7CWwGyw28s6BP6cMGxwaChxW+fMayT4tV8LgTYWFHdgHaqrJhrB9Wc GQGrxhYxGTRxL8r4JScFim5LvGO5sYXD/nDdJiWt3Vbb/dVb06+I3j/4jpMT85wx GAtxMcyAGGo+g2NCJLXcwpd+tbWr7cCfx/3FBgRNXmfVTaw79Ttz4hSp3/IPL+5x Y5Lape9ORgTdv0bOh6XHgmSWow5amDAwgGVfVHCDPB4YYStzD0Z6QPI/tTsEzPJg gn9XZl9q0JW7Wg3i9PYBrX5w4KCQkokjIcSfgeW5YmqOfEhGhBBpZV8xA7ilprIX v7ErhYsTamWwQW4J5xCUcDQMO2fjAs73dLLG4vkdNKG+rxZnvrsEcEbDYl3GUvTf Tihe9gHjgljiRH82eEFicdJ6Qeq0zyLWndP3MexP8AWvDltoYdEhE0HtV/6sutAo 2ZnCJCW8OY/L52BXTkuksCq9u2U2ffyy1o9et0UpwQq8FT3YaszQGB056sHSxc2k WMwMemTnu6ot =q6T0 -----END PGP SIGNATURE----- Mon Jul 12 22:46:07 UTC 2021 I: Checking whether the package is not for us Mon Jul 12 22:46:07 UTC 2021 I: Starting 1st build on remote node virt32b-armhf-rb.debian.net. Mon Jul 12 22:46:07 UTC 2021 I: Preparing to do remote build '1' on virt32b-armhf-rb.debian.net. Mon Jul 12 23:06:43 UTC 2021 I: Deleting $TMPDIR on virt32b-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Jul 12 10:46:14 -12 2021 I: pbuilder-time-stamp: 1626129974 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [molmodel_3.0~svn842-2.dsc] I: copying [./molmodel_3.0~svn842.orig.tar.xz] I: copying [./molmodel_3.0~svn842-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.CcPB6ki4/trustedkeys.kbx': General error gpgv: Signature made Wed Jun 17 16:27:13 2020 -12 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./molmodel_3.0~svn842-2.dsc dpkg-source: info: extracting molmodel in molmodel-3.0~svn842 dpkg-source: info: unpacking molmodel_3.0~svn842.orig.tar.xz dpkg-source: info: unpacking molmodel_3.0~svn842-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove-failing-tests.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3804/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' DISTRIBUTION='' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='7100c26f5c5d48f9bff06fe12d9a5b6d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3804' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.dTBFf4iJnp/pbuilderrc_6NEO --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.dTBFf4iJnp/b1 --logfile b1/build.log molmodel_3.0~svn842-2.dsc' SUDO_GID='112' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:8000/' I: uname -a Linux virt32b 5.10.0-7-armmp-lpae #1 SMP Debian 5.10.40-1 (2021-05-28) armv7l GNU/Linux I: ls -l /bin total 3580 -rwxr-xr-x 1 root root 816764 Jun 21 14:26 bash -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash -rwxr-xr-x 1 root root 75880 Sep 22 2020 date -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd -rwxr-xr-x 1 root root 59912 Sep 22 2020 df -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir -rwxr-xr-x 1 root root 55012 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 22496 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 47492 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln -rwxr-xr-x 1 root root 35068 Feb 7 2020 login -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls -rwxr-xr-x 1 root root 99940 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 34408 Feb 7 02:38 more -rwsr-xr-x 1 root root 34400 Feb 7 02:38 mount -rwxr-xr-x 1 root root 9824 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 8 21:26 sh -> dash -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty -rwsr-xr-x 1 root root 46704 Feb 7 02:38 su -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync -rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch -rwxr-xr-x 1 root root 22496 Sep 22 2020 true -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 22108 Feb 7 02:38 umount -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir -rwxr-xr-x 1 root root 38512 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/3804/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cmake, debhelper-compat (= 13), libmmdb2-dev, libsimbody-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libmmdb2-dev; however: Package libmmdb2-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimbody-dev; however: Package libsimbody-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} freeglut3{a} freeglut3-dev{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbsd0{a} libcurl4{a} libdebhelper-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgbm1{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dev{a} libgl1-mesa-dri{a} libglapi-mesa{a} libgles-dev{a} libgles1{a} libgles2{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglvnd-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libice-dev{a} libice6{a} libicu67{a} libjsoncpp24{a} liblapack-dev{a} liblapack3{a} libldap-2.4-2{a} libllvm11{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmmdb2-0{a} libmmdb2-dev{a} libncurses6{a} libnghttp2-14{a} libopengl-dev{a} libopengl0{a} libpipeline1{a} libprocps8{a} libpsl5{a} libpthread-stubs0-dev{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsigsegv2{a} libsimbody-dev{a} libsimbody3.6{a} libsm-dev{a} libsm6{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libvulkan1{a} libwayland-client0{a} libwayland-server0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes-dev{a} libxfixes3{a} libxi-dev{a} libxi6{a} libxml2{a} libxmu-dev{a} libxmu-headers{a} libxmu6{a} libxshmfence1{a} libxt-dev{a} libxt6{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} x11-common{a} x11proto-dev{a} x11proto-input-dev{a} x11proto-xext-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx mesa-vulkan-drivers psmisc publicsuffix wget 0 packages upgraded, 139 newly installed, 0 to remove and 0 not upgraded. Need to get 70.4 MB of archives. After unpacking 261 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main armhf bsdextrautils armhf 2.36.1-7 [138 kB] Get: 2 http://deb.debian.org/debian bullseye/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 3 http://deb.debian.org/debian bullseye/main armhf groff-base armhf 1.22.4-6 [847 kB] Get: 4 http://deb.debian.org/debian bullseye/main armhf libpipeline1 armhf 1.5.3-1 [30.1 kB] Get: 5 http://deb.debian.org/debian bullseye/main armhf man-db armhf 2.9.4-2 [1319 kB] Get: 6 http://deb.debian.org/debian bullseye/main armhf libncurses6 armhf 6.2+20201114-2 [80.5 kB] Get: 7 http://deb.debian.org/debian bullseye/main armhf libprocps8 armhf 2:3.3.17-5 [60.7 kB] Get: 8 http://deb.debian.org/debian bullseye/main armhf procps armhf 2:3.3.17-5 [492 kB] Get: 9 http://deb.debian.org/debian bullseye/main armhf sensible-utils all 0.0.14 [14.8 kB] Get: 10 http://deb.debian.org/debian bullseye/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB] Get: 11 http://deb.debian.org/debian bullseye/main armhf libmagic1 armhf 1:5.39-3 [117 kB] Get: 12 http://deb.debian.org/debian bullseye/main armhf file armhf 1:5.39-3 [68.1 kB] Get: 13 http://deb.debian.org/debian bullseye/main armhf gettext-base armhf 0.21-4 [171 kB] Get: 14 http://deb.debian.org/debian bullseye/main armhf libsigsegv2 armhf 2.13-1 [34.0 kB] Get: 15 http://deb.debian.org/debian bullseye/main armhf m4 armhf 1.4.18-5 [192 kB] Get: 16 http://deb.debian.org/debian bullseye/main armhf autoconf all 2.69-14 [313 kB] Get: 17 http://deb.debian.org/debian bullseye/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 18 http://deb.debian.org/debian bullseye/main armhf automake all 1:1.16.3-2 [814 kB] Get: 19 http://deb.debian.org/debian bullseye/main armhf autopoint all 0.21-4 [510 kB] Get: 20 http://deb.debian.org/debian bullseye/main armhf cmake-data all 3.18.4-2 [1725 kB] Get: 21 http://deb.debian.org/debian bullseye/main armhf libicu67 armhf 67.1-7 [8319 kB] Get: 22 http://deb.debian.org/debian bullseye/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [602 kB] Get: 23 http://deb.debian.org/debian bullseye/main armhf libarchive13 armhf 3.4.3-2+b1 [304 kB] Get: 24 http://deb.debian.org/debian bullseye/main armhf libbrotli1 armhf 1.0.9-2+b2 [262 kB] Get: 25 http://deb.debian.org/debian bullseye/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-2.1 [67.6 kB] Get: 26 http://deb.debian.org/debian bullseye/main armhf libsasl2-2 armhf 2.1.27+dfsg-2.1 [99.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main armhf libldap-2.4-2 armhf 2.4.57+dfsg-3 [210 kB] Get: 28 http://deb.debian.org/debian bullseye/main armhf libnghttp2-14 armhf 1.43.0-1 [65.6 kB] Get: 29 http://deb.debian.org/debian bullseye/main armhf libpsl5 armhf 0.21.0-1.2 [56.1 kB] Get: 30 http://deb.debian.org/debian bullseye/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 31 http://deb.debian.org/debian bullseye/main armhf libssh2-1 armhf 1.9.0-2 [143 kB] Get: 32 http://deb.debian.org/debian bullseye/main armhf libcurl4 armhf 7.74.0-1.3+b1 [310 kB] Get: 33 http://deb.debian.org/debian bullseye/main armhf libexpat1 armhf 2.2.10-2 [76.3 kB] Get: 34 http://deb.debian.org/debian bullseye/main armhf libjsoncpp24 armhf 1.9.4-4 [68.5 kB] Get: 35 http://deb.debian.org/debian bullseye/main armhf librhash0 armhf 1.4.1-2 [144 kB] Get: 36 http://deb.debian.org/debian bullseye/main armhf libuv1 armhf 1.40.0-2 [120 kB] Get: 37 http://deb.debian.org/debian bullseye/main armhf cmake armhf 3.18.4-2 [3534 kB] Get: 38 http://deb.debian.org/debian bullseye/main armhf libdebhelper-perl all 13.3.4 [189 kB] Get: 39 http://deb.debian.org/debian bullseye/main armhf libtool all 2.4.6-15 [513 kB] Get: 40 http://deb.debian.org/debian bullseye/main armhf dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian bullseye/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian bullseye/main armhf libsub-override-perl all 0.09-2 [10.2 kB] Get: 43 http://deb.debian.org/debian bullseye/main armhf libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 44 http://deb.debian.org/debian bullseye/main armhf dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 45 http://deb.debian.org/debian bullseye/main armhf libelf1 armhf 0.183-1 [161 kB] Get: 46 http://deb.debian.org/debian bullseye/main armhf dwz armhf 0.13+20210201-1 [179 kB] Get: 47 http://deb.debian.org/debian bullseye/main armhf gettext armhf 0.21-4 [1243 kB] Get: 48 http://deb.debian.org/debian bullseye/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 49 http://deb.debian.org/debian bullseye/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian bullseye/main armhf debhelper all 13.3.4 [1049 kB] Get: 51 http://deb.debian.org/debian bullseye/main armhf libglvnd0 armhf 1.3.2-1 [51.8 kB] Get: 52 http://deb.debian.org/debian bullseye/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 53 http://deb.debian.org/debian bullseye/main armhf libmd0 armhf 1.0.3-3 [27.4 kB] Get: 54 http://deb.debian.org/debian bullseye/main armhf libbsd0 armhf 0.11.3-1 [103 kB] Get: 55 http://deb.debian.org/debian bullseye/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 56 http://deb.debian.org/debian bullseye/main armhf libxcb1 armhf 1.14-3 [136 kB] Get: 57 http://deb.debian.org/debian bullseye/main armhf libx11-data all 2:1.7.1-1 [310 kB] Get: 58 http://deb.debian.org/debian bullseye/main armhf libx11-6 armhf 2:1.7.1-1 [712 kB] Get: 59 http://deb.debian.org/debian bullseye/main armhf libdrm-common all 2.4.104-1 [14.9 kB] Get: 60 http://deb.debian.org/debian bullseye/main armhf libdrm2 armhf 2.4.104-1 [37.7 kB] Get: 61 http://deb.debian.org/debian bullseye/main armhf libglapi-mesa armhf 20.3.4-1 [80.2 kB] Get: 62 http://deb.debian.org/debian bullseye/main armhf libx11-xcb1 armhf 2:1.7.1-1 [203 kB] Get: 63 http://deb.debian.org/debian bullseye/main armhf libxcb-dri2-0 armhf 1.14-3 [103 kB] Get: 64 http://deb.debian.org/debian bullseye/main armhf libxcb-dri3-0 armhf 1.14-3 [102 kB] Get: 65 http://deb.debian.org/debian bullseye/main armhf libxcb-glx0 armhf 1.14-3 [116 kB] Get: 66 http://deb.debian.org/debian bullseye/main armhf libxcb-present0 armhf 1.14-3 [101 kB] Get: 67 http://deb.debian.org/debian bullseye/main armhf libxcb-shm0 armhf 1.14-3 [101 kB] Get: 68 http://deb.debian.org/debian bullseye/main armhf libxcb-sync1 armhf 1.14-3 [104 kB] Get: 69 http://deb.debian.org/debian bullseye/main armhf libxcb-xfixes0 armhf 1.14-3 [105 kB] Get: 70 http://deb.debian.org/debian bullseye/main armhf libxdamage1 armhf 1:1.1.5-2 [15.1 kB] Get: 71 http://deb.debian.org/debian bullseye/main armhf libxext6 armhf 2:1.3.3-1.1 [47.8 kB] Get: 72 http://deb.debian.org/debian bullseye/main armhf libxfixes3 armhf 1:5.0.3-2 [20.6 kB] Get: 73 http://deb.debian.org/debian bullseye/main armhf libxshmfence1 armhf 1.3-1 [8592 B] Get: 74 http://deb.debian.org/debian bullseye/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.2 kB] Get: 75 http://deb.debian.org/debian bullseye/main armhf libdrm-amdgpu1 armhf 2.4.104-1 [27.1 kB] Get: 76 http://deb.debian.org/debian bullseye/main armhf libdrm-nouveau2 armhf 2.4.104-1 [24.6 kB] Get: 77 http://deb.debian.org/debian bullseye/main armhf libdrm-radeon1 armhf 2.4.104-1 [27.6 kB] Get: 78 http://deb.debian.org/debian bullseye/main armhf libedit2 armhf 3.1-20191231-2+b1 [81.1 kB] Get: 79 http://deb.debian.org/debian bullseye/main armhf libz3-4 armhf 4.8.10-1 [5959 kB] Get: 80 http://deb.debian.org/debian bullseye/main armhf libllvm11 armhf 1:11.0.1-2 [15.4 MB] Get: 81 http://deb.debian.org/debian bullseye/main armhf libsensors-config all 1:3.6.0-7 [32.3 kB] Get: 82 http://deb.debian.org/debian bullseye/main armhf libsensors5 armhf 1:3.6.0-7 [49.6 kB] Get: 83 http://deb.debian.org/debian bullseye/main armhf libvulkan1 armhf 1.2.162.0-1 [84.3 kB] Get: 84 http://deb.debian.org/debian bullseye/main armhf libgl1-mesa-dri armhf 20.3.4-1 [6037 kB] Get: 85 http://deb.debian.org/debian bullseye/main armhf libglx-mesa0 armhf 20.3.4-1 [167 kB] Get: 86 http://deb.debian.org/debian bullseye/main armhf libglx0 armhf 1.3.2-1 [32.8 kB] Get: 87 http://deb.debian.org/debian bullseye/main armhf libgl1 armhf 1.3.2-1 [94.3 kB] Get: 88 http://deb.debian.org/debian bullseye/main armhf libxi6 armhf 2:1.7.10-1 [78.5 kB] Get: 89 http://deb.debian.org/debian bullseye/main armhf freeglut3 armhf 2.8.1-6 [112 kB] Get: 90 http://deb.debian.org/debian bullseye/main armhf xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 91 http://deb.debian.org/debian bullseye/main armhf x11proto-dev all 2020.1-1 [594 kB] Get: 92 http://deb.debian.org/debian bullseye/main armhf libxau-dev armhf 1:1.0.9-1 [22.4 kB] Get: 93 http://deb.debian.org/debian bullseye/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.7 kB] Get: 94 http://deb.debian.org/debian bullseye/main armhf xtrans-dev all 1.4.0-1 [98.7 kB] Get: 95 http://deb.debian.org/debian bullseye/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B] Get: 96 http://deb.debian.org/debian bullseye/main armhf libxcb1-dev armhf 1.14-3 [175 kB] Get: 97 http://deb.debian.org/debian bullseye/main armhf libx11-dev armhf 2:1.7.1-1 [787 kB] Get: 98 http://deb.debian.org/debian bullseye/main armhf libglx-dev armhf 1.3.2-1 [16.3 kB] Get: 99 http://deb.debian.org/debian bullseye/main armhf libgl-dev armhf 1.3.2-1 [100 kB] Get: 100 http://deb.debian.org/debian bullseye/main armhf libwayland-server0 armhf 1.18.0-2~exp1.1 [28.1 kB] Get: 101 http://deb.debian.org/debian bullseye/main armhf libgbm1 armhf 20.3.4-1 [70.1 kB] Get: 102 http://deb.debian.org/debian bullseye/main armhf libwayland-client0 armhf 1.18.0-2~exp1.1 [22.1 kB] Get: 103 http://deb.debian.org/debian bullseye/main armhf libegl-mesa0 armhf 20.3.4-1 [123 kB] Get: 104 http://deb.debian.org/debian bullseye/main armhf libegl1 armhf 1.3.2-1 [29.5 kB] Get: 105 http://deb.debian.org/debian bullseye/main armhf libegl-dev armhf 1.3.2-1 [19.6 kB] Get: 106 http://deb.debian.org/debian bullseye/main armhf libgles1 armhf 1.3.2-1 [12.6 kB] Get: 107 http://deb.debian.org/debian bullseye/main armhf libgles2 armhf 1.3.2-1 [18.2 kB] Get: 108 http://deb.debian.org/debian bullseye/main armhf libgles-dev armhf 1.3.2-1 [50.3 kB] Get: 109 http://deb.debian.org/debian bullseye/main armhf libopengl0 armhf 1.3.2-1 [32.7 kB] Get: 110 http://deb.debian.org/debian bullseye/main armhf libopengl-dev armhf 1.3.2-1 [5876 B] Get: 111 http://deb.debian.org/debian bullseye/main armhf libglvnd-dev armhf 1.3.2-1 [13.9 kB] Get: 112 http://deb.debian.org/debian bullseye/main armhf libgl1-mesa-dev armhf 20.3.4-1 [51.1 kB] Get: 113 http://deb.debian.org/debian bullseye/main armhf libglu1-mesa armhf 9.0.1-1 [130 kB] Get: 114 http://deb.debian.org/debian bullseye/main armhf libglu1-mesa-dev armhf 9.0.1-1 [171 kB] Get: 115 http://deb.debian.org/debian bullseye/main armhf x11proto-xext-dev all 2020.1-1 [3404 B] Get: 116 http://deb.debian.org/debian bullseye/main armhf libxext-dev armhf 2:1.3.3-1.1 [103 kB] Get: 117 http://deb.debian.org/debian bullseye/main armhf x11-common all 1:7.7+22 [252 kB] Get: 118 http://deb.debian.org/debian bullseye/main armhf libice6 armhf 2:1.0.10-1 [51.9 kB] Get: 119 http://deb.debian.org/debian bullseye/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB] Get: 120 http://deb.debian.org/debian bullseye/main armhf libxt6 armhf 1:1.2.0-1 [161 kB] Get: 121 http://deb.debian.org/debian bullseye/main armhf libice-dev armhf 2:1.0.10-1 [61.9 kB] Get: 122 http://deb.debian.org/debian bullseye/main armhf libsm-dev armhf 2:1.2.3-1 [36.1 kB] Get: 123 http://deb.debian.org/debian bullseye/main armhf libxt-dev armhf 1:1.2.0-1 [388 kB] Get: 124 http://deb.debian.org/debian bullseye/main armhf freeglut3-dev armhf 2.8.1-6 [170 kB] Get: 125 http://deb.debian.org/debian bullseye/main armhf libblas3 armhf 3.9.0-3 [109 kB] Get: 126 http://deb.debian.org/debian bullseye/main armhf libblas-dev armhf 3.9.0-3 [118 kB] Get: 127 http://deb.debian.org/debian bullseye/main armhf libgfortran5 armhf 10.2.1-6 [237 kB] Get: 128 http://deb.debian.org/debian bullseye/main armhf liblapack3 armhf 3.9.0-3 [1651 kB] Get: 129 http://deb.debian.org/debian bullseye/main armhf liblapack-dev armhf 3.9.0-3 [1719 kB] Get: 130 http://deb.debian.org/debian bullseye/main armhf libmmdb2-0 armhf 2.0.5-1 [272 kB] Get: 131 http://deb.debian.org/debian bullseye/main armhf libmmdb2-dev armhf 2.0.5-1 [91.9 kB] Get: 132 http://deb.debian.org/debian bullseye/main armhf libxfixes-dev armhf 1:5.0.3-2 [22.9 kB] Get: 133 http://deb.debian.org/debian bullseye/main armhf x11proto-input-dev all 2020.1-1 [3412 B] Get: 134 http://deb.debian.org/debian bullseye/main armhf libxi-dev armhf 2:1.7.10-1 [236 kB] Get: 135 http://deb.debian.org/debian bullseye/main armhf libxmu6 armhf 2:1.1.2-2+b3 [52.7 kB] Get: 136 http://deb.debian.org/debian bullseye/main armhf libxmu-headers all 2:1.1.2-2 [51.9 kB] Get: 137 http://deb.debian.org/debian bullseye/main armhf libxmu-dev armhf 2:1.1.2-2+b3 [59.3 kB] Get: 138 http://deb.debian.org/debian bullseye/main armhf libsimbody3.6 armhf 3.6.1+dfsg-7 [2738 kB] Get: 139 http://deb.debian.org/debian bullseye/main armhf libsimbody-dev armhf 3.6.1+dfsg-7 [2725 kB] Fetched 70.4 MB in 10s (7111 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-7_armhf.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../001-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-6_armhf.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../003-libpipeline1_1.5.3-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_armhf.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libncurses6:armhf. Preparing to unpack .../005-libncurses6_6.2+20201114-2_armhf.deb ... Unpacking libncurses6:armhf (6.2+20201114-2) ... Selecting previously unselected package libprocps8:armhf. Preparing to unpack .../006-libprocps8_2%3a3.3.17-5_armhf.deb ... Unpacking libprocps8:armhf (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../007-procps_2%3a3.3.17-5_armhf.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../008-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../009-libmagic-mgc_1%3a5.39-3_armhf.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../010-libmagic1_1%3a5.39-3_armhf.deb ... Unpacking libmagic1:armhf (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../011-file_1%3a5.39-3_armhf.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../012-gettext-base_0.21-4_armhf.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../013-libsigsegv2_2.13-1_armhf.deb ... Unpacking libsigsegv2:armhf (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.18-5_armhf.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../015-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../016-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../017-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../018-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package cmake-data. Preparing to unpack .../019-cmake-data_3.18.4-2_all.deb ... Unpacking cmake-data (3.18.4-2) ... Selecting previously unselected package libicu67:armhf. Preparing to unpack .../020-libicu67_67.1-7_armhf.deb ... Unpacking libicu67:armhf (67.1-7) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../021-libxml2_2.9.10+dfsg-6.7_armhf.deb ... Unpacking libxml2:armhf (2.9.10+dfsg-6.7) ... Selecting previously unselected package libarchive13:armhf. Preparing to unpack .../022-libarchive13_3.4.3-2+b1_armhf.deb ... Unpacking libarchive13:armhf (3.4.3-2+b1) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../023-libbrotli1_1.0.9-2+b2_armhf.deb ... Unpacking libbrotli1:armhf (1.0.9-2+b2) ... Selecting previously unselected package libsasl2-modules-db:armhf. Preparing to unpack .../024-libsasl2-modules-db_2.1.27+dfsg-2.1_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:armhf. Preparing to unpack .../025-libsasl2-2_2.1.27+dfsg-2.1_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:armhf. Preparing to unpack .../026-libldap-2.4-2_2.4.57+dfsg-3_armhf.deb ... Unpacking libldap-2.4-2:armhf (2.4.57+dfsg-3) ... Selecting previously unselected package libnghttp2-14:armhf. Preparing to unpack .../027-libnghttp2-14_1.43.0-1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.43.0-1) ... Selecting previously unselected package libpsl5:armhf. Preparing to unpack .../028-libpsl5_0.21.0-1.2_armhf.deb ... Unpacking libpsl5:armhf (0.21.0-1.2) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../029-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:armhf. Preparing to unpack .../030-libssh2-1_1.9.0-2_armhf.deb ... Unpacking libssh2-1:armhf (1.9.0-2) ... Selecting previously unselected package libcurl4:armhf. Preparing to unpack .../031-libcurl4_7.74.0-1.3+b1_armhf.deb ... Unpacking libcurl4:armhf (7.74.0-1.3+b1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../032-libexpat1_2.2.10-2_armhf.deb ... Unpacking libexpat1:armhf (2.2.10-2) ... Selecting previously unselected package libjsoncpp24:armhf. Preparing to unpack .../033-libjsoncpp24_1.9.4-4_armhf.deb ... Unpacking libjsoncpp24:armhf (1.9.4-4) ... Selecting previously unselected package librhash0:armhf. Preparing to unpack .../034-librhash0_1.4.1-2_armhf.deb ... Unpacking librhash0:armhf (1.4.1-2) ... Selecting previously unselected package libuv1:armhf. Preparing to unpack .../035-libuv1_1.40.0-2_armhf.deb ... Unpacking libuv1:armhf (1.40.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../036-cmake_3.18.4-2_armhf.deb ... Unpacking cmake (3.18.4-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../037-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../038-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../039-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../040-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../041-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../042-libfile-stripnondeterminism-perl_1.11.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.11.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../043-dh-strip-nondeterminism_1.11.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.11.0-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../044-libelf1_0.183-1_armhf.deb ... Unpacking libelf1:armhf (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../045-dwz_0.13+20210201-1_armhf.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package gettext. Preparing to unpack .../046-gettext_0.21-4_armhf.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../047-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../048-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../049-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package libglvnd0:armhf. Preparing to unpack .../050-libglvnd0_1.3.2-1_armhf.deb ... Unpacking libglvnd0:armhf (1.3.2-1) ... Selecting previously unselected package libxau6:armhf. Preparing to unpack .../051-libxau6_1%3a1.0.9-1_armhf.deb ... Unpacking libxau6:armhf (1:1.0.9-1) ... Selecting previously unselected package libmd0:armhf. Preparing to unpack .../052-libmd0_1.0.3-3_armhf.deb ... Unpacking libmd0:armhf (1.0.3-3) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../053-libbsd0_0.11.3-1_armhf.deb ... Unpacking libbsd0:armhf (0.11.3-1) ... Selecting previously unselected package libxdmcp6:armhf. Preparing to unpack .../054-libxdmcp6_1%3a1.1.2-3_armhf.deb ... Unpacking libxdmcp6:armhf (1:1.1.2-3) ... Selecting previously unselected package libxcb1:armhf. Preparing to unpack .../055-libxcb1_1.14-3_armhf.deb ... Unpacking libxcb1:armhf (1.14-3) ... Selecting previously unselected package libx11-data. Preparing to unpack .../056-libx11-data_2%3a1.7.1-1_all.deb ... Unpacking libx11-data (2:1.7.1-1) ... Selecting previously unselected package libx11-6:armhf. Preparing to unpack .../057-libx11-6_2%3a1.7.1-1_armhf.deb ... 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Setting up libpsl5:armhf (0.21.0-1.2) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:armhf (67.1-7) ... Setting up libmmdb2-0:armhf (2.0.5-1) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglvnd0:armhf (1.3.2-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:armhf (1.0.9-2+b2) ... Setting up x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libsensors-config (1:3.6.0-7) ... Setting up libnghttp2-14:armhf (1.43.0-1) ... Setting up libmagic1:armhf (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libpthread-stubs0-dev:armhf (0.4-1) ... Setting up libopengl0:armhf (1.3.2-1) ... Setting up libsasl2-modules-db:armhf (2.1.27+dfsg-2.1) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libz3-4:armhf (4.8.10-1) ... Setting up libblas3:armhf (3.9.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libuv1:armhf (1.40.0-2) ... Setting up libgles2:armhf (1.3.2-1) ... Setting up libx11-data (2:1.7.1-1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:armhf (6.2+20201114-2) ... Setting up libgles1:armhf (1.3.2-1) ... Setting up libsigsegv2:armhf (2.13-1) ... Setting up libmmdb2-dev (2.0.5-1) ... Setting up autopoint (0.21-4) ... Setting up libsensors5:armhf (1:3.6.0-7) ... Setting up libglapi-mesa:armhf (20.3.4-1) ... Setting up libsasl2-2:armhf (2.1.27+dfsg-2.1) ... Setting up libgfortran5:armhf (10.2.1-6) ... Setting up libvulkan1:armhf (1.2.162.0-1) ... Setting up libjsoncpp24:armhf (1.9.4-4) ... Setting up libmd0:armhf (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up libxshmfence1:armhf (1.3-1) ... Setting up librhash0:armhf (1.4.1-2) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:armhf (1.9.0-2) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up cmake-data (3.18.4-2) ... Setting up libopengl-dev:armhf (1.3.2-1) ... Setting up libbsd0:armhf (0.11.3-1) ... Setting up libdrm-common (2.4.104-1) ... Setting up libelf1:armhf (0.183-1) ... Setting up libxml2:armhf (2.9.10+dfsg-6.7) ... Setting up libprocps8:armhf (2:3.3.17-5) ... Setting up libblas-dev:armhf (3.9.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up libwayland-client0:armhf (1.18.0-2~exp1.1) ... Setting up x11proto-dev (2020.1-1) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... 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Setting up libxcb-sync1:armhf (1.14-3) ... Setting up liblapack-dev:armhf (3.9.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up x11proto-input-dev (2020.1-1) ... Setting up autoconf (2.69-14) ... Setting up libxcb-dri2-0:armhf (1.14-3) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up x11proto-xext-dev (2020.1-1) ... Setting up libdrm2:armhf (2.4.104-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up procps (2:3.3.17-5) ... Setting up libcurl4:armhf (7.74.0-1.3+b1) ... Setting up libx11-6:armhf (2:1.7.1-1) ... Setting up libsm6:armhf (2:1.2.3-1) ... Setting up libdrm-amdgpu1:armhf (2.4.104-1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:armhf (1.14-3) ... 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Setting up libglx-mesa0:armhf (20.3.4-1) ... Setting up libxi6:armhf (2:1.7.10-1) ... Setting up libglx0:armhf (1.3.2-1) ... Setting up debhelper (13.3.4) ... Setting up libxfixes-dev:armhf (1:5.0.3-2) ... Setting up libgl1:armhf (1.3.2-1) ... Setting up libxt-dev:armhf (1:1.2.0-1) ... Setting up libglx-dev:armhf (1.3.2-1) ... Setting up libglu1-mesa:armhf (9.0.1-1) ... Setting up libxi-dev:armhf (2:1.7.10-1) ... Setting up libgl-dev:armhf (1.3.2-1) ... Setting up freeglut3:armhf (2.8.1-6) ... Setting up libegl-dev:armhf (1.3.2-1) ... Setting up libxmu-dev:armhf (2:1.1.2-2+b3) ... Setting up libglu1-mesa-dev:armhf (9.0.1-1) ... Setting up libsimbody3.6:armhf (3.6.1+dfsg-7) ... Setting up libgles-dev:armhf (1.3.2-1) ... Setting up libglvnd-dev:armhf (1.3.2-1) ... Setting up libgl1-mesa-dev:armhf (20.3.4-1) ... Setting up freeglut3-dev:armhf (2.8.1-6) ... Setting up libsimbody-dev:armhf (3.6.1+dfsg-7) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/molmodel-3.0~svn842/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../molmodel_3.0~svn842-2_source.changes dpkg-buildpackage: info: source package molmodel dpkg-buildpackage: info: source version 3.0~svn842-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find OpenMM (missing: OpenMM_INCLUDE_DIR OpenMM_LIBRARY OpenMM_LIBRARIES) -- Could not find 'svnversion' executable; 'about' will be wrong. (Cygwin provides one on Windows.) -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf dh_auto_build cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' /usr/bin/cmake -S"/build/molmodel-3.0~svn842" -B"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/CMakeFiles" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f sharedTarget/CMakeFiles/SimTKmolmodel.dir/build.make sharedTarget/CMakeFiles/SimTKmolmodel.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/sharedTarget" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget/CMakeFiles/SimTKmolmodel.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget/CMakeFiles/SimTKmolmodel.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget/CMakeFiles/SimTKmolmodel.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget/CMakeFiles/SimTKmolmodel.dir/depend.internal". Scanning dependencies of target SimTKmolmodel make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f sharedTarget/CMakeFiles/SimTKmolmodel.dir/build.make sharedTarget/CMakeFiles/SimTKmolmodel.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 2%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Biotype.cpp.o [ 2%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/About.cpp.o [ 2%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/AtomSubsystem.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/About.cpp.o -c "/build/molmodel-3.0~svn842/src/About.cpp" cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/AtomSubsystem.cpp.o -c "/build/molmodel-3.0~svn842/src/AtomSubsystem.cpp" cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/Biotype.cpp.o -c "/build/molmodel-3.0~svn842/src/Biotype.cpp" [ 3%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/BondGeometry.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/BondGeometry.cpp.o -c "/build/molmodel-3.0~svn842/src/BondGeometry.cpp" [ 4%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Compound.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/Compound.cpp.o -c "/build/molmodel-3.0~svn842/src/Compound.cpp" In file included from /usr/include/c++/10/vector:72, from /usr/include/simbody/SimTKcommon/internal/Array.h:39, from /usr/include/simbody/SimTKcommon/basics.h:53, from /usr/include/simbody/SimTKcommon.h:32, from /usr/include/simbody/SimTKsimbody.h:43, from /build/molmodel-3.0~svn842/./include/molmodel/internal/AtomSubsystem.h:4, from /build/molmodel-3.0~svn842/src/AtomSubsystem.cpp:1: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, SimTK::AtomSubsystem::AtomIndex>}; _Tp = std::pair, SimTK::AtomSubsystem::AtomIndex>; _Alloc = std::allocator, SimTK::AtomSubsystem::AtomIndex> >]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector, SimTK::AtomSubsystem::AtomIndex>, std::allocator, SimTK::AtomSubsystem::AtomIndex> > >::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void SimTK::AtomSubsystem::PairIterator::populateVoxelHash(std::vector::const_iterator)': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, SimTK::AtomSubsystem::AtomIndex>*, std::vector, SimTK::AtomSubsystem::AtomIndex>, std::allocator, SimTK::AtomSubsystem::AtomIndex> > > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {SimTK::AtomSubsystem::Atom}; _Tp = SimTK::AtomSubsystem::Atom; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'SimTK::AtomSubsystem::AtomIndex SimTK::AtomSubsystem::addAtom(SimTK::AtomSubsystem::mass_t)': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 4%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/CompoundSystem.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/CompoundSystem.cpp.o -c "/build/molmodel-3.0~svn842/src/CompoundSystem.cpp" [ 5%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystem.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystem.cpp.o -c "/build/molmodel-3.0~svn842/src/DuMMForceFieldSubsystem.cpp" In file included from /usr/include/c++/10/set:60, from /usr/include/simbody/simmath/internal/Contact.h:30, from /usr/include/simbody/SimTKmath.h:46, from /usr/include/simbody/SimTKsimbody.h:44, from /build/molmodel-3.0~svn842/./include/molmodel/internal/CompoundSystem.h:4, from /build/molmodel-3.0~svn842/src/CompoundSystem.cpp:1: /usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = SimTK::Compound::AtomIndex; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/map:61, from /usr/include/simbody/simmath/internal/CollisionDetectionAlgorithm.h:32, from /usr/include/simbody/SimTKmath.h:48, from /usr/include/simbody/SimTKsimbody.h:44, from /build/molmodel-3.0~svn842/./include/molmodel/internal/CompoundSystem.h:4, from /build/molmodel-3.0~svn842/src/CompoundSystem.cpp:1: /usr/include/c++/10/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = SimTK::Compound::AtomIndex; _Tp = SimTK::AtomBonding; _Compare = std::less; _Alloc = std::allocator >]': /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/set:60, from /usr/include/simbody/simmath/internal/Contact.h:30, from /usr/include/simbody/SimTKmath.h:46, from /usr/include/simbody/SimTKsimbody.h:44, from /build/molmodel-3.0~svn842/./include/molmodel/internal/CompoundSystem.h:4, from /build/molmodel-3.0~svn842/src/CompoundSystem.cpp:1: /usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = SimTK::DuMM::ClusterIndex; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/map:61, from /usr/include/simbody/simmath/internal/CollisionDetectionAlgorithm.h:32, from /usr/include/simbody/SimTKmath.h:48, from /usr/include/simbody/SimTKsimbody.h:44, from /build/molmodel-3.0~svn842/./include/molmodel/internal/CompoundSystem.h:4, from /build/molmodel-3.0~svn842/src/CompoundSystem.cpp:1: /usr/include/c++/10/bits/stl_map.h: In member function 'void SimTK::CompoundSystem::modelOneCompound(SimTK::CompoundSystem::CompoundIndex, SimTK::String)': /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /usr/include/simbody/SimTKcommon/internal/Array.h:39, from /usr/include/simbody/SimTKcommon/basics.h:53, from /usr/include/simbody/SimTKcommon.h:32, from /usr/include/simbody/SimTKsimbody.h:43, from /build/molmodel-3.0~svn842/src/Compound.cpp:32: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const SimTK::PdbAtomLocation&}; _Tp = SimTK::PdbAtomLocation; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystemRep.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystemRep.cpp.o -c "/build/molmodel-3.0~svn842/src/DuMMForceFieldSubsystemRep.cpp" /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const SimTK::Vec<3, double, 1>&}; _Tp = SimTK::Vec<3>; _Alloc = std::allocator >]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {SimTK::BondCenter}; _Tp = SimTK::BondCenter; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {SimTK::BondCenter}; _Tp = SimTK::BondCenter; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, SimTK::UnitVec >}; _Tp = std::pair, SimTK::UnitVec >; _Alloc = std::allocator, SimTK::UnitVec > >]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector, SimTK::UnitVec > >::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {SimTK::Vec3Pair}; _Tp = SimTK::Vec3Pair; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/10/bits/vector.tcc: In member function 'SimTK::TransformAndResidual SimTK::CompoundRep::getTransformAndResidual(const AtomTargetLocations&) const': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {SimTK::BondInfo}; _Tp = SimTK::BondInfo; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {SimTK::BondInfo}; _Tp = SimTK::BondInfo; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {SimTK::Vec<3, double, 1>}; _Tp = SimTK::Vec<3>; _Alloc = std::allocator >]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {SimTK::Vec<3, double, 1>}; _Tp = SimTK::Vec<3>; _Alloc = std::allocator >]': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/include/simbody/SimTKcommon/internal/Array.h:39, from /usr/include/simbody/SimTKcommon/basics.h:53, from /usr/include/simbody/SimTKcommon.h:32, from /usr/include/simbody/SimTKsimbody.h:43, from /build/molmodel-3.0~svn842/src/Compound.cpp:32: /usr/include/c++/10/bits/stl_vector.h: In member function 'SimTK::PdbAtom& SimTK::PdbAtom::setLocation(const SimTK::PdbAtomLocation&)': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /usr/include/simbody/SimTKcommon/internal/Array.h:39, from /usr/include/simbody/SimTKcommon/basics.h:53, from /usr/include/simbody/SimTKcommon.h:32, from /usr/include/simbody/SimTKsimbody.h:43, from /build/molmodel-3.0~svn842/src/Compound.cpp:32: /usr/include/c++/10/bits/vector.tcc: In function 'SimTK::CompoundRep& SimTK::CompoundRep::matchDefaultAtomChirality(const AtomTargetLocations&, double&, SimTK::Angle, bool)': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, SimTK::UnitVec >*, std::vector, SimTK::UnitVec > > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/include/simbody/SimTKcommon/internal/Array.h:39, from /usr/include/simbody/SimTKcommon/basics.h:53, from /usr/include/simbody/SimTKcommon.h:32, from /usr/include/simbody/SimTKsimbody.h:43, from /build/molmodel-3.0~svn842/src/Compound.cpp:32: /usr/include/c++/10/bits/stl_vector.h: In member function 'SimTK::Compound& SimTK::Compound::fitDefaultConfiguration(const AtomTargetLocations&, SimTK::Real, bool, SimTK::Real)': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /usr/include/simbody/SimTKcommon/internal/Array.h:39, from /usr/include/simbody/SimTKcommon/basics.h:53, from /usr/include/simbody/SimTKcommon.h:32, from /usr/include/simbody/SimTKsimbody.h:43, from /build/molmodel-3.0~svn842/src/Compound.cpp:32: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {SimTK::AtomInfo}; _Tp = SimTK::AtomInfo; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'SimTK::CompoundRep& SimTK::CompoundRep::setBaseAtom(const AtomName&, const SimTK::Element&, const Transform&)': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const SimTK::AtomInfo&}; _Tp = SimTK::AtomInfo; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/include/simbody/SimTKcommon/internal/Array.h:39, from /usr/include/simbody/SimTKcommon/basics.h:53, from /usr/include/simbody/SimTKcommon.h:32, from /usr/include/simbody/SimTKsimbody.h:43, from /build/molmodel-3.0~svn842/src/Compound.cpp:32: /usr/include/c++/10/bits/stl_vector.h: In member function 'SimTK::Compound::BondCenterIndex SimTK::CompoundRep::absorbSubcompound(const Name&, const SimTK::Compound&, bool)': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 6%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Element.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/Element.cpp.o -c "/build/molmodel-3.0~svn842/src/Element.cpp" /usr/include/c++/10/bits/stl_vector.h: In member function 'void SimTK::Protein::loadFromPdbChain(const SimTK::PdbChain&, SimTK::Real)': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 7%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/MolecularMechanicsSystem.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/MolecularMechanicsSystem.cpp.o -c "/build/molmodel-3.0~svn842/src/MolecularMechanicsSystem.cpp" In file included from /usr/include/c++/10/vector:72, from /usr/include/simbody/SimTKcommon/internal/Array.h:39, from /usr/include/simbody/SimTKcommon/basics.h:53, from /usr/include/simbody/SimTKcommon.h:32, from /usr/include/simbody/SimTKsimbody.h:43, from /build/molmodel-3.0~svn842/src/MolecularMechanicsSystem.cpp:37: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, 1> >}; _Tp = std::pair > >; _Alloc = std::allocator > > >]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector > > >::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair >}; _Tp = std::pair >; _Alloc = std::allocator > >]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector > >::iterator' changed in GCC 7.1 /usr/include/c++/10/bits/vector.tcc: In member function 'void SimTK::MolecularMechanicsSystem::moveSystemMassCenter(SimTK::State&, const Vec3&) const': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void SimTK::MolecularMechanicsSystem::removeSystemRigidBodyMomentum(SimTK::State&, bool) const': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >*, std::vector > > > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 8%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/PDBReader.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/PDBReader.cpp.o -c "/build/molmodel-3.0~svn842/src/PDBReader.cpp" [ 9%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Pdb.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/Pdb.cpp.o -c "/build/molmodel-3.0~svn842/src/Pdb.cpp" [ 9%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/PeriodicVmdReporter.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/PeriodicVmdReporter.cpp.o -c "/build/molmodel-3.0~svn842/src/PeriodicVmdReporter.cpp" In file included from /usr/include/c++/10/vector:72, from /usr/include/simbody/SimTKcommon/internal/Array.h:39, from /usr/include/simbody/SimTKcommon/basics.h:53, from /usr/include/simbody/SimTKcommon.h:32, from /usr/include/simbody/SimTKsimbody.h:43, from /build/molmodel-3.0~svn842/./include/molmodel/internal/Pdb.h:4, from /build/molmodel-3.0~svn842/src/Pdb.cpp:4: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {SimTK::PdbAtomLocation}; _Tp = SimTK::PdbAtomLocation; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {SimTK::PdbAtomLocation}; _Tp = SimTK::PdbAtomLocation; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 10%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/RiboseMobilizer.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/RiboseMobilizer.cpp.o -c "/build/molmodel-3.0~svn842/src/RiboseMobilizer.cpp" In file included from /usr/include/c++/10/vector:72, from /usr/include/simbody/SimTKcommon/internal/Array.h:39, from /usr/include/simbody/SimTKcommon/basics.h:53, from /usr/include/simbody/SimTKcommon.h:32, from /build/molmodel-3.0~svn842/./include/molmodel/internal/common.h:40, from /build/molmodel-3.0~svn842/./include/molmodel/internal/PDBReader.h:35, from /build/molmodel-3.0~svn842/src/PDBReader.cpp:32: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {SimTK::Vec<3, double, 1>}; _Tp = SimTK::Vec<3>; _Alloc = std::allocator >]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {SimTK::Vec<3, double, 1>}; _Tp = SimTK::Vec<3>; _Alloc = std::allocator >]': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/TinkerAmber99.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/TinkerAmber99.cpp.o -c "/build/molmodel-3.0~svn842/src/TinkerAmber99.cpp" [ 11%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/VanderWallSphere.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/VanderWallSphere.cpp.o -c "/build/molmodel-3.0~svn842/src/VanderWallSphere.cpp" [ 12%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/VelocityRescalingThermostat.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/VelocityRescalingThermostat.cpp.o -c "/build/molmodel-3.0~svn842/src/VelocityRescalingThermostat.cpp" [ 13%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/VmdConnection.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/VmdConnection.cpp.o -c "/build/molmodel-3.0~svn842/src/VmdConnection.cpp" [ 14%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuImplicitSolvent.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuImplicitSolvent.cpp.o -c "/build/molmodel-3.0~svn842/src/gbsa/CpuImplicitSolvent.cpp" [ 14%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuObc.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuObc.cpp.o -c "/build/molmodel-3.0~svn842/src/gbsa/CpuObc.cpp" [ 15%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ImplicitSolventParameters.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ImplicitSolventParameters.cpp.o -c "/build/molmodel-3.0~svn842/src/gbsa/ImplicitSolventParameters.cpp" [ 16%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ObcParameters.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ObcParameters.cpp.o -c "/build/molmodel-3.0~svn842/src/gbsa/ObcParameters.cpp" [ 16%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMCommon.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMCommon.cpp.o -c "/build/molmodel-3.0~svn842/src/gbsa/SimTKOpenMMCommon.cpp" [ 17%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMLog.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o 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CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMUtilities.cpp.o -c "/build/molmodel-3.0~svn842/src/gbsa/SimTKOpenMMUtilities.cpp" [ 19%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/cpuObcInterface.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/cpuObcInterface.cpp.o -c "/build/molmodel-3.0~svn842/src/gbsa/cpuObcInterface.cpp" [ 19%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/imd.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/imd.cpp.o -c "/build/molmodel-3.0~svn842/src/imd.cpp" [ 20%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/mol.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/mol.cpp.o -c "/build/molmodel-3.0~svn842/src/mol.cpp" [ 21%] Building C object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/vmdsock.c.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/cc -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/vmdsock.c.o -c "/build/molmodel-3.0~svn842/src/vmdsock.c" /build/molmodel-3.0~svn842/src/mol.cpp: In function 'void mol_DbGromacsRead(MolModel*, FILE*)': /build/molmodel-3.0~svn842/src/mol.cpp:1326:29: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 1326 | sprintf (atom_name, " %s", s); | ^ In file included from /usr/include/stdio.h:867, from /usr/include/c++/10/cstdio:42, from /build/molmodel-3.0~svn842/src/mol.h:14, from /build/molmodel-3.0~svn842/src/mol.cpp:15: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 21%] Linking CXX shared library ../libSimTKmolmodel.so cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/cmake -E cmake_link_script CMakeFiles/SimTKmolmodel.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -shared -Wl,-soname,libSimTKmolmodel.so.3.0 -o ../libSimTKmolmodel.so.3.0 CMakeFiles/SimTKmolmodel.dir/__/src/About.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/AtomSubsystem.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/Biotype.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/BondGeometry.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/Compound.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/CompoundSystem.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystem.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystemRep.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/Element.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/MolecularMechanicsSystem.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/PDBReader.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/Pdb.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/PeriodicVmdReporter.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/RiboseMobilizer.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/TinkerAmber99.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/VanderWallSphere.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/VelocityRescalingThermostat.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/VmdConnection.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuImplicitSolvent.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuObc.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ImplicitSolventParameters.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ObcParameters.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMCommon.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMLog.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMUtilities.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/cpuObcInterface.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/imd.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/mol.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/vmdsock.c.o /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 -lmmdb2 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/cmake -E cmake_symlink_library ../libSimTKmolmodel.so.3.0 ../libSimTKmolmodel.so.3.0 ../libSimTKmolmodel.so make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 21%] Built target SimTKmolmodel make -f examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/build.make examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/depend make -f examples/CMakeFiles/ExampleFoldPolyalanine.dir/build.make examples/CMakeFiles/ExampleFoldPolyalanine.dir/depend make -f examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/build.make examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/DependInfo.cmake" --color= make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleFoldPolyalanine.dir/DependInfo.cmake" --color= make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleFoldPolyalanine.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleFoldPolyalanine.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleFoldPolyalanine.dir/depend.internal". Scanning dependencies of target ExampleAdenylateMobilitiesViz make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/build.make examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/build Scanning dependencies of target ExampleAdenylateMobilitiesVMD Scanning dependencies of target ExampleFoldPolyalanine make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/build.make examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/build make -f examples/CMakeFiles/ExampleFoldPolyalanine.dir/build.make examples/CMakeFiles/ExampleFoldPolyalanine.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 22%] Building CXX object examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/ExampleAdenylateMobilitiesViz.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleAdenylateMobilitiesViz.dir/ExampleAdenylateMobilitiesViz.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleAdenylateMobilitiesViz.cpp" [ 23%] Building CXX object examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/ExampleAdenylateMobilitiesVMD.cpp.o [ 23%] Building CXX object examples/CMakeFiles/ExampleFoldPolyalanine.dir/ExampleFoldPolyalanine.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleFoldPolyalanine.dir/ExampleFoldPolyalanine.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleFoldPolyalanine.cpp" cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/ExampleAdenylateMobilitiesVMD.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleAdenylateMobilitiesVMD.cpp" [ 23%] Linking CXX executable ../ExampleAdenylateMobilitiesViz cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleAdenylateMobilitiesViz.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleAdenylateMobilitiesViz.dir/ExampleAdenylateMobilitiesViz.cpp.o -o ../ExampleAdenylateMobilitiesViz -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 [ 24%] Linking CXX executable ../ExampleAdenylateMobilitiesVMD cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/ExampleAdenylateMobilitiesVMD.cpp.o -o ../ExampleAdenylateMobilitiesVMD -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 24%] Built target ExampleAdenylateMobilitiesViz make -f examples/CMakeFiles/ExampleCreatePropane.dir/build.make examples/CMakeFiles/ExampleCreatePropane.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleCreatePropane.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleCreatePropane.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleCreatePropane.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleCreatePropane.dir/depend.internal". Scanning dependencies of target ExampleCreatePropane make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f examples/CMakeFiles/ExampleCreatePropane.dir/build.make examples/CMakeFiles/ExampleCreatePropane.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 25%] Building CXX object examples/CMakeFiles/ExampleCreatePropane.dir/ExampleCreatePropane.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleCreatePropane.dir/ExampleCreatePropane.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleCreatePropane.cpp" make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 25%] Built target ExampleAdenylateMobilitiesVMD make -f examples/CMakeFiles/MolmodelInstallTest.dir/build.make examples/CMakeFiles/MolmodelInstallTest.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/MolmodelInstallTest.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/MolmodelInstallTest.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/MolmodelInstallTest.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/MolmodelInstallTest.dir/depend.internal". Scanning dependencies of target MolmodelInstallTest make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f examples/CMakeFiles/MolmodelInstallTest.dir/build.make examples/CMakeFiles/MolmodelInstallTest.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 26%] Building CXX object examples/CMakeFiles/MolmodelInstallTest.dir/MolmodelInstallTest.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/MolmodelInstallTest.dir/MolmodelInstallTest.cpp.o -c "/build/molmodel-3.0~svn842/examples/MolmodelInstallTest.cpp" [ 26%] Linking CXX executable ../ExampleFoldPolyalanine cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleFoldPolyalanine.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleFoldPolyalanine.dir/ExampleFoldPolyalanine.cpp.o -o ../ExampleFoldPolyalanine -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 26%] Built target ExampleFoldPolyalanine make -f examples/CMakeFiles/ExampleLoadPdb2.dir/build.make examples/CMakeFiles/ExampleLoadPdb2.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleLoadPdb2.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleLoadPdb2.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleLoadPdb2.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleLoadPdb2.dir/depend.internal". Scanning dependencies of target ExampleLoadPdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f examples/CMakeFiles/ExampleLoadPdb2.dir/build.make examples/CMakeFiles/ExampleLoadPdb2.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 26%] Building CXX object examples/CMakeFiles/ExampleLoadPdb2.dir/ExampleLoadPdb2.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleLoadPdb2.dir/ExampleLoadPdb2.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleLoadPdb2.cpp" [ 27%] Linking CXX executable ../ExampleCreatePropane cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleCreatePropane.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleCreatePropane.dir/ExampleCreatePropane.cpp.o -o ../ExampleCreatePropane -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 [ 28%] Linking CXX executable ../ExampleLoadPdb2 cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleLoadPdb2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleLoadPdb2.dir/ExampleLoadPdb2.cpp.o -o ../ExampleLoadPdb2 -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 28%] Built target ExampleCreatePropane make -f examples/CMakeFiles/ExampleTwoArgonAtoms.dir/build.make examples/CMakeFiles/ExampleTwoArgonAtoms.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleTwoArgonAtoms.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleTwoArgonAtoms.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleTwoArgonAtoms.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleTwoArgonAtoms.dir/depend.internal". Scanning dependencies of target ExampleTwoArgonAtoms make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f examples/CMakeFiles/ExampleTwoArgonAtoms.dir/build.make examples/CMakeFiles/ExampleTwoArgonAtoms.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 29%] Building CXX object examples/CMakeFiles/ExampleTwoArgonAtoms.dir/ExampleTwoArgonAtoms.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleTwoArgonAtoms.dir/ExampleTwoArgonAtoms.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleTwoArgonAtoms.cpp" make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 29%] Built target ExampleLoadPdb2 make -f examples/CMakeFiles/ExampleRigidProtein.dir/build.make examples/CMakeFiles/ExampleRigidProtein.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleRigidProtein.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleRigidProtein.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleRigidProtein.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleRigidProtein.dir/depend.internal". Scanning dependencies of target ExampleRigidProtein make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f examples/CMakeFiles/ExampleRigidProtein.dir/build.make examples/CMakeFiles/ExampleRigidProtein.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 30%] Building CXX object examples/CMakeFiles/ExampleRigidProtein.dir/ExampleRigidProtein.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleRigidProtein.dir/ExampleRigidProtein.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleRigidProtein.cpp" [ 31%] Linking CXX executable ../MolmodelInstallTest cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolmodelInstallTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/MolmodelInstallTest.dir/MolmodelInstallTest.cpp.o -o ../MolmodelInstallTest -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 31%] Built target MolmodelInstallTest make -f examples/CMakeFiles/ExampleSimpleProtein.dir/build.make examples/CMakeFiles/ExampleSimpleProtein.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleSimpleProtein.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleSimpleProtein.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleSimpleProtein.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleSimpleProtein.dir/depend.internal". Scanning dependencies of target ExampleSimpleProtein make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f examples/CMakeFiles/ExampleSimpleProtein.dir/build.make examples/CMakeFiles/ExampleSimpleProtein.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 31%] Building CXX object examples/CMakeFiles/ExampleSimpleProtein.dir/ExampleSimpleProtein.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleSimpleProtein.dir/ExampleSimpleProtein.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleSimpleProtein.cpp" [ 32%] Linking CXX executable ../ExampleTwoArgonAtoms cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleTwoArgonAtoms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleTwoArgonAtoms.dir/ExampleTwoArgonAtoms.cpp.o -o ../ExampleTwoArgonAtoms -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 32%] Built target ExampleTwoArgonAtoms make -f examples/CMakeFiles/ExampleSimpleRNA.dir/build.make examples/CMakeFiles/ExampleSimpleRNA.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleSimpleRNA.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleSimpleRNA.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleSimpleRNA.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleSimpleRNA.dir/depend.internal". Scanning dependencies of target ExampleSimpleRNA make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f examples/CMakeFiles/ExampleSimpleRNA.dir/build.make examples/CMakeFiles/ExampleSimpleRNA.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 33%] Building CXX object examples/CMakeFiles/ExampleSimpleRNA.dir/ExampleSimpleRNA.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleSimpleRNA.dir/ExampleSimpleRNA.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleSimpleRNA.cpp" [ 34%] Linking CXX executable ../ExampleRigidProtein cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleRigidProtein.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleRigidProtein.dir/ExampleRigidProtein.cpp.o -o ../ExampleRigidProtein -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 34%] Built target ExampleRigidProtein make -f examples/CMakeFiles/ExampleTwoEthanes.dir/build.make examples/CMakeFiles/ExampleTwoEthanes.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleTwoEthanes.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleTwoEthanes.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleTwoEthanes.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleTwoEthanes.dir/depend.internal". Scanning dependencies of target ExampleTwoEthanes make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f examples/CMakeFiles/ExampleTwoEthanes.dir/build.make examples/CMakeFiles/ExampleTwoEthanes.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 35%] Building CXX object examples/CMakeFiles/ExampleTwoEthanes.dir/ExampleTwoEthanes.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleTwoEthanes.dir/ExampleTwoEthanes.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleTwoEthanes.cpp" [ 36%] Linking CXX executable ../ExampleSimpleProtein cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleSimpleProtein.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleSimpleProtein.dir/ExampleSimpleProtein.cpp.o -o ../ExampleSimpleProtein -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 36%] Built target ExampleSimpleProtein make -f examples/CMakeFiles/ExampleLoadPdb.dir/build.make examples/CMakeFiles/ExampleLoadPdb.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleLoadPdb.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleLoadPdb.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleLoadPdb.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleLoadPdb.dir/depend.internal". Scanning dependencies of target ExampleLoadPdb make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f examples/CMakeFiles/ExampleLoadPdb.dir/build.make examples/CMakeFiles/ExampleLoadPdb.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 37%] Building CXX object examples/CMakeFiles/ExampleLoadPdb.dir/ExampleLoadPdb.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleLoadPdb.dir/ExampleLoadPdb.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleLoadPdb.cpp" [ 37%] Linking CXX executable ../ExampleSimpleRNA cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleSimpleRNA.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleSimpleRNA.dir/ExampleSimpleRNA.cpp.o -o ../ExampleSimpleRNA -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 37%] Built target ExampleSimpleRNA make -f examples/CMakeFiles/MolmodelInstallTestNoViz.dir/build.make examples/CMakeFiles/MolmodelInstallTestNoViz.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/MolmodelInstallTestNoViz.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/MolmodelInstallTestNoViz.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/MolmodelInstallTestNoViz.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/MolmodelInstallTestNoViz.dir/depend.internal". Scanning dependencies of target MolmodelInstallTestNoViz make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f examples/CMakeFiles/MolmodelInstallTestNoViz.dir/build.make examples/CMakeFiles/MolmodelInstallTestNoViz.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 37%] Building CXX object examples/CMakeFiles/MolmodelInstallTestNoViz.dir/MolmodelInstallTestNoViz.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/MolmodelInstallTestNoViz.dir/MolmodelInstallTestNoViz.cpp.o -c "/build/molmodel-3.0~svn842/examples/MolmodelInstallTestNoViz.cpp" [ 37%] Linking CXX executable ../ExampleTwoEthanes cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleTwoEthanes.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleTwoEthanes.dir/ExampleTwoEthanes.cpp.o -o ../ExampleTwoEthanes -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 37%] Built target ExampleTwoEthanes make -f tests/CMakeFiles/TestWriteSimtimePdb.dir/build.make tests/CMakeFiles/TestWriteSimtimePdb.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestWriteSimtimePdb.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestWriteSimtimePdb.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestWriteSimtimePdb.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestWriteSimtimePdb.dir/depend.internal". Scanning dependencies of target TestWriteSimtimePdb make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestWriteSimtimePdb.dir/build.make tests/CMakeFiles/TestWriteSimtimePdb.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 38%] Building CXX object tests/CMakeFiles/TestWriteSimtimePdb.dir/TestWriteSimtimePdb.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestWriteSimtimePdb.dir/TestWriteSimtimePdb.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestWriteSimtimePdb.cpp" [ 39%] Linking CXX executable ../ExampleLoadPdb cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleLoadPdb.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleLoadPdb.dir/ExampleLoadPdb.cpp.o -o ../ExampleLoadPdb -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 39%] Built target ExampleLoadPdb make -f tests/CMakeFiles/TestTorsionPartitioner.dir/build.make tests/CMakeFiles/TestTorsionPartitioner.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestTorsionPartitioner.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestTorsionPartitioner.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestTorsionPartitioner.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestTorsionPartitioner.dir/depend.internal". Scanning dependencies of target TestTorsionPartitioner make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestTorsionPartitioner.dir/build.make tests/CMakeFiles/TestTorsionPartitioner.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 40%] Building CXX object tests/CMakeFiles/TestTorsionPartitioner.dir/TestTorsionPartitioner.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestTorsionPartitioner.dir/TestTorsionPartitioner.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestTorsionPartitioner.cpp" [ 41%] Linking CXX executable ../MolmodelInstallTestNoViz cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolmodelInstallTestNoViz.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/MolmodelInstallTestNoViz.dir/MolmodelInstallTestNoViz.cpp.o -o ../MolmodelInstallTestNoViz -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 41%] Built target MolmodelInstallTestNoViz make -f tests/CMakeFiles/TestTinkerAmber.dir/build.make tests/CMakeFiles/TestTinkerAmber.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestTinkerAmber.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestTinkerAmber.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestTinkerAmber.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestTinkerAmber.dir/depend.internal". Scanning dependencies of target TestTinkerAmber make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestTinkerAmber.dir/build.make tests/CMakeFiles/TestTinkerAmber.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 42%] Building CXX object tests/CMakeFiles/TestTinkerAmber.dir/TestTinkerAmber.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestTinkerAmber.dir/TestTinkerAmber.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestTinkerAmber.cpp" [ 43%] Linking CXX executable ../TestWriteSimtimePdb cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestWriteSimtimePdb.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestWriteSimtimePdb.dir/TestWriteSimtimePdb.cpp.o -o ../TestWriteSimtimePdb -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 43%] Built target TestWriteSimtimePdb make -f tests/CMakeFiles/TestVelocityRescalingThermostat.dir/build.make tests/CMakeFiles/TestVelocityRescalingThermostat.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestVelocityRescalingThermostat.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestVelocityRescalingThermostat.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestVelocityRescalingThermostat.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestVelocityRescalingThermostat.dir/depend.internal". Scanning dependencies of target TestVelocityRescalingThermostat make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestVelocityRescalingThermostat.dir/build.make tests/CMakeFiles/TestVelocityRescalingThermostat.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 44%] Building CXX object tests/CMakeFiles/TestVelocityRescalingThermostat.dir/TestVelocityRescalingThermostat.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestVelocityRescalingThermostat.dir/TestVelocityRescalingThermostat.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestVelocityRescalingThermostat.cpp" [ 45%] Linking CXX executable ../TestTorsionPartitioner cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestTorsionPartitioner.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestTorsionPartitioner.dir/TestTorsionPartitioner.cpp.o -o ../TestTorsionPartitioner -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 45%] Built target TestTorsionPartitioner make -f tests/CMakeFiles/TestShortPdbLines.dir/build.make tests/CMakeFiles/TestShortPdbLines.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestShortPdbLines.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestShortPdbLines.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestShortPdbLines.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestShortPdbLines.dir/depend.internal". Scanning dependencies of target TestShortPdbLines make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestShortPdbLines.dir/build.make tests/CMakeFiles/TestShortPdbLines.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 45%] Building CXX object tests/CMakeFiles/TestShortPdbLines.dir/TestShortPdbLines.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestShortPdbLines.dir/TestShortPdbLines.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestShortPdbLines.cpp" [ 45%] Linking CXX executable ../TestTinkerAmber cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestTinkerAmber.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestTinkerAmber.dir/TestTinkerAmber.cpp.o -o ../TestTinkerAmber -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 45%] Built target TestTinkerAmber make -f tests/CMakeFiles/TestGbsa.dir/build.make tests/CMakeFiles/TestGbsa.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestGbsa.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestGbsa.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestGbsa.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestGbsa.dir/depend.internal". Scanning dependencies of target TestGbsa make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestGbsa.dir/build.make tests/CMakeFiles/TestGbsa.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 45%] Building CXX object tests/CMakeFiles/TestGbsa.dir/TestGbsa.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestGbsa.dir/TestGbsa.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestGbsa.cpp" [ 45%] Linking CXX executable ../TestVelocityRescalingThermostat cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVelocityRescalingThermostat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestVelocityRescalingThermostat.dir/TestVelocityRescalingThermostat.cpp.o -o ../TestVelocityRescalingThermostat -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 45%] Built target TestVelocityRescalingThermostat make -f tests/CMakeFiles/TestGetAtomName.dir/build.make tests/CMakeFiles/TestGetAtomName.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestGetAtomName.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestGetAtomName.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestGetAtomName.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestGetAtomName.dir/depend.internal". Scanning dependencies of target TestGetAtomName make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestGetAtomName.dir/build.make tests/CMakeFiles/TestGetAtomName.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 46%] Building CXX object tests/CMakeFiles/TestGetAtomName.dir/TestGetAtomName.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestGetAtomName.dir/TestGetAtomName.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestGetAtomName.cpp" [ 47%] Linking CXX executable ../TestShortPdbLines cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestShortPdbLines.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestShortPdbLines.dir/TestShortPdbLines.cpp.o -o ../TestShortPdbLines -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 47%] Built target TestShortPdbLines make -f tests/CMakeFiles/TestProteinDihedrals.dir/build.make tests/CMakeFiles/TestProteinDihedrals.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestProteinDihedrals.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestProteinDihedrals.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestProteinDihedrals.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestProteinDihedrals.dir/depend.internal". Scanning dependencies of target TestProteinDihedrals make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestProteinDihedrals.dir/build.make tests/CMakeFiles/TestProteinDihedrals.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 47%] Building CXX object tests/CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestProteinDihedrals.cpp" [ 48%] Linking CXX executable ../TestGbsa cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestGbsa.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestGbsa.dir/TestGbsa.cpp.o -o ../TestGbsa -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 48%] Built target TestGbsa make -f tests/CMakeFiles/TestDuMMForces.dir/build.make tests/CMakeFiles/TestDuMMForces.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestDuMMForces.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestDuMMForces.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestDuMMForces.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestDuMMForces.dir/depend.internal". Scanning dependencies of target TestDuMMForces make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestDuMMForces.dir/build.make tests/CMakeFiles/TestDuMMForces.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 48%] Building CXX object tests/CMakeFiles/TestDuMMForces.dir/TestDuMMForces.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestDuMMForces.dir/TestDuMMForces.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestDuMMForces.cpp" [ 49%] Linking CXX executable ../TestProteinDihedrals cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestProteinDihedrals.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o -o ../TestProteinDihedrals -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 [ 50%] Linking CXX executable ../TestGetAtomName cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestGetAtomName.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestGetAtomName.dir/TestGetAtomName.cpp.o -o ../TestGetAtomName -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 50%] Built target TestGetAtomName make -f tests/CMakeFiles/TestForeignBodyIds.dir/build.make tests/CMakeFiles/TestForeignBodyIds.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestForeignBodyIds.dir/DependInfo.cmake" --color= [ 50%] Built target TestProteinDihedrals make -f tests/CMakeFiles/TestRna.dir/build.make tests/CMakeFiles/TestRna.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestRna.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestForeignBodyIds.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestForeignBodyIds.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestForeignBodyIds.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestRna.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestRna.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestRna.dir/depend.internal". Scanning dependencies of target TestForeignBodyIds make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestForeignBodyIds.dir/build.make tests/CMakeFiles/TestForeignBodyIds.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' Scanning dependencies of target TestRna make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestRna.dir/build.make tests/CMakeFiles/TestRna.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 51%] Building CXX object tests/CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestForeignBodyIds.cpp" [ 51%] Building CXX object tests/CMakeFiles/TestRna.dir/TestRna.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestRna.dir/TestRna.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestRna.cpp" [ 52%] Linking CXX executable ../TestDuMMForces cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestDuMMForces.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestDuMMForces.dir/TestDuMMForces.cpp.o -o ../TestDuMMForces -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 52%] Built target TestDuMMForces make -f tests/CMakeFiles/TestLoneAtomCoordinates.dir/build.make tests/CMakeFiles/TestLoneAtomCoordinates.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestLoneAtomCoordinates.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestLoneAtomCoordinates.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestLoneAtomCoordinates.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestLoneAtomCoordinates.dir/depend.internal". Scanning dependencies of target TestLoneAtomCoordinates make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestLoneAtomCoordinates.dir/build.make tests/CMakeFiles/TestLoneAtomCoordinates.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 53%] Building CXX object tests/CMakeFiles/TestLoneAtomCoordinates.dir/TestLoneAtomCoordinates.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestLoneAtomCoordinates.dir/TestLoneAtomCoordinates.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestLoneAtomCoordinates.cpp" [ 54%] Linking CXX executable ../TestForeignBodyIds cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestForeignBodyIds.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o -o ../TestForeignBodyIds -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 54%] Built target TestForeignBodyIds make -f tests/CMakeFiles/TestCompoundTransforms.dir/build.make tests/CMakeFiles/TestCompoundTransforms.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestCompoundTransforms.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestCompoundTransforms.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestCompoundTransforms.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestCompoundTransforms.dir/depend.internal". Scanning dependencies of target TestCompoundTransforms make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestCompoundTransforms.dir/build.make tests/CMakeFiles/TestCompoundTransforms.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 55%] Building CXX object tests/CMakeFiles/TestCompoundTransforms.dir/TestCompoundTransforms.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestCompoundTransforms.dir/TestCompoundTransforms.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestCompoundTransforms.cpp" [ 56%] Linking CXX executable ../TestRna cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestRna.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestRna.dir/TestRna.cpp.o -o ../TestRna -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 56%] Built target TestRna make -f tests/CMakeFiles/TestProtein.dir/build.make tests/CMakeFiles/TestProtein.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestProtein.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestProtein.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestProtein.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestProtein.dir/depend.internal". Scanning dependencies of target TestProtein make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestProtein.dir/build.make tests/CMakeFiles/TestProtein.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 57%] Building CXX object tests/CMakeFiles/TestProtein.dir/TestProtein.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestProtein.dir/TestProtein.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestProtein.cpp" [ 57%] Linking CXX executable ../TestLoneAtomCoordinates cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestLoneAtomCoordinates.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestLoneAtomCoordinates.dir/TestLoneAtomCoordinates.cpp.o -o ../TestLoneAtomCoordinates -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 57%] Built target TestLoneAtomCoordinates make -f tests/CMakeFiles/TestBiotypeSelfCode.dir/build.make tests/CMakeFiles/TestBiotypeSelfCode.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestBiotypeSelfCode.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestBiotypeSelfCode.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestBiotypeSelfCode.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestBiotypeSelfCode.dir/depend.internal". Scanning dependencies of target TestBiotypeSelfCode make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestBiotypeSelfCode.dir/build.make tests/CMakeFiles/TestBiotypeSelfCode.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 58%] Building CXX object tests/CMakeFiles/TestBiotypeSelfCode.dir/TestBiotypeSelfCode.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestBiotypeSelfCode.dir/TestBiotypeSelfCode.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestBiotypeSelfCode.cpp" [ 59%] Linking CXX executable ../TestCompoundTransforms cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCompoundTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestCompoundTransforms.dir/TestCompoundTransforms.cpp.o -o ../TestCompoundTransforms -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 59%] Built target TestCompoundTransforms make -f tests/CMakeFiles/TestWriteDefaultPdb.dir/build.make tests/CMakeFiles/TestWriteDefaultPdb.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestWriteDefaultPdb.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestWriteDefaultPdb.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestWriteDefaultPdb.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestWriteDefaultPdb.dir/depend.internal". Scanning dependencies of target TestWriteDefaultPdb make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestWriteDefaultPdb.dir/build.make tests/CMakeFiles/TestWriteDefaultPdb.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 60%] Building CXX object tests/CMakeFiles/TestWriteDefaultPdb.dir/TestWriteDefaultPdb.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestWriteDefaultPdb.dir/TestWriteDefaultPdb.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestWriteDefaultPdb.cpp" [ 61%] Linking CXX executable ../TestProtein cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestProtein.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestProtein.dir/TestProtein.cpp.o -o ../TestProtein -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 61%] Built target TestProtein make -f tests/CMakeFiles/TestEthane.dir/build.make tests/CMakeFiles/TestEthane.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestEthane.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestEthane.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestEthane.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestEthane.dir/depend.internal". Scanning dependencies of target TestEthane make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestEthane.dir/build.make tests/CMakeFiles/TestEthane.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 62%] Building CXX object tests/CMakeFiles/TestEthane.dir/TestEthane.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestEthane.dir/TestEthane.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestEthane.cpp" [ 63%] Linking CXX executable ../TestBiotypeSelfCode cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestBiotypeSelfCode.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestBiotypeSelfCode.dir/TestBiotypeSelfCode.cpp.o -o ../TestBiotypeSelfCode -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 63%] Built target TestBiotypeSelfCode make -f tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/build.make tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/depend.internal". Scanning dependencies of target TestLoadVariantRnaAtomNames make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/build.make tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 63%] Building CXX object tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/TestLoadVariantRnaAtomNames.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestLoadVariantRnaAtomNames.dir/TestLoadVariantRnaAtomNames.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestLoadVariantRnaAtomNames.cpp" [ 64%] Linking CXX executable ../TestWriteDefaultPdb cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestWriteDefaultPdb.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestWriteDefaultPdb.dir/TestWriteDefaultPdb.cpp.o -o ../TestWriteDefaultPdb -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 64%] Built target TestWriteDefaultPdb make -f tests/CMakeFiles/TestBiopolymer.dir/build.make tests/CMakeFiles/TestBiopolymer.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestBiopolymer.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestBiopolymer.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestBiopolymer.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestBiopolymer.dir/depend.internal". Scanning dependencies of target TestBiopolymer make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestBiopolymer.dir/build.make tests/CMakeFiles/TestBiopolymer.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 65%] Building CXX object tests/CMakeFiles/TestBiopolymer.dir/TestBiopolymer.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestBiopolymer.dir/TestBiopolymer.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestBiopolymer.cpp" [ 65%] Linking CXX executable ../TestEthane cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestEthane.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestEthane.dir/TestEthane.cpp.o -o ../TestEthane -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 66%] Linking CXX executable ../TestLoadVariantRnaAtomNames cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestLoadVariantRnaAtomNames.dir/link.txt --verbose=1 [ 66%] Built target TestEthane make -f tests/CMakeFiles/TestBodyIds.dir/build.make tests/CMakeFiles/TestBodyIds.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestBodyIds.dir/DependInfo.cmake" --color= /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestLoadVariantRnaAtomNames.dir/TestLoadVariantRnaAtomNames.cpp.o -o ../TestLoadVariantRnaAtomNames -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestBodyIds.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestBodyIds.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestBodyIds.dir/depend.internal". Scanning dependencies of target TestBodyIds make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestBodyIds.dir/build.make tests/CMakeFiles/TestBodyIds.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 66%] Building CXX object tests/CMakeFiles/TestBodyIds.dir/TestBodyIds.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestBodyIds.dir/TestBodyIds.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestBodyIds.cpp" make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 66%] Built target TestLoadVariantRnaAtomNames make -f tests/CMakeFiles/TestAtomTargetLocations.dir/build.make tests/CMakeFiles/TestAtomTargetLocations.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestAtomTargetLocations.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestAtomTargetLocations.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestAtomTargetLocations.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestAtomTargetLocations.dir/depend.internal". Scanning dependencies of target TestAtomTargetLocations make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestAtomTargetLocations.dir/build.make tests/CMakeFiles/TestAtomTargetLocations.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 67%] Building CXX object tests/CMakeFiles/TestAtomTargetLocations.dir/TestAtomTargetLocations.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestAtomTargetLocations.dir/TestAtomTargetLocations.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestAtomTargetLocations.cpp" [ 67%] Linking CXX executable ../TestBiopolymer cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestBiopolymer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestBiopolymer.dir/TestBiopolymer.cpp.o -o ../TestBiopolymer -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 67%] Built target TestBiopolymer make -f tests/CMakeFiles/TestMethaneCartesian.dir/build.make tests/CMakeFiles/TestMethaneCartesian.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestMethaneCartesian.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestMethaneCartesian.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestMethaneCartesian.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestMethaneCartesian.dir/depend.internal". Scanning dependencies of target TestMethaneCartesian make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestMethaneCartesian.dir/build.make tests/CMakeFiles/TestMethaneCartesian.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 68%] Building CXX object tests/CMakeFiles/TestMethaneCartesian.dir/TestMethaneCartesian.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestMethaneCartesian.dir/TestMethaneCartesian.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestMethaneCartesian.cpp" [ 69%] Linking CXX executable ../TestBodyIds cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestBodyIds.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestBodyIds.dir/TestBodyIds.cpp.o -o ../TestBodyIds -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 69%] Built target TestBodyIds make -f tests/CMakeFiles/TestPartitionerDihedrals.dir/build.make tests/CMakeFiles/TestPartitionerDihedrals.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestPartitionerDihedrals.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestPartitionerDihedrals.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestPartitionerDihedrals.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestPartitionerDihedrals.dir/depend.internal". Scanning dependencies of target TestPartitionerDihedrals make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestPartitionerDihedrals.dir/build.make tests/CMakeFiles/TestPartitionerDihedrals.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 70%] Building CXX object tests/CMakeFiles/TestPartitionerDihedrals.dir/TestPartitionerDihedrals.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestPartitionerDihedrals.dir/TestPartitionerDihedrals.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestPartitionerDihedrals.cpp" [ 71%] Linking CXX executable ../TestAtomTargetLocations cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestAtomTargetLocations.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestAtomTargetLocations.dir/TestAtomTargetLocations.cpp.o -o ../TestAtomTargetLocations -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 71%] Built target TestAtomTargetLocations make -f tests/CMakeFiles/TestSetTorsion.dir/build.make tests/CMakeFiles/TestSetTorsion.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestSetTorsion.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestSetTorsion.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestSetTorsion.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestSetTorsion.dir/depend.internal". Scanning dependencies of target TestSetTorsion make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestSetTorsion.dir/build.make tests/CMakeFiles/TestSetTorsion.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 72%] Building CXX object tests/CMakeFiles/TestSetTorsion.dir/TestSetTorsion.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestSetTorsion.dir/TestSetTorsion.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestSetTorsion.cpp" [ 73%] Linking CXX executable ../TestMethaneCartesian cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestMethaneCartesian.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestMethaneCartesian.dir/TestMethaneCartesian.cpp.o -o ../TestMethaneCartesian -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 73%] Built target TestMethaneCartesian make -f tests/CMakeFiles/TestNoseHooverThermostat.dir/build.make tests/CMakeFiles/TestNoseHooverThermostat.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestNoseHooverThermostat.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestNoseHooverThermostat.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestNoseHooverThermostat.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestNoseHooverThermostat.dir/depend.internal". Scanning dependencies of target TestNoseHooverThermostat make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestNoseHooverThermostat.dir/build.make tests/CMakeFiles/TestNoseHooverThermostat.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 73%] Building CXX object tests/CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestNoseHooverThermostat.cpp" [ 74%] Linking CXX executable ../TestPartitionerDihedrals cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestPartitionerDihedrals.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestPartitionerDihedrals.dir/TestPartitionerDihedrals.cpp.o -o ../TestPartitionerDihedrals -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 74%] Built target TestPartitionerDihedrals make -f tests/CMakeFiles/TestNucleotide2.dir/build.make tests/CMakeFiles/TestNucleotide2.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestNucleotide2.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestNucleotide2.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestNucleotide2.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestNucleotide2.dir/depend.internal". Scanning dependencies of target TestNucleotide2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestNucleotide2.dir/build.make tests/CMakeFiles/TestNucleotide2.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 75%] Building CXX object tests/CMakeFiles/TestNucleotide2.dir/TestNucleotide2.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestNucleotide2.dir/TestNucleotide2.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestNucleotide2.cpp" [ 76%] Linking CXX executable ../TestSetTorsion cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSetTorsion.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSetTorsion.dir/TestSetTorsion.cpp.o -o ../TestSetTorsion -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 76%] Built target TestSetTorsion make -f tests/CMakeFiles/TestRiboseMobilizer.dir/build.make tests/CMakeFiles/TestRiboseMobilizer.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestRiboseMobilizer.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestRiboseMobilizer.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestRiboseMobilizer.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestRiboseMobilizer.dir/depend.internal". Scanning dependencies of target TestRiboseMobilizer make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestRiboseMobilizer.dir/build.make tests/CMakeFiles/TestRiboseMobilizer.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 77%] Building CXX object tests/CMakeFiles/TestRiboseMobilizer.dir/TestRiboseMobilizer.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestRiboseMobilizer.dir/TestRiboseMobilizer.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestRiboseMobilizer.cpp" [ 78%] Linking CXX executable ../TestNoseHooverThermostat cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestNoseHooverThermostat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o -o ../TestNoseHooverThermostat -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 78%] Built target TestNoseHooverThermostat make -f tests/CMakeFiles/TestMethanol.dir/build.make tests/CMakeFiles/TestMethanol.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestMethanol.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestMethanol.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestMethanol.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestMethanol.dir/depend.internal". Scanning dependencies of target TestMethanol make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestMethanol.dir/build.make tests/CMakeFiles/TestMethanol.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 79%] Building CXX object tests/CMakeFiles/TestMethanol.dir/TestMethanol.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestMethanol.dir/TestMethanol.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestMethanol.cpp" [ 80%] Linking CXX executable ../TestNucleotide2 cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestNucleotide2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestNucleotide2.dir/TestNucleotide2.cpp.o -o ../TestNucleotide2 -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 80%] Built target TestNucleotide2 make -f tests/CMakeFiles/TestOxygenMolecule.dir/build.make tests/CMakeFiles/TestOxygenMolecule.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestOxygenMolecule.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestOxygenMolecule.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestOxygenMolecule.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestOxygenMolecule.dir/depend.internal". Scanning dependencies of target TestOxygenMolecule make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestOxygenMolecule.dir/build.make tests/CMakeFiles/TestOxygenMolecule.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 80%] Building CXX object tests/CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestOxygenMolecule.cpp" In file included from /usr/include/c++/10/vector:72, from /usr/include/simbody/SimTKcommon/internal/Array.h:39, from /usr/include/simbody/SimTKcommon/basics.h:53, from /usr/include/simbody/SimTKcommon.h:32, from /usr/include/simbody/Simbody.h:38, from /build/molmodel-3.0~svn842/./include/SimTKmolmodel.h:47, from /build/molmodel-3.0~svn842/tests/TestRiboseMobilizer.cpp:1: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'virtual void PeriodicTorsionMeasurer::handleEvent(const SimTK::State&) const': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 81%] Linking CXX executable ../TestRiboseMobilizer cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestRiboseMobilizer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestRiboseMobilizer.dir/TestRiboseMobilizer.cpp.o -o ../TestRiboseMobilizer -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 81%] Built target TestRiboseMobilizer make -f tests/CMakeFiles/TestPartitioner.dir/build.make tests/CMakeFiles/TestPartitioner.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestPartitioner.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestPartitioner.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestPartitioner.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestPartitioner.dir/depend.internal". Scanning dependencies of target TestPartitioner make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestPartitioner.dir/build.make tests/CMakeFiles/TestPartitioner.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 82%] Building CXX object tests/CMakeFiles/TestPartitioner.dir/TestPartitioner.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestPartitioner.dir/TestPartitioner.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestPartitioner.cpp" [ 82%] Linking CXX executable ../TestMethanol cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestMethanol.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestMethanol.dir/TestMethanol.cpp.o -o ../TestMethanol -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 82%] Built target TestMethanol make -f tests/CMakeFiles/TestFitMagnesiums.dir/build.make tests/CMakeFiles/TestFitMagnesiums.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestFitMagnesiums.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestFitMagnesiums.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestFitMagnesiums.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestFitMagnesiums.dir/depend.internal". Scanning dependencies of target TestFitMagnesiums make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestFitMagnesiums.dir/build.make tests/CMakeFiles/TestFitMagnesiums.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 83%] Building CXX object tests/CMakeFiles/TestFitMagnesiums.dir/TestFitMagnesiums.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestFitMagnesiums.dir/TestFitMagnesiums.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestFitMagnesiums.cpp" [ 84%] Linking CXX executable ../TestOxygenMolecule cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestOxygenMolecule.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o -o ../TestOxygenMolecule -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 84%] Built target TestOxygenMolecule make -f tests/CMakeFiles/TestPositiveControl.dir/build.make tests/CMakeFiles/TestPositiveControl.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestPositiveControl.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestPositiveControl.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestPositiveControl.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestPositiveControl.dir/depend.internal". Scanning dependencies of target TestPositiveControl make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestPositiveControl.dir/build.make tests/CMakeFiles/TestPositiveControl.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 85%] Building CXX object tests/CMakeFiles/TestPositiveControl.dir/TestPositiveControl.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestPositiveControl.dir/TestPositiveControl.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestPositiveControl.cpp" [ 85%] Linking CXX executable ../TestPositiveControl cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestPositiveControl.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestPositiveControl.dir/TestPositiveControl.cpp.o -o ../TestPositiveControl -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 85%] Built target TestPositiveControl make -f tests/CMakeFiles/TestMgSolvationEnergy.dir/build.make tests/CMakeFiles/TestMgSolvationEnergy.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestMgSolvationEnergy.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestMgSolvationEnergy.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestMgSolvationEnergy.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestMgSolvationEnergy.dir/depend.internal". Scanning dependencies of target TestMgSolvationEnergy make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestMgSolvationEnergy.dir/build.make tests/CMakeFiles/TestMgSolvationEnergy.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 86%] Building CXX object tests/CMakeFiles/TestMgSolvationEnergy.dir/TestMgSolvationEnergy.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestMgSolvationEnergy.dir/TestMgSolvationEnergy.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestMgSolvationEnergy.cpp" [ 86%] Linking CXX executable ../TestPartitioner cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestPartitioner.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestPartitioner.dir/TestPartitioner.cpp.o -o ../TestPartitioner -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 [ 86%] Linking CXX executable ../TestFitMagnesiums cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestFitMagnesiums.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestFitMagnesiums.dir/TestFitMagnesiums.cpp.o -o ../TestFitMagnesiums -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 86%] Built target TestPartitioner make -f tests/CMakeFiles/TestSanityDuMM.dir/build.make tests/CMakeFiles/TestSanityDuMM.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestSanityDuMM.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestSanityDuMM.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestSanityDuMM.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestSanityDuMM.dir/depend.internal". Scanning dependencies of target TestSanityDuMM make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestSanityDuMM.dir/build.make tests/CMakeFiles/TestSanityDuMM.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 87%] Building CXX object tests/CMakeFiles/TestSanityDuMM.dir/TestSanityDuMM.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestSanityDuMM.dir/TestSanityDuMM.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestSanityDuMM.cpp" make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 87%] Built target TestFitMagnesiums make -f tests/CMakeFiles/TestSerine.dir/build.make tests/CMakeFiles/TestSerine.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestSerine.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestSerine.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestSerine.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestSerine.dir/depend.internal". Scanning dependencies of target TestSerine make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestSerine.dir/build.make tests/CMakeFiles/TestSerine.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 88%] Building CXX object tests/CMakeFiles/TestSerine.dir/TestSerine.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestSerine.dir/TestSerine.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestSerine.cpp" [ 89%] Linking CXX executable ../TestMgSolvationEnergy cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestMgSolvationEnergy.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestMgSolvationEnergy.dir/TestMgSolvationEnergy.cpp.o -o ../TestMgSolvationEnergy -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 89%] Built target TestMgSolvationEnergy make -f tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/build.make tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests/adhoc" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/depend.internal". Scanning dependencies of target RemoveMassCenterDrift make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/build.make tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 90%] Building CXX object tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/RemoveMassCenterDrift.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/RemoveMassCenterDrift.dir/RemoveMassCenterDrift.cpp.o -c "/build/molmodel-3.0~svn842/tests/adhoc/RemoveMassCenterDrift.cpp" [ 90%] Linking CXX executable ../TestSanityDuMM cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSanityDuMM.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSanityDuMM.dir/TestSanityDuMM.cpp.o -o ../TestSanityDuMM -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 90%] Built target TestSanityDuMM make -f tests/adhoc/CMakeFiles/TestSimpleProtein.dir/build.make tests/adhoc/CMakeFiles/TestSimpleProtein.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests/adhoc" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestSimpleProtein.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestSimpleProtein.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestSimpleProtein.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestSimpleProtein.dir/depend.internal". Scanning dependencies of target TestSimpleProtein make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/adhoc/CMakeFiles/TestSimpleProtein.dir/build.make tests/adhoc/CMakeFiles/TestSimpleProtein.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 91%] Building CXX object tests/adhoc/CMakeFiles/TestSimpleProtein.dir/TestSimpleProtein.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestSimpleProtein.dir/TestSimpleProtein.cpp.o -c "/build/molmodel-3.0~svn842/tests/adhoc/TestSimpleProtein.cpp" [ 92%] Linking CXX executable ../TestSerine cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerine.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSerine.dir/TestSerine.cpp.o -o ../TestSerine -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 92%] Built target TestSerine make -f tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/build.make tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests/adhoc" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/depend.internal". Scanning dependencies of target RemoveMassCenterDriftWithOptimizer make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/build.make tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 92%] Building CXX object tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/RemoveMassCenterDriftWithOptimizer.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/RemoveMassCenterDriftWithOptimizer.cpp.o -c "/build/molmodel-3.0~svn842/tests/adhoc/RemoveMassCenterDriftWithOptimizer.cpp" [ 93%] Linking CXX executable ../../RemoveMassCenterDrift cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/RemoveMassCenterDrift.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/RemoveMassCenterDrift.dir/RemoveMassCenterDrift.cpp.o -o ../../RemoveMassCenterDrift -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 93%] Built target RemoveMassCenterDrift make -f tests/adhoc/CMakeFiles/TestSerineWithViz.dir/build.make tests/adhoc/CMakeFiles/TestSerineWithViz.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests/adhoc" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestSerineWithViz.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestSerineWithViz.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestSerineWithViz.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestSerineWithViz.dir/depend.internal". Scanning dependencies of target TestSerineWithViz make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/adhoc/CMakeFiles/TestSerineWithViz.dir/build.make tests/adhoc/CMakeFiles/TestSerineWithViz.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 94%] Building CXX object tests/adhoc/CMakeFiles/TestSerineWithViz.dir/TestSerineWithViz.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestSerineWithViz.dir/TestSerineWithViz.cpp.o -c "/build/molmodel-3.0~svn842/tests/adhoc/TestSerineWithViz.cpp" [ 95%] Linking CXX executable ../../TestSimpleProtein cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSimpleProtein.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSimpleProtein.dir/TestSimpleProtein.cpp.o -o ../../TestSimpleProtein -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 95%] Built target TestSimpleProtein make -f tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/build.make tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests/adhoc" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/depend.internal". Scanning dependencies of target TestWriteLargerPdb make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/build.make tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 95%] Building CXX object tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/TestWriteLargerPdb.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestWriteLargerPdb.dir/TestWriteLargerPdb.cpp.o -c "/build/molmodel-3.0~svn842/tests/adhoc/TestWriteLargerPdb.cpp" [ 96%] Linking CXX executable ../../RemoveMassCenterDriftWithOptimizer cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/RemoveMassCenterDriftWithOptimizer.cpp.o -o ../../RemoveMassCenterDriftWithOptimizer -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 96%] Built target RemoveMassCenterDriftWithOptimizer make -f tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/build.make tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests/adhoc" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/depend.internal". Scanning dependencies of target TestEthaneFromSimbody make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/build.make tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 97%] Building CXX object tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/TestEthaneFromSimbody.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestEthaneFromSimbody.dir/TestEthaneFromSimbody.cpp.o -c "/build/molmodel-3.0~svn842/tests/adhoc/TestEthaneFromSimbody.cpp" [ 97%] Linking CXX executable ../../TestSerineWithViz cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerineWithViz.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSerineWithViz.dir/TestSerineWithViz.cpp.o -o ../../TestSerineWithViz -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 97%] Built target TestSerineWithViz make -f tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/build.make tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests/adhoc" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/depend.internal". Scanning dependencies of target TestSodiumWithViz make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/build.make tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 97%] Building CXX object tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/TestSodiumWithViz.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestSodiumWithViz.dir/TestSodiumWithViz.cpp.o -c "/build/molmodel-3.0~svn842/tests/adhoc/TestSodiumWithViz.cpp" [ 98%] Linking CXX executable ../../TestWriteLargerPdb cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestWriteLargerPdb.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestWriteLargerPdb.dir/TestWriteLargerPdb.cpp.o -o ../../TestWriteLargerPdb -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 98%] Built target TestWriteLargerPdb [ 99%] Linking CXX executable ../../TestEthaneFromSimbody cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestEthaneFromSimbody.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestEthaneFromSimbody.dir/TestEthaneFromSimbody.cpp.o -o ../../TestEthaneFromSimbody -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 99%] Built target TestEthaneFromSimbody [100%] Linking CXX executable ../../TestSodiumWithViz cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSodiumWithViz.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSodiumWithViz.dir/TestSodiumWithViz.cpp.o -o ../../TestSodiumWithViz -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [100%] Built target TestSodiumWithViz make[2]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/CMakeFiles" 0 make[1]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/molmodel-3.0\~svn842/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' /usr/bin/cmake -S"/build/molmodel-3.0~svn842" -B"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/doc/api/Molmodel/html -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/doc/MolmodelAPI.html -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/Molmodel.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/SimTKmolmodel.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/AtomSubsystem.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/Biotype.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/Clonable.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/Compound.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/CompoundModeler.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/CompoundSystem.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/DNA.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/DuMMForceFieldSubsystem.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/Element.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/GrinPointer.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/Ions.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/Ligands.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/MassCenterMotionRemover.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/MolecularMechanicsSystem.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/NA.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/NoseHooverThermostat.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/PDBReader.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/Pdb.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/PeriodicPdbWriter.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/PeriodicVmdReporter.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/Protein.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/RNA.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/RiboseMobilizer.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/Superpose.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/VanDerWaalsForce.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/VanderWallSphere.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/VelocityRescalingThermostat.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/VmdConnection.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/VoxelHash.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/Water.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/bondGeometry.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/common.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/units.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/doc/MolmodelUsersGuide.pdf -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/lib/libSimTKmolmodel.so.3.0 -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/lib/libSimTKmolmodel.so -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleAdenylateMobilitiesVMD -- Set runtime path of "/build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleAdenylateMobilitiesVMD" to "" -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleAdenylateMobilitiesViz -- Set runtime path of "/build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleAdenylateMobilitiesViz" to "" -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleCreatePropane -- Set runtime path of "/build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleCreatePropane" to "" -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleFoldPolyalanine -- Set runtime path of "/build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleFoldPolyalanine" to "" -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleLoadPdb -- Set runtime path of "/build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleLoadPdb" to "" -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleLoadPdb2 -- Set runtime path of "/build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleLoadPdb2" to "" -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleRigidProtein -- Set runtime path of "/build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleRigidProtein" to "" -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleSimpleProtein -- Set runtime path of "/build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleSimpleProtein" to "" -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleSimpleRNA -- Set runtime path of "/build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleSimpleRNA" to "" -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleTwoArgonAtoms -- Set runtime path of "/build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleTwoArgonAtoms" to "" -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleTwoEthanes -- Set runtime path of "/build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleTwoEthanes" to "" -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/MolmodelInstallTest -- Set runtime path of "/build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/MolmodelInstallTest" to "" -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/MolmodelInstallTestNoViz -- Set runtime path of "/build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/MolmodelInstallTestNoViz" to "" -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/1AKG.pdb -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/1AKG.pdb -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/1AKGtrim.pdb -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/1AKGtrim.pdb -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/ThreeAdenylates.pdb -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ThreeAdenylates.pdb -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/adenylates.vmd -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/adenylates.vmd -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/ExampleAdenylateMobilitiesVMD.cpp -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/ExampleAdenylateMobilitiesViz.cpp -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/ExampleCreatePropane.cpp -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/ExampleFoldPolyalanine.cpp -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/ExampleLoadPdb.cpp -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/ExampleLoadPdb2.cpp -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/ExampleRigidProtein.cpp -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/ExampleSimpleProtein.cpp -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/ExampleSimpleRNA.cpp -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/ExampleTwoArgonAtoms.cpp -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/ExampleTwoEthanes.cpp -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/MolmodelInstallTest.cpp -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/MolmodelInstallTestNoViz.cpp -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/ExampleAdenylateMobilitiesVMD_Notes.txt -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/README.txt -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/README_Makefile.txt -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/README_VisualStudio.txt -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/CMakeLists.txt -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/Makefile make[1]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' debian/rules override_dh_install make[1]: Entering directory '/build/molmodel-3.0~svn842' dh_install dh_install -plibsimtkmolmodel3.0 debian/tmp/usr/lib/libSimTKmolmodel.so.* usr/lib/arm-linux-gnueabihf dh_install -plibsimtkmolmodel-dev debian/tmp/usr/lib/libSimTKmolmodel.so usr/lib/arm-linux-gnueabihf rm -rf debian/tmp/usr/examples # not installing examples for now make[1]: Leaving directory '/build/molmodel-3.0~svn842' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libsimtkmolmodel3.0/usr/lib/arm-linux-gnueabihf/libSimTKmolmodel.so.3.0 found in none of the libraries dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libsimtkmolmodel-dev' in '../libsimtkmolmodel-dev_3.0~svn842-2_armhf.deb'. dpkg-deb: building package 'libsimtkmolmodel3.0' in '../libsimtkmolmodel3.0_3.0~svn842-2_armhf.deb'. dpkg-deb: building package 'libsimtkmolmodel3.0-dbgsym' in '../libsimtkmolmodel3.0-dbgsym_3.0~svn842-2_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../molmodel_3.0~svn842-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3804 and its subdirectories I: Current time: Mon Jul 12 11:05:28 -12 2021 I: pbuilder-time-stamp: 1626131128 Mon Jul 12 23:06:47 UTC 2021 I: 1st build successful. Starting 2nd build on remote node jtx1b-armhf-rb.debian.net. Mon Jul 12 23:06:47 UTC 2021 I: Preparing to do remote build '2' on jtx1b-armhf-rb.debian.net. Mon Jul 12 23:24:50 UTC 2021 I: Deleting $TMPDIR on jtx1b-armhf-rb.debian.net. Mon Jul 12 23:24:52 UTC 2021 I: molmodel_3.0~svn842-2_armhf.changes: Format: 1.8 Date: Wed, 17 Jun 2020 07:21:24 -0400 Source: molmodel Binary: libsimtkmolmodel-dev libsimtkmolmodel3.0 libsimtkmolmodel3.0-dbgsym Architecture: armhf Version: 3.0~svn842-2 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Andrius Merkys Description: libsimtkmolmodel-dev - C++ API for creating molecular models for SimTK (development file libsimtkmolmodel3.0 - C++ API for creating molecular models for SimTK Changes: molmodel (3.0~svn842-2) unstable; urgency=medium . * Adding 'Rules-Requires-Root: no'. * Bumping debhelper-compat. * Not installing examples for now. * Installing docs. Checksums-Sha1: 38b83ab8cd4f7fa8ea749d803b64897e2ce7caf3 1858500 libsimtkmolmodel-dev_3.0~svn842-2_armhf.deb 6ac808d987409702f96338dd9e616aec7c9f4fe2 9516472 libsimtkmolmodel3.0-dbgsym_3.0~svn842-2_armhf.deb 3a864e14739fe7cc45e9f8cd1265bc5eb4301ff8 473016 libsimtkmolmodel3.0_3.0~svn842-2_armhf.deb aacc8472a5feda808ddf14511cac37351940f3bc 8411 molmodel_3.0~svn842-2_armhf.buildinfo Checksums-Sha256: 77cae47db250ac5c6572c3de53f8dae05638a2a91aab5672b660848eb5017907 1858500 libsimtkmolmodel-dev_3.0~svn842-2_armhf.deb 24acaf728eebec6aa970c05d2d0a9ee0beab5b823a77e4351cbf5937eea1abca 9516472 libsimtkmolmodel3.0-dbgsym_3.0~svn842-2_armhf.deb c0392294ab1aeaccdb5b2701875b74283a0e0b05d6627446e641e30f1708c21e 473016 libsimtkmolmodel3.0_3.0~svn842-2_armhf.deb 8040cfbc48dc9d8e39108567ece2523610130401b45b25527572f84eec010e74 8411 molmodel_3.0~svn842-2_armhf.buildinfo Files: 0f193ae6e8028c7af2479773d06771f2 1858500 libdevel optional libsimtkmolmodel-dev_3.0~svn842-2_armhf.deb 75cbce8db5dc4717ec9aee366ea997d2 9516472 debug optional libsimtkmolmodel3.0-dbgsym_3.0~svn842-2_armhf.deb 22f94f135a0544abb05d3940c739305e 473016 libs optional libsimtkmolmodel3.0_3.0~svn842-2_armhf.deb 6c427b4d59aee39e4a29f840992e0d6c 8411 libs optional molmodel_3.0~svn842-2_armhf.buildinfo Mon Jul 12 23:24:53 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.dTBFf4iJnp/molmodel_3.0~svn842-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.dTBFf4iJnp/molmodel_3.0~svn842-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.dTBFf4iJnp/molmodel_3.0~svn842-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.dTBFf4iJnp/b1/molmodel_3.0~svn842-2_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.dTBFf4iJnp/b2/molmodel_3.0~svn842-2_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.397s) 0.397s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.142s) 0.141s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Mon Jul 12 23:24:55 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Mon Jul 12 23:24:55 UTC 2021 I: molmodel from bullseye built successfully and reproducibly on armhf. Mon Jul 12 23:24:56 UTC 2021 I: Submitting .buildinfo files to external archives: Mon Jul 12 23:24:56 UTC 2021 I: Submitting 12K b1/molmodel_3.0~svn842-2_armhf.buildinfo.asc Mon Jul 12 23:24:57 UTC 2021 I: Submitting 12K b2/molmodel_3.0~svn842-2_armhf.buildinfo.asc Mon Jul 12 23:24:58 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Jul 12 23:24:58 UTC 2021 I: Done submitting .buildinfo files. Mon Jul 12 23:24:58 UTC 2021 I: Removing signed molmodel_3.0~svn842-2_armhf.buildinfo.asc files: removed './b1/molmodel_3.0~svn842-2_armhf.buildinfo.asc' removed './b2/molmodel_3.0~svn842-2_armhf.buildinfo.asc'