Tue Oct 5 15:42:48 UTC 2021 I: starting to build kmerresistance/bullseye/armhf on jenkins on '2021-10-05 15:42' Tue Oct 5 15:42:48 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_38/4375/console.log Tue Oct 5 15:42:48 UTC 2021 I: Downloading source for bullseye/kmerresistance=2.2.0-2 --2021-10-05 15:42:48-- http://cdn-fastly.deb.debian.org/debian/pool/main/k/kmerresistance/kmerresistance_2.2.0-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2021 (2.0K) Saving to: ‘kmerresistance_2.2.0-2.dsc’ 0K . 100% 133M=0s 2021-10-05 15:42:48 (133 MB/s) - ‘kmerresistance_2.2.0-2.dsc’ saved [2021/2021] Tue Oct 5 15:42:48 UTC 2021 I: kmerresistance_2.2.0-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: kmerresistance Binary: kmerresistance Architecture: any Version: 2.2.0-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://bitbucket.org/genomicepidemiology/kmerresistance Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/kmerresistance Vcs-Git: https://salsa.debian.org/med-team/kmerresistance.git Build-Depends: debhelper-compat (= 13) Package-List: kmerresistance deb science optional arch=any Checksums-Sha1: 397199d07733153e2fa0319de3dfd4f9f8e67b82 5668 kmerresistance_2.2.0.orig.tar.bz2 1880dca84cd1d28cc393a29c191c4c08febe3278 4060 kmerresistance_2.2.0-2.debian.tar.xz Checksums-Sha256: 16ba92368a38c223fda7ba642060e76987a2fd88cc58e5d826143b7ce533da22 5668 kmerresistance_2.2.0.orig.tar.bz2 b0fdf951e72f8eee55b0a6c4a3d4ad2a4abf4cd43ac7ce57d1298e53f0dbf763 4060 kmerresistance_2.2.0-2.debian.tar.xz Files: 0db86e2c377b890a2c14a4a16ae0e003 5668 kmerresistance_2.2.0.orig.tar.bz2 b0549aa92b939357d2733e27eaf3348f 4060 kmerresistance_2.2.0-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/LaWIRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHhiA/9Grl5EDu1kmUuNdo7ls/BIcS3i8NC0bpm uX2kWzX0F8rVFEBhUE7M3ZEuXjSujD+We9EKl4+oC8xPrquXFQCusR1VCfBummtU qTT2pNVyEmIygBd35nLMj8nGa96CXPgEXYdsG2Ef4Ud1N5P4oECzmp2E5LvqIuEm ofbKTBS4ywSOqwYnPx3BpXWhRpRvhQgJATQMwwZORTo7Sehq1+d2kpbkAKuaiqc0 23QNs3IwmqrKmpA9sGgAem256pLA5Rq3j63MAf/2AGuIUF6jYZ0gxylew6EfPnal AQMNal3LTOn5VnkVcR1kGQW6sdgS/YrbobK27uLX5YjaoSHHuSobURMDcOTqRe0Z LcY7iUMKAEJy+WT8RMzYAdsCnYwwVrGFda/qg0S5Vm7SYzE6lbcxQhlOq4pdI1So KdjrggggOF+iypiYPWPKfndT8J4zqk2Z3qe7s2rl4MVyv4C0gqFsxpJqVYwTImeD 0ROUBECGC5D+g90bHnwj2JyT8S1h/k/BrSW163r9+GLRCK0zGVyjsquj4Ij3k3dm f/MOUINYOZ2rWkbRa+PswlgflnrK57flKBBuiQEbdjy7xQUPCdQ1zYSmQYlD2Ul3 /04fUETsVoY76+Jz3ShpUv8ijXCIJcL5beIVPXzHQksMbSMxH72JYbzLhqv7lpHR dZDviGBZYLo= =a53+ -----END PGP SIGNATURE----- Tue Oct 5 15:42:48 UTC 2021 I: Checking whether the package is not for us Tue Oct 5 15:42:48 UTC 2021 I: Starting 1st build on remote node wbq0-armhf-rb.debian.net. Tue Oct 5 15:42:48 UTC 2021 I: Preparing to do remote build '1' on wbq0-armhf-rb.debian.net. Tue Oct 5 15:44:56 UTC 2021 I: Deleting $TMPDIR on wbq0-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Oct 5 03:42:56 -12 2021 I: pbuilder-time-stamp: 1633448576 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [kmerresistance_2.2.0-2.dsc] I: copying [./kmerresistance_2.2.0.orig.tar.bz2] I: copying [./kmerresistance_2.2.0-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.KuQ11GPk/trustedkeys.kbx': General error gpgv: Signature made Fri Dec 4 23:05:06 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./kmerresistance_2.2.0-2.dsc dpkg-source: info: extracting kmerresistance in kmerresistance-2.2.0 dpkg-source: info: unpacking kmerresistance_2.2.0.orig.tar.bz2 dpkg-source: info: unpacking kmerresistance_2.2.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/28670/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' DISTRIBUTION='' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='0de88ce73dff47e59838af3ae785c9b4' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='28670' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.3tPqeVvoUc/pbuilderrc_pePn --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.3tPqeVvoUc/b1 --logfile b1/build.log kmerresistance_2.2.0-2.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:8000/' I: uname -a Linux wbq0 5.10.0-8-armmp #1 SMP Debian 5.10.46-5 (2021-09-23) armv7l GNU/Linux I: ls -l /bin total 3580 -rwxr-xr-x 1 root root 816764 Aug 4 08:25 bash -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash -rwxr-xr-x 1 root root 75880 Sep 22 2020 date -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd -rwxr-xr-x 1 root root 59912 Sep 22 2020 df -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir -rwxr-xr-x 1 root root 55012 Jul 28 07:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 22496 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 47492 Jul 28 07:09 findmnt -rwsr-xr-x 1 root root 26076 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 64212 Mar 2 2021 gzip -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln -rwxr-xr-x 1 root root 35068 Feb 7 2020 login -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls -rwxr-xr-x 1 root root 99940 Jul 28 07:09 lsblk -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 34408 Jul 28 07:09 more -rwsr-xr-x 1 root root 34400 Jul 28 07:09 mount -rwxr-xr-x 1 root root 9824 Jul 28 07:09 mountpoint -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Sep 20 21:27 sh -> dash -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty -rwsr-xr-x 1 root root 46704 Jul 28 07:09 su -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync -rwxr-xr-x 1 root root 340872 Feb 16 2021 tar -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch -rwxr-xr-x 1 root root 22496 Sep 22 2020 true -rwxr-xr-x 1 root root 9636 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 22108 Jul 28 07:09 umount -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir -rwxr-xr-x 1 root root 38512 Jul 28 07:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/28670/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 17.7 MB of archives. After unpacking 62.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main armhf bsdextrautils armhf 2.36.1-8 [138 kB] Get: 2 http://deb.debian.org/debian bullseye/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 3 http://deb.debian.org/debian bullseye/main armhf groff-base armhf 1.22.4-6 [847 kB] Get: 4 http://deb.debian.org/debian bullseye/main armhf libpipeline1 armhf 1.5.3-1 [30.1 kB] Get: 5 http://deb.debian.org/debian bullseye/main armhf man-db armhf 2.9.4-2 [1319 kB] Get: 6 http://deb.debian.org/debian bullseye/main armhf sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB] Get: 8 http://deb.debian.org/debian bullseye/main armhf libmagic1 armhf 1:5.39-3 [117 kB] Get: 9 http://deb.debian.org/debian bullseye/main armhf file armhf 1:5.39-3 [68.1 kB] Get: 10 http://deb.debian.org/debian bullseye/main armhf gettext-base armhf 0.21-4 [171 kB] Get: 11 http://deb.debian.org/debian bullseye/main armhf libsigsegv2 armhf 2.13-1 [34.0 kB] Get: 12 http://deb.debian.org/debian bullseye/main armhf m4 armhf 1.4.18-5 [192 kB] Get: 13 http://deb.debian.org/debian bullseye/main armhf autoconf all 2.69-14 [313 kB] Get: 14 http://deb.debian.org/debian bullseye/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main armhf automake all 1:1.16.3-2 [814 kB] Get: 16 http://deb.debian.org/debian bullseye/main armhf autopoint all 0.21-4 [510 kB] Get: 17 http://deb.debian.org/debian bullseye/main armhf libdebhelper-perl all 13.3.4 [189 kB] Get: 18 http://deb.debian.org/debian bullseye/main armhf libtool all 2.4.6-15 [513 kB] Get: 19 http://deb.debian.org/debian bullseye/main armhf dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bullseye/main armhf libsub-override-perl all 0.09-2 [10.2 kB] Get: 22 http://deb.debian.org/debian bullseye/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 23 http://deb.debian.org/debian bullseye/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 24 http://deb.debian.org/debian bullseye/main armhf libelf1 armhf 0.183-1 [161 kB] Get: 25 http://deb.debian.org/debian bullseye/main armhf dwz armhf 0.13+20210201-1 [179 kB] Get: 26 http://deb.debian.org/debian bullseye/main armhf libicu67 armhf 67.1-7 [8319 kB] Get: 27 http://deb.debian.org/debian bullseye/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [602 kB] Get: 28 http://deb.debian.org/debian bullseye/main armhf gettext armhf 0.21-4 [1243 kB] Get: 29 http://deb.debian.org/debian bullseye/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 30 http://deb.debian.org/debian bullseye/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bullseye/main armhf debhelper all 13.3.4 [1049 kB] Fetched 17.7 MB in 9s (1986 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8_armhf.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../01-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_armhf.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../03-libpipeline1_1.5.3-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_armhf.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../05-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.39-3_armhf.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../07-libmagic1_1%3a5.39-3_armhf.deb ... Unpacking libmagic1:armhf (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.39-3_armhf.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../09-gettext-base_0.21-4_armhf.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../10-libsigsegv2_2.13-1_armhf.deb ... Unpacking libsigsegv2:armhf (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.18-5_armhf.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../23-libelf1_0.183-1_armhf.deb ... Unpacking libelf1:armhf (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.13+20210201-1_armhf.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:armhf. Preparing to unpack .../25-libicu67_67.1-7_armhf.deb ... Unpacking libicu67:armhf (67.1-7) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../26-libxml2_2.9.10+dfsg-6.7_armhf.deb ... Unpacking libxml2:armhf (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-4_armhf.deb ... Unpacking gettext (0.21-4) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/kmerresistance-2.2.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kmerresistance_2.2.0-2_source.changes dpkg-buildpackage: info: source package kmerresistance dpkg-buildpackage: info: source version 2.2.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_auto_clean make -j3 clean make[1]: Entering directory '/build/kmerresistance-2.2.0' rm -f kmerresistance pherror.o qseqs.o make[1]: Leaving directory '/build/kmerresistance-2.2.0' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j3 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/kmerresistance-2.2.0' cc -g -O2 -fdebug-prefix-map=/build/kmerresistance-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pherror.o pherror.c cc -g -O2 -fdebug-prefix-map=/build/kmerresistance-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qseqs.o qseqs.c cc -g -O2 -fdebug-prefix-map=/build/kmerresistance-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -o kmerresistance KmerResistance.c pherror.o qseqs.o -lm -Wl,-z,relro -Wl,-z,now KmerResistance.c: In function 'main': KmerResistance.c:278:2: warning: 'sprintf' argument 3 overlaps destination object 'KMA_call' [-Wrestrict] 278 | sprintf(KMA_call, "%s%s", KMA_call, t_db); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ KmerResistance.c:287:2: warning: 'sprintf' argument 3 overlaps destination object 'KMA_call' [-Wrestrict] 287 | sprintf(KMA_call, "%s%s -Sparse", KMA_call, s_db); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ KmerResistance.c:310:2: warning: 'out_len' may be used uninitialized in this function [-Wmaybe-uninitialized] 310 | strcpy((outputfilename + out_len), ".spa"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/build/kmerresistance-2.2.0' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'kmerresistance' in '../kmerresistance_2.2.0-2_armhf.deb'. dpkg-deb: building package 'kmerresistance-dbgsym' in '../kmerresistance-dbgsym_2.2.0-2_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../kmerresistance_2.2.0-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/28670 and its subdirectories I: Current time: Tue Oct 5 03:44:52 -12 2021 I: pbuilder-time-stamp: 1633448692 Tue Oct 5 15:44:59 UTC 2021 I: 1st build successful. Starting 2nd build on remote node virt64b-armhf-rb.debian.net. Tue Oct 5 15:44:59 UTC 2021 I: Preparing to do remote build '2' on virt64b-armhf-rb.debian.net. Tue Oct 5 15:45:52 UTC 2021 I: Deleting $TMPDIR on virt64b-armhf-rb.debian.net. Tue Oct 5 15:45:54 UTC 2021 I: kmerresistance_2.2.0-2_armhf.changes: Format: 1.8 Date: Sat, 05 Dec 2020 12:01:51 +0100 Source: kmerresistance Binary: kmerresistance kmerresistance-dbgsym Architecture: armhf Version: 2.2.0-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: kmerresistance - correlates mapped genes with the predicted species of WGS samples Changes: kmerresistance (2.2.0-2) unstable; urgency=medium . * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Repository. Checksums-Sha1: 531ab89abe4ace448408c1c94f7f6d8fe229f335 17476 kmerresistance-dbgsym_2.2.0-2_armhf.deb b9da5e91c3e19567a39eb572e27296f78ad975ae 4807 kmerresistance_2.2.0-2_armhf.buildinfo 73bdc3a22ef5df6ffaf4f11261a2f53ddbf8283e 10476 kmerresistance_2.2.0-2_armhf.deb Checksums-Sha256: adeaf2b4d5752737d7a73abe94f7fd53d701ff97808498e9713e393a314c78f1 17476 kmerresistance-dbgsym_2.2.0-2_armhf.deb 57a86709296ee0467603114b1b0afc2753f5d4999bad8da8e66a2ce8c35b8251 4807 kmerresistance_2.2.0-2_armhf.buildinfo 3c0135da0e43957650c73fba31fcc6e6a72751d5e19a5d5ad73e8b93cae59b62 10476 kmerresistance_2.2.0-2_armhf.deb Files: eed53decbfc30d218f359848162dcc50 17476 debug optional kmerresistance-dbgsym_2.2.0-2_armhf.deb fcd12de79396599cddeb0311dfcdfa43 4807 science optional kmerresistance_2.2.0-2_armhf.buildinfo 7da607c1cc4dd7b407d276fe3d6adf2b 10476 science optional kmerresistance_2.2.0-2_armhf.deb Tue Oct 5 15:45:55 UTC 2021 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.3tPqeVvoUc/kmerresistance_2.2.0-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.3tPqeVvoUc/kmerresistance_2.2.0-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.3tPqeVvoUc/kmerresistance_2.2.0-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.3tPqeVvoUc/b1/kmerresistance_2.2.0-2_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.3tPqeVvoUc/b2/kmerresistance_2.2.0-2_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.274s) 0.274s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.019s) 0.019s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Tue Oct 5 15:45:56 UTC 2021 I: found no differences in the changes files, and a .buildinfo file also exists. Tue Oct 5 15:45:56 UTC 2021 I: kmerresistance from bullseye built successfully and reproducibly on armhf. Tue Oct 5 15:45:57 UTC 2021 I: Submitting .buildinfo files to external archives: Tue Oct 5 15:45:57 UTC 2021 I: Submitting 8.0K b1/kmerresistance_2.2.0-2_armhf.buildinfo.asc Tue Oct 5 15:45:59 UTC 2021 I: Submitting 8.0K b2/kmerresistance_2.2.0-2_armhf.buildinfo.asc Tue Oct 5 15:46:00 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Oct 5 15:46:00 UTC 2021 I: Done submitting .buildinfo files. Tue Oct 5 15:46:00 UTC 2021 I: Removing signed kmerresistance_2.2.0-2_armhf.buildinfo.asc files: removed './b1/kmerresistance_2.2.0-2_armhf.buildinfo.asc' removed './b2/kmerresistance_2.2.0-2_armhf.buildinfo.asc'