Fri Jul 23 19:54:46 UTC 2021 I: starting to build vsearch/bullseye/arm64 on jenkins on '2021-07-23 19:54' Fri Jul 23 19:54:46 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_21/33348/console.log Fri Jul 23 19:54:46 UTC 2021 I: Downloading source for bullseye/vsearch=2.15.2-3 --2021-07-23 19:54:46-- http://cdn-fastly.deb.debian.org/debian/pool/main/v/vsearch/vsearch_2.15.2-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2219 (2.2K) Saving to: ‘vsearch_2.15.2-3.dsc’ 0K .. 100% 138M=0s 2021-07-23 19:54:46 (138 MB/s) - ‘vsearch_2.15.2-3.dsc’ saved [2219/2219] Fri Jul 23 19:54:46 UTC 2021 I: vsearch_2.15.2-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: vsearch Binary: vsearch, vsearch-examples Architecture: amd64 arm64 kfreebsd-amd64 ppc64el Version: 2.15.2-3 Maintainer: Debian Med Packaging Team Uploaders: Tim Booth , Andreas Tille , Nilesh Patra Homepage: https://github.com/torognes/vsearch/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/vsearch Vcs-Git: https://salsa.debian.org/med-team/vsearch.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, markdown, ghostscript, time Package-List: vsearch deb science optional arch=amd64,arm64,kfreebsd-amd64,ppc64el vsearch-examples deb science optional arch=amd64,arm64,kfreebsd-amd64,ppc64el Checksums-Sha1: 01385956a4dac55a81ff0685b2e320dc2b0632ce 242701 vsearch_2.15.2.orig.tar.gz ed82be8dba7815f94b20d9c46196babb8c2ac8c9 1631104 vsearch_2.15.2-3.debian.tar.xz Checksums-Sha256: ce821f5f870c00938ddc0938ba5a13f17e697a9ddd1d53cfbebd276ae4c640c8 242701 vsearch_2.15.2.orig.tar.gz 7f3ea941e028aae9df9b13caad25ff0607c52a53591d1545be28561bd3f0de07 1631104 vsearch_2.15.2-3.debian.tar.xz Files: 04abc1565ed11c73b2be35a3a37e46ae 242701 vsearch_2.15.2.orig.tar.gz a2d8591432da89178500ac6416f88ea5 1631104 vsearch_2.15.2-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEJeP/LX9Gnb59DU5Qr8/sjmac4cIFAmAnbsUACgkQr8/sjmac 4cIUZBAAke7g/bFgcxqLmuxURoe8jz4MyHE4frYVk34Ck+V1Y5KFBO3oKkbNlECo GbXeirCfb9svP9irAs7UHRksPK8SR/Bdj/6yTgAUAOLUUhOIo6ygDhcAXuu68THU wY7mJ4bD8iky1I2MPM/F01goQvC/6I2yQJxtMGm0bkA8IXlHsN3HsrU6JgrJmJfc CEemEQvx5vr6DaOR+t/i3sbFTh0toz+J+OzUAR1WwayB6RP3fo8soBmF4t669Pqm m60rFVnSrI25ve8purHXdy+l+NuBv6hkDheiqnMeJb2uVsxz/bUXcJs+jzmOPlJ5 5Socc++6juK9t6OMoHrDtmedzphkcP/rnMZCwduvi0+1cKP9VONXvaW8F5+xVJyc tEVrceVDxf68ya0p2PFTu8SgPu95oKh08uA7g/9BS/yyGIK2y4b0BwvwiEc9nAns LuszAJydvn7c+xQPOyIiPkz8oqHNg2MaDNY+BYURslv5xERq4POazZBngj9hXQk4 bY/7ZgLQNIsJYQI5SbcGySS89VeT0jeRg7SH92FY/9zMzqeqjPhonD60TNa1aeRn oZOsg+njWxY+iwdlsA2H+rMN0cvibocoA2o2heYsg7NyiOnp0bJPtPcM76Bfs8yy YtvefkuTNKINpH6z1Z+FNTL6dhP/39EZwMLoOb/Jiyknotv7X/Y= =+web -----END PGP SIGNATURE----- Fri Jul 23 19:54:46 UTC 2021 I: Checking whether the package is not for us Fri Jul 23 19:54:46 UTC 2021 I: Starting 1st build on remote node codethink14-arm64.debian.net. Fri Jul 23 19:54:46 UTC 2021 I: Preparing to do remote build '1' on codethink14-arm64.debian.net. Fri Jul 23 19:58:29 UTC 2021 I: Deleting $TMPDIR on codethink14-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Jul 23 07:54:50 -12 2021 I: pbuilder-time-stamp: 1627070090 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [vsearch_2.15.2-3.dsc] I: copying [./vsearch_2.15.2.orig.tar.gz] I: copying [./vsearch_2.15.2-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.9Od3tnN2/trustedkeys.kbx': General error gpgv: Signature made Fri Feb 12 18:16:37 2021 -12 gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./vsearch_2.15.2-3.dsc dpkg-source: info: extracting vsearch in vsearch-2.15.2 dpkg-source: info: unpacking vsearch_2.15.2.orig.tar.gz dpkg-source: info: unpacking vsearch_2.15.2-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying sysconf_memory_sizing.patch dpkg-source: info: applying compilerflags.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/12553/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='12553' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.SDOyvRQNwd/pbuilderrc_J59g --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.SDOyvRQNwd/b1 --logfile b1/build.log vsearch_2.15.2-3.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink14-arm64 4.15.0-151-generic #157-Ubuntu SMP Fri Jul 9 21:03:48 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Jun 21 14:26 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Feb 7 02:38 more -rwsr-xr-x 1 root root 51360 Feb 7 02:38 mount -rwxr-xr-x 1 root root 14496 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 21 21:25 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Feb 7 02:38 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 21:55 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30880 Feb 7 02:38 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/12553/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, markdown, ghostscript, time dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on markdown; however: Package markdown is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. pbuilder-satisfydepends-dummy depends on time; however: Package time is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-urw-base35{a} gettext{a} gettext-base{a} ghostscript{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libbz2-dev{a} libcups2{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgs9{a} libgs9-common{a} libicu67{a} libidn11{a} libijs-0.35{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} liblcms2-2{a} libmagic-mgc{a} libmagic1{a} libopenjp2-7{a} libpaper1{a} libpipeline1{a} libpng16-16{a} libsigsegv2{a} libsub-override-perl{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libxml2{a} m4{a} man-db{a} markdown{a} po-debconf{a} poppler-data{a} sensible-utils{a} time{a} ucf{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc curl dbus fonts-droid-fallback libarchive-cpio-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 32.9 MB of archives. After unpacking 122 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 poppler-data all 0.4.10-1 [1602 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 ucf all 3.0043 [74.0 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 fonts-urw-base35 all 20200910-1 [6367 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 fontconfig-config all 2.13.1-4.2 [281 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libgs9-common all 9.53.3~dfsg-7 [734 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 libavahi-common-data arm64 0.8-5 [123 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libavahi-common3 arm64 0.8-5 [57.1 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 libdbus-1-3 arm64 1.12.20-2 [208 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 libavahi-client3 arm64 0.8-5 [60.6 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libcups2 arm64 2.3.3op2-3+deb11u1 [334 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 libpng16-16 arm64 1.6.37-3 [289 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 libfreetype6 arm64 2.10.4+dfsg-1 [393 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 libfontconfig1 arm64 2.13.1-4.2 [344 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 libidn11 arm64 1.33-3 [115 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 libijs-0.35 arm64 0.35-15 [15.8 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 libjbig2dec0 arm64 0.19-2 [62.5 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 libjpeg62-turbo arm64 1:2.0.6-4 [133 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 liblcms2-2 arm64 2.12~rc1-2 [140 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 libopenjp2-7 arm64 2.4.0-3 [160 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 libpaper1 arm64 1.1.28+b1 [21.4 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libdeflate0 arm64 1.7-1 [47.7 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libjbig0 arm64 2.1-3.1+b2 [27.8 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 libwebp6 arm64 0.6.1-2.1 [244 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 libtiff5 arm64 4.2.0-1 [276 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 libgs9 arm64 9.53.3~dfsg-7 [2071 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 ghostscript arm64 9.53.3~dfsg-7 [97.8 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 libbz2-dev arm64 1.0.8-4 [31.5 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 markdown all 1.0.1-10.1 [17.5 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 time arm64 1.9-0.1 [50.6 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] Fetched 32.9 MB in 1s (42.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. 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Setting up liblcms2-2:arm64 (2.12~rc1-2) ... Setting up time (1.9-0.1) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:arm64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libijs-0.35:arm64 (0.35-15) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:arm64 (1.0.9-2+b2) ... Setting up libmagic1:arm64 (1:5.39-3) ... Setting up libdeflate0:arm64 (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up fonts-urw-base35 (20200910-1) ... Setting up libjbig0:arm64 (2.1-3.1+b2) ... Setting up poppler-data (0.4.10-1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libjpeg62-turbo:arm64 (1:2.0.6-4) ... Setting up libjbig2dec0:arm64 (0.19-2) ... Setting up libidn11:arm64 (1.33-3) ... Setting up libavahi-common-data:arm64 (0.8-5) ... Setting up libdbus-1-3:arm64 (1.12.20-2) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up libpng16-16:arm64 (1.6.37-3) ... Setting up autopoint (0.21-4) ... Setting up libwebp6:arm64 (0.6.1-2.1) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libopenjp2-7:arm64 (2.4.0-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libtiff5:arm64 (4.2.0-1) ... Setting up libelf1:arm64 (0.183-1) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.7) ... Setting up markdown (1.0.1-10.1) ... Setting up libbz2-dev:arm64 (1.0.8-4) ... Setting up libgs9-common (9.53.3~dfsg-7) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libavahi-common3:arm64 (0.8-5) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libfreetype6:arm64 (2.10.4+dfsg-1) ... Setting up ucf (3.0043) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libavahi-client3:arm64 (0.8-5) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpaper1:arm64 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up fontconfig-config (2.13.1-4.2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libcups2:arm64 (2.3.3op2-3+deb11u1) ... Setting up libfontconfig1:arm64 (2.13.1-4.2) ... Setting up libgs9:arm64 (9.53.3~dfsg-7) ... Setting up debhelper (13.3.4) ... Setting up ghostscript (9.53.3~dfsg-7) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/vsearch-2.15.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../vsearch_2.15.2-3_source.changes dpkg-buildpackage: info: source package vsearch dpkg-buildpackage: info: source version 2.15.2-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/vsearch-2.15.2' dh_clean rm -rf data/simm if [ -d test ] ; then find test -mindepth 1 -not -name '*.sh' -delete ; fi rm -f README.html data/README.html rm -f *.out make[1]: Leaving directory '/build/vsearch-2.15.2' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:85: installing './compile' configure.ac:6: installing './config.guess' configure.ac:6: installing './config.sub' configure.ac:7: installing './install-sh' configure.ac:7: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking target system type... aarch64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for ranlib... ranlib checking for pthread_create in -lpthread... yes checking for dlopen in -ldl... yes checking for GetProcessMemoryInfo in -lpsapi... no checking how to run the C++ preprocessor... g++ -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking regex.h usability... yes checking regex.h presence... yes checking for regex.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for inline... inline checking for size_t... yes checking for uint32_t... yes checking for int64_t... yes checking for uint64_t... yes checking for uint8_t... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for working strtod... yes checking for working alloca.h... yes checking for alloca... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for memmove... yes checking for memcpy... yes checking for posix_memalign... yes checking for gettimeofday... yes checking for localtime... yes checking for memchr... yes checking for memset... yes checking for pow... yes checking for regcomp... yes checking for strcasecmp... yes checking for strchr... yes checking for strcspn... yes checking for sysinfo... yes checking bzlib.h usability... yes checking bzlib.h presence... yes checking for bzlib.h... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for ps2pdf... yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating man/Makefile config.status: creating config.h config.status: executing depfiles commands debian/rules override_dh_auto_build make[1]: Entering directory '/build/vsearch-2.15.2' dh_auto_build make -j8 make[2]: Entering directory '/build/vsearch-2.15.2' make all-recursive make[3]: Entering directory '/build/vsearch-2.15.2' Making all in src make[4]: Entering directory '/build/vsearch-2.15.2/src' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o align.o align.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o align_simd.o align_simd.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o allpairs.o allpairs.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o arch.o arch.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o attributes.o attributes.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o bitmap.o bitmap.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o chimera.o chimera.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o cluster.o cluster.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o cut.o cut.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o db.o db.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o dbhash.o dbhash.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o dbindex.o dbindex.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o derep.o derep.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o dynlibs.o dynlibs.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o eestats.o eestats.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o fasta.o fasta.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o fastq.o fastq.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o fastqjoin.o fastqjoin.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o fastqops.o fastqops.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o fastx.o fastx.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o filter.o filter.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o getseq.o getseq.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o kmerhash.o kmerhash.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o linmemalign.o linmemalign.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o maps.o maps.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o mask.o mask.cc gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -c -o md5.o md5.c g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o mergepairs.o mergepairs.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o minheap.o minheap.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o msa.o msa.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o otutable.o otutable.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o rerep.o rerep.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o results.o results.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o search.o search.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o searchcore.o searchcore.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o searchexact.o searchexact.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o sffconvert.o sffconvert.cc gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sha1.o sha1.c g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o showalign.o showalign.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o shuffle.o shuffle.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o sintax.o sintax.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o sortbylength.o sortbylength.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o sortbysize.o sortbysize.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o subsample.o subsample.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o udb.o udb.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o unique.o unique.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o userfields.o userfields.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o util.o util.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o vsearch.o vsearch.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -Wno-sign-compare -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o libcityhash_a-city.o `test -f 'city.cc' || echo './'`city.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o cpu.o cpu.cc rm -f libcityhash.a ar cru libcityhash.a libcityhash_a-city.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libcityhash.a rm -f libcpu.a ar cru libcpu.a cpu.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libcpu.a g++ -Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -g -O2 -fdebug-prefix-map=/build/vsearch-2.15.2=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -Wl,-z,relro -Wl,-z,now -flto -o ../bin/vsearch align.o align_simd.o allpairs.o arch.o attributes.o bitmap.o chimera.o cluster.o cut.o db.o dbhash.o dbindex.o derep.o dynlibs.o eestats.o fasta.o fastq.o fastqjoin.o fastqops.o fastx.o filter.o getseq.o kmerhash.o linmemalign.o maps.o mask.o md5.o mergepairs.o minheap.o msa.o otutable.o rerep.o results.o search.o searchcore.o searchexact.o sffconvert.o sha1.o showalign.o shuffle.o sintax.o sortbylength.o sortbysize.o subsample.o udb.o unique.o userfields.o util.o vsearch.o libcityhash.a libcpu.a -ldl -lpthread make[4]: Leaving directory '/build/vsearch-2.15.2/src' Making all in man make[4]: Entering directory '/build/vsearch-2.15.2/man' sed -e 's/\\-/-/g' vsearch.1 | \ if [ $(uname) == "Darwin" ] ; then \ iconv -f UTF-8 -t ISO-8859-1 ; \ else \ cat ; \ fi | \ groff -W space -t -m mandoc -T ps -P -pa4 | ps2pdf - vsearch_manual.pdf make[4]: Leaving directory '/build/vsearch-2.15.2/man' make[4]: Entering directory '/build/vsearch-2.15.2' make[4]: Leaving directory '/build/vsearch-2.15.2' make[3]: Leaving directory '/build/vsearch-2.15.2' make[2]: Leaving directory '/build/vsearch-2.15.2' markdown README.md > README.html # Remove redundant travis-build URL sed -i 1d README.html make[1]: Leaving directory '/build/vsearch-2.15.2' debian/rules override_dh_auto_test make[1]: Entering directory '/build/vsearch-2.15.2' if [ -d /usr/share/vsearch/data ] ; then \ mkdir -p ../vsearch-data && \ for datadir in `find /usr/share/vsearch/data -type d | sed -e "s#/usr/share/vsearch/data/*##" -e "/^$/d"` ; do mkdir -p ../vsearch-data/${datadir} ; done && \ for datafile in `find /usr/share/vsearch/data -type f` ; do \ ln -s ${datafile} `echo ${datafile} | sed -e "s#/usr/share/vsearch/data/#../vsearch-data/#"` ; \ done && \ zcat ../vsearch-data/BioMarKs.fsa.gz > ../vsearch-data/BioMarKs.fsa && \ cd test && \ for t in *.sh ; do \ bash $t v ; \ done && \ cd .. && \ rm -rf ../vsearch-data ; \ fi make[1]: Leaving directory '/build/vsearch-2.15.2' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j8 install DESTDIR=/build/vsearch-2.15.2/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/vsearch-2.15.2' Making install in src make[2]: Entering directory '/build/vsearch-2.15.2/src' make[3]: Entering directory '/build/vsearch-2.15.2/src' /bin/mkdir -p '/build/vsearch-2.15.2/debian/tmp/usr/bin' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/install -c ../bin/vsearch '/build/vsearch-2.15.2/debian/tmp/usr/bin' make[3]: Leaving directory '/build/vsearch-2.15.2/src' make[2]: Leaving directory '/build/vsearch-2.15.2/src' Making install in man make[2]: Entering directory '/build/vsearch-2.15.2/man' make[3]: Entering directory '/build/vsearch-2.15.2/man' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/vsearch-2.15.2/debian/tmp/usr/share/doc/vsearch' /bin/mkdir -p '/build/vsearch-2.15.2/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 vsearch_manual.pdf '/build/vsearch-2.15.2/debian/tmp/usr/share/doc/vsearch' /usr/bin/install -c -m 644 vsearch.1 '/build/vsearch-2.15.2/debian/tmp/usr/share/man/man1' make[3]: Leaving directory '/build/vsearch-2.15.2/man' make[2]: Leaving directory '/build/vsearch-2.15.2/man' make[2]: Entering directory '/build/vsearch-2.15.2' make[3]: Entering directory '/build/vsearch-2.15.2' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/vsearch-2.15.2' make[2]: Leaving directory '/build/vsearch-2.15.2' make[1]: Leaving directory '/build/vsearch-2.15.2' debian/rules override_dh_install make[1]: Entering directory '/build/vsearch-2.15.2' dh_install if [ -d test ] ; then \ # tweak path tp vsearch binary in test scripts \ mkdir -p /build/vsearch-2.15.2/debian/vsearch/usr/share/doc/vsearch/test ; \ for tst in test/*.sh ; do sed 's?\.\./bin/vsearch?/usr/bin/vsearch?' ${tst} > /build/vsearch-2.15.2/debian/vsearch/usr/share/doc/vsearch/${tst} ; done ; \ fi make[1]: Leaving directory '/build/vsearch-2.15.2' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package vsearch-examples: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'vsearch-dbgsym' in '../vsearch-dbgsym_2.15.2-3_arm64.deb'. dpkg-deb: building package 'vsearch-examples' in '../vsearch-examples_2.15.2-3_arm64.deb'. dpkg-deb: building package 'vsearch' in '../vsearch_2.15.2-3_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../vsearch_2.15.2-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/12553 and its subdirectories I: Current time: Fri Jul 23 07:58:27 -12 2021 I: pbuilder-time-stamp: 1627070307 Fri Jul 23 19:58:29 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink9-arm64.debian.net. Fri Jul 23 19:58:30 UTC 2021 I: Preparing to do remote build '2' on codethink9-arm64.debian.net. Fri Jul 23 20:00:49 UTC 2021 I: Deleting $TMPDIR on codethink9-arm64.debian.net. Fri Jul 23 20:00:50 UTC 2021 I: vsearch_2.15.2-3_arm64.changes: Format: 1.8 Date: Fri, 12 Feb 2021 22:45:40 +0100 Source: vsearch Binary: vsearch vsearch-dbgsym vsearch-examples Architecture: arm64 Version: 2.15.2-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: vsearch - tool for processing metagenomic sequences vsearch-examples - Test Data for vsearch tool for processing metagenomic sequences Changes: vsearch (2.15.2-3) unstable; urgency=medium . * Team upload. * Add Architecture arm64; allows reverse dependencies to migrate on arm64. Checksums-Sha1: 023998a7ef0788a17c6c23721200c1ed8c84850c 537572 vsearch-dbgsym_2.15.2-3_arm64.deb 60d90c339c2066f047894b856365e7e13da55607 3479856 vsearch-examples_2.15.2-3_arm64.deb 1dcf6757af5983774e80990eaaff14391b2d3095 6190 vsearch_2.15.2-3_arm64.buildinfo 346299083504e704771d322adb3daa26c7bc59c2 335392 vsearch_2.15.2-3_arm64.deb Checksums-Sha256: ce285d3676f292c5fb7cb19eb49385d1088337cbebb4a61e0e706e9f8a1fbeda 537572 vsearch-dbgsym_2.15.2-3_arm64.deb 8f0434f0a589274a21be808ed82903d8dc00c49660a1879d58116efb4ec36ebd 3479856 vsearch-examples_2.15.2-3_arm64.deb 48f39e2b1ae398a73fc63c54990adb6b78274f1ca0b3d8e88baaa39d67266895 6190 vsearch_2.15.2-3_arm64.buildinfo a355a73ef3ffda62d65259fa6a06efdb686c4af05edaa0241387a6468e6b3cb7 335392 vsearch_2.15.2-3_arm64.deb Files: b9629e30756971987cef7ab97bfe6b4b 537572 debug optional vsearch-dbgsym_2.15.2-3_arm64.deb ac4a2721cf3586c7c76c6d37734437d5 3479856 science optional vsearch-examples_2.15.2-3_arm64.deb 65d55dd88052d15539846f517b3a3564 6190 science optional vsearch_2.15.2-3_arm64.buildinfo 02a10a97de0fbe9260cafb442191891f 335392 science optional vsearch_2.15.2-3_arm64.deb Fri Jul 23 20:00:51 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.SDOyvRQNwd/vsearch_2.15.2-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.SDOyvRQNwd/vsearch_2.15.2-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.SDOyvRQNwd/vsearch_2.15.2-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.SDOyvRQNwd/b1/vsearch_2.15.2-3_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.SDOyvRQNwd/b2/vsearch_2.15.2-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.319s) 0.319s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.072s) 0.072s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Fri Jul 23 20:00:53 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Fri Jul 23 20:00:53 UTC 2021 I: vsearch from bullseye built successfully and reproducibly on arm64. Fri Jul 23 20:00:55 UTC 2021 I: Submitting .buildinfo files to external archives: Fri Jul 23 20:00:55 UTC 2021 I: Submitting 8.0K b1/vsearch_2.15.2-3_arm64.buildinfo.asc Fri Jul 23 20:00:55 UTC 2021 I: Submitting 8.0K b2/vsearch_2.15.2-3_arm64.buildinfo.asc Fri Jul 23 20:00:56 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jul 23 20:00:56 UTC 2021 I: Done submitting .buildinfo files. Fri Jul 23 20:00:56 UTC 2021 I: Removing signed vsearch_2.15.2-3_arm64.buildinfo.asc files: removed './b1/vsearch_2.15.2-3_arm64.buildinfo.asc' removed './b2/vsearch_2.15.2-3_arm64.buildinfo.asc'