Sat Aug 14 04:48:33 UTC 2021 I: starting to build snp-sites/bullseye/arm64 on jenkins on '2021-08-14 04:48' Sat Aug 14 04:48:33 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_1/2328/console.log Sat Aug 14 04:48:33 UTC 2021 I: Downloading source for bullseye/snp-sites=2.5.1-1 --2021-08-14 04:48:33-- http://cdn-fastly.deb.debian.org/debian/pool/main/s/snp-sites/snp-sites_2.5.1-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2266 (2.2K) Saving to: ‘snp-sites_2.5.1-1.dsc’ 0K .. 100% 153M=0s 2021-08-14 04:48:33 (153 MB/s) - ‘snp-sites_2.5.1-1.dsc’ saved [2266/2266] Sat Aug 14 04:48:33 UTC 2021 I: snp-sites_2.5.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: snp-sites Binary: snp-sites, libsnp-sites1, libsnp-sites1-dev Architecture: any Version: 2.5.1-1 Maintainer: Debian Med Packaging Team Uploaders: Jorge Soares , Andreas Tille , Sascha Steinbiss Homepage: https://github.com/sanger-pathogens/snp-sites Standards-Version: 4.1.4 Vcs-Browser: https://salsa.debian.org/med-team/snp-sites Vcs-Git: https://salsa.debian.org/med-team/snp-sites.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, zlib1g, zlib1g-dev Build-Depends: debhelper (>= 11), zlib1g-dev, check, pkg-config, d-shlibs, asciidoctor Package-List: libsnp-sites1 deb libs optional arch=any libsnp-sites1-dev deb libdevel optional arch=any snp-sites deb science optional arch=any Checksums-Sha1: 225ae5918875829a3d9d7a08daf383195d4edbe4 15577807 snp-sites_2.5.1.orig.tar.gz 1d9b6975cf394db4f260021435ba7883e2c9b2a8 7968 snp-sites_2.5.1-1.debian.tar.xz Checksums-Sha256: 913f79302e5d3127aea382756abc9ffeb05e26ce00022f43a6ea16a55cdd7a7e 15577807 snp-sites_2.5.1.orig.tar.gz 0f5b2e6dcddea62310aea84af8db0c5fb3c6b0984f3a1b8376555de10d2549b9 7968 snp-sites_2.5.1-1.debian.tar.xz Files: a4183dadd8f8d56398654c943e4f1811 15577807 snp-sites_2.5.1.orig.tar.gz 3279cfd988b49767ca39b93dd15db4af 7968 snp-sites_2.5.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEWzS6WqtVB+kDQm6F6NN64vCfSHIFAl2wh3EACgkQ6NN64vCf SHK8gQ/9ELPKIPTDJ8C0lAaPGb1/ruMceSxZHKDDEgxtdWFfA09H+N6hCqTqlOhT KxFdHK5LYY18hb3bgLVsnnFMuGEvoAI57bv0MFi1RpDWGYhX9wvZe2bYv9hkxd0K RO7zcTd0TVzYgytemWuP2qgU/ToSImfAlGX2ued9bN9eX0KS7pHcC9ADoxz2u88A AODWj0/WWhtF6NLBpdWpOO2VzQ4RHBTJ+GQiuEL4dtkopna8KlLHRivxigqvSg5V 5JzIXnKPqgF7yn+7wz9gzHSSMbOqwTcz3LllMX26K7NT4gzqS6wrSUoTTc9f8hJZ 7NpLZaN8iYM2NL7SBWtKmzM3ICxqGgt6eqX7GYcB2vi8SkxEAI9z9Y7Z9ci1W93l n3RAEy8nk1GExRtvvk24HbyEg/DebFuPGCLnijPsALHadzbr+aRlzHhqM5EAVfWY Cm6GI0CRNeiwCwz/3phzSS3CoVzg6LDnNwUYPnmtGuKqctoQELyT4P7I+6w6Iqeh 6LQEcaui4HrRnrjNdz2DYEiyN00noYdMCsaoxXNdN33TPAkhDcHNVMYIPwFuamtE Kj4eqjbpm0sqFwPyDXBVSs8rQRmgE3uEkPxjLMN45lP0/jaHAgPYJUNXIYRUVBfH 0EYr2tGulSt4cOz50toi10q1ZWs7iBvQIMbMxyKL3/9jc5Hb73Q= =mrJ3 -----END PGP SIGNATURE----- Sat Aug 14 04:48:33 UTC 2021 I: Checking whether the package is not for us Sat Aug 14 04:48:33 UTC 2021 I: Starting 1st build on remote node codethink9-arm64.debian.net. Sat Aug 14 04:48:33 UTC 2021 I: Preparing to do remote build '1' on codethink9-arm64.debian.net. Sat Aug 14 04:49:46 UTC 2021 I: Deleting $TMPDIR on codethink9-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Sep 15 23:11:37 -12 2022 I: pbuilder-time-stamp: 1663326697 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [snp-sites_2.5.1-1.dsc] I: copying [./snp-sites_2.5.1.orig.tar.gz] I: copying [./snp-sites_2.5.1-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.ydmhXdSK/trustedkeys.kbx': General error gpgv: Signature made Wed Oct 23 05:01:37 2019 -12 gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./snp-sites_2.5.1-1.dsc dpkg-source: info: extracting snp-sites in snp-sites-2.5.1 dpkg-source: info: unpacking snp-sites_2.5.1.orig.tar.gz dpkg-source: info: unpacking snp-sites_2.5.1-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/18308/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='18308' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.7D3gj6Alg0/pbuilderrc_cfUv --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.7D3gj6Alg0/b1 --logfile b1/build.log snp-sites_2.5.1-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink9-arm64 4.15.0-153-generic #160-Ubuntu SMP Thu Jul 29 07:06:07 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Aug 4 2021 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Jul 28 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Jul 28 2021 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 2021 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Jul 28 2021 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Jul 28 2021 more -rwsr-xr-x 1 root root 51360 Jul 28 2021 mount -rwxr-xr-x 1 root root 14496 Jul 28 2021 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Sep 14 03:48 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Jul 28 2021 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30880 Jul 28 2021 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Jul 28 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/18308/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11), zlib1g-dev, check, pkg-config, d-shlibs, asciidoctor dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on check; however: Package check is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on asciidoctor; however: Package asciidoctor is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: asciidoctor{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} check{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libdebhelper-perl{a} libedit2{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libpipeline1{a} libruby2.7{a} libsigsegv2{a} libsub-override-perl{a} libsubunit-dev{a} libsubunit0{a} libtool{a} libuchardet0{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} openssl{a} pkg-config{a} po-debconf{a} rake{a} ruby{a} ruby-asciidoctor{a} ruby-minitest{a} ruby-net-telnet{a} ruby-power-assert{a} ruby-rubygems{a} ruby-test-unit{a} ruby-xmlrpc{a} ruby2.7{a} rubygems-integration{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-lato libarchive-cpio-perl libglib2.0-data libjs-jquery libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs zip 0 packages upgraded, 57 newly installed, 0 to remove and 0 not upgraded. Need to get 26.5 MB of archives. After unpacking 96.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-8 [142 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 openssl arm64 1.1.1k-1 [829 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 ca-certificates all 20210119 [158 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 rubygems-integration all 1.18 [6704 B] Get: 14 http://deb.debian.org/debian bullseye/main arm64 rake all 13.0.3-1 [84.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 ruby-minitest all 5.13.0-1 [57.3 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 ruby-net-telnet all 0.1.1-2 [12.5 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 ruby-power-assert all 1.1.7-2 [11.5 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 ruby-test-unit all 3.3.9-1 [86.1 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 ruby-xmlrpc all 0.3.0-2 [23.7 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 libmd0 arm64 1.0.3-3 [27.9 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libbsd0 arm64 0.11.3-1 [106 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libedit2 arm64 3.1-20191231-2+b1 [92.1 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 libyaml-0-2 arm64 0.2.2-1 [45.1 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 libruby2.7 arm64 2.7.4-1 [4031 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 ruby2.7 arm64 2.7.4-1 [747 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 ruby-rubygems all 3.2.5-2 [281 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 ruby arm64 1:2.7+2 [11.7 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 ruby-asciidoctor all 2.0.12-2 [206 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 asciidoctor all 2.0.12-2 [83.9 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libsubunit0 arm64 1.4.0-3 [9708 B] Get: 37 http://deb.debian.org/debian bullseye/main arm64 libsubunit-dev arm64 1.4.0-3 [10.7 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 check arm64 0.15.2-2 [115 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 d-shlibs all 0.98 [17.9 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libglib2.0-0 arm64 2.66.8-1 [1286 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 pkg-config arm64 0.29.2-1 [63.6 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] Fetched 26.5 MB in 1s (43.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8_arm64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../01-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_arm64.deb ... 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Setting up libxml2:arm64 (2.9.10+dfsg-6.7) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libedit2:arm64 (3.1-20191231-2+b1) ... Setting up libsubunit-dev:arm64 (1.4.0-3) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up check:arm64 (0.15.2-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up rubygems-integration (1.18) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up debhelper (13.3.4) ... Setting up rake (13.0.3-1) ... Setting up ruby-rubygems (3.2.5-2) ... Setting up libruby2.7:arm64 (2.7.4-1) ... Setting up ruby2.7 (2.7.4-1) ... Setting up ruby (1:2.7+2) ... Setting up ruby-asciidoctor (2.0.12-2) ... Setting up asciidoctor (2.0.12-2) ... Processing triggers for libc-bin (2.31-13) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/snp-sites-2.5.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../snp-sites_2.5.1-1_source.changes dpkg-buildpackage: info: source package snp-sites dpkg-buildpackage: info: source version 2.5.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sascha Steinbiss dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --with autoreconf dh_clean debian/rules build dh build --with autoreconf dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:14: installing './compile' configure.ac:7: installing './config.guess' configure.ac:7: installing './config.sub' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --libexecdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for check >= 0.8.2... yes checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking for floor in -lm... yes checking if zlib is wanted... yes checking for inflateEnd in -lz... yes checking for zlib.h... (cached) yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build make -j8 make[1]: Entering directory '/build/snp-sites-2.5.1' make all-recursive make[2]: Entering directory '/build/snp-sites-2.5.1' Making all in src make[3]: Entering directory '/build/snp-sites-2.5.1/src' gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include --std=c99 -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snp_sites-main.o `test -f 'main.c' || echo './'`main.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o alignment-file.lo alignment-file.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcf.lo vcf.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o phylib-of-snp-sites.lo phylib-of-snp-sites.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snp-sites.lo snp-sites.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fasta-of-snp-sites.lo fasta-of-snp-sites.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c vcf.c -fPIC -DPIC -o .libs/vcf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c alignment-file.c -fPIC -DPIC -o .libs/alignment-file.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fasta-of-snp-sites.c -fPIC -DPIC -o .libs/fasta-of-snp-sites.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c phylib-of-snp-sites.c -fPIC -DPIC -o .libs/phylib-of-snp-sites.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c snp-sites.c -fPIC -DPIC -o .libs/snp-sites.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fasta-of-snp-sites.c -o fasta-of-snp-sites.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c phylib-of-snp-sites.c -o phylib-of-snp-sites.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c snp-sites.c -o snp-sites.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c vcf.c -o vcf.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c alignment-file.c -o alignment-file.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:0 -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib -o libsnp-sites.la -rpath /usr/lib/aarch64-linux-gnu alignment-file.lo vcf.lo phylib-of-snp-sites.lo snp-sites.lo fasta-of-snp-sites.lo -lz -lm libtool: link: gcc -shared -fPIC -DPIC .libs/alignment-file.o .libs/vcf.o .libs/phylib-of-snp-sites.o .libs/snp-sites.o .libs/fasta-of-snp-sites.o -L/usr/lib -lz -lm -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libsnp-sites.so.1 -o .libs/libsnp-sites.so.1.0.0 libtool: link: (cd ".libs" && rm -f "libsnp-sites.so.1" && ln -s "libsnp-sites.so.1.0.0" "libsnp-sites.so.1") libtool: link: (cd ".libs" && rm -f "libsnp-sites.so" && ln -s "libsnp-sites.so.1.0.0" "libsnp-sites.so") libtool: link: ar cr .libs/libsnp-sites.a alignment-file.o vcf.o phylib-of-snp-sites.o snp-sites.o fasta-of-snp-sites.o libtool: link: ranlib .libs/libsnp-sites.a libtool: link: ( cd ".libs" && rm -f "libsnp-sites.la" && ln -s "../libsnp-sites.la" "libsnp-sites.la" ) /bin/bash ../libtool --tag=CC --mode=link gcc --std=c99 -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib -o snp-sites snp_sites-main.o libsnp-sites.la -lpthread -lz -lm libtool: link: gcc --std=c99 -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/snp-sites snp_sites-main.o -L/usr/lib ./.libs/libsnp-sites.so -lpthread -lz -lm make[3]: Leaving directory '/build/snp-sites-2.5.1/src' make[3]: Entering directory '/build/snp-sites-2.5.1' make[3]: Leaving directory '/build/snp-sites-2.5.1' make[2]: Leaving directory '/build/snp-sites-2.5.1' make[1]: Leaving directory '/build/snp-sites-2.5.1' dh_auto_test make -j8 check VERBOSE=1 make[1]: Entering directory '/build/snp-sites-2.5.1' Making check in src make[2]: Entering directory '/build/snp-sites-2.5.1/src' make run-all-tests make[3]: Entering directory '/build/snp-sites-2.5.1/src' gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -pthread -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ../tests/run_all_tests-check-snp-sites.o `test -f '../tests/check-snp-sites.c' || echo './'`../tests/check-snp-sites.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -pthread -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ../tests/run_all_tests-check-vcf.o `test -f '../tests/check-vcf.c' || echo './'`../tests/check-vcf.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -pthread -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ../tests/run_all_tests-helper-methods.o `test -f '../tests/helper-methods.c' || echo './'`../tests/helper-methods.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -pthread -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ../tests/run_all_tests-run-all-tests.o `test -f '../tests/run-all-tests.c' || echo './'`../tests/run-all-tests.c In file included from ../tests/check-snp-sites.c:23: ../tests/check-snp-sites.c: In function 'valid_alignment_with_one_line_per_sequence_fn': ../tests/check-snp-sites.c:40:147: warning: too many arguments for format [-Wformat-extra-args] 40 | fail_unless( compare_files("../tests/data/alignment_file_one_line_per_sequence.aln.vcf", "alignment_file_one_line_per_sequence.aln.vcf" ) == 1, "Invalid VCF file for 1 line per seq" ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../tests/check-snp-sites.c:41:153: warning: too many arguments for format [-Wformat-extra-args] 41 | fail_unless( compare_files("../tests/data/alignment_file_one_line_per_sequence.aln.phylip", "alignment_file_one_line_per_sequence.aln.phylip" ) == 1, "Invalid Phylip file for 1 line per seq" ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../tests/check-snp-sites.c:42:167: warning: too many arguments for format [-Wformat-extra-args] 42 | fail_unless( compare_files("../tests/data/alignment_file_one_line_per_sequence.aln.snp_sites.aln","alignment_file_one_line_per_sequence.aln.snp_sites.aln" ) == 1 , "Invalid ALN file for 1 line per seq"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../tests/check-snp-sites.c: In function 'valid_alignment_with_n_as_gap_fn': ../tests/check-snp-sites.c:53:118: warning: too many arguments for format [-Wformat-extra-args] 53 | fail_unless( compare_files("../tests/data/alignment_file_with_n.aln.vcf", "alignment_file_with_n.aln.vcf" ) == 1, "Invalid VCF file for 1 line per seq" ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../tests/check-snp-sites.c:54:124: warning: too many arguments for format [-Wformat-extra-args] 54 | fail_unless( compare_files("../tests/data/alignment_file_with_n.aln.phylip", "alignment_file_with_n.aln.phylip" ) == 1, "Invalid Phylip file for 1 line per seq" ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../tests/check-snp-sites.c:55:138: warning: too many arguments for format [-Wformat-extra-args] 55 | fail_unless( compare_files("../tests/data/alignment_file_with_n.aln.snp_sites.aln","alignment_file_with_n.aln.snp_sites.aln" ) == 1 , "Invalid ALN file for 1 line per seq"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../tests/check-snp-sites.c: In function 'valid_alignment_with_one_line_per_sequence_gzipped_fn': ../tests/check-snp-sites.c:67:150: warning: too many arguments for format [-Wformat-extra-args] 67 | fail_unless( compare_files("../tests/data/alignment_file_one_line_per_sequence.aln.vcf", "alignment_file_one_line_per_sequence.aln.gz.vcf" ) == 1, "Invalid VCF file for 1 line per seq" ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../tests/check-snp-sites.c:68:156: warning: too many arguments for format [-Wformat-extra-args] 68 | fail_unless( compare_files("../tests/data/alignment_file_one_line_per_sequence.aln.phylip", "alignment_file_one_line_per_sequence.aln.gz.phylip" ) == 1, "Invalid Phylip file for 1 line per seq" ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../tests/check-snp-sites.c:69:170: warning: too many arguments for format [-Wformat-extra-args] 69 | fail_unless( compare_files("../tests/data/alignment_file_one_line_per_sequence.aln.snp_sites.aln","alignment_file_one_line_per_sequence.aln.gz.snp_sites.aln" ) == 1 , "Invalid ALN file for 1 line per seq"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../tests/check-snp-sites.c: In function 'valid_alignment_with_multiple_lines_per_sequence_fn': ../tests/check-snp-sites.c:79:155: warning: too many arguments for format [-Wformat-extra-args] 79 | fail_unless( compare_files("../tests/data/alignment_file_one_line_per_sequence.aln.vcf", "alignment_file_multiple_lines_per_sequence.aln.vcf" ) == 1, "Invalid VCF file for multiple lines per seq" ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../tests/check-snp-sites.c:80:161: warning: too many arguments for format [-Wformat-extra-args] 80 | fail_unless( compare_files("../tests/data/alignment_file_one_line_per_sequence.aln.phylip", "alignment_file_multiple_lines_per_sequence.aln.phylip" ) == 1, "Invalid Phylip file for multiple lines per seq" ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../tests/check-snp-sites.c:81:174: warning: too many arguments for format [-Wformat-extra-args] 81 | fail_unless( compare_files("../tests/data/alignment_file_one_line_per_sequence.aln.snp_sites.aln","alignment_file_multiple_lines_per_sequence.aln.snp_sites.aln" ) == 1 ,"Invalid ALN file for multiple lines per seq"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../tests/check-snp-sites.c: In function 'valid_alignment_with_pure_mode_fn': ../tests/check-snp-sites.c:91:115: warning: too many arguments for format [-Wformat-extra-args] 91 | fail_unless( compare_files("../tests/data/pure_mode_alignment.aln.vcf", "pure_mode_alignment.aln.vcf" ) == 1, "Invalid VCF file for multiple lines per seq" ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../tests/check-snp-sites.c:92:121: warning: too many arguments for format [-Wformat-extra-args] 92 | fail_unless( compare_files("../tests/data/pure_mode_alignment.aln.phylip", "pure_mode_alignment.aln.phylip" ) == 1, "Invalid Phylip file for multiple lines per seq" ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../tests/check-snp-sites.c:93:134: warning: too many arguments for format [-Wformat-extra-args] 93 | fail_unless( compare_files("../tests/data/pure_mode_alignment.aln.snp_sites.aln","pure_mode_alignment.aln.snp_sites.aln" ) == 1 ,"Invalid ALN file for multiple lines per seq"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../tests/check-snp-sites.c: In function 'valid_alignment_with_monomorphic_sites_fn': ../tests/check-snp-sites.c:103:139: warning: too many arguments for format [-Wformat-extra-args] 103 | fail_unless( compare_files("../tests/data/pure_mode_monomorphic_alignment.aln.vcf", "pure_mode_monomorphic_alignment.aln.vcf" ) == 1, "Invalid VCF file for multiple lines per seq" ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../tests/check-snp-sites.c:104:145: warning: too many arguments for format [-Wformat-extra-args] 104 | fail_unless( compare_files("../tests/data/pure_mode_monomorphic_alignment.aln.phylip", "pure_mode_monomorphic_alignment.aln.phylip" ) == 1, "Invalid Phylip file for multiple lines per seq" ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../tests/check-snp-sites.c:105:158: warning: too many arguments for format [-Wformat-extra-args] 105 | fail_unless( compare_files("../tests/data/pure_mode_monomorphic_alignment.aln.snp_sites.aln","pure_mode_monomorphic_alignment.aln.snp_sites.aln" ) == 1 ,"Invalid ALN file for multiple lines per seq"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../tests/check-snp-sites.c: In function 'valid_with_only_aln_file_output_default_fn': ../tests/check-snp-sites.c:116:169: warning: too many arguments for format [-Wformat-extra-args] 116 | fail_unless( compare_files("../tests/data/alignment_file_one_line_per_sequence.aln.snp_sites.aln","alignment_file_one_line_per_sequence.aln.snp_sites.aln" ) == 1 ,"Invalid ALN file for multiple lines per seq"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../tests/check-snp-sites.c: In function 'valid_with_only_aln_file_output_fn': ../tests/check-snp-sites.c:124:169: warning: too many arguments for format [-Wformat-extra-args] 124 | fail_unless( compare_files("../tests/data/alignment_file_one_line_per_sequence.aln.snp_sites.aln","alignment_file_one_line_per_sequence.aln.snp_sites.aln" ) == 1 ,"Invalid ALN file for multiple lines per seq"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../tests/check-snp-sites.c: In function 'valid_with_only_aln_file_output_with_custom_name_fn': ../tests/check-snp-sites.c:133:131: warning: too many arguments for format [-Wformat-extra-args] 133 | fail_unless( compare_files("../tests/data/alignment_file_one_line_per_sequence.aln.snp_sites.aln","some_custom_name" ) == 1 ,"Only aln with custom name should be outputted"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../tests/check-snp-sites.c: In function 'valid_with_phylip_outputted_with_custom_name_fn': ../tests/check-snp-sites.c:141:122: warning: too many arguments for format [-Wformat-extra-args] 141 | fail_unless( compare_files("../tests/data/alignment_file_one_line_per_sequence.aln.phylip", "some_custom_name" ) == 1, "Custom name needs extra extension for phylip" ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../tests/check-snp-sites.c: In function 'valid_with_all_outputted_with_custom_name_fn': ../tests/check-snp-sites.c:157:123: warning: too many arguments for format [-Wformat-extra-args] 157 | fail_unless( compare_files("../tests/data/alignment_file_one_line_per_sequence.aln.vcf", "some_custom_name.vcf" ) == 1, "Custom name needs extra extension for VCF" ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../tests/check-snp-sites.c:158:129: warning: too many arguments for format [-Wformat-extra-args] 158 | fail_unless( compare_files("../tests/data/alignment_file_one_line_per_sequence.aln.phylip", "some_custom_name.phylip" ) == 1, "Custom name needs extra extension for phylip" ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../tests/check-snp-sites.c:159:143: warning: too many arguments for format [-Wformat-extra-args] 159 | fail_unless( compare_files("../tests/data/alignment_file_one_line_per_sequence.aln.snp_sites.aln","some_custom_name.snp_sites.aln" ) == 1 , "Custom name needs extra extension for ALN"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../tests/check-snp-sites.c: In function 'valid_aln_plus_reference_fn': ../tests/check-snp-sites.c:170:175: warning: too many arguments for format [-Wformat-extra-args] 170 | fail_unless( compare_files("../tests/data/alignment_file_one_line_per_sequence_reference.snp_sites.aln","alignment_file_one_line_per_sequence.aln.snp_sites.aln" ) == 1 ,"Invalid ALN file for multiple lines per seq"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../tests/check-snp-sites.c: In function 'valid_phylip_plus_reference_fn': ../tests/check-snp-sites.c:178:163: warning: too many arguments for format [-Wformat-extra-args] 178 | fail_unless( compare_files("../tests/data/alignment_file_one_line_per_sequence_reference.aln.phylip", "alignment_file_one_line_per_sequence.aln.phylip" ) == 1, "invalid phylib with reference" ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CC --mode=link gcc -pthread -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib -o run-all-tests ../tests/run_all_tests-check-snp-sites.o ../tests/run_all_tests-check-vcf.o ../tests/run_all_tests-helper-methods.o ../tests/run_all_tests-run-all-tests.o libsnp-sites.la -lpthread -lcheck_pic -pthread -lrt -lm -lsubunit -lz -lm libtool: link: gcc -pthread -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/snp-sites-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/run-all-tests ../tests/run_all_tests-check-snp-sites.o ../tests/run_all_tests-check-vcf.o ../tests/run_all_tests-helper-methods.o ../tests/run_all_tests-run-all-tests.o -pthread -L/usr/lib ./.libs/libsnp-sites.so -lpthread -lcheck_pic -lrt -lsubunit -lz -lm -pthread make[3]: Leaving directory '/build/snp-sites-2.5.1/src' make check-TESTS make[3]: Entering directory '/build/snp-sites-2.5.1/src' make[4]: Entering directory '/build/snp-sites-2.5.1/src' PASS: run-all-tests ============================================================================ Testsuite summary for snp-sites 2.5.1 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/build/snp-sites-2.5.1/src' make[3]: Leaving directory '/build/snp-sites-2.5.1/src' make[2]: Leaving directory '/build/snp-sites-2.5.1/src' make[2]: Entering directory '/build/snp-sites-2.5.1' make[2]: Leaving directory '/build/snp-sites-2.5.1' make[1]: Leaving directory '/build/snp-sites-2.5.1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with autoreconf dh_testroot dh_prep dh_auto_install make -j1 install DESTDIR=/build/snp-sites-2.5.1/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/snp-sites-2.5.1' Making install in src make[2]: Entering directory '/build/snp-sites-2.5.1/src' make[3]: Entering directory '/build/snp-sites-2.5.1/src' /bin/mkdir -p '/build/snp-sites-2.5.1/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libsnp-sites.la '/build/snp-sites-2.5.1/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libsnp-sites.so.1.0.0 /build/snp-sites-2.5.1/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.so.1.0.0 libtool: install: (cd /build/snp-sites-2.5.1/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libsnp-sites.so.1.0.0 libsnp-sites.so.1 || { rm -f libsnp-sites.so.1 && ln -s libsnp-sites.so.1.0.0 libsnp-sites.so.1; }; }) libtool: install: (cd /build/snp-sites-2.5.1/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libsnp-sites.so.1.0.0 libsnp-sites.so || { rm -f libsnp-sites.so && ln -s libsnp-sites.so.1.0.0 libsnp-sites.so; }; }) libtool: install: /usr/bin/install -c .libs/libsnp-sites.lai /build/snp-sites-2.5.1/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.la libtool: install: /usr/bin/install -c .libs/libsnp-sites.a /build/snp-sites-2.5.1/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.a libtool: install: chmod 644 /build/snp-sites-2.5.1/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.a libtool: install: ranlib /build/snp-sites-2.5.1/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.a libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /bin/mkdir -p '/build/snp-sites-2.5.1/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c snp-sites '/build/snp-sites-2.5.1/debian/tmp/usr/bin' libtool: warning: 'libsnp-sites.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/snp-sites /build/snp-sites-2.5.1/debian/tmp/usr/bin/snp-sites /bin/mkdir -p '/build/snp-sites-2.5.1/debian/tmp/usr/include/snp-sites' /usr/bin/install -c -m 644 alignment-file.h vcf.h phylib-of-snp-sites.h snp-sites.h fasta-of-snp-sites.h kseq.h '/build/snp-sites-2.5.1/debian/tmp/usr/include/snp-sites' make[3]: Leaving directory '/build/snp-sites-2.5.1/src' make[2]: Leaving directory '/build/snp-sites-2.5.1/src' make[2]: Entering directory '/build/snp-sites-2.5.1' make[3]: Entering directory '/build/snp-sites-2.5.1' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/snp-sites-2.5.1' make[2]: Leaving directory '/build/snp-sites-2.5.1' make[1]: Leaving directory '/build/snp-sites-2.5.1' debian/rules override_dh_install make[1]: Entering directory '/build/snp-sites-2.5.1' dh_install d-shlibmove --commit \ --multiarch \ --exclude-la \ --movedev "debian/tmp/usr/include/snp-sites/*.h" usr/include/snp-sites \ debian/tmp/usr/lib/*/libsnp-sites.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libsnp-sites1-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libsnp-sites1/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.a debian/libsnp-sites1-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.so debian/libsnp-sites1-dev/usr/lib/aarch64-linux-gnu mv /build/snp-sites-2.5.1/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.so.1 debian/libsnp-sites1/usr/lib/aarch64-linux-gnu mv /build/snp-sites-2.5.1/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.so.1.0.0 debian/libsnp-sites1/usr/lib/aarch64-linux-gnu PKGDEV=libsnp-sites1-dev PKGSHL=libsnp-sites1 install -d -m 755 debian/libsnp-sites1-dev/usr/include/snp-sites mv debian/tmp/usr/include/snp-sites/*.h debian/libsnp-sites1-dev/usr/include/snp-sites make[1]: Leaving directory '/build/snp-sites-2.5.1' dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/snp-sites-2.5.1' mkdir -p /build/snp-sites-2.5.1/debian/man asciidoctor -a docdate='' -b manpage /build/snp-sites-2.5.1/snp-sites.txt mv /build/snp-sites-2.5.1/snp-sites.1 /build/snp-sites-2.5.1/debian/man dh_installman -- make[1]: Leaving directory '/build/snp-sites-2.5.1' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/snp-sites/usr/bin/snp-sites was not linked against libpthread.so.0 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libsnp-sites1-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libsnp-sites1-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'snp-sites-dbgsym' in '../snp-sites-dbgsym_2.5.1-1_arm64.deb'. dpkg-deb: building package 'libsnp-sites1-dbgsym' in '../libsnp-sites1-dbgsym_2.5.1-1_arm64.deb'. dpkg-deb: building package 'libsnp-sites1' in '../libsnp-sites1_2.5.1-1_arm64.deb'. dpkg-deb: building package 'snp-sites' in '../snp-sites_2.5.1-1_arm64.deb'. dpkg-deb: building package 'libsnp-sites1-dev' in '../libsnp-sites1-dev_2.5.1-1_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../snp-sites_2.5.1-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/18308 and its subdirectories I: Current time: Thu Sep 15 23:12:44 -12 2022 I: pbuilder-time-stamp: 1663326764 Sat Aug 14 04:49:47 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink10-arm64.debian.net. Sat Aug 14 04:49:47 UTC 2021 I: Preparing to do remote build '2' on codethink10-arm64.debian.net. Sat Aug 14 04:51:39 UTC 2021 I: Deleting $TMPDIR on codethink10-arm64.debian.net. Sat Aug 14 04:51:40 UTC 2021 I: snp-sites_2.5.1-1_arm64.changes: Format: 1.8 Date: Wed, 23 Oct 2019 18:43:51 +0200 Source: snp-sites Binary: libsnp-sites1 libsnp-sites1-dbgsym libsnp-sites1-dev snp-sites snp-sites-dbgsym Architecture: arm64 Version: 2.5.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Sascha Steinbiss Description: libsnp-sites1 - Shared libraries of the package snp-sites libsnp-sites1-dev - Static libraries and header files for the package snp-sites snp-sites - Binary code for the package snp-sites Changes: snp-sites (2.5.1-1) unstable; urgency=medium . [ Andreas Tille ] * Fix EDAM syntax. . [ Steffen Moeller ] * Perform yamllint. . [ Sascha Steinbiss ] * New upstream release. Checksums-Sha1: 01ef68f3d7a1b6cb8b8f85b1eedadad9efe0b094 21996 libsnp-sites1-dbgsym_2.5.1-1_arm64.deb 326dedf06d75cd06c51de9d1459ca21d1e9ccc03 17636 libsnp-sites1-dev_2.5.1-1_arm64.deb 661497a67bf6e1638fcd0853dea3b8f0ed146b25 14060 libsnp-sites1_2.5.1-1_arm64.deb 5e8e0400c8928052746cd7cc29177fb6c142aec1 6704 snp-sites-dbgsym_2.5.1-1_arm64.deb 3058ce5cf140fe595c62d14493b7886d2dfaa7ee 6804 snp-sites_2.5.1-1_arm64.buildinfo 5700dbc5d0312b77d510923c5f460597a90e993f 14144 snp-sites_2.5.1-1_arm64.deb Checksums-Sha256: 2840622b8a7a269a114c6b18a4e4c287eefdfb27b9c08ecd0243947c7809d96f 21996 libsnp-sites1-dbgsym_2.5.1-1_arm64.deb 4eef64b7cf47e72e3c2bf16300e5643f8d6aaf5c99fe64c219977fe9cdfeb137 17636 libsnp-sites1-dev_2.5.1-1_arm64.deb f0828d51e6b962025f69e09b638f2683cf4f4638c3359fbeb1d8a4c5b898c312 14060 libsnp-sites1_2.5.1-1_arm64.deb c3955c7b5caff90b1575cdca33107036cd2613a96b4d059a747d1dfe90be6840 6704 snp-sites-dbgsym_2.5.1-1_arm64.deb e6b5e4bffda351a2c7e8c7f1b7686cc45fa96b32d32129f7c6344452900b1cee 6804 snp-sites_2.5.1-1_arm64.buildinfo 5bfb88ab8be23b7d9b06424be115fe890a9191bf108225006fcd123d2b365098 14144 snp-sites_2.5.1-1_arm64.deb Files: 44ea2fe4d029d69546a1a9014ad133d9 21996 debug optional libsnp-sites1-dbgsym_2.5.1-1_arm64.deb 4d592ecc3ba2fb52ed7d84cf32a3659c 17636 libdevel optional libsnp-sites1-dev_2.5.1-1_arm64.deb b60db74261ba8ddc57bf405a09980c25 14060 libs optional libsnp-sites1_2.5.1-1_arm64.deb 6231b0f03864f67c79f0927321eb2377 6704 debug optional snp-sites-dbgsym_2.5.1-1_arm64.deb 5706af8f38f0e5ba38f390c526df21d1 6804 science optional snp-sites_2.5.1-1_arm64.buildinfo 53b4bcfb552ca56cd76e990838e044e0 14144 science optional snp-sites_2.5.1-1_arm64.deb Sat Aug 14 04:51:41 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.7D3gj6Alg0/snp-sites_2.5.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.7D3gj6Alg0/snp-sites_2.5.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.7D3gj6Alg0/snp-sites_2.5.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.7D3gj6Alg0/b1/snp-sites_2.5.1-1_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.7D3gj6Alg0/b2/snp-sites_2.5.1-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.272s) 0.272s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.019s) 0.019s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Sat Aug 14 04:51:43 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Sat Aug 14 04:51:43 UTC 2021 I: snp-sites from bullseye built successfully and reproducibly on arm64. Sat Aug 14 04:51:44 UTC 2021 I: Submitting .buildinfo files to external archives: Sat Aug 14 04:51:44 UTC 2021 I: Submitting 8.0K b1/snp-sites_2.5.1-1_arm64.buildinfo.asc Sat Aug 14 04:51:45 UTC 2021 I: Submitting 8.0K b2/snp-sites_2.5.1-1_arm64.buildinfo.asc Sat Aug 14 04:51:46 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Aug 14 04:51:46 UTC 2021 I: Done submitting .buildinfo files. Sat Aug 14 04:51:46 UTC 2021 I: Removing signed snp-sites_2.5.1-1_arm64.buildinfo.asc files: removed './b1/snp-sites_2.5.1-1_arm64.buildinfo.asc' removed './b2/snp-sites_2.5.1-1_arm64.buildinfo.asc'