Thu Jul 8 22:29:37 UTC 2021 I: starting to build libfreecontact-perl/bullseye/arm64 on jenkins on '2021-07-08 22:29' Thu Jul 8 22:29:37 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_13/1690/console.log Thu Jul 8 22:29:37 UTC 2021 I: Downloading source for bullseye/libfreecontact-perl=0.08-8 --2021-07-08 22:29:38-- http://cdn-fastly.deb.debian.org/debian/pool/main/libf/libfreecontact-perl/libfreecontact-perl_0.08-8.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2173 (2.1K) Saving to: ‘libfreecontact-perl_0.08-8.dsc’ 0K .. 100% 13.0M=0s 2021-07-08 22:29:38 (13.0 MB/s) - ‘libfreecontact-perl_0.08-8.dsc’ saved [2173/2173] Thu Jul 8 22:29:38 UTC 2021 I: libfreecontact-perl_0.08-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libfreecontact-perl Binary: libfreecontact-perl Architecture: any Version: 0.08-8 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille Homepage: https://rostlab.org/owiki/index.php/FreeContact Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/libfreecontact-perl Vcs-Git: https://salsa.debian.org/med-team/libfreecontact-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13), libextutils-xspp-perl, libfreecontact-dev, perl Package-List: libfreecontact-perl deb perl optional arch=any Checksums-Sha1: dea098c8025b42e79227265dd74252ceedbfa007 58672 libfreecontact-perl_0.08.orig.tar.gz 5cb49a202fa96cce76774dcad74598a2cea8e888 4096 libfreecontact-perl_0.08-8.debian.tar.xz Checksums-Sha256: 7386762985b9e36ec13379948528f1f18e49cf799ba5436a46aa60e9cb041911 58672 libfreecontact-perl_0.08.orig.tar.gz e4f96866f7293ad175378438e28ecd0a9f76c1e41b24cff780057e37ac8130f2 4096 libfreecontact-perl_0.08-8.debian.tar.xz Files: 798e25cfc3954e027d208f62dd3fe6ea 58672 libfreecontact-perl_0.08.orig.tar.gz 841f4d02cb93ed0ed33a743e993eeedd 4096 libfreecontact-perl_0.08-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl+9HCsRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFHDg//WhWM1ZcYxkcR6d2yYgjpznzAlcl6//ex 7ybfzM9S/r0D2R9fLzFjDQZEETTJdk0/HvW0F99Rqk5M7Kjt55UqirmteECkJtth nEsSc++QJlGGcPJfOFsPo0DBUTrppo6TrW1narwvHCTRm6pNmO8uE1cmIVvwD8KB VwkQK4Bd8AhUNCV9qSWq8xk+fAeAneXftyUdByiVPZupmcElQVOe8zfJrb3fDpP7 uIKdr7RC8vVOSlohmo1LVXI4+IKhAgcHxV++5JOh2ejzQNq/CfkT9sDRYEehhVPA 3q73dNthzOiNjAEL5cJhrvYgnao4lSe6ACks9OfvHhg3B3JBgxTXtpNaxrAKYbZW /YykLOi5oc4cG0D55AoXXNHf1Hfff6j8McHxqrL9G/wot+bMNyZFRDMGFo/hHhhE TqmYodCBksRkegtB2Nyb6go6haKPe9Xn1OpZ765wyibPvmSwZ1ErFS4Rpr5B3+wy 9WHOxjRzjaAq+Zc9pXNzVGQufaQk2X9lcM/+WbLti35iF/+w2/G3ngXZmBrQol5b t0AlGma20lbuMXy1HrgVHkuc7Yh54Fds5ukRcrxFGB+niN7243V9/jhyoSyIrOXC kdkIoY95YHjMRIqPFUeIGEToo+Dzl5NuJXKQlH5luHXMvIgftKVYSynlw8QkVUHt OgmwwzF8m7w= =bT2s -----END PGP SIGNATURE----- Thu Jul 8 22:29:38 UTC 2021 I: Checking whether the package is not for us Thu Jul 8 22:29:38 UTC 2021 I: Starting 1st build on remote node codethink12-arm64.debian.net. Thu Jul 8 22:29:38 UTC 2021 I: Preparing to do remote build '1' on codethink12-arm64.debian.net. Thu Jul 8 22:31:51 UTC 2021 I: Deleting $TMPDIR on codethink12-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jul 8 10:29:42 -12 2021 I: pbuilder-time-stamp: 1625783382 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libfreecontact-perl_0.08-8.dsc] I: copying [./libfreecontact-perl_0.08.orig.tar.gz] I: copying [./libfreecontact-perl_0.08-8.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.DYinyJvX/trustedkeys.kbx': General error gpgv: Signature made Tue Nov 24 02:43:55 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libfreecontact-perl_0.08-8.dsc dpkg-source: info: extracting libfreecontact-perl in libfreecontact-perl-0.08 dpkg-source: info: unpacking libfreecontact-perl_0.08.orig.tar.gz dpkg-source: info: unpacking libfreecontact-perl_0.08-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Fix-timing-initialization.patch dpkg-source: info: applying missing-use-carp.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/18863/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='18863' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.X7PeLkfnGZ/pbuilderrc_DEjb --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.X7PeLkfnGZ/b1 --logfile b1/build.log libfreecontact-perl_0.08-8.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink12-arm64 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:18:37 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Jun 21 14:26 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Feb 7 02:38 more -rwsr-xr-x 1 root root 51360 Feb 7 02:38 mount -rwxr-xr-x 1 root root 14496 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 6 21:24 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Feb 7 02:38 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 21:55 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30880 Feb 7 02:38 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/18863/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libextutils-xspp-perl, libfreecontact-dev, perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libextutils-xspp-perl; however: Package libextutils-xspp-perl is not installed. pbuilder-satisfydepends-dummy depends on libfreecontact-dev; however: Package libfreecontact-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1{a} libextutils-xspp-perl{a} libfile-stripnondeterminism-perl{a} libfreecontact-dev{a} libfreecontact0v5{a} libgfortran5{a} libicu67{a} liblapack3{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 37 newly installed, 0 to remove and 0 not upgraded. Need to get 20.2 MB of archives. After unpacking 75.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 libblas3 arm64 3.9.0-3 [101 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 libextutils-xspp-perl all 0.1800-2.1 [191 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libgfortran5 arm64 10.2.1-6 [333 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 liblapack3 arm64 3.9.0-3 [1541 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libfreecontact0v5 arm64 1.0.21-9 [66.8 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 libfreecontact-dev arm64 1.0.21-9 [78.3 kB] Fetched 20.2 MB in 1s (19.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_arm64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../01-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../03-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../05-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../07-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.39-3_arm64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../09-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../10-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... 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Setting up file (1:5.39-3) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libsigsegv2:arm64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libgfortran5:arm64 (10.2.1-6) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:arm64 (0.183-1) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.7) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up liblapack3:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.21-4) ... Setting up libfreecontact0v5:arm64 (1.0.21-9) ... Setting up libtool (2.4.6-15) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfreecontact-dev (1.0.21-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up debhelper (13.3.4) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/libfreecontact-perl-0.08/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libfreecontact-perl_0.08-8_source.changes dpkg-buildpackage: info: source package libfreecontact-perl dpkg-buildpackage: info: source version 0.08-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/libfreecontact-perl-0.08' rm -f Makefile.old dh_auto_clean make[1]: Leaving directory '/build/libfreecontact-perl-0.08' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/libfreecontact-perl-0.08' dh_auto_configure -- OPTIMIZE="-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libfreecontact-perl-0.08=. -fstack-protector-strong -Wformat -Werror=format-security" LD="'aarch64-linux-gnu-gcc' -Wl,-z,relro -Wl,-z,now" perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -fdebug-prefix-map=/build/libfreecontact-perl-0.08=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/build/libfreecontact-perl-0.08=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now" "OPTIMIZE=-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libfreecontact-perl-0.08=. -fstack-protector-strong -Wformat -Werror=format-security" "LD='aarch64-linux-gnu-gcc' -Wl,-z,relro -Wl,-z,now" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for FreeContact Writing MYMETA.yml and MYMETA.json make[1]: Leaving directory '/build/libfreecontact-perl-0.08' dh_auto_build make -j8 make[1]: Entering directory '/build/libfreecontact-perl-0.08' Running Mkbootstrap for FreeContact () "/usr/bin/perl" "/usr/share/perl/5.32/ExtUtils/xsubpp" -C++ -hiertype -noprototypes -typemap '/usr/share/perl/5.32/ExtUtils/typemap' -typemap '/build/libfreecontact-perl-0.08/perlobject.map' -typemap '/build/libfreecontact-perl-0.08/typemap' -typemap '/build/libfreecontact-perl-0.08/typemap' FreeContact.xs > FreeContact.xsc chmod 644 "FreeContact.bs" "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- FreeContact.bs blib/arch/auto/FreeContact/FreeContact.bs 644 cp lib/FreeContact.pm blib/lib/FreeContact.pm AutoSplitting blib/lib/FreeContact.pm (blib/lib/auto/FreeContact) mv FreeContact.xsc FreeContact.c g++ -c -I. -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libfreecontact-perl-0.08=. -fstack-protector-strong -Wformat -Werror=format-security -DVERSION=\"0.08\" -DXS_VERSION=\"0.08\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.32/CORE" FreeContact.c rm -f blib/arch/auto/FreeContact/FreeContact.so 'aarch64-linux-gnu-gcc' -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong FreeContact.o -o blib/arch/auto/FreeContact/FreeContact.so \ -lfreecontact \ chmod 755 blib/arch/auto/FreeContact/FreeContact.so Manifying 1 pod document make[1]: Leaving directory '/build/libfreecontact-perl-0.08' dh_auto_test make -j8 test TEST_VERBOSE=1 make[1]: Entering directory '/build/libfreecontact-perl-0.08' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- FreeContact.bs blib/arch/auto/FreeContact/FreeContact.bs 644 PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/01FreeContact.t .. 1..3 ok 1 - use FreeContact; ok 2 - FreeContact->can(...) ok 3 - FreeContact::Predictor->can(...) ok will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 seq weight loop for 1000 seqs took 0.022238 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.25557 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936351, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 11.5764 secs, inverted matrix (incl LUf) in 35.0466 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987034975652 collected apc_mean[fro] = 3.35437753102448 all done in 35.6304 secs will use 1 OMP threads total weight (variation) of alignment = 561.595172234625 seq weight loop for 1000 seqs took 0.021667 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.242723 secs collected apc_mean[MI] = 0.165528914074767 aa freq sum (cell) = 0.999993945475299, pairfreq sum (cell) = 0.999988196197513 formed covariance matrix (126/126,4) cov matrix Cholesky... not positive definite, dmean dev: 0.0457782 cov matrix Cholesky... not positive definite, dmean dev: 0.0412004 cov matrix Cholesky... not positive definite, dmean dev: 0.0370804 cov matrix Cholesky... not positive definite, dmean dev: 0.0333723 cov matrix Cholesky... not positive definite, dmean dev: 0.0300351 cov matrix Cholesky... not positive definite, dmean dev: 0.0270316 cov matrix Cholesky... not positive definite, dmean dev: 0.0243284 cov matrix Cholesky... not positive definite, dmean dev: 0.0218956 cov matrix Cholesky... not positive definite, dmean dev: 0.019706 cov matrix Cholesky... not positive definite, dmean dev: 0.0177354 cov matrix Cholesky... not positive definite, dmean dev: 0.0159619 cov matrix Cholesky... not positive definite, dmean dev: 0.0143657 cov matrix Cholesky... not positive definite, dmean dev: 0.0129291 cov matrix Cholesky... shrank covariance matrix in 17.143 secs will try rho 0.00178064, exact solution  iteration = 1will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.255727 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936351, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 10.837 secs, inverted matrix (incl LUf) in 33.2761 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987034975652 collected apc_mean[fro] = 3.35437753102448 t/02test.t ......... 1..10 ok 1 - use FreeContact; ok 2 - An object of class 'FreeContact::Predictor' isa 'FreeContact::Predictor' ok 3 ok 4 ok 5 - precision test ok 6 - timing results test ok 7 ok 8 ok 9 - wtot test ok 10 - wtot precision test ok All tests successful. Files=2, Tests=13, 89 wallclock secs ( 0.05 usr 0.02 sys + 89.30 cusr 0.28 csys = 89.65 CPU) Result: PASS make[1]: Leaving directory '/build/libfreecontact-perl-0.08' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j8 install DESTDIR=/build/libfreecontact-perl-0.08/debian/libfreecontact-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/libfreecontact-perl-0.08' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- FreeContact.bs blib/arch/auto/FreeContact/FreeContact.bs 644 Manifying 1 pod document Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /build/libfreecontact-perl-0.08/debian/libfreecontact-perl/usr/lib/aarch64-linux-gnu/perl5/5.32/auto/FreeContact/FreeContact.so Installing /build/libfreecontact-perl-0.08/debian/libfreecontact-perl/usr/lib/aarch64-linux-gnu/perl5/5.32/FreeContact.pm Installing /build/libfreecontact-perl-0.08/debian/libfreecontact-perl/usr/lib/aarch64-linux-gnu/perl5/5.32/auto/FreeContact/autosplit.ix Installing /build/libfreecontact-perl-0.08/debian/libfreecontact-perl/usr/share/man/man3/FreeContact.3pm make[1]: Leaving directory '/build/libfreecontact-perl-0.08' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb debian/rules override_dh_gencontrol make[1]: Entering directory '/build/libfreecontact-perl-0.08' dh_gencontrol -- '-VDescription=FreeContact is a protein residue contact predictor optimized for speed.${Newline}Its input is a multiple sequence alignment. FreeContact can function as an${Newline}accelerated drop-in for the published contact predictors${Newline}EVfold-mfDCA of DS. Marks (2011) and${Newline}PSICOV of D. Jones (2011).${Newline}${Newline}FreeContact is accelerated by a combination of vector instructions, multiple${Newline}threads, and faster implementation of key parts.${Newline}Depending on the alignment, 8-fold or higher speedups are possible.${Newline}${Newline}A sufficiently large alignment is required for meaningful results.${Newline}As a minimum, an alignment with an effective (after-weighting) sequence count${Newline}bigger than the length of the query sequence should be used. Alignments with${Newline}tens of thousands of (effective) sequences are considered good input.${Newline}${Newline}jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite${Newline}can be used to generate the alignments, for example.' make[1]: Leaving directory '/build/libfreecontact-perl-0.08' dh_md5sums dh_builddeb dpkg-deb: building package 'libfreecontact-perl' in '../libfreecontact-perl_0.08-8_arm64.deb'. dpkg-deb: building package 'libfreecontact-perl-dbgsym' in '../libfreecontact-perl-dbgsym_0.08-8_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libfreecontact-perl_0.08-8_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/18863 and its subdirectories I: Current time: Thu Jul 8 10:31:50 -12 2021 I: pbuilder-time-stamp: 1625783510 Thu Jul 8 22:31:51 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink9-arm64.debian.net. Thu Jul 8 22:31:51 UTC 2021 I: Preparing to do remote build '2' on codethink9-arm64.debian.net. Thu Jul 8 22:34:02 UTC 2021 I: Deleting $TMPDIR on codethink9-arm64.debian.net. Thu Jul 8 22:34:03 UTC 2021 I: libfreecontact-perl_0.08-8_arm64.changes: Format: 1.8 Date: Tue, 24 Nov 2020 15:39:22 +0100 Source: libfreecontact-perl Binary: libfreecontact-perl libfreecontact-perl-dbgsym Architecture: arm64 Version: 0.08-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libfreecontact-perl - fast protein contact predictor - binding for Perl Changes: libfreecontact-perl (0.08-8) unstable; urgency=medium . * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Secure URI in copyright format (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Remove obsolete field Contact from debian/upstream/metadata (already present in machine-readable debian/copyright). * watch file standard 4 (routine-update) Checksums-Sha1: c89c4fae85a19762f63199cd289528d966bd3159 158388 libfreecontact-perl-dbgsym_0.08-8_arm64.deb f496dd496e0ed7e6f6347b0de05299c595d0c58c 5115 libfreecontact-perl_0.08-8_arm64.buildinfo 4c2b1faa3bfa8d7e4cc4076424a6cf2365132be8 62448 libfreecontact-perl_0.08-8_arm64.deb Checksums-Sha256: 69fd39bd33a64ea27ea10d4515c140b0da89fee2f4daafc633f943ea4cd3fd58 158388 libfreecontact-perl-dbgsym_0.08-8_arm64.deb 751d09de22835110948bf49667fa4454ec6824b93b60a9793a6236da53149376 5115 libfreecontact-perl_0.08-8_arm64.buildinfo 667f7a0c4d003e595bfd1354c4e486c9f8bcb31c87f637ef29fbf9d2374a57fc 62448 libfreecontact-perl_0.08-8_arm64.deb Files: 886f3b73ce6e55068f6403795a8bc74b 158388 debug optional libfreecontact-perl-dbgsym_0.08-8_arm64.deb 7aa7f19f07c3e4f927ed63b363e1aaf6 5115 perl optional libfreecontact-perl_0.08-8_arm64.buildinfo e56604b1c1f30a8829bb32a14ad9460c 62448 perl optional libfreecontact-perl_0.08-8_arm64.deb Thu Jul 8 22:34:04 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.X7PeLkfnGZ/libfreecontact-perl_0.08-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.X7PeLkfnGZ/libfreecontact-perl_0.08-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.X7PeLkfnGZ/libfreecontact-perl_0.08-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.X7PeLkfnGZ/b1/libfreecontact-perl_0.08-8_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.X7PeLkfnGZ/b2/libfreecontact-perl_0.08-8_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.245s) 0.245s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.020s) 0.020s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Thu Jul 8 22:34:05 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Thu Jul 8 22:34:05 UTC 2021 I: libfreecontact-perl from bullseye built successfully and reproducibly on arm64. Thu Jul 8 22:34:06 UTC 2021 I: Submitting .buildinfo files to external archives: Thu Jul 8 22:34:06 UTC 2021 I: Submitting 8.0K b1/libfreecontact-perl_0.08-8_arm64.buildinfo.asc Thu Jul 8 22:34:08 UTC 2021 I: Submitting 8.0K b2/libfreecontact-perl_0.08-8_arm64.buildinfo.asc Thu Jul 8 22:34:09 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jul 8 22:34:09 UTC 2021 I: Done submitting .buildinfo files. Thu Jul 8 22:34:09 UTC 2021 I: Removing signed libfreecontact-perl_0.08-8_arm64.buildinfo.asc files: removed './b1/libfreecontact-perl_0.08-8_arm64.buildinfo.asc' removed './b2/libfreecontact-perl_0.08-8_arm64.buildinfo.asc'