Wed Jul 28 01:10:03 UTC 2021 I: starting to build libdata-stag-perl/bullseye/arm64 on jenkins on '2021-07-28 01:09' Wed Jul 28 01:10:03 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_30/14956/console.log Wed Jul 28 01:10:03 UTC 2021 I: Downloading source for bullseye/libdata-stag-perl=0.14-2 --2021-07-28 01:10:03-- http://cdn-fastly.deb.debian.org/debian/pool/main/libd/libdata-stag-perl/libdata-stag-perl_0.14-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2301 (2.2K) Saving to: ‘libdata-stag-perl_0.14-2.dsc’ 0K .. 100% 133M=0s 2021-07-28 01:10:03 (133 MB/s) - ‘libdata-stag-perl_0.14-2.dsc’ saved [2301/2301] Wed Jul 28 01:10:03 UTC 2021 I: libdata-stag-perl_0.14-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libdata-stag-perl Binary: libdata-stag-perl Architecture: all Version: 0.14-2 Maintainer: Debian Perl Group Uploaders: Charles Plessy , Damyan Ivanov , Florian Schlichting Homepage: http://stag.sourceforge.net/ Standards-Version: 3.9.8 Vcs-Browser: https://anonscm.debian.org/cgit/pkg-perl/packages/libdata-stag-perl.git Vcs-Git: https://anonscm.debian.org/git/pkg-perl/packages/libdata-stag-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper (>= 9) Build-Depends-Indep: perl, libio-string-perl, libxml-perl, rename Package-List: libdata-stag-perl deb perl optional arch=all Checksums-Sha1: 4146dcbfaccb744832ddc3a8e826feb8606faa28 428107 libdata-stag-perl_0.14.orig.tar.gz 8b705867a5ef708ff75932d4d40d56772d5eed6c 5452 libdata-stag-perl_0.14-2.debian.tar.xz Checksums-Sha256: 4ab122508d2fb86d171a15f4006e5cf896d5facfa65219c0b243a89906258e59 428107 libdata-stag-perl_0.14.orig.tar.gz c164e3d94c923de0df73fcba65b870d9abc34ab2e1b70f62b9b0d5ad1e7cca68 5452 libdata-stag-perl_0.14-2.debian.tar.xz Files: f803acf74f1bfccc118aeac5483ee871 428107 libdata-stag-perl_0.14.orig.tar.gz e9d12235ea2d356939488baafc6b9855 5452 libdata-stag-perl_0.14-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQJ8BAEBCgBmBQJXS2iaXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXREMUUxMzE2RTkzQTc2MEE4MTA0RDg1RkFC QjNBNjgwMTg2NDlBQTA2AAoJELs6aAGGSaoGdeoP/RaO8LELeyzB20S9PhaO/rR3 P4E2qs8cjvn75QiKM5eWviqAMnf0CDAvjWDyL15JdUuYsKPdHCU+Gy67SxkKfrte TkEau13JDbphUvaXNSmp5BCChiVJTpqBPdJJEK2R4gEn3e5u224DUB2jNySI9CDU thL8UgIAZuTDeYNrFaAJozjYRvUUzs/jltLUw98WkIlZLFuP/p47WNd8n/EOUtAR cXq0n8x93q3khBPEmsvxSmrEFV2hQkyT7yZ6/HjaSOKY0+GoyTf/1FOp5EUucVhh CQYf7UHfSUWSNbuNidRB+oSUj396GBsx+lljLbTUMQp93OYsZasxFxmYAGehvE7b 5QAOtgZlOnIx5umRet9Hc/E4w4yl9suJyAmkrTMdvsszkCqLw8WV4ummw/hh78+O zn20VcTWpxJNiaEMjODsF91wpZCJDN079LBVHwJUwvuEPnS4iQcth1ig1qp0ZLpi e4b3p7Z5yMK3DHCIKIir8cpiYgRs/LdVu5vXyq+vmDvn7JZqacpZhYKnz8kBvmCx sRpg3wypuaQ3/Ewa5Pf9S4IQ5YAOg3gCvp1eFXSXYP/m+zgeluGPyBnXur1mHRPH 9JWWToa5FmJsN07M8SmY3xMichsHUIZVYMIr+AOyPlC3O1d85jf1tkn6F8CT2lKJ iT7gwNxd57sbvzhZNhjs =6oKo -----END PGP SIGNATURE----- Wed Jul 28 01:10:03 UTC 2021 I: Checking whether the package is not for us Wed Jul 28 01:10:03 UTC 2021 I: Starting 1st build on remote node codethink16-arm64.debian.net. Wed Jul 28 01:10:03 UTC 2021 I: Preparing to do remote build '1' on codethink16-arm64.debian.net. Wed Jul 28 01:10:55 UTC 2021 I: Deleting $TMPDIR on codethink16-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jul 27 13:10:05 -12 2021 I: pbuilder-time-stamp: 1627434605 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libdata-stag-perl_0.14-2.dsc] I: copying [./libdata-stag-perl_0.14.orig.tar.gz] I: copying [./libdata-stag-perl_0.14-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.1ogjcS79/trustedkeys.kbx': General error gpgv: Signature made Sun May 29 10:09:30 2016 -12 gpgv: using RSA key BB3A68018649AA06 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libdata-stag-perl_0.14-2.dsc dpkg-source: info: extracting libdata-stag-perl in libdata-stag-perl-0.14 dpkg-source: info: unpacking libdata-stag-perl_0.14.orig.tar.gz dpkg-source: info: unpacking libdata-stag-perl_0.14-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_manpage_names.patch dpkg-source: info: applying no-sf-logo.patch dpkg-source: info: applying fix_pod_errors.patch dpkg-source: info: applying more_pod_errors.patch dpkg-source: info: applying more_spelling_fixes.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/11075/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='11075' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.YLYMjPHaCW/pbuilderrc_RSen --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.YLYMjPHaCW/b1 --logfile b1/build.log libdata-stag-perl_0.14-2.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink16-arm64 4.15.0-151-generic #157-Ubuntu SMP Fri Jul 9 21:03:48 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Jun 21 14:26 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Feb 7 02:38 more -rwsr-xr-x 1 root root 51360 Feb 7 02:38 mount -rwxr-xr-x 1 root root 14496 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 25 21:24 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Feb 7 02:38 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 21:55 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30880 Feb 7 02:38 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/11075/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 9), perl, libio-string-perl, libxml-perl, rename dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 9); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libio-string-perl; however: Package libio-string-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-perl; however: Package libxml-perl is not installed. pbuilder-satisfydepends-dummy depends on rename; however: Package rename is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libencode-locale-perl{a} libexpat1{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu67{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1{a} libnet-http-perl{a} libnet-ssleay-perl{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml-parser-perl{a} libxml-perl{a} libxml2{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} rename{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libclone-perl libdata-dump-perl libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libio-stringy-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libpod-parser-perl lynx wget 0 packages upgraded, 60 newly installed, 0 to remove and 0 not upgraded. Need to get 20.8 MB of archives. After unpacking 74.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 netbase all 6.3 [19.9 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 openssl arm64 1.1.1k-1 [829 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 ca-certificates all 20210119 [158 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 libencode-locale-perl all 1.05-1.1 [13.2 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libhttp-date-perl all 6.05-1 [10.4 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 libfile-listing-perl all 6.14-1 [12.4 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 libhtml-tagset-perl all 3.20-4 [13.0 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 liburi-perl all 5.08-1 [90.6 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 libhtml-parser-perl arm64 3.75-1+b1 [103 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 libhtml-tree-perl all 5.07-2 [213 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 libio-html-perl all 1.004-2 [16.1 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 liblwp-mediatypes-perl all 6.04-1 [19.9 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 libhttp-message-perl all 6.28-1 [79.6 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 perl-openssl-defaults arm64 5 [7360 B] Get: 50 http://deb.debian.org/debian bullseye/main arm64 libnet-ssleay-perl arm64 1.88-3+b1 [316 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 libio-socket-ssl-perl all 2.069-1 [215 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 libio-string-perl all 1.08-3.1 [11.8 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 libnet-http-perl all 6.20-1 [25.1 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 libwww-perl all 6.52-1 [192 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 libxml-parser-perl arm64 2.46-2 [205 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 libxml-perl all 0.08-3.1 [93.9 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 rename all 1.13-1 [18.0 kB] Fetched 20.8 MB in 0s (46.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_arm64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../01-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_arm64.deb ... 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Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libhttp-date-perl (6.05-1) ... Setting up gettext (0.21-4) ... Setting up libfile-listing-perl (6.14-1) ... Setting up libtool (2.4.6-15) ... Setting up libnet-http-perl (6.20-1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libhtml-parser-perl (3.75-1+b1) ... Setting up libio-socket-ssl-perl (2.069-1) ... Setting up libhttp-message-perl (6.28-1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up debhelper (13.3.4) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up libwww-perl (6.52-1) ... Setting up libxml-parser-perl:arm64 (2.46-2) ... Setting up libxml-perl (0.08-3.1) ... Processing triggers for libc-bin (2.31-13) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/libdata-stag-perl-0.14/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libdata-stag-perl_0.14-2_source.changes dpkg-buildpackage: info: source package libdata-stag-perl dpkg-buildpackage: info: source version 0.14-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by gregor herrmann dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean dh: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_clean dh_clean: warning: Compatibility levels before 10 are deprecated (level 9 in use) debian/rules build dh build dh: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_update_autotools_config dh_auto_configure dh_auto_configure: warning: Compatibility levels before 10 are deprecated (level 9 in use) perl -I. Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -fdebug-prefix-map=/build/libdata-stag-perl-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/build/libdata-stag-perl-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro" External Module MLDBM, multilevel hash store, is not installed on this computer. Data::Stag::StagDB in Data::Stag needs it for indexing stag nodes External Module Graph::Directed, Generic Graph data stucture and algorithms, is not installed on this computer. Data::Stag::GraphHandler in Data::Stag needs it for transforming stag trees to graphs External Module XML::LibXSLT, XSLT, is not installed on this computer. Data::Stag::XSLTHandler in Data::Stag needs it for XSLT Transformations External Module Tk, Tk, is not installed on this computer. stag-view.pl in Data::Stag needs it for tree viewer External Module GD, Graphical Drawing Toolkit, is not installed on this computer. stag-drawtree.pl in Data::Stag needs it for drawing trees External Module JSON, JSON parser and writer, is not installed on this computer. Data::Stag::JSONWriter in Data::Stag needs it for Writing JSON Information: There are some external packages and perl modules, listed above, which stag uses. This only effects the functionality which is listed above: the rest of stag will work fine, which includes nearly all of the core functionality. Enjoy the rest of stag, which you can use after going 'make install' Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Data Writing MYMETA.yml and MYMETA.json dh_auto_build dh_auto_build: warning: Compatibility levels before 10 are deprecated (level 9 in use) make -j1 make[1]: Entering directory '/build/libdata-stag-perl-0.14' cp Data/Stag/XSLHandler.pm blib/lib/Data/Stag/XSLHandler.pm cp Data/Stag/XSLTHandler.pm blib/lib/Data/Stag/XSLTHandler.pm cp Data/Stag/XMLWriter.pm blib/lib/Data/Stag/XMLWriter.pm cp Data/Stag/StagI.pm blib/lib/Data/Stag/StagI.pm cp Data/Stag/ITextParser.pm blib/lib/Data/Stag/ITextParser.pm cp Data/Stag/Base.pm blib/lib/Data/Stag/Base.pm cp Data/Stag/SAX2Stag.pm blib/lib/Data/Stag/SAX2Stag.pm cp Data/Stag/IndentParser.pm blib/lib/Data/Stag/IndentParser.pm cp Data/Stag/SxprWriter.pm blib/lib/Data/Stag/SxprWriter.pm cp Data/Stag/BaseHandler.pm blib/lib/Data/Stag/BaseHandler.pm cp Data/Stag/StagImpl.pm blib/lib/Data/Stag/StagImpl.pm cp Data/Stag/ITextWriter.pm blib/lib/Data/Stag/ITextWriter.pm cp Data/Stag/ChainHandler.pm blib/lib/Data/Stag/ChainHandler.pm cp Data/Stag/GraphHandler.pm blib/lib/Data/Stag/GraphHandler.pm cp Data/Stag/XMLParser.pm blib/lib/Data/Stag/XMLParser.pm cp Data/Stag/Writer.pm blib/lib/Data/Stag/Writer.pm cp Data/Stag/IndentWriter.pm blib/lib/Data/Stag/IndentWriter.pm cp Data/Stag/BaseGenerator.pm blib/lib/Data/Stag/BaseGenerator.pm cp Data/Stag/DTDWriter.pm blib/lib/Data/Stag/DTDWriter.pm cp Data/Stag/Simple.pm blib/lib/Data/Stag/Simple.pm cp Data/Stag/null.pm blib/lib/Data/Stag/null.pm cp Data/Stag/Arr2HTML.pm blib/lib/Data/Stag/Arr2HTML.pm cp Data/Stag/Util.pm blib/lib/Data/Stag/Util.pm cp Data/Stag/SxprParser.pm blib/lib/Data/Stag/SxprParser.pm cp Data/Stag/StagDB.pm blib/lib/Data/Stag/StagDB.pm cp Data/Stag/PerlWriter.pm blib/lib/Data/Stag/PerlWriter.pm cp Data/Stag/JSONWriter.pm blib/lib/Data/Stag/JSONWriter.pm cp Data/Stag/HashDB.pm blib/lib/Data/Stag/HashDB.pm cp Data/Stag/PodParser.pm blib/lib/Data/Stag/PodParser.pm cp Data/Stag.pm blib/lib/Data/Stag.pm cp scripts/stag-autoschema.pl blib/script/stag-autoschema.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-autoschema.pl cp scripts/stag-db.pl blib/script/stag-db.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-db.pl cp scripts/stag-diff.pl blib/script/stag-diff.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-diff.pl cp scripts/stag-drawtree.pl blib/script/stag-drawtree.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-drawtree.pl cp scripts/stag-filter.pl blib/script/stag-filter.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-filter.pl cp scripts/stag-findsubtree.pl blib/script/stag-findsubtree.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-findsubtree.pl cp scripts/stag-flatten.pl blib/script/stag-flatten.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-flatten.pl cp scripts/stag-grep.pl blib/script/stag-grep.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-grep.pl cp scripts/stag-handle.pl blib/script/stag-handle.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-handle.pl cp scripts/stag-itext2simple.pl blib/script/stag-itext2simple.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-itext2simple.pl cp scripts/stag-itext2sxpr.pl blib/script/stag-itext2sxpr.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-itext2sxpr.pl cp scripts/stag-itext2xml.pl blib/script/stag-itext2xml.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-itext2xml.pl cp scripts/stag-join.pl blib/script/stag-join.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-join.pl cp scripts/stag-merge.pl blib/script/stag-merge.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-merge.pl cp scripts/stag-mogrify.pl blib/script/stag-mogrify.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-mogrify.pl cp scripts/stag-parse.pl blib/script/stag-parse.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-parse.pl cp scripts/stag-query.pl blib/script/stag-query.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-query.pl cp scripts/stag-splitter.pl blib/script/stag-splitter.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-splitter.pl cp scripts/stag-view.pl blib/script/stag-view.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-view.pl cp scripts/stag-xml2itext.pl blib/script/stag-xml2itext.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-xml2itext.pl Manifying 20 pod documents Manifying 27 pod documents make[1]: Leaving directory '/build/libdata-stag-perl-0.14' dh_auto_test dh_auto_test: warning: Compatibility levels before 10 are deprecated (level 9 in use) make -j1 test TEST_VERBOSE=1 make[1]: Entering directory '/build/libdata-stag-perl-0.14' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/autoschema.t ....... 1..3 # Running under perl version 5.032001 for linux # Current time local: Tue Jul 27 13:10:41 2021 # Current time GMT: Wed Jul 28 01:10:41 2021 # Using Test.pm version 1.31 '(db (species_set (species+ (common_name "VARCHAR\(31\)") (binomial "VARCHAR\(31\)") (tax_id "INT"))) (gene_set (gene+ (symbol "VARCHAR\(15\)") (tax_id "INT") (phenotype* "VARCHAR\(31\)") (GO_term "VARCHAR\(63\)") (map? (cytological (chromosome "INT") (band "VARCHAR\(15\)"))) (synonym "VARCHAR\(7\)"))) (similarity_set (pair+ (symbol+ "VARCHAR\(15\)")))) ok 1 ok 2 ok 3 ok t/chainhandler.t ..... 1..2 # Running under perl version 5.032001 for linux # Current time local: Tue Jul 27 13:10:41 2021 # Current time GMT: Wed Jul 28 01:10:41 2021 # Using Test.pm version 1.31 chainhandler... checking.. ok 1 ok 2 ok t/db.t ............... 1..1 # Running under perl version 5.032001 for linux # Current time local: Tue Jul 27 13:10:41 2021 # Current time GMT: Wed Jul 28 01:10:41 2021 # Using Test.pm version 1.31 lucas george star wars sci-fi ford harrison han solo fisher carrie princess leia hamill mark luke skywalker earl-jones james darth vader prowse david darth vader guiness alec obi-wan kenobi attack of the clones sci-fi mcgregor ewan obi-wan kenobi portman natalie princess amigdala jackson peter braindead horror - - - lord of the rings fantasy lee christopher saruman kellan ian gandalf kurosawa akira seven samurai samurai mifune toshiro Kikuchiyo cameron john terminator sci-fi schwarzenegger arnold terminator terminator2 sci-fi schwarzenegger arnold terminator coen joel barton fink odd turturro john barton fink goodman john charlie meadows coen ethan barton fink odd turturro john barton fink goodman john charlie meadows star wars sci-fi lucas george US han solo ford harrison princess leia fisher carrie luke skywalker hamill mark darth vader earl-jones james prowse david obi-wan kenobi guiness alec attack of the clones sci-fi lucas george US obi-wan kenobi mcgregor ewan princess amigdala portman natalie braindead horror jackson peter new zealand - - - lord of the rings fantasy jackson peter new zealand saruman lee christopher gandalf kellan ian seven samurai samurai kurosawa akira japan Kikuchiyo mifune toshiro terminator sci-fi cameron john US terminator schwarzenegger arnold terminator2 sci-fi cameron john US terminator schwarzenegger arnold barton fink odd coen joel US coen ethan US barton fink turturro john charlie meadows goodman john isa dog mammal isa cat mammal isa mammal animal isa zebra horse isa horse mammal isa unicorn horse isa unicorn imaginary-animal instance-of rover dog instance-of whiskers cat instance-of spot dog parent-of spot rover ok 1 ok t/emptytag.t ......... 1..3 # Running under perl version 5.032001 for linux # Current time local: Tue Jul 27 13:10:42 2021 # Current time GMT: Wed Jul 28 01:10:42 2021 # Using Test.pm version 1.31 foo 0 0 '(a (b "foo") (c "") (d "0") (e "0") (f "")) ok 1 ok 2 4 1 1 4 ok 3 ok t/get.t .............. 1..17 # Running under perl version 5.032001 for linux # Current time local: Tue Jul 27 13:10:42 2021 # Current time GMT: Wed Jul 28 01:10:42 2021 # Using Test.pm version 1.31 ok 1 ok 2 house mouse Mus musculus 10090 fruitfly Drosophila melanogaster 7227 human Homo sapiens 9606 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 HGNC 9606 Hemochromatosis Porphyria variegata iron homeostasis 6 p21.3 Hfe MR2 10090 integral membrane protein S:HGNC Hfe HGNC Hfe WNT3A Wnt3a ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok t/handlers.t ......... 1..9 # Running under perl version 5.032001 for linux # Current time local: Tue Jul 27 13:10:42 2021 # Current time GMT: Wed Jul 28 01:10:42 2021 # Using Test.pm version 1.31 CACHING HGNC CACHING Hfe house mouse Mus musculus 10090 fruitfly Drosophila melanogaster 7227 human Homo sapiens 9606 HGNC 9606 Hemochromatosis Porphyria variegata iron homeostasis 6 p21.3 1 human Homo sapiens 9606 Hfe MR2 10090 integral membrane protein house mouse Mus musculus 10090 HGNC Hfe HGNC 9606 Hemochromatosis Porphyria variegata iron homeostasis 6 p21.3 1 human Homo sapiens 9606 Hfe MR2 10090 integral membrane protein house mouse Mus musculus 10090 WNT3A Wnt3a Dunno what symbol WNT3A is Dunno what symbol Wnt3a is remaining tree: '(db (species_set (species (common_name "house mouse") (binomial "Mus musculus") (tax_id "10090")) (species (common_name "fruitfly") (binomial "Drosophila melanogaster") (tax_id "7227")) (species (common_name "human") (binomial "Homo sapiens") (tax_id "9606"))) (gene_set (gene (symbol "HGNC") (tax_id "9606") (phenotype "Hemochromatosis") (phenotype "Porphyria variegata") (GO_term "iron homeostasis") (map (cytological (chromosome "6") (band "p21.3")) (foo "1")) (species (common_name "human") (binomial "Homo sapiens") (tax_id "9606"))) (gene (symbol "Hfe") (synonym "MR2") (tax_id "10090") (GO_term "integral membrane protein") (species (common_name "house mouse") (binomial "Mus musculus") (tax_id "10090")))) (similarity_set (pair (symbol "HGNC") (symbol "Hfe") (gene (symbol "HGNC") (tax_id "9606") (phenotype "Hemochromatosis") (phenotype "Porphyria variegata") (GO_term "iron homeostasis") (map (cytological (chromosome "6") (band "p21.3")) (foo "1")) (species (common_name "human") (binomial "Homo sapiens") (tax_id "9606"))) (gene (symbol "Hfe") (synonym "MR2") (tax_id "10090") (GO_term "integral membrane protein") (species (common_name "house mouse") (binomial "Mus musculus") (tax_id "10090")))) (pair (symbol "WNT3A") (symbol "Wnt3a") (comment "Dunno what symbol WNT3A is") (comment "Dunno what symbol Wnt3a is")))) HGNC Hfe HGNC 9606 Hemochromatosis Porphyria variegata iron homeostasis 6 p21.3 1 human Homo sapiens 9606 Hfe MR2 10090 integral membrane protein house mouse Mus musculus 10090 WNT3A Wnt3a Dunno what symbol WNT3A is Dunno what symbol Wnt3a is HGNC 9606 Hemochromatosis Porphyria variegata iron homeostasis 6 p21.3 1 human Homo sapiens 9606 Hfe MR2 10090 integral membrane protein house mouse Mus musculus 10090 ok 1 ok 2 ok 3 ok 4 '(gene (symbol "Hfe") (synonym "MR2") (tax_id "10090") (GO_term "integral membrane protein") (species (common_name "house mouse") (binomial "Mus musculus") (tax_id "10090"))) ok 5 ok 6 ok 7 ok 8 ok 9 names=gene_set gene symbol tax_id phenotype phenotype GO_term map cytological chromosome band foo species common_name binomial tax_id gene symbol synonym tax_id GO_term species common_name binomial tax_id =>gene_set gene_set=>gene gene=>symbol gene=>tax_id gene=>phenotype gene=>phenotype gene=>GO_term gene=>map map=>cytological cytological=>chromosome cytological=>band map=>foo gene=>species species=>common_name species=>binomial species=>tax_id gene_set=>gene gene=>symbol gene=>synonym gene=>tax_id gene=>GO_term gene=>species species=>common_name species=>binomial species=>tax_id ok t/handlers2.t ........ 1..9 # Running under perl version 5.032001 for linux # Current time local: Tue Jul 27 13:10:42 2021 # Current time GMT: Wed Jul 28 01:10:42 2021 # Using Test.pm version 1.31 original: house mouse Mus musculus 10090 house mouse Mus musculus 10090 fruitfly Drosophila melanogaster 7227 fruitfly Drosophila melanogaster 7227 human Homo sapiens 9606 human Homo sapiens 9606 remaining tree: '(db (species_set (species (common_name "house mouse") (binomial "Mus musculus") (tax_id "10090")) (species (common_name "house mouse") (binomial "Mus musculus") (tax_id "10090")) (species (common_name "fruitfly") (binomial "Drosophila melanogaster") (tax_id "7227")) (species (common_name "fruitfly") (binomial "Drosophila melanogaster") (tax_id "7227")) (species (common_name "human") (binomial "Homo sapiens") (tax_id "9606")) (species (common_name "human") (binomial "Homo sapiens") (tax_id "9606")))) ok 1 ok 2 ok 3 '( "") '( "") ok 4 ok 5 ok 6 ok 7 ok 8 '(set) ok 9 ok t/hashdb.t ........... 1..2 # Running under perl version 5.032001 for linux # Current time local: Tue Jul 27 13:10:42 2021 # Current time GMT: Wed Jul 28 01:10:42 2021 # Using Test.pm version 1.31 '(species (common_name "fruitfly") (binomial "Drosophila melanogaster") (tax_id "7227")) ok 1 HASHING HASHED gene: symbol: HGNC tax_id: 9606 phenotype: Hemochromatosis phenotype: Porphyria variegata GO_term: iron homeostasis map: cytological: chromosome: 6 band: p21.3 ok 2 ok t/homol.t ............ 1..9 # Running under perl version 5.032001 for linux # Current time local: Tue Jul 27 13:10:42 2021 # Current time GMT: Wed Jul 28 01:10:42 2021 # Using Test.pm version 1.31 HGNC human Homo sapiens 9606 Hemochromatosis Porphyria variegata iron homeostasis 6 p21.3 Hfe MR2 house mouse Mus musculus 10090 integral membrane protein ok 1 ok 2 ok 3 ok 4 ok 5 HGNC human Homo sapiens 9606 Hemochromatosis Porphyria variegata iron homeostasis 6 p21.3 Hfe MR2 house mouse Mus musculus 10090 integral membrane protein ok 6 ok 7 ok 8 ok 9 names=gene_set gene symbol species common_name binomial tax_id phenotype phenotype GO_term map cytological chromosome band gene symbol synonym species common_name binomial tax_id GO_term =>gene_set gene_set=>gene gene=>symbol gene=>species species=>common_name species=>binomial species=>tax_id gene=>phenotype gene=>phenotype gene=>GO_term gene=>map map=>cytological cytological=>chromosome cytological=>band gene_set=>gene gene=>symbol gene=>synonym gene=>species species=>common_name species=>binomial species=>tax_id gene=>GO_term ok t/parsestr.t ......... 1..6 # Running under perl version 5.032001 for linux # Current time local: Tue Jul 27 13:10:42 2021 # Current time GMT: Wed Jul 28 01:10:42 2021 # Using Test.pm version 1.31 bar y ok 1 example of mixedcontent '(yo (paragraph (@ (id "1")) (. "example of") (bold "mixed") (. "content"))) ok 2 ok 3 ok 4 '(yo (paragraph (@ (id "1")) (. "example of") (bold "mixed") (. "content"))) TEXT '(yo (paragraph (@ (id "1")) (. "TEXT"))) ok 5 ok 6 ok t/qmatch.t ........... 1..9 # Running under perl version 5.032001 for linux # Current time local: Tue Jul 27 13:10:43 2021 # Current time GMT: Wed Jul 28 01:10:43 2021 # Using Test.pm version 1.31
methyl foo
big dave
auchtermuchty bar
shuggy ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 1 2 2 ok 7 ok 8 2 ok 9 1 2 ok t/roundtrip-attrs.t .. 1..5 # Running under perl version 5.032001 for linux # Current time local: Tue Jul 27 13:10:43 2021 # Current time GMT: Wed Jul 28 01:10:43 2021 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 '(address (a (@ (href "mailto:cjm@fruitfly.org")) (. "fred"))) ok 4 Stag - Structured Tag Library

Stag - Structured Tag Library

#000000 top images/celtic-stag.gif The Stag project currently consists of two perl modules, both of which are available from http://www.cpan.orgCPANor http://sourceforge.net/projects/stagsourceforge:

Data::Stag

This module is for manipulating data as recursively nested tag/value pairs ( Structured tags or Simple Tree aggreggates). At this time there is only a perl implementation, http://search.cpan.org/perldoc?Data::StagData::Stag, but C and Lisp implementations are planned.



Stags can easily be represented as XML or as lisp-style S-expressions, or using the Stag native indented text format. They can also be represented in perl using nested arrays.

DBIx::DBStag

This module is for conversion between relational representations and hierarchical (Stag) representations. SQL query results are automatically decomposed into the relations and a hierarchical structure is inferred. This modules also allows you to create SQL templates - a powerful way of reusing SQL statements joining multiple tables.

http://search.cpan.org/perldoc?DBIx::DBStagDBIx::DBStag
#FF8888 http://www.godatabase.org/cgi-bin/ubiq/ubiq.cgiUBIQ Query Interface A demo of DBStag for mapping query results to hierarchical tag-value data. This interface provides WWW access to a number of bioinformatics databases (Gene Ontology, Ensembl, Chado, BioSQL, GadFly). Templates can be selected, or you can feed in your own SQL.
#FF8888 http://sourceforge.net/projects/stagStag project page on Sourceforge Here you can find the Stag CVS repository, mail lists, etc
#FF8888 http://www.fruitfly.org/~cjm/rel-talk/dbistag.htmlDBStag Tutorial Brief tutorial on basic DBStag usage for biological databases. (slightly out of date - some aspects of DBStag may have changed)
#FF8888 http://search.cpan.org/perldoc?DBIx::DBStag::CookbookDBIx::DBStag::Cookbook DBStag cookbook - shows how to generate a normalised relational db from an XML source (the CIA world factbook), create your own SQL templates and build a WWW query interface
#FF8888 http://search.cpan.org/perldoc?DBIx::DBStag::SQLTemplateDBIx::DBStag::SQLTemplate The POD manpage describing SQL templates - a powerful way of reusing complex SQL statements
#FF8888 stag-poster.htmlStag Poster DBStag poster from Genome Informatics 2003 at Cold Spring Harbor Laboratory (large image)
http://sourceforge.net SourceForge.net Logo 0 http://sourceforge.net/sflogo.php?group_id=68482&type=1 88 31
mailto:cjm@fruitfly.orgfred
Last modified: Mon Apr 12 11:33:36 PDT 2004 mailto:cjm@fruitfly.org ok 5 ok t/set-attrs.t ........ 1..3 # Running under perl version 5.032001 for linux # Current time local: Tue Jul 27 13:10:43 2021 # Current time GMT: Wed Jul 28 01:10:43 2021 # Using Test.pm version 1.31 '(person (name "jim") (phone_no "555-1111") (phone_no "555-2222")) '(person (name "jim") (phone_no "555-1111") (phone_no "555-2222") (phone_no "555-3333") (phone_no "555-4444")) '(dataset (person (name "jim") (phone_no "555-1111") (phone_no "555-2222") (phone_no "555-3333") (phone_no "555-4444")) (person (name "fred") (phone_no "555-5555"))) '(dataset (person (name "jim") (phone_no "555-1111") (phone_no "555-2222") (phone_no "555-3333") (phone_no "555-4444")) (person (name "fred") (phone_no "555-5555")) (person (name "fred") (phone_no "555-5555"))) jim 555-1111 555-2222 555-3333 555-4444 jim 555-1111 555-2222 555-3333 555-4444 ok 1 ok 2 ok 3 ok t/set.t .............. 1..2 # Running under perl version 5.032001 for linux # Current time local: Tue Jul 27 13:10:43 2021 # Current time GMT: Wed Jul 28 01:10:43 2021 # Using Test.pm version 1.31 Sherlock Holmes detective James Bond secret agent Sherlock Holmes detective
Great Britain 221B Baker Street London
James Bond secret agent ok 1 Sherlock Holmes detective
Great Britain 221B Baker Street London
James Bond secret agent ok 2 ok t/sxpr.t ............. 1..2 # Running under perl version 5.032001 for linux # Current time local: Tue Jul 27 13:10:43 2021 # Current time GMT: Wed Jul 28 01:10:43 2021 # Using Test.pm version 1.31 ok 1 ok 2 ok t/unhash.t ........... 1..4 # Running under perl version 5.032001 for linux # Current time local: Tue Jul 27 13:10:43 2021 # Current time GMT: Wed Jul 28 01:10:43 2021 # Using Test.pm version 1.31 30
10578 Katonah Hickory Street NY
James Sarah
11291 Garden City The Manse 19 Chestnut Ln NY
Hill James 34 30
Katonah 10578 Hickory Street NY
James Sarah James
The Manse 19 Chestnut Ln NY 11291 Garden City
Hill 34 The Manse 19 Chestnut Ln ok 1 blue blonde Fred Jill John Gerald Fred blonde blue Jill John Gerald Jill John Gerald ok 2 ok 3 ok 4 ok t/unset.t ............ 1..4 # Running under perl version 5.032001 for linux # Current time local: Tue Jul 27 13:10:43 2021 # Current time GMT: Wed Jul 28 01:10:43 2021 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok t/write.t ............ 1..1 # Running under perl version 5.032001 for linux # Current time local: Tue Jul 27 13:10:44 2021 # Current time GMT: Wed Jul 28 01:10:44 2021 # Using Test.pm version 1.31 about to write to t/data/test.sxpr written!! '(db (species_set (species (common_name "house mouse") (binomial "Mus musculus") (tax_id "10090")) (species (common_name "fruitfly") (binomial "Drosophila melanogaster") (tax_id "7227")) (species (common_name "human") (binomial "Homo sapiens") (tax_id "9606"))) (gene_set (gene (symbol "HGNC") (tax_id "9606") (phenotype "Hemochromatosis") (phenotype "Porphyria variegata") (GO_term "iron homeostasis") (map (cytological (chromosome "6") (band "p21.3")))) (gene (symbol "Hfe") (synonym "MR2") (tax_id "10090") (GO_term "integral membrane protein"))) (similarity_set (pair (symbol "HGNC") (symbol "Hfe")) (pair (symbol "WNT3A") (symbol "Wnt3a")))) ok 1 ok t/xml1.t ............. 1..7 # Running under perl version 5.032001 for linux # Current time local: Tue Jul 27 13:10:44 2021 # Current time GMT: Wed Jul 28 01:10:44 2021 # Using Test.pm version 1.31 shuggybus driver55 tamforklift driverchips ok 1 $VAR1 = { 'personset' => { 'person' => [ { 'age' => '55', 'job' => 'bus driver', 'name' => 'shuggy' }, { 'job' => 'forklift driver', 'name' => 'tam', 'favourite_food' => 'chips' } ] } }; shuggy bus driver 55 tam forklift driver chips shuggy bus driver 100 tam forklift driver chips checking.. shuggy bus driver 100 ok 2 ok 3 tam forklift driver chips ok 4 ok 5 ok 6 yyy tam forklift driver chips ok 7 ok t/xml2.t ............. 1..4 # Running under perl version 5.032001 for linux # Current time local: Tue Jul 27 13:10:44 2021 # Current time GMT: Wed Jul 28 01:10:44 2021 # Using Test.pm version 1.31 $VAR1 = bless( [ 'person', [ bless( [ 'name', 'davey' ], 'Data::Stag::StagImpl' ), bless( [ 'address', 'here' ], 'Data::Stag::StagImpl' ), bless( [ 'description', [ bless( [ 'hair', 'green' ], 'Data::Stag::StagImpl' ), bless( [ 'eyes', 'two' ], 'Data::Stag::StagImpl' ), bless( [ 'teeth', 5 ], 'Data::Stag::StagImpl' ) ] ], 'Data::Stag::StagImpl' ), bless( [ 'pets', [ bless( [ 'petname', 'igor' ], 'Data::Stag::StagImpl' ), bless( [ 'petname', 'ginger' ], 'Data::Stag::StagImpl' ) ] ], 'Data::Stag::StagImpl' ) ] ], 'Data::Stag::StagImpl' ); $VAR1 = bless( [ 'person', [ bless( [ 'name', 'shuggy' ], 'Data::Stag::StagImpl' ), bless( [ 'address', 'there' ], 'Data::Stag::StagImpl' ), bless( [ 'description', [ bless( [ 'hair', 'red' ], 'Data::Stag::StagImpl' ), bless( [ 'eyes', 'three' ], 'Data::Stag::StagImpl' ), bless( [ 'teeth', 1 ], 'Data::Stag::StagImpl' ) ] ], 'Data::Stag::StagImpl' ), bless( [ 'pets', [ bless( [ 'petname', 'thud' ], 'Data::Stag::StagImpl' ), bless( [ 'petname', 'spud' ], 'Data::Stag::StagImpl' ) ] ], 'Data::Stag::StagImpl' ) ] ], 'Data::Stag::StagImpl' ); shuggy
there
red three 1 thud spud desc green two 5 red three 1 ok 1 shuggy
there
red three 1 thud spud finding green haired people.. davey
here
green two 5 igor ginger ok 2 shuggy
there
red three 1 thud spud ok 3 '(a "") '(foo (bar "1")) ok 4 ok All tests successful. Files=20, Tests=102, 3 wallclock secs ( 0.25 usr 0.04 sys + 2.71 cusr 0.29 csys = 3.29 CPU) Result: PASS make[1]: Leaving directory '/build/libdata-stag-perl-0.14' fakeroot debian/rules binary dh binary dh: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_testroot dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/libdata-stag-perl-0.14' dh_auto_install dh_auto_install: warning: Compatibility levels before 10 are deprecated (level 9 in use) make -j1 install DESTDIR=/build/libdata-stag-perl-0.14/debian/libdata-stag-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[2]: Entering directory '/build/libdata-stag-perl-0.14' Manifying 20 pod documents Manifying 27 pod documents Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/PodParser.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/HashDB.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/JSONWriter.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/PerlWriter.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/StagDB.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/SxprParser.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/Util.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/Arr2HTML.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/null.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/Simple.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/DTDWriter.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/BaseGenerator.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/IndentWriter.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/Writer.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/XMLParser.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/GraphHandler.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/ChainHandler.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/ITextWriter.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/StagImpl.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/BaseHandler.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/SxprWriter.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/IndentParser.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/SAX2Stag.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/Base.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/ITextParser.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/StagI.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/XMLWriter.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/XSLTHandler.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/XSLHandler.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-xml2itext.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-view.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-splitter.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-query.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-parse.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-mogrify.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-merge.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-join.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-itext2xml.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-itext2sxpr.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-itext2simple.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-handle.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-grep.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-flatten.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-findsubtree.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-filter.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-drawtree.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-diff.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-db.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-autoschema.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::null.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::XSLTHandler.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::XSLHandler.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::XMLWriter.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::XMLParser.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::Writer.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::SxprWriter.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::SxprParser.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::StagImpl.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::StagDB.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::Simple.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::SAX2Stag.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::PodParser.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::PerlWriter.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::JSONWriter.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::IndentWriter.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::IndentParser.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::ITextWriter.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::ITextParser.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::HashDB.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::GraphHandler.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::DTDWriter.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::ChainHandler.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::BaseHandler.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::BaseGenerator.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::Arr2HTML.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-xml2itext.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-view.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-splitter.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-query.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-parse.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-mogrify.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-merge.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-join.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-itext2xml.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-itext2sxpr.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-itext2simple.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-handle.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-grep.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-flatten.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-findsubtree.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-filter.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-drawtree.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-diff.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-db.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-autoschema.pl make[2]: Leaving directory '/build/libdata-stag-perl-0.14' file-rename 's/\.pl//' /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/* file-rename 's/\.pl//' /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/*1p* make[1]: Leaving directory '/build/libdata-stag-perl-0.14' dh_installdocs dh_installdocs: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_installchangelogs dh_installchangelogs: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_installman dh_installman: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_perl dh_link dh_strip_nondeterminism dh_compress dh_compress: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_fixperms dh_missing dh_missing: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_installdeb dh_installdeb: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libdata-stag-perl' in '../libdata-stag-perl_0.14-2_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libdata-stag-perl_0.14-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/11075 and its subdirectories I: Current time: Tue Jul 27 13:10:53 -12 2021 I: pbuilder-time-stamp: 1627434653 Wed Jul 28 01:10:55 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink11-arm64.debian.net. Wed Jul 28 01:10:55 UTC 2021 I: Preparing to do remote build '2' on codethink11-arm64.debian.net. Wed Jul 28 01:12:27 UTC 2021 I: Deleting $TMPDIR on codethink11-arm64.debian.net. Wed Jul 28 01:12:27 UTC 2021 I: libdata-stag-perl_0.14-2_arm64.changes: Format: 1.8 Date: Mon, 30 May 2016 00:08:11 +0200 Source: libdata-stag-perl Binary: libdata-stag-perl Architecture: all Version: 0.14-2 Distribution: unstable Urgency: medium Maintainer: Debian Perl Group Changed-By: gregor herrmann Description: libdata-stag-perl - module to manipulate Structured Tags datastructures Closes: 825434 Changes: libdata-stag-perl (0.14-2) unstable; urgency=medium . * Team upload. . [ gregor herrmann ] * Rename autopkgtest configuration file(s) as per new pkg-perl- autopkgtest schema. . [ Salvatore Bonaccorso ] * debian/control: Use HTTPS transport protocol for Vcs-Git URI . [ gregor herrmann ] * debian/copyright: change Copyright-Format 1.0 URL to HTTPS. * Use (file-)rename instead of (p)rename. (Closes: #825434) * Update years of packaging copyright. * Add a patch to fix more spelling mistakes. * Enable autopkgtest's use.t. * Bump debhelper compatibility level to 9. * Declare compliance with Debian Policy 3.9.8. Checksums-Sha1: 952ab636b73f536cb444b97c055ca7563301f334 448276 libdata-stag-perl_0.14-2_all.deb 2919c8e1337f98ed44850f6507aa0955e69fd3fb 5493 libdata-stag-perl_0.14-2_arm64.buildinfo Checksums-Sha256: bd62a6875af6ba2fe81af428d1175880f8de95170f1d93af404bf448ac206162 448276 libdata-stag-perl_0.14-2_all.deb 50cb587c6015669d007f178ddbb78c246eda87c237b5655a92be2cd0e22b969c 5493 libdata-stag-perl_0.14-2_arm64.buildinfo Files: 5c67eaca8009211b5215d21505a2bc32 448276 perl optional libdata-stag-perl_0.14-2_all.deb 9265f4859342fc65d2bf254992d5e032 5493 perl optional libdata-stag-perl_0.14-2_arm64.buildinfo Wed Jul 28 01:12:29 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.YLYMjPHaCW/libdata-stag-perl_0.14-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.YLYMjPHaCW/libdata-stag-perl_0.14-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.YLYMjPHaCW/libdata-stag-perl_0.14-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.YLYMjPHaCW/b1/libdata-stag-perl_0.14-2_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.YLYMjPHaCW/b2/libdata-stag-perl_0.14-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.554s) 0.554s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.024s) 0.024s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Wed Jul 28 01:12:31 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Wed Jul 28 01:12:31 UTC 2021 I: libdata-stag-perl from bullseye built successfully and reproducibly on arm64. Wed Jul 28 01:12:32 UTC 2021 I: Submitting .buildinfo files to external archives: Wed Jul 28 01:12:32 UTC 2021 I: Submitting 8.0K b1/libdata-stag-perl_0.14-2_arm64.buildinfo.asc Wed Jul 28 01:12:34 UTC 2021 I: Submitting 8.0K b2/libdata-stag-perl_0.14-2_arm64.buildinfo.asc Wed Jul 28 01:12:36 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Jul 28 01:12:36 UTC 2021 I: Done submitting .buildinfo files. Wed Jul 28 01:12:36 UTC 2021 I: Removing signed libdata-stag-perl_0.14-2_arm64.buildinfo.asc files: removed './b1/libdata-stag-perl_0.14-2_arm64.buildinfo.asc' removed './b2/libdata-stag-perl_0.14-2_arm64.buildinfo.asc'