Sun Aug 15 11:55:11 UTC 2021 I: starting to build libbiod/bullseye/arm64 on jenkins on '2021-08-15 11:54' Sun Aug 15 11:55:11 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_31/24570/console.log Sun Aug 15 11:55:11 UTC 2021 I: Downloading source for bullseye/libbiod=0.2.3+git20191120.b8eecef-2 --2021-08-15 11:55:12-- http://cdn-fastly.deb.debian.org/debian/pool/main/libb/libbiod/libbiod_0.2.3+git20191120.b8eecef-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2173 (2.1K) Saving to: ‘libbiod_0.2.3+git20191120.b8eecef-2.dsc’ 0K .. 100% 161M=0s 2021-08-15 11:55:12 (161 MB/s) - ‘libbiod_0.2.3+git20191120.b8eecef-2.dsc’ saved [2173/2173] Sun Aug 15 11:55:12 UTC 2021 I: libbiod_0.2.3+git20191120.b8eecef-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbiod Binary: libbiod0, libbiod-dev Architecture: any Version: 0.2.3+git20191120.b8eecef-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/biod/BioD Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/libbiod Vcs-Git: https://salsa.debian.org/med-team/libbiod.git Build-Depends: debhelper-compat (= 12), dh-dlang, meson (>= 0.48), pkg-config, zlib1g-dev Package-List: libbiod-dev deb libdevel optional arch=any libbiod0 deb libs optional arch=amd64,arm64 Checksums-Sha1: 2b347e5b5244f0061ef633d78cc7513e69f80412 1841188 libbiod_0.2.3+git20191120.b8eecef.orig.tar.xz 3907ab0d0407a86da20c268499977a9b7b4207c0 5544 libbiod_0.2.3+git20191120.b8eecef-2.debian.tar.xz Checksums-Sha256: 89690d52a09d428fd53c9cbbf20b06898148d0f265db73e8acf1ca8e982802fb 1841188 libbiod_0.2.3+git20191120.b8eecef.orig.tar.xz 52f2375e62727ccf624f961bc0f9859ad2666bb99349b8c24fd5367c33d939ef 5544 libbiod_0.2.3+git20191120.b8eecef-2.debian.tar.xz Files: 83fdf0e87764bad21854d48834e61b7c 1841188 libbiod_0.2.3+git20191120.b8eecef.orig.tar.xz bbf5e72de6fde6e56930059b60df0dab 5544 libbiod_0.2.3+git20191120.b8eecef-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCgAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl4eMT8OHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtGcBQ/9ECkFqtcmhyl+umCA/iqDZ14c6z3BryweI4tl 6ckiP3OTDOXGkyWQVcTofLN2yQXyQlxi0IPn5CN4OpDzEmFqMB2q6rAZeWdnho1U TS3BdsNH3rLkAPPukFhw5j7sQWHiaeWOL7a+SKBIeMqH/xScLlyBKBrSE3gWnh/c x4HXlvf4+xX0xcZPYRz1ekccy7nJK2TfAducj/dILC/Aq7aaKs/tRZ+IUPEOvi7V BJlllbH+Jyc8bvZlQXB7mrVi5A7HCjkGeCYHZ9qLHNWC9HiFN5VjQHDezwZvD1S9 eoFwVaw29WKWPGTf5Yf3d/9nM0/eHmOCt97nsUQB6cucx6UQ4cwNa+oZ0JcYwWZF uhIBGBxyqFMstJNyVrqMJLNnt5bcb10KFhAphgxkHzW85n1MkqsLJDklyZfGgucR TDdxbji7Iy1xRepltzAbe6guNEBFftU8WJdgc2bDciq5FiNLLB6OGFTb1XGPAYVY cV0zOVvFtz3EriqQUSzD9POaaf/ODjvUz2BW9KyOQwWSh9+yRYUlPRYMyKrXLdrO qc4qsIfphWoyr0AQX9/5IORpTBqTqoQwkdN66jrcOKoIitneGY7l2S56nO5p0TZg iCzCl3z+GW8PHHq/nJ6LE4/dFnMUDeGtf9t984is7VplgZ07CeRRpi3JRpYqYUUC nuTEniA= =Z+kQ -----END PGP SIGNATURE----- Sun Aug 15 11:55:12 UTC 2021 I: Checking whether the package is not for us Sun Aug 15 11:55:12 UTC 2021 I: Starting 1st build on remote node codethink16-arm64.debian.net. Sun Aug 15 11:55:12 UTC 2021 I: Preparing to do remote build '1' on codethink16-arm64.debian.net. Sun Aug 15 12:00:09 UTC 2021 I: Deleting $TMPDIR on codethink16-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Aug 14 23:55:14 -12 2021 I: pbuilder-time-stamp: 1629028514 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbiod_0.2.3+git20191120.b8eecef-2.dsc] I: copying [./libbiod_0.2.3+git20191120.b8eecef.orig.tar.xz] I: copying [./libbiod_0.2.3+git20191120.b8eecef-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.goYqPcga/trustedkeys.kbx': General error gpgv: Signature made Tue Jan 14 09:23:11 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libbiod_0.2.3+git20191120.b8eecef-2.dsc dpkg-source: info: extracting libbiod in libbiod-0.2.3+git20191120.b8eecef dpkg-source: info: unpacking libbiod_0.2.3+git20191120.b8eecef.orig.tar.xz dpkg-source: info: unpacking libbiod_0.2.3+git20191120.b8eecef-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_fix_clean_target.patch dpkg-source: info: applying 02_respect-env-dflags.patch dpkg-source: info: applying 03_add-meson-build.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/23652/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='23652' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.mQg1DmYECw/pbuilderrc_9Id2 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.mQg1DmYECw/b1 --logfile b1/build.log libbiod_0.2.3+git20191120.b8eecef-2.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink16-arm64 4.15.0-153-generic #160-Ubuntu SMP Thu Jul 29 07:06:07 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Aug 4 08:25 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Jul 28 07:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Jul 28 07:09 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Jul 28 07:09 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Jul 28 07:09 more -rwsr-xr-x 1 root root 51360 Jul 28 07:09 mount -rwxr-xr-x 1 root root 14496 Jul 28 07:09 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 13 21:24 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Jul 28 07:09 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 21:55 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30880 Jul 28 07:09 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Jul 28 07:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/23652/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dh-dlang, meson (>= 0.48), pkg-config, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-dlang; however: Package dh-dlang is not installed. pbuilder-satisfydepends-dummy depends on meson (>= 0.48); however: Package meson is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} default-d-compiler{a} dh-autoreconf{a} dh-dlang{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} ldc{a} libarchive-zip-perl{a} libbsd0{a} libdebhelper-perl{a} libedit2{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu67{a} libllvm11{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmpdec3{a} libphobos2-ldc-shared-dev{a} libphobos2-ldc-shared94{a} libpipeline1{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} libz3-4{a} m4{a} man-db{a} media-types{a} meson{a} ninja-build{a} pkg-config{a} po-debconf{a} python3{a} python3-minimal{a} python3-pkg-resources{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 59 newly installed, 0 to remove and 0 not upgraded. Need to get 57.5 MB of archives. After unpacking 278 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-8 [142 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-minimal arm64 3.9.2-1 [797 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 python3.9-minimal arm64 3.9.2-1 [1884 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 python3-minimal arm64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 libmpdec3 arm64 2.5.1-1 [84.4 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 libreadline8 arm64 8.1-1 [160 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-stdlib arm64 3.9.2-1 [1658 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 python3.9 arm64 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 libpython3-stdlib arm64 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 python3 arm64 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 libmd0 arm64 1.0.3-3 [27.9 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 libbsd0 arm64 0.11.3-1 [106 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 libedit2 arm64 3.1-20191231-2+b1 [92.1 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 libz3-4 arm64 4.8.10-1 [6117 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 libllvm11 arm64 1:11.0.1-2 [14.7 MB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 libphobos2-ldc-shared94 arm64 1:1.24.0-2 [1144 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 libphobos2-ldc-shared-dev arm64 1:1.24.0-2 [6130 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 ldc arm64 1:1.24.0-2 [3626 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 default-d-compiler arm64 0.6.5 [3020 B] Get: 53 http://deb.debian.org/debian bullseye/main arm64 dh-dlang all 0.6.5 [5020 B] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libglib2.0-0 arm64 2.66.8-1 [1286 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 ninja-build arm64 1.10.1-1 [107 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 meson all 0.56.2-1 [437 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 pkg-config arm64 0.29.2-1 [63.6 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] Fetched 57.5 MB in 2s (28.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8_arm64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../1-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_arm64.deb ... 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Setting up libtool (2.4.6-15) ... Setting up libedit2:arm64 (3.1-20191231-2+b1) ... Setting up libreadline8:arm64 (8.1-1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libllvm11:arm64 (1:11.0.1-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libphobos2-ldc-shared94:arm64 (1:1.24.0-2) ... Setting up libpython3.9-stdlib:arm64 (3.9.2-1) ... Setting up libpython3-stdlib:arm64 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libphobos2-ldc-shared-dev (1:1.24.0-2) ... Setting up python3.9 (3.9.2-1) ... Setting up ldc (1:1.24.0-2) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up default-d-compiler (0.6.5) ... Setting up meson (0.56.2-1) ... Setting up dh-dlang (0.6.5) ... Processing triggers for libc-bin (2.31-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/libbiod-0.2.3+git20191120.b8eecef/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbiod_0.2.3+git20191120.b8eecef-2_source.changes dpkg-buildpackage: info: source package libbiod dpkg-buildpackage: info: source version 0.2.3+git20191120.b8eecef-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --buildsystem=meson dh_auto_clean -O--buildsystem=meson dh_autoreconf_clean -O--buildsystem=meson dh_clean -O--buildsystem=meson debian/rules build dh build --buildsystem=meson dh_update_autotools_config -O--buildsystem=meson dh_autoreconf -O--buildsystem=meson debian/rules override_dh_auto_configure make[1]: Entering directory '/build/libbiod-0.2.3+git20191120.b8eecef' dh_auto_configure -- -Doptimize_strong=true cd obj-aarch64-linux-gnu && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/aarch64-linux-gnu -Doptimize_strong=true The Meson build system Version: 0.56.2 Source dir: /build/libbiod-0.2.3+git20191120.b8eecef Build dir: /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu Build type: native build Project name: BioD Project version: 0.2.3 Using 'CFLAGS' from environment with value: '-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong -Wformat -Werror=format-security' Using 'LDFLAGS' from environment with value: '-Wl,-z,relro' Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2' Using 'DC' from environment with value: 'ldc2' Using 'DFLAGS' from environment with value: '-O -g -release -wi' Using 'LDFLAGS' from environment with value: '-Wl,-z,relro' D compiler for the host machine: ldc2 (llvm 1.24.0 "LDC - the LLVM D compiler (1.24.0):") D linker for the host machine: ldc2 ld.gold 2.35.2 Using 'CFLAGS' from environment with value: '-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong -Wformat -Werror=format-security' Using 'LDFLAGS' from environment with value: '-Wl,-z,relro' Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2' Using 'DC' from environment with value: 'ldc2' Using 'DFLAGS' from environment with value: '-O -g -release -wi' Using 'LDFLAGS' from environment with value: '-Wl,-z,relro' Host machine cpu family: aarch64 Host machine cpu: aarch64 Found pkg-config: /usr/bin/pkg-config (0.29.2) Run-time dependency zlib found: YES 1.2.11 Build targets in project: 3 Option buildtype is: plain [default: debugoptimized] Found ninja-1.10.1 at /usr/bin/ninja make[1]: Leaving directory '/build/libbiod-0.2.3+git20191120.b8eecef' dh_auto_build -O--buildsystem=meson cd obj-aarch64-linux-gnu && LC_ALL=C.UTF-8 ninja -j8 -v [1/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/contrib_undead_doformat.d.o -c ../contrib/undead/doformat.d [2/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/contrib_undead_utf.d.o -c ../contrib/undead/utf.d [3/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_bgzf_chunk.d.o -c ../bio/core/bgzf/chunk.d [4/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_base.d.o -c ../bio/core/base.d [5/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_bgzf_constants.d.o -c ../bio/core/bgzf/constants.d [6/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_bgzf_compress.d.o -c ../bio/core/bgzf/compress.d [7/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/contrib_undead_cstream.d.o -c ../contrib/undead/cstream.d [8/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_bgzf_block.d.o -c ../bio/core/bgzf/block.d [9/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_call.d.o -c ../bio/core/call.d [10/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_genotype.d.o -c ../bio/core/genotype.d [11/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_decompress.d.o -c ../bio/core/decompress.d [12/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_kmer.d.o -c ../bio/core/kmer.d [13/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_region.d.o -c ../bio/core/region.d [14/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/contrib_undead_internal_file.d.o -c ../contrib/undead/internal/file.d [15/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_tinymap.d.o -c ../bio/core/tinymap.d [16/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_algo.d.o -c ../bio/core/utils/algo.d [17/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_exception.d.o -c ../bio/core/utils/exception.d [18/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_bgzf_outputstream.d.o -c ../bio/core/bgzf/outputstream.d [19/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_memoize.d.o -c ../bio/core/utils/memoize.d [20/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_bgzf_virtualoffset.d.o -c ../bio/core/bgzf/virtualoffset.d [21/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_sequence.d.o -c ../bio/core/sequence.d [22/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_outbuffer.d.o -c ../bio/core/utils/outbuffer.d [23/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_roundbuf.d.o -c ../bio/core/utils/roundbuf.d [24/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_format.d.o -c ../bio/core/utils/format.d [25/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_range.d.o -c ../bio/core/utils/range.d [26/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_switchendianness.d.o -c ../bio/core/utils/switchendianness.d [27/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_zlib.d.o -c ../bio/core/utils/zlib.d [28/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_bylinefast.d.o -c ../bio/core/utils/bylinefast.d [29/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_stream.d.o -c ../bio/core/utils/stream.d [30/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_header.d.o -c ../bio/std/experimental/hts/bam/header.d [31/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_constants.d.o -c ../bio/std/experimental/hts/constants.d [32/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_hashing.d.o -c ../bio/std/experimental/hts/hashing.d [33/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_tmpfile.d.o -c ../bio/core/utils/tmpfile.d [34/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_logger.d.o -c ../bio/std/experimental/hts/logger.d [35/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_bgzf_inputstream.d.o -c ../bio/core/bgzf/inputstream.d [36/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_reads.d.o -c ../bio/std/experimental/hts/reads.d [37/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_writer.d.o -c ../bio/std/experimental/hts/bam/writer.d [38/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_pileup.d.o -c ../bio/std/experimental/hts/pileup.d [39/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_unpack.d.o -c ../bio/std/experimental/hts/unpack.d [40/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_file_fastq.d.o -c ../bio/std/file/fastq.d [41/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_bgzf_writer.d.o -c ../bio/std/experimental/hts/bgzf_writer.d [42/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_genotype_maf.d.o -c ../bio/std/genotype/maf.d [43/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_bai_bin.d.o -c ../bio/std/hts/bam/bai/bin.d [44/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_abstractreader.d.o -c ../bio/std/hts/bam/abstractreader.d [45/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/contrib_undead_stream.d.o -c ../contrib/undead/stream.d [46/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_baifile.d.o -c ../bio/std/hts/bam/baifile.d [47/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_baseinfo.d.o -c ../bio/std/hts/bam/baseinfo.d [48/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_constants.d.o -c ../bio/std/hts/bam/constants.d [49/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_cigar.d.o -c ../bio/std/hts/bam/cigar.d [50/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_md_core.d.o -c ../bio/std/hts/bam/md/core.d [51/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_reader.d.o -c ../bio/std/experimental/hts/bam/reader.d ../bio/std/experimental/hts/bam/reader.d(237): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(245): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(246): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(250): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(254): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(258): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(267): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(268): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(269): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(273): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(296): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(297): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(301): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(306): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(307): Deprecation: function std.typecons.Nullable!int.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(314): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(316): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(335): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(337): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(339): Deprecation: function std.typecons.Nullable!uint.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(355): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(356): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(371): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(373): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(392): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(412): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(491): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. [52/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_md_parse.d.o -c ../bio/std/hts/bam/md/parse.d ../bio/std/hts/bam/md/parse.d(49): Deprecation: returning this._cached_front escapes a reference to parameter this ../bio/std/hts/bam/md/parse.d(49): perhaps annotate the parameter with return ../bio/std/hts/bam/md/parse.d(53): Deprecation: returning this._cached_back escapes a reference to parameter this ../bio/std/hts/bam/md/parse.d(53): perhaps annotate the parameter with return [53/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_bgzf.d.o -c ../bio/std/experimental/hts/bgzf.d ../bio/std/experimental/hts/bgzf.d(202): Deprecation: function std.typecons.Nullable!ulong.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bgzf.d(212): Deprecation: function std.typecons.Nullable!ulong.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bgzf.d(418): Deprecation: function std.typecons.Nullable!int.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bgzf.d(425): Deprecation: function std.typecons.Nullable!int.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. [54/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_md_reconstruct.d.o -c ../bio/std/hts/bam/md/reconstruct.d [55/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_pileup.d.o -c ../bio/std/hts/bam/pileup.d [56/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_file_fasta.d.o -c ../bio/std/file/fasta.d [57/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_bai_indexing.d.o -c ../bio/std/hts/bam/bai/indexing.d [58/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_md_operation.d.o -c ../bio/std/hts/bam/md/operation.d ../bio/std/hts/bam/md/operation.d(57): Deprecation: returning this._match escapes a reference to parameter this ../bio/std/hts/bam/md/operation.d(57): perhaps annotate the parameter with return ../bio/std/hts/bam/md/operation.d(72): Deprecation: returning this._deletion escapes a reference to parameter this ../bio/std/hts/bam/md/operation.d(72): perhaps annotate the parameter with return [59/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_genotype_snp.d.o -c ../bio/std/genotype/snp.d [60/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_file_fai.d.o -c ../bio/std/file/fai.d [61/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_readrange.d.o -c ../bio/std/hts/bam/readrange.d [62/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_referenceinfo.d.o -c ../bio/std/hts/bam/referenceinfo.d [63/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_region.d.o -c ../bio/std/hts/bam/region.d [64/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_reference.d.o -c ../bio/std/hts/bam/reference.d [65/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_splitter.d.o -c ../bio/std/hts/bam/splitter.d [66/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_validation_samheader.d.o -c ../bio/std/hts/bam/validation/samheader.d [67/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_randomaccessmanager.d.o -c ../bio/std/hts/bam/randomaccessmanager.d [68/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_writer.d.o -c ../bio/std/hts/bam/writer.d [69/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_iontorrent_flowindex.d.o -c ../bio/std/hts/iontorrent/flowindex.d [70/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_reader.d.o -c ../bio/std/hts/bam/reader.d [71/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_read.d.o -c ../bio/std/hts/bam/read.d [72/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_iontorrent_flowcall.d.o -c ../bio/std/hts/iontorrent/flowcall.d [73/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_validation_alignment.d.o -c ../bio/std/hts/bam/validation/alignment.d [74/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_sam_utils_recordparser.d.o -c ../bio/std/hts/sam/utils/recordparser.d sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(52): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(60): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable sam_alignment.rl(69): Warning: statement is not reachable sam_alignment.rl(76): Warning: statement is not reachable sam_alignment.rl(77): Warning: statement is not reachable sam_alignment.rl(82): Warning: statement is not reachable sam_alignment.rl(83): Warning: statement is not reachable sam_alignment.rl(131): Warning: statement is not reachable sam_alignment.rl(132): Warning: statement is not reachable sam_alignment.rl(163): Warning: statement is not reachable sam_alignment.rl(164): Warning: statement is not reachable sam_alignment.rl(176): Warning: statement is not reachable sam_alignment.rl(177): Warning: statement is not reachable sam_alignment.rl(188): Warning: statement is not reachable sam_alignment.rl(189): Warning: statement is not reachable sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(222): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(252): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable sam_alignment.rl(409): Warning: statement is not reachable sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable sam_alignment.rl(76): Warning: statement is not reachable sam_alignment.rl(82): Warning: statement is not reachable sam_alignment.rl(131): Warning: statement is not reachable sam_alignment.rl(163): Warning: statement is not reachable sam_alignment.rl(176): Warning: statement is not reachable sam_alignment.rl(188): Warning: statement is not reachable sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable [75/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_tagvalue.d.o -c ../bio/std/hts/bam/tagvalue.d [76/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_multireader.d.o -c ../bio/std/hts/bam/multireader.d [77/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_utils_array.d.o -c ../bio/std/hts/utils/array.d [78/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_utils_graph.d.o -c ../bio/std/hts/utils/graph.d [79/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_snpcallers_simple.d.o -c ../bio/std/hts/snpcallers/simple.d [80/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_snpcallers_maq.d.o -c ../bio/std/hts/snpcallers/maq.d ../bio/core/tinymap.d(61): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(76): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(101): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. [81/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_pileup.d.o -c ../bio/std/hts/bam/pileup.d [82/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_maf_block.d.o -c ../bio/std/maf/block.d [83/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_thirdparty_msgpack.d.o -c ../bio/std/hts/thirdparty/msgpack.d ../bio/std/hts/thirdparty/msgpack.d(1116): Deprecation: returning this.vecList_ escapes a reference to parameter this ../bio/std/hts/thirdparty/msgpack.d(1116): perhaps annotate the parameter with return [84/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_utils_value.d.o -c ../bio/std/hts/utils/value.d [85/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_sff_constants.d.o -c ../bio/std/sff/constants.d [86/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_sff_index.d.o -c ../bio/std/sff/index.d [87/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_range_splitter.d.o -c ../bio/std/range/splitter.d [88/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_sff_read.d.o -c ../bio/std/sff/read.d [89/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_maf_reader.d.o -c ../bio/std/maf/reader.d [90/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_sff_reader.d.o -c ../bio/std/sff/reader.d [91/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_sff_utils_roundup.d.o -c ../bio/std/sff/utils/roundup.d [92/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_sam_reader.d.o -c ../bio/std/hts/sam/reader.d [93/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_sam_utils_fastrecordparser.d.o -c ../bio/std/hts/sam/utils/fastrecordparser.d sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable sam_alignment.rl(76): Warning: statement is not reachable sam_alignment.rl(82): Warning: statement is not reachable sam_alignment.rl(131): Warning: statement is not reachable sam_alignment.rl(163): Warning: statement is not reachable sam_alignment.rl(176): Warning: statement is not reachable sam_alignment.rl(188): Warning: statement is not reachable sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable sam_alignment.rl(52): Warning: statement is not reachable sam_alignment.rl(60): Warning: statement is not reachable sam_alignment.rl(69): Warning: statement is not reachable sam_alignment.rl(77): Warning: statement is not reachable sam_alignment.rl(83): Warning: statement is not reachable sam_alignment.rl(132): Warning: statement is not reachable sam_alignment.rl(164): Warning: statement is not reachable sam_alignment.rl(177): Warning: statement is not reachable sam_alignment.rl(189): Warning: statement is not reachable sam_alignment.rl(222): Warning: statement is not reachable sam_alignment.rl(252): Warning: statement is not reachable sam_alignment.rl(409): Warning: statement is not reachable sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable sam_alignment.rl(76): Warning: statement is not reachable sam_alignment.rl(82): Warning: statement is not reachable sam_alignment.rl(131): Warning: statement is not reachable sam_alignment.rl(163): Warning: statement is not reachable sam_alignment.rl(176): Warning: statement is not reachable sam_alignment.rl(188): Warning: statement is not reachable sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable [94/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_maf_parser.d.o -c ../bio/std/maf/parser.d [95/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/contrib_undead_utf.d.o -c ../contrib/undead/utf.d [96/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_sff_readrange.d.o -c ../bio/std/sff/readrange.d [97/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_bgzf_constants.d.o -c ../bio/core/bgzf/constants.d [98/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_sam_header.d.o -c ../bio/std/hts/sam/header.d [99/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_base.d.o -c ../bio/core/base.d [100/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_bgzf_compress.d.o -c ../bio/core/bgzf/compress.d [101/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_sff_writer.d.o -c ../bio/std/sff/writer.d [102/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_bgzf_chunk.d.o -c ../bio/core/bgzf/chunk.d [103/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_bgzf_block.d.o -c ../bio/core/bgzf/block.d [104/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/contrib_undead_cstream.d.o -c ../contrib/undead/cstream.d ../contrib/undead/cstream.d(206): Deprecation: variable line is shadowing variable contrib.undead.cstream.CFile.__unittest_L151_C3.line. Rename the foreach variable. ../contrib/undead/cstream.d(216): Deprecation: variable line is shadowing variable contrib.undead.cstream.CFile.__unittest_L151_C3.line. Rename the foreach variable. [105/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/contrib_undead_internal_file.d.o -c ../contrib/undead/internal/file.d [106/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_bgzf_virtualoffset.d.o -c ../bio/core/bgzf/virtualoffset.d [107/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_call.d.o -c ../bio/core/call.d [108/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/contrib_undead_doformat.d.o -c ../contrib/undead/doformat.d [109/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_region.d.o -c ../bio/core/region.d [110/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_bgzf_outputstream.d.o -c ../bio/core/bgzf/outputstream.d [111/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_genotype.d.o -c ../bio/core/genotype.d [112/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_algo.d.o -c ../bio/core/utils/algo.d [113/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_kmer.d.o -c ../bio/core/kmer.d [114/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_exception.d.o -c ../bio/core/utils/exception.d [115/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_bgzf_inputstream.d.o -c ../bio/core/bgzf/inputstream.d [116/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_decompress.d.o -c ../bio/core/decompress.d [117/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_outbuffer.d.o -c ../bio/core/utils/outbuffer.d [118/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_bylinefast.d.o -c ../bio/core/utils/bylinefast.d [119/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_sequence.d.o -c ../bio/core/sequence.d [120/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_format.d.o -c ../bio/core/utils/format.d [121/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_roundbuf.d.o -c ../bio/core/utils/roundbuf.d [122/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_switchendianness.d.o -c ../bio/core/utils/switchendianness.d [123/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_memoize.d.o -c ../bio/core/utils/memoize.d [124/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_zlib.d.o -c ../bio/core/utils/zlib.d [125/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_tinymap.d.o -c ../bio/core/tinymap.d ../bio/core/tinymap.d(76): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(101): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(76): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(101): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(61): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(256): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(257): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(258): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(262): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(267): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(61): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(256): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(257): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(258): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(262): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(267): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(76): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(101): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(61): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. [126/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_utils_samheadermerger.d.o -c ../bio/std/hts/utils/samheadermerger.d ../bio/std/hts/utils/samheadermerger.d(217): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/std/hts/utils/samheadermerger.d(222): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/std/hts/utils/samheadermerger.d(217): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/std/hts/utils/samheadermerger.d(222): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. [127/199] rm -f libbiod.a && ar csrD libbiod.a libbiod.so.0.2.3.p/contrib_undead_cstream.d.o libbiod.so.0.2.3.p/contrib_undead_doformat.d.o libbiod.so.0.2.3.p/contrib_undead_internal_file.d.o libbiod.so.0.2.3.p/contrib_undead_stream.d.o libbiod.so.0.2.3.p/contrib_undead_utf.d.o libbiod.so.0.2.3.p/bio_core_base.d.o libbiod.so.0.2.3.p/bio_core_bgzf_block.d.o libbiod.so.0.2.3.p/bio_core_bgzf_chunk.d.o libbiod.so.0.2.3.p/bio_core_bgzf_compress.d.o libbiod.so.0.2.3.p/bio_core_bgzf_constants.d.o libbiod.so.0.2.3.p/bio_core_bgzf_inputstream.d.o libbiod.so.0.2.3.p/bio_core_bgzf_outputstream.d.o libbiod.so.0.2.3.p/bio_core_bgzf_virtualoffset.d.o libbiod.so.0.2.3.p/bio_core_call.d.o libbiod.so.0.2.3.p/bio_core_decompress.d.o libbiod.so.0.2.3.p/bio_core_genotype.d.o libbiod.so.0.2.3.p/bio_core_kmer.d.o libbiod.so.0.2.3.p/bio_core_region.d.o libbiod.so.0.2.3.p/bio_core_sequence.d.o libbiod.so.0.2.3.p/bio_core_tinymap.d.o libbiod.so.0.2.3.p/bio_core_utils_algo.d.o libbiod.so.0.2.3.p/bio_core_utils_bylinefast.d.o libbiod.so.0.2.3.p/bio_core_utils_exception.d.o libbiod.so.0.2.3.p/bio_core_utils_format.d.o libbiod.so.0.2.3.p/bio_core_utils_memoize.d.o libbiod.so.0.2.3.p/bio_core_utils_outbuffer.d.o libbiod.so.0.2.3.p/bio_core_utils_range.d.o libbiod.so.0.2.3.p/bio_core_utils_roundbuf.d.o libbiod.so.0.2.3.p/bio_core_utils_stream.d.o libbiod.so.0.2.3.p/bio_core_utils_switchendianness.d.o libbiod.so.0.2.3.p/bio_core_utils_tmpfile.d.o libbiod.so.0.2.3.p/bio_core_utils_zlib.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_header.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_reader.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_writer.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bgzf.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bgzf_writer.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_constants.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_hashing.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_logger.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_pileup.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_reads.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_unpack.d.o libbiod.so.0.2.3.p/bio_std_file_fai.d.o libbiod.so.0.2.3.p/bio_std_file_fasta.d.o libbiod.so.0.2.3.p/bio_std_file_fastq.d.o libbiod.so.0.2.3.p/bio_std_genotype_maf.d.o libbiod.so.0.2.3.p/bio_std_genotype_snp.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_abstractreader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_bai_bin.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_baifile.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_bai_indexing.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_baseinfo.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_cigar.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_constants.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_core.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_operation.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_parse.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_reconstruct.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_multireader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_pileup.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_randomaccessmanager.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_read.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_reader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_readrange.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_reference.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_referenceinfo.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_region.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_splitter.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_tagvalue.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_validation_alignment.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_validation_samheader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_writer.d.o libbiod.so.0.2.3.p/bio_std_hts_iontorrent_flowcall.d.o libbiod.so.0.2.3.p/bio_std_hts_iontorrent_flowindex.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_header.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_reader.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_utils_fastrecordparser.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_utils_recordparser.d.o libbiod.so.0.2.3.p/bio_std_hts_snpcallers_maq.d.o libbiod.so.0.2.3.p/bio_std_hts_snpcallers_simple.d.o libbiod.so.0.2.3.p/bio_std_hts_thirdparty_msgpack.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_array.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_graph.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_samheadermerger.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_value.d.o libbiod.so.0.2.3.p/bio_std_maf_block.d.o libbiod.so.0.2.3.p/bio_std_maf_parser.d.o libbiod.so.0.2.3.p/bio_std_maf_reader.d.o libbiod.so.0.2.3.p/bio_std_range_splitter.d.o libbiod.so.0.2.3.p/bio_std_sff_constants.d.o libbiod.so.0.2.3.p/bio_std_sff_index.d.o libbiod.so.0.2.3.p/bio_std_sff_read.d.o libbiod.so.0.2.3.p/bio_std_sff_reader.d.o libbiod.so.0.2.3.p/bio_std_sff_readrange.d.o libbiod.so.0.2.3.p/bio_std_sff_utils_roundup.d.o libbiod.so.0.2.3.p/bio_std_sff_writer.d.o [128/199] ldc2 -of=libbiod.so.0.2.3 libbiod.so.0.2.3.p/contrib_undead_cstream.d.o libbiod.so.0.2.3.p/contrib_undead_doformat.d.o libbiod.so.0.2.3.p/contrib_undead_internal_file.d.o libbiod.so.0.2.3.p/contrib_undead_stream.d.o libbiod.so.0.2.3.p/contrib_undead_utf.d.o libbiod.so.0.2.3.p/bio_core_base.d.o libbiod.so.0.2.3.p/bio_core_bgzf_block.d.o libbiod.so.0.2.3.p/bio_core_bgzf_chunk.d.o libbiod.so.0.2.3.p/bio_core_bgzf_compress.d.o libbiod.so.0.2.3.p/bio_core_bgzf_constants.d.o libbiod.so.0.2.3.p/bio_core_bgzf_inputstream.d.o libbiod.so.0.2.3.p/bio_core_bgzf_outputstream.d.o libbiod.so.0.2.3.p/bio_core_bgzf_virtualoffset.d.o libbiod.so.0.2.3.p/bio_core_call.d.o libbiod.so.0.2.3.p/bio_core_decompress.d.o libbiod.so.0.2.3.p/bio_core_genotype.d.o libbiod.so.0.2.3.p/bio_core_kmer.d.o libbiod.so.0.2.3.p/bio_core_region.d.o libbiod.so.0.2.3.p/bio_core_sequence.d.o libbiod.so.0.2.3.p/bio_core_tinymap.d.o libbiod.so.0.2.3.p/bio_core_utils_algo.d.o libbiod.so.0.2.3.p/bio_core_utils_bylinefast.d.o libbiod.so.0.2.3.p/bio_core_utils_exception.d.o libbiod.so.0.2.3.p/bio_core_utils_format.d.o libbiod.so.0.2.3.p/bio_core_utils_memoize.d.o libbiod.so.0.2.3.p/bio_core_utils_outbuffer.d.o libbiod.so.0.2.3.p/bio_core_utils_range.d.o libbiod.so.0.2.3.p/bio_core_utils_roundbuf.d.o libbiod.so.0.2.3.p/bio_core_utils_stream.d.o libbiod.so.0.2.3.p/bio_core_utils_switchendianness.d.o libbiod.so.0.2.3.p/bio_core_utils_tmpfile.d.o libbiod.so.0.2.3.p/bio_core_utils_zlib.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_header.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_reader.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_writer.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bgzf.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bgzf_writer.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_constants.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_hashing.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_logger.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_pileup.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_reads.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_unpack.d.o libbiod.so.0.2.3.p/bio_std_file_fai.d.o libbiod.so.0.2.3.p/bio_std_file_fasta.d.o libbiod.so.0.2.3.p/bio_std_file_fastq.d.o libbiod.so.0.2.3.p/bio_std_genotype_maf.d.o libbiod.so.0.2.3.p/bio_std_genotype_snp.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_abstractreader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_bai_bin.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_baifile.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_bai_indexing.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_baseinfo.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_cigar.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_constants.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_core.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_operation.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_parse.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_reconstruct.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_multireader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_pileup.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_randomaccessmanager.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_read.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_reader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_readrange.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_reference.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_referenceinfo.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_region.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_splitter.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_tagvalue.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_validation_alignment.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_validation_samheader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_writer.d.o libbiod.so.0.2.3.p/bio_std_hts_iontorrent_flowcall.d.o libbiod.so.0.2.3.p/bio_std_hts_iontorrent_flowindex.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_header.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_reader.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_utils_fastrecordparser.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_utils_recordparser.d.o libbiod.so.0.2.3.p/bio_std_hts_snpcallers_maq.d.o libbiod.so.0.2.3.p/bio_std_hts_snpcallers_simple.d.o libbiod.so.0.2.3.p/bio_std_hts_thirdparty_msgpack.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_array.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_graph.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_samheadermerger.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_value.d.o libbiod.so.0.2.3.p/bio_std_maf_block.d.o libbiod.so.0.2.3.p/bio_std_maf_parser.d.o libbiod.so.0.2.3.p/bio_std_maf_reader.d.o libbiod.so.0.2.3.p/bio_std_range_splitter.d.o libbiod.so.0.2.3.p/bio_std_sff_constants.d.o libbiod.so.0.2.3.p/bio_std_sff_index.d.o libbiod.so.0.2.3.p/bio_std_sff_read.d.o libbiod.so.0.2.3.p/bio_std_sff_reader.d.o libbiod.so.0.2.3.p/bio_std_sff_readrange.d.o libbiod.so.0.2.3.p/bio_std_sff_utils_roundup.d.o libbiod.so.0.2.3.p/bio_std_sff_writer.d.o -L=-soname -L=libbiod.so.0 -L=--allow-shlib-undefined -link-defaultlib-shared -shared -relocation-model=pic -O -g -release -wi -L=-z -L=relro -L=-lz [129/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_stream.d.o -c ../bio/core/utils/stream.d [130/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_tmpfile.d.o -c ../bio/core/utils/tmpfile.d [131/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_constants.d.o -c ../bio/std/experimental/hts/constants.d [132/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_range.d.o -c ../bio/core/utils/range.d [133/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_bam_header.d.o -c ../bio/std/experimental/hts/bam/header.d [134/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_logger.d.o -c ../bio/std/experimental/hts/logger.d [135/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_bam_writer.d.o -c ../bio/std/experimental/hts/bam/writer.d [136/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_reads.d.o -c ../bio/std/experimental/hts/reads.d [137/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_hashing.d.o -c ../bio/std/experimental/hts/hashing.d [138/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_unpack.d.o -c ../bio/std/experimental/hts/unpack.d [139/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_bgzf_writer.d.o -c ../bio/std/experimental/hts/bgzf_writer.d [140/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_pileup.d.o -c ../bio/std/experimental/hts/pileup.d [141/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_genotype_maf.d.o -c ../bio/std/genotype/maf.d [142/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_file_fastq.d.o -c ../bio/std/file/fastq.d [143/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_bai_bin.d.o -c ../bio/std/hts/bam/bai/bin.d [144/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/contrib_undead_stream.d.o -c ../contrib/undead/stream.d ../contrib/undead/stream.d(2192): Deprecation: variable line is shadowing variable contrib.undead.stream.File.__unittest_L2139_C3.line. Rename the foreach variable. ../contrib/undead/stream.d(2202): Deprecation: variable line is shadowing variable contrib.undead.stream.File.__unittest_L2139_C3.line. Rename the foreach variable. [145/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_abstractreader.d.o -c ../bio/std/hts/bam/abstractreader.d [146/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_baifile.d.o -c ../bio/std/hts/bam/baifile.d [147/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_baseinfo.d.o -c ../bio/std/hts/bam/baseinfo.d [148/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_constants.d.o -c ../bio/std/hts/bam/constants.d [149/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_bam_reader.d.o -c ../bio/std/experimental/hts/bam/reader.d ../bio/std/experimental/hts/bam/reader.d(237): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(245): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(246): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(250): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(254): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(258): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(267): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(268): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(269): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(273): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(296): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(297): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(301): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(306): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(307): Deprecation: function std.typecons.Nullable!int.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(314): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(316): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(335): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(337): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(339): Deprecation: function std.typecons.Nullable!uint.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(355): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(356): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(371): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(373): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(392): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(412): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(491): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. [150/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_bgzf.d.o -c ../bio/std/experimental/hts/bgzf.d ../bio/std/experimental/hts/bgzf.d(202): Deprecation: function std.typecons.Nullable!ulong.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bgzf.d(212): Deprecation: function std.typecons.Nullable!ulong.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bgzf.d(418): Deprecation: function std.typecons.Nullable!int.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bgzf.d(425): Deprecation: function std.typecons.Nullable!int.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. [151/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_md_core.d.o -c ../bio/std/hts/bam/md/core.d [152/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_file_fasta.d.o -c ../bio/std/file/fasta.d [153/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_genotype_snp.d.o -c ../bio/std/genotype/snp.d [154/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_cigar.d.o -c ../bio/std/hts/bam/cigar.d [155/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_file_fai.d.o -c ../bio/std/file/fai.d [156/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_md_parse.d.o -c ../bio/std/hts/bam/md/parse.d ../bio/std/hts/bam/md/parse.d(49): Deprecation: returning this._cached_front escapes a reference to parameter this ../bio/std/hts/bam/md/parse.d(49): perhaps annotate the parameter with return ../bio/std/hts/bam/md/parse.d(53): Deprecation: returning this._cached_back escapes a reference to parameter this ../bio/std/hts/bam/md/parse.d(53): perhaps annotate the parameter with return [157/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_bai_indexing.d.o -c ../bio/std/hts/bam/bai/indexing.d [158/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_md_operation.d.o -c ../bio/std/hts/bam/md/operation.d ../bio/std/hts/bam/md/operation.d(57): Deprecation: returning this._match escapes a reference to parameter this ../bio/std/hts/bam/md/operation.d(57): perhaps annotate the parameter with return ../bio/std/hts/bam/md/operation.d(72): Deprecation: returning this._deletion escapes a reference to parameter this ../bio/std/hts/bam/md/operation.d(72): perhaps annotate the parameter with return [159/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_readrange.d.o -c ../bio/std/hts/bam/readrange.d [160/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_region.d.o -c ../bio/std/hts/bam/region.d [161/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_referenceinfo.d.o -c ../bio/std/hts/bam/referenceinfo.d [162/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_splitter.d.o -c ../bio/std/hts/bam/splitter.d [163/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_reference.d.o -c ../bio/std/hts/bam/reference.d [164/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_md_reconstruct.d.o -c ../bio/std/hts/bam/md/reconstruct.d [165/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_reader.d.o -c ../bio/std/hts/bam/reader.d [166/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_randomaccessmanager.d.o -c ../bio/std/hts/bam/randomaccessmanager.d [167/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_iontorrent_flowindex.d.o -c ../bio/std/hts/iontorrent/flowindex.d [168/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_validation_samheader.d.o -c ../bio/std/hts/bam/validation/samheader.d [169/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_read.d.o -c ../bio/std/hts/bam/read.d [170/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_writer.d.o -c ../bio/std/hts/bam/writer.d [171/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_multireader.d.o -c ../bio/std/hts/bam/multireader.d [172/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_iontorrent_flowcall.d.o -c ../bio/std/hts/iontorrent/flowcall.d [173/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_tagvalue.d.o -c ../bio/std/hts/bam/tagvalue.d [174/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_snpcallers_maq.d.o -c ../bio/std/hts/snpcallers/maq.d ../bio/core/tinymap.d(61): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(76): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(101): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. [175/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_sam_reader.d.o -c ../bio/std/hts/sam/reader.d [176/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_utils_array.d.o -c ../bio/std/hts/utils/array.d [177/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_validation_alignment.d.o -c ../bio/std/hts/bam/validation/alignment.d [178/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_snpcallers_simple.d.o -c ../bio/std/hts/snpcallers/simple.d [179/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_utils_graph.d.o -c ../bio/std/hts/utils/graph.d [180/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_maf_block.d.o -c ../bio/std/maf/block.d [181/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_utils_value.d.o -c ../bio/std/hts/utils/value.d [182/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_maf_reader.d.o -c ../bio/std/maf/reader.d [183/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_sff_constants.d.o -c ../bio/std/sff/constants.d [184/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_maf_parser.d.o -c ../bio/std/maf/parser.d [185/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_sff_index.d.o -c ../bio/std/sff/index.d [186/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_sff_read.d.o -c ../bio/std/sff/read.d [187/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_range_splitter.d.o -c ../bio/std/range/splitter.d [188/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_sff_utils_roundup.d.o -c ../bio/std/sff/utils/roundup.d [189/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_sff_writer.d.o -c ../bio/std/sff/writer.d [190/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_sff_reader.d.o -c ../bio/std/sff/reader.d [191/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/_build_libbiod-0.2.3+git20191120.b8eecef_obj-aarch64-linux-gnu_utmain.d.o -c /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/utmain.d [192/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_sff_readrange.d.o -c ../bio/std/sff/readrange.d [193/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_sam_utils_recordparser.d.o -c ../bio/std/hts/sam/utils/recordparser.d sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(52): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(60): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable sam_alignment.rl(69): Warning: statement is not reachable sam_alignment.rl(76): Warning: statement is not reachable sam_alignment.rl(77): Warning: statement is not reachable sam_alignment.rl(82): Warning: statement is not reachable sam_alignment.rl(83): Warning: statement is not reachable sam_alignment.rl(131): Warning: statement is not reachable sam_alignment.rl(132): Warning: statement is not reachable sam_alignment.rl(163): Warning: statement is not reachable sam_alignment.rl(164): Warning: statement is not reachable sam_alignment.rl(176): Warning: statement is not reachable sam_alignment.rl(177): Warning: statement is not reachable sam_alignment.rl(188): Warning: statement is not reachable sam_alignment.rl(189): Warning: statement is not reachable sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(222): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(252): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable sam_alignment.rl(409): Warning: statement is not reachable sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable sam_alignment.rl(76): Warning: statement is not reachable sam_alignment.rl(82): Warning: statement is not reachable sam_alignment.rl(131): Warning: statement is not reachable sam_alignment.rl(163): Warning: statement is not reachable sam_alignment.rl(176): Warning: statement is not reachable sam_alignment.rl(188): Warning: statement is not reachable sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable [194/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_sam_header.d.o -c ../bio/std/hts/sam/header.d [195/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_sam_utils_fastrecordparser.d.o -c ../bio/std/hts/sam/utils/fastrecordparser.d sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable sam_alignment.rl(76): Warning: statement is not reachable sam_alignment.rl(82): Warning: statement is not reachable sam_alignment.rl(131): Warning: statement is not reachable sam_alignment.rl(163): Warning: statement is not reachable sam_alignment.rl(176): Warning: statement is not reachable sam_alignment.rl(188): Warning: statement is not reachable sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable sam_alignment.rl(52): Warning: statement is not reachable sam_alignment.rl(60): Warning: statement is not reachable sam_alignment.rl(69): Warning: statement is not reachable sam_alignment.rl(77): Warning: statement is not reachable sam_alignment.rl(83): Warning: statement is not reachable sam_alignment.rl(132): Warning: statement is not reachable sam_alignment.rl(164): Warning: statement is not reachable sam_alignment.rl(177): Warning: statement is not reachable sam_alignment.rl(189): Warning: statement is not reachable sam_alignment.rl(222): Warning: statement is not reachable sam_alignment.rl(252): Warning: statement is not reachable sam_alignment.rl(409): Warning: statement is not reachable sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable sam_alignment.rl(76): Warning: statement is not reachable sam_alignment.rl(82): Warning: statement is not reachable sam_alignment.rl(131): Warning: statement is not reachable sam_alignment.rl(163): Warning: statement is not reachable sam_alignment.rl(176): Warning: statement is not reachable sam_alignment.rl(188): Warning: statement is not reachable sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable [196/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_thirdparty_msgpack.d.o -c ../bio/std/hts/thirdparty/msgpack.d ../bio/std/hts/thirdparty/msgpack.d(2033): Deprecation: integral promotion not done for -header, use '-preview=intpromote' switch or -cast(int)(header) ../bio/std/hts/thirdparty/msgpack.d(2033): Deprecation: integral promotion not done for -header, use '-preview=intpromote' switch or -cast(int)(header) ../bio/std/hts/thirdparty/msgpack.d(2033): Deprecation: integral promotion not done for -cast(byte)-header, use '-preview=intpromote' switch or -cast(int)(cast(byte)-header) ../bio/std/hts/thirdparty/msgpack.d(2033): Deprecation: integral promotion not done for -header, use '-preview=intpromote' switch or -cast(int)(header) ../bio/std/hts/thirdparty/msgpack.d(2033): Deprecation: integral promotion not done for -cast(short)-header, use '-preview=intpromote' switch or -cast(int)(cast(short)-header) ../bio/std/hts/thirdparty/msgpack.d(2033): Deprecation: integral promotion not done for -header, use '-preview=intpromote' switch or -cast(int)(header) ../bio/std/hts/thirdparty/msgpack.d(1116): Deprecation: returning this.vecList_ escapes a reference to parameter this ../bio/std/hts/thirdparty/msgpack.d(1116): perhaps annotate the parameter with return [197/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_utils_samheadermerger.d.o -c ../bio/std/hts/utils/samheadermerger.d ../bio/std/hts/utils/samheadermerger.d(217): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/std/hts/utils/samheadermerger.d(222): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/std/hts/utils/samheadermerger.d(217): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/std/hts/utils/samheadermerger.d(222): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. [198/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/test_unittests.d.o -c ../test/unittests.d [199/199] ldc2 -of=biod_test biod_test.p/contrib_undead_cstream.d.o biod_test.p/contrib_undead_doformat.d.o biod_test.p/contrib_undead_internal_file.d.o biod_test.p/contrib_undead_stream.d.o biod_test.p/contrib_undead_utf.d.o biod_test.p/bio_core_base.d.o biod_test.p/bio_core_bgzf_block.d.o biod_test.p/bio_core_bgzf_chunk.d.o biod_test.p/bio_core_bgzf_compress.d.o biod_test.p/bio_core_bgzf_constants.d.o biod_test.p/bio_core_bgzf_inputstream.d.o biod_test.p/bio_core_bgzf_outputstream.d.o biod_test.p/bio_core_bgzf_virtualoffset.d.o biod_test.p/bio_core_call.d.o biod_test.p/bio_core_decompress.d.o biod_test.p/bio_core_genotype.d.o biod_test.p/bio_core_kmer.d.o biod_test.p/bio_core_region.d.o biod_test.p/bio_core_sequence.d.o biod_test.p/bio_core_tinymap.d.o biod_test.p/bio_core_utils_algo.d.o biod_test.p/bio_core_utils_bylinefast.d.o biod_test.p/bio_core_utils_exception.d.o biod_test.p/bio_core_utils_format.d.o biod_test.p/bio_core_utils_memoize.d.o biod_test.p/bio_core_utils_outbuffer.d.o biod_test.p/bio_core_utils_range.d.o biod_test.p/bio_core_utils_roundbuf.d.o biod_test.p/bio_core_utils_stream.d.o biod_test.p/bio_core_utils_switchendianness.d.o biod_test.p/bio_core_utils_tmpfile.d.o biod_test.p/bio_core_utils_zlib.d.o biod_test.p/bio_std_experimental_hts_bam_header.d.o biod_test.p/bio_std_experimental_hts_bam_reader.d.o biod_test.p/bio_std_experimental_hts_bam_writer.d.o biod_test.p/bio_std_experimental_hts_bgzf.d.o biod_test.p/bio_std_experimental_hts_bgzf_writer.d.o biod_test.p/bio_std_experimental_hts_constants.d.o biod_test.p/bio_std_experimental_hts_hashing.d.o biod_test.p/bio_std_experimental_hts_logger.d.o biod_test.p/bio_std_experimental_hts_pileup.d.o biod_test.p/bio_std_experimental_hts_reads.d.o biod_test.p/bio_std_experimental_hts_unpack.d.o biod_test.p/bio_std_file_fai.d.o biod_test.p/bio_std_file_fasta.d.o biod_test.p/bio_std_file_fastq.d.o biod_test.p/bio_std_genotype_maf.d.o biod_test.p/bio_std_genotype_snp.d.o biod_test.p/bio_std_hts_bam_abstractreader.d.o biod_test.p/bio_std_hts_bam_bai_bin.d.o biod_test.p/bio_std_hts_bam_baifile.d.o biod_test.p/bio_std_hts_bam_bai_indexing.d.o biod_test.p/bio_std_hts_bam_baseinfo.d.o biod_test.p/bio_std_hts_bam_cigar.d.o biod_test.p/bio_std_hts_bam_constants.d.o biod_test.p/bio_std_hts_bam_md_core.d.o biod_test.p/bio_std_hts_bam_md_operation.d.o biod_test.p/bio_std_hts_bam_md_parse.d.o biod_test.p/bio_std_hts_bam_md_reconstruct.d.o biod_test.p/bio_std_hts_bam_multireader.d.o biod_test.p/bio_std_hts_bam_pileup.d.o biod_test.p/bio_std_hts_bam_randomaccessmanager.d.o biod_test.p/bio_std_hts_bam_read.d.o biod_test.p/bio_std_hts_bam_reader.d.o biod_test.p/bio_std_hts_bam_readrange.d.o biod_test.p/bio_std_hts_bam_reference.d.o biod_test.p/bio_std_hts_bam_referenceinfo.d.o biod_test.p/bio_std_hts_bam_region.d.o biod_test.p/bio_std_hts_bam_splitter.d.o biod_test.p/bio_std_hts_bam_tagvalue.d.o biod_test.p/bio_std_hts_bam_validation_alignment.d.o biod_test.p/bio_std_hts_bam_validation_samheader.d.o biod_test.p/bio_std_hts_bam_writer.d.o biod_test.p/bio_std_hts_iontorrent_flowcall.d.o biod_test.p/bio_std_hts_iontorrent_flowindex.d.o biod_test.p/bio_std_hts_sam_header.d.o biod_test.p/bio_std_hts_sam_reader.d.o biod_test.p/bio_std_hts_sam_utils_fastrecordparser.d.o biod_test.p/bio_std_hts_sam_utils_recordparser.d.o biod_test.p/bio_std_hts_snpcallers_maq.d.o biod_test.p/bio_std_hts_snpcallers_simple.d.o biod_test.p/bio_std_hts_thirdparty_msgpack.d.o biod_test.p/bio_std_hts_utils_array.d.o biod_test.p/bio_std_hts_utils_graph.d.o biod_test.p/bio_std_hts_utils_samheadermerger.d.o biod_test.p/bio_std_hts_utils_value.d.o biod_test.p/bio_std_maf_block.d.o biod_test.p/bio_std_maf_parser.d.o biod_test.p/bio_std_maf_reader.d.o biod_test.p/bio_std_range_splitter.d.o biod_test.p/bio_std_sff_constants.d.o biod_test.p/bio_std_sff_index.d.o biod_test.p/bio_std_sff_read.d.o biod_test.p/bio_std_sff_reader.d.o biod_test.p/bio_std_sff_readrange.d.o biod_test.p/bio_std_sff_utils_roundup.d.o biod_test.p/bio_std_sff_writer.d.o biod_test.p/test_unittests.d.o biod_test.p/_build_libbiod-0.2.3+git20191120.b8eecef_obj-aarch64-linux-gnu_utmain.d.o -L=--allow-shlib-undefined -link-defaultlib-shared -O -g -release -wi -L=-z -L=relro -L=-lz debian/rules override_dh_auto_test make[1]: Entering directory '/build/libbiod-0.2.3+git20191120.b8eecef' # we ignore test failures for now, the tests fail to find a few files correctly dh_auto_test cd obj-aarch64-linux-gnu && LC_ALL=C.UTF-8 MESON_TESTTHREADS=8 ninja test [0/1] Running all tests. The output from the failed tests: 1/1 biod_tests FAIL 0.02s (killed by signal 11 SIGSEGV) --- command --- 11:59:35 /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test --DRT-gcopt=gc:precise disable:1 cleanup:none --- stderr --- /usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D4core7runtime18runModuleUnitTestsUZ19unittestSegvHandlerUNbiPSQCk3sys5posix6signal9siginfo_tPvZv+0x24)[0xffffa9d1f7d0] linux-vdso.so.1(__kernel_rt_sigreturn+0x0)[0xffffaa23e688] /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x9bb38)[0xaaaae4a02b38] /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x9b99c)[0xaaaae4a0299c] /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x9b708)[0xaaaae4a02708] /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x9a020)[0xaaaae4a01020] /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0xa2fc4)[0xaaaae4a09fc4] /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0xa2f84)[0xaaaae4a09f84] /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0xaa89c)[0xaaaae4a1189c] /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0xbf19c)[0xaaaae4a2619c] /usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D4core7runtime18runModuleUnitTestsUZ14__foreachbody2MFPS6object10ModuleInfoZi+0x38)[0xffffa9d1f824] /usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D2rt5minfo17moduleinfos_applyFMDFyPS6object10ModuleInfoZiZ14__foreachbody2MFKSQCz19sections_elf_shared3DSOZi+0x40)[0xffffa9d490d0] /usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D2rt19sections_elf_shared3DSO7opApplyFMDFKSQBqQBqQyZiZi+0x48)[0xffffa9d4a44c] /usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D2rt5minfo17moduleinfos_applyFMDFyPS6object10ModuleInfoZiZi+0x1c)[0xffffa9d49068] /usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D6object10ModuleInfo7opApplyFMDFPSQBhQBdZiZi+0x1c)[0xffffa9d36374] /usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(runModuleUnitTests+0xd8)[0xffffa9d1f6ac] /usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D2rt6dmain212_d_run_main2UAAamPUQgZiZ6runAllMFZv+0x1c)[0xffffa9d3fe20] /usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_d_run_main2+0x17c)[0xffffa9d3fc4c] /usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_d_run_main+0x94)[0xffffa9d3fab4] /lib/aarch64-linux-gnu/libc.so.6(__libc_start_main+0xe8)[0xffffa9a1c218] /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x97f24)[0xaaaae49fef24] ------- Summary of Failures: 1/1 biod_tests FAIL 0.02s (killed by signal 11 SIGSEGV) Ok: 0 Expected Fail: 0 Fail: 1 Unexpected Pass: 0 Skipped: 0 Timeout: 0 Full log written to /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/meson-logs/testlog.txt FAILED: meson-test /usr/bin/meson test --no-rebuild --print-errorlogs ninja: build stopped: subcommand failed. cd obj-aarch64-linux-gnu && tail -v -n \+0 meson-logs/testlog.txt ==> meson-logs/testlog.txt <== Log of Meson test suite run on 2021-08-14T23:59:35.184638 Inherited environment: DEB_HOST_GNU_SYSTEM='linux-gnu' SUDO_GID='117' DFLAGS='-O -g -release -wi' DEB_BUILD_ARCH_BITS='64' DEB_TARGET_GNU_CPU='aarch64' MAIL='/var/mail/root' DEB_HOST_ARCH_OS='linux' LANGUAGE='en_US:en' USER='pbuilder1' CXXFLAGS='-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong -Wformat -Werror=format-security' DEB_BUILD_GNU_TYPE='aarch64-linux-gnu' BUILDUSERNAME='pbuilder1' DEB_TARGET_MULTIARCH='aarch64-linux-gnu' OBJCFLAGS='-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong -Wformat -Werror=format-security' DH_INTERNAL_OPTIONS='-O--buildsystem=meson' DEB_BUILD_ARCH_CPU='arm64' SHLVL='2' DEB_HOST_ARCH_LIBC='gnu' DEB_HOST_ARCH_ABI='base' OLDPWD='/' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' HOME='/nonexistent/first-build' DEB_BUILD_ARCH_ENDIAN='little' LDFLAGS='-Wl,-z,relro' DEB_TARGET_ARCH_BITS='64' DEB_BUILD_GNU_SYSTEM='linux-gnu' MAKEFLAGS='w' PBUILDER_OPERATION='build' DEB_BUILD_ARCH_OS='linux' DEB_TARGET_GNU_TYPE='aarch64-linux-gnu' SUDO_UID='110' PBUILDER_PKGDATADIR='/usr/share/pbuilder' DEB_TARGET_ARCH_CPU='arm64' DC='ldc2' LOGNAME='pbuilder1' DEB_BUILD_ARCH_LIBC='gnu' DEB_BUILD_ARCH_ABI='base' PBUILDER_SYSCONFDIR='/etc' _='/usr/bin/unshare' DEB_HOST_ARCH='arm64' DEB_TARGET_ARCH_ENDIAN='little' USERNAME='root' TERM='unknown' DH_INTERNAL_OVERRIDE='dh_auto_test' DEB_HOST_GNU_CPU='aarch64' DEB_TARGET_GNU_SYSTEM='linux-gnu' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' MESON_TESTTHREADS='8' DEB_TARGET_ARCH_OS='linux' CFLAGS='-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong -Wformat -Werror=format-security' MAKELEVEL='2' DEB_HOST_MULTIARCH='aarch64-linux-gnu' SOURCE_DATE_EPOCH='1579034133' FCFLAGS='-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong' OBJCXXFLAGS='-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong -Wformat -Werror=format-security' LANG='C' LD_PRELOAD='' DEB_TARGET_ARCH_LIBC='gnu' DEB_TARGET_ARCH_ABI='base' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.mQg1DmYECw/pbuilderrc_9Id2 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.mQg1DmYECw/b1 --logfile b1/build.log libbiod_0.2.3+git20191120.b8eecef-2.dsc' CPPFLAGS='-Wdate-time -D_FORTIFY_SOURCE=2' DEBIAN_FRONTEND='noninteractive' DH_INTERNAL_BUILDFLAGS='1' SHELL='/bin/bash' DEB_HOST_ARCH_BITS='64' DEB_BUILD_ARCH='arm64' SUDO_USER='jenkins' DEB_BUILD_GNU_CPU='aarch64' DEB_HOST_GNU_TYPE='aarch64-linux-gnu' LC_ALL='C.UTF-8' PWD='/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu' DEB_HOST_ARCH_CPU='arm64' DEB_RULES_REQUIRES_ROOT='binary-targets' FFLAGS='-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong' DEB_BUILD_MULTIARCH='aarch64-linux-gnu' MFLAGS='-w' TZ='/usr/share/zoneinfo/Etc/GMT+12' GCJFLAGS='-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong' PBCURRENTCOMMANDLINEOPERATION='build' DEB_HOST_ARCH_ENDIAN='little' DEB_TARGET_ARCH='arm64' 1/1 biod_tests FAIL 0.02s (killed by signal 11 SIGSEGV) --- command --- 11:59:35 /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test --DRT-gcopt=gc:precise disable:1 cleanup:none --- stderr --- /usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D4core7runtime18runModuleUnitTestsUZ19unittestSegvHandlerUNbiPSQCk3sys5posix6signal9siginfo_tPvZv+0x24)[0xffffa9d1f7d0] linux-vdso.so.1(__kernel_rt_sigreturn+0x0)[0xffffaa23e688] /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x9bb38)[0xaaaae4a02b38] /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x9b99c)[0xaaaae4a0299c] /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x9b708)[0xaaaae4a02708] /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x9a020)[0xaaaae4a01020] /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0xa2fc4)[0xaaaae4a09fc4] /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0xa2f84)[0xaaaae4a09f84] /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0xaa89c)[0xaaaae4a1189c] /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0xbf19c)[0xaaaae4a2619c] /usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D4core7runtime18runModuleUnitTestsUZ14__foreachbody2MFPS6object10ModuleInfoZi+0x38)[0xffffa9d1f824] /usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D2rt5minfo17moduleinfos_applyFMDFyPS6object10ModuleInfoZiZ14__foreachbody2MFKSQCz19sections_elf_shared3DSOZi+0x40)[0xffffa9d490d0] /usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D2rt19sections_elf_shared3DSO7opApplyFMDFKSQBqQBqQyZiZi+0x48)[0xffffa9d4a44c] /usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D2rt5minfo17moduleinfos_applyFMDFyPS6object10ModuleInfoZiZi+0x1c)[0xffffa9d49068] /usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D6object10ModuleInfo7opApplyFMDFPSQBhQBdZiZi+0x1c)[0xffffa9d36374] /usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(runModuleUnitTests+0xd8)[0xffffa9d1f6ac] /usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D2rt6dmain212_d_run_main2UAAamPUQgZiZ6runAllMFZv+0x1c)[0xffffa9d3fe20] /usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_d_run_main2+0x17c)[0xffffa9d3fc4c] /usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_d_run_main+0x94)[0xffffa9d3fab4] /lib/aarch64-linux-gnu/libc.so.6(__libc_start_main+0xe8)[0xffffa9a1c218] /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x97f24)[0xaaaae49fef24] ------- Summary of Failures: 1/1 biod_tests FAIL 0.02s (killed by signal 11 SIGSEGV) Ok: 0 Expected Fail: 0 Fail: 1 Unexpected Pass: 0 Skipped: 0 Timeout: 0 dh_auto_test: error: cd obj-aarch64-linux-gnu && LC_ALL=C.UTF-8 MESON_TESTTHREADS=8 ninja test returned exit code 1 make[1]: [debian/rules:17: override_dh_auto_test] Error 25 (ignored) make[1]: Leaving directory '/build/libbiod-0.2.3+git20191120.b8eecef' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --buildsystem=meson dh_testroot -O--buildsystem=meson dh_prep -O--buildsystem=meson dh_auto_install -O--buildsystem=meson cd obj-aarch64-linux-gnu && DESTDIR=/build/libbiod-0.2.3\+git20191120.b8eecef/debian/tmp LC_ALL=C.UTF-8 ninja install [0/1] Installing files. Installing subdir /build/libbiod-0.2.3+git20191120.b8eecef/bio to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/sff/writer.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/sff Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/sff/readrange.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/sff Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/sff/reader.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/sff Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/sff/read.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/sff Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/sff/index.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/sff Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/sff/constants.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/sff Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/sff/utils/roundup.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/sff/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/range/splitter.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/range Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/maf/reader.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/maf Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/maf/parser.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/maf Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/maf/block.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/maf Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/utils/value.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/utils/samheadermerger.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/utils/graph.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/utils/array.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/thirdparty/msgpack.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/thirdparty Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/snpcallers/simple.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/snpcallers Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/snpcallers/maq.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/snpcallers Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/sam/reader.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/sam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/sam/header.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/sam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/sam/utils/recordparser.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/sam/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/sam/utils/fastrecordparser.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/sam/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/iontorrent/flowindex.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/iontorrent Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/iontorrent/flowcall.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/iontorrent Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/writer.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/tagvalue.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/splitter.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/region.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/referenceinfo.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/reference.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/readrange.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/reader.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/read.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/randomaccessmanager.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/pileup.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/multireader.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/constants.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/cigar.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/baseinfo.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/baifile.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/abstractreader.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/validation/samheader.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam/validation Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/validation/alignment.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam/validation Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/md/reconstruct.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam/md Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/md/parse.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam/md Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/md/operation.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam/md Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/md/core.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam/md Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/bai/indexing.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam/bai Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/bai/bin.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam/bai Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/genotype/snp.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/genotype Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/genotype/maf.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/genotype Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/file/fastq.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/file Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/file/fasta.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/file Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/file/fai.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/file Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/unpack.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/experimental/hts Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/reads.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/experimental/hts Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/pileup.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/experimental/hts Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/logger.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/experimental/hts Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/hashing.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/experimental/hts Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/constants.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/experimental/hts Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/bgzf_writer.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/experimental/hts Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/bgzf.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/experimental/hts Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/README.md to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/experimental/hts Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/bam/writer.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/experimental/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/bam/reader.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/experimental/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/bam/header.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/experimental/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/etc/ragel/sam_alignment.rl to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/etc/ragel Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/etc/ragel/region.rl to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/etc/ragel Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/etc/ragel/maf_block.rl to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/etc/ragel Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/etc/ragel/Makefile to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/etc/ragel Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/etc/ragel/workarounds/fix_switch_case_fallthrough.sh to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/etc/ragel/workarounds Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/etc/ragel/workarounds/fix_static_const.sh to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/etc/ragel/workarounds Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/tinymap.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/sequence.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/region.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/kmer.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/genotype.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/decompress.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/call.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/base.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/zlib.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/tmpfile.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/switchendianness.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/stream.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/roundbuf.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/range.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/outbuffer.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/memoize.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/format.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/exception.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/bylinefast.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/algo.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/bgzf/virtualoffset.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/bgzf Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/bgzf/outputstream.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/bgzf Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/bgzf/inputstream.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/bgzf Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/bgzf/constants.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/bgzf Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/bgzf/compress.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/bgzf Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/bgzf/chunk.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/bgzf Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/bgzf/block.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/bgzf Installing subdir /build/libbiod-0.2.3+git20191120.b8eecef/contrib/undead to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/contrib/undead Installing /build/libbiod-0.2.3+git20191120.b8eecef/contrib/undead/utf.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/contrib/undead Installing /build/libbiod-0.2.3+git20191120.b8eecef/contrib/undead/stream.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/contrib/undead Installing /build/libbiod-0.2.3+git20191120.b8eecef/contrib/undead/doformat.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/contrib/undead Installing /build/libbiod-0.2.3+git20191120.b8eecef/contrib/undead/cstream.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/contrib/undead Installing /build/libbiod-0.2.3+git20191120.b8eecef/contrib/undead/README.md to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/contrib/undead Installing /build/libbiod-0.2.3+git20191120.b8eecef/contrib/undead/LICENSE to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/contrib/undead Installing /build/libbiod-0.2.3+git20191120.b8eecef/contrib/undead/internal/file.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/contrib/undead/internal Installing libbiod.so.0.2.3 to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/lib/aarch64-linux-gnu Installing libbiod.a to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/lib/aarch64-linux-gnu Installing /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/meson-private/biod.pc to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig dh_install -O--buildsystem=meson dh_installdocs -O--buildsystem=meson dh_installchangelogs -O--buildsystem=meson dh_installinit -O--buildsystem=meson dh_installsystemduser -O--buildsystem=meson dh_perl -O--buildsystem=meson dh_link -O--buildsystem=meson dh_strip_nondeterminism -O--buildsystem=meson dh_compress -O--buildsystem=meson dh_fixperms -O--buildsystem=meson debian/rules override_dh_missing make[1]: Entering directory '/build/libbiod-0.2.3+git20191120.b8eecef' dh_missing --fail-missing make[1]: Leaving directory '/build/libbiod-0.2.3+git20191120.b8eecef' dh_dwz -O--buildsystem=meson dh_strip -O--buildsystem=meson dh_makeshlibs -O--buildsystem=meson dh_shlibdeps -O--buildsystem=meson dpkg-shlibdeps: warning: symbol _D3std11parallelism__T4TaskS_D3bioQBg12experimental3hts11bgzf_writer16bgzfCompressFuncFAhiQdDFQhQjZvZSQDw8typecons__T5TupleTQBlTQBpTDFQBvQByZvZQBaTQCiTiTQCoTQzZQFi6__initZ used by debian/libbiod0/usr/lib/aarch64-linux-gnu/libbiod.so.0.2.3 found in none of the libraries dpkg-shlibdeps: warning: symbol _D4core8internal5array8equality__T8__equalsTxPS3std11parallelism__T4TaskS_D3bioQBg12experimental3hts11bgzf_writer16bgzfCompressFuncFAhiQdDFQhQjZvZSQDw8typecons__T5TupleTQBlTQBpTDFQBvQByZvZQBaTQCiTiTQCoTQzZQFiTxQGjZQGyFNaNbNiNfMAxQHcMQgZb used by debian/libbiod0/usr/lib/aarch64-linux-gnu/libbiod.so.0.2.3 found in none of the libraries dpkg-shlibdeps: warning: symbol _D3std11parallelism__T4TaskS_D3bioQBg12experimental3hts11bgzf_writer16bgzfCompressFuncFAhiQdDFQhQjZvZSQDw8typecons__T5TupleTQBlTQBpTDFQBvQByZvZQBaTQCiTiTQCoTQzZQFi10yieldForceMFNcNdNeZQDf used by debian/libbiod0/usr/lib/aarch64-linux-gnu/libbiod.so.0.2.3 found in none of the libraries dh_installdeb -O--buildsystem=meson dh_gencontrol -O--buildsystem=meson dpkg-gencontrol: warning: Depends field of package libbiod-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=meson dh_builddeb -O--buildsystem=meson dpkg-deb: building package 'libbiod0-dbgsym' in '../libbiod0-dbgsym_0.2.3+git20191120.b8eecef-2_arm64.deb'. dpkg-deb: building package 'libbiod0' in '../libbiod0_0.2.3+git20191120.b8eecef-2_arm64.deb'. dpkg-deb: building package 'libbiod-dev' in '../libbiod-dev_0.2.3+git20191120.b8eecef-2_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libbiod_0.2.3+git20191120.b8eecef-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/23652 and its subdirectories I: Current time: Sun Aug 15 00:00:08 -12 2021 I: pbuilder-time-stamp: 1629028808 Sun Aug 15 12:00:10 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink13-arm64.debian.net. Sun Aug 15 12:00:10 UTC 2021 I: Preparing to do remote build '2' on codethink13-arm64.debian.net. Sun Aug 15 12:09:38 UTC 2021 I: Deleting $TMPDIR on codethink13-arm64.debian.net. Sun Aug 15 12:09:39 UTC 2021 I: libbiod_0.2.3+git20191120.b8eecef-2_arm64.changes: Format: 1.8 Date: Tue, 14 Jan 2020 21:35:33 +0100 Source: libbiod Binary: libbiod-dev libbiod0 libbiod0-dbgsym Architecture: arm64 Version: 0.2.3+git20191120.b8eecef-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libbiod-dev - bioinformatics library in D (development files) libbiod0 - bioinformatics library in D Closes: 948918 Changes: libbiod (0.2.3+git20191120.b8eecef-2) unstable; urgency=medium . * Restrict architectures to amd64 and arm64 where the package really builds Closes: #948918 Checksums-Sha1: dd37fe46c2cecbbf8da14c117dc53694517d10be 1192500 libbiod-dev_0.2.3+git20191120.b8eecef-2_arm64.deb 23f8659cfc56c923b38bc871b0391dadbceb44ee 2775012 libbiod0-dbgsym_0.2.3+git20191120.b8eecef-2_arm64.deb f97cbba3a8afc586671ef5293eacad7ed71cbbca 519972 libbiod0_0.2.3+git20191120.b8eecef-2_arm64.deb c2a6f31f2a77d1c880ca2384668c217231bcc4e1 6217 libbiod_0.2.3+git20191120.b8eecef-2_arm64.buildinfo Checksums-Sha256: 4e7bc0f8ef248418e1ebd1d3ac1e8b2ac02839c843c4bfb0c078d2440611ab06 1192500 libbiod-dev_0.2.3+git20191120.b8eecef-2_arm64.deb 36ae2ee85bcc25b2f7d8c402bda5216b20a7105f7903e5a32b368d38d3dd4202 2775012 libbiod0-dbgsym_0.2.3+git20191120.b8eecef-2_arm64.deb 882766a7d02cdfc815ea861cf2956a2cb4d14cac9820d4c8b2fa9a43e170879b 519972 libbiod0_0.2.3+git20191120.b8eecef-2_arm64.deb 841baf3f5af12428ea8ac91724a6b7c08357fc2e4984ed13d8c4c45dd087dd55 6217 libbiod_0.2.3+git20191120.b8eecef-2_arm64.buildinfo Files: c69e568673fef96c06e6d2ec953d1994 1192500 libdevel optional libbiod-dev_0.2.3+git20191120.b8eecef-2_arm64.deb 9e0ca845c8f32deb9831e5ce9c64f31a 2775012 debug optional libbiod0-dbgsym_0.2.3+git20191120.b8eecef-2_arm64.deb 6cfb86c81e0a64febf5db77d4d49c3ae 519972 libs optional libbiod0_0.2.3+git20191120.b8eecef-2_arm64.deb b3c25f82f1953e0e9fb2cb25a39381a1 6217 science optional libbiod_0.2.3+git20191120.b8eecef-2_arm64.buildinfo Sun Aug 15 12:09:40 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.mQg1DmYECw/libbiod_0.2.3+git20191120.b8eecef-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.mQg1DmYECw/libbiod_0.2.3+git20191120.b8eecef-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.mQg1DmYECw/libbiod_0.2.3+git20191120.b8eecef-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.mQg1DmYECw/b1/libbiod_0.2.3+git20191120.b8eecef-2_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.mQg1DmYECw/b2/libbiod_0.2.3+git20191120.b8eecef-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.608s) 0.608s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.067s) 0.066s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Sun Aug 15 12:09:44 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Sun Aug 15 12:09:44 UTC 2021 I: libbiod from bullseye built successfully and reproducibly on arm64. Sun Aug 15 12:09:46 UTC 2021 I: Submitting .buildinfo files to external archives: Sun Aug 15 12:09:46 UTC 2021 I: Submitting 8.0K b1/libbiod_0.2.3+git20191120.b8eecef-2_arm64.buildinfo.asc Sun Aug 15 12:09:47 UTC 2021 I: Submitting 8.0K b2/libbiod_0.2.3+git20191120.b8eecef-2_arm64.buildinfo.asc Sun Aug 15 12:09:47 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Aug 15 12:09:47 UTC 2021 I: Done submitting .buildinfo files. Sun Aug 15 12:09:47 UTC 2021 I: Removing signed libbiod_0.2.3+git20191120.b8eecef-2_arm64.buildinfo.asc files: removed './b1/libbiod_0.2.3+git20191120.b8eecef-2_arm64.buildinfo.asc' removed './b2/libbiod_0.2.3+git20191120.b8eecef-2_arm64.buildinfo.asc'