Tue Aug 10 11:52:50 UTC 2021 I: starting to build htseq/bullseye/arm64 on jenkins on '2021-08-10 11:52' Tue Aug 10 11:52:50 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_8/26512/console.log Tue Aug 10 11:52:50 UTC 2021 I: Downloading source for bullseye/htseq=0.13.5-1 --2021-08-10 11:52:50-- http://cdn-fastly.deb.debian.org/debian/pool/main/h/htseq/htseq_0.13.5-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2155 (2.1K) Saving to: ‘htseq_0.13.5-1.dsc’ 0K .. 100% 118M=0s 2021-08-10 11:52:50 (118 MB/s) - ‘htseq_0.13.5-1.dsc’ saved [2155/2155] Tue Aug 10 11:52:50 UTC 2021 I: htseq_0.13.5-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: htseq Binary: python3-htseq Architecture: any Version: 0.13.5-1 Maintainer: Debian Med Packaging Team Uploaders: Diane Trout , Andreas Tille Homepage: https://www-huber.embl.de/users/anders/HTSeq/doc/overview.html Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/htseq Vcs-Git: https://salsa.debian.org/med-team/htseq.git Testsuite: autopkgtest-pkg-python Build-Depends: 2to3, debhelper-compat (= 13), dh-python, python3-debian, python3-setuptools, python3-all-dev, python3-numpy, python3-matplotlib, python3-pysam, swig, cython3 Package-List: python3-htseq deb python optional arch=any Checksums-Sha1: 69b3417ff194e09011f03b538af42e2a476a5d62 318076 htseq_0.13.5.orig.tar.gz 703f3df82784b99dfcfedc6519f8d81aaa379c14 11068 htseq_0.13.5-1.debian.tar.xz Checksums-Sha256: 2015aea9b682785e26bf8f2ec61be352843760b677c3f8c1c20022c58adac648 318076 htseq_0.13.5.orig.tar.gz f01e90928130e511da82bf34d5aad35615ed9da44b62963565cd0b7d21cfd305 11068 htseq_0.13.5-1.debian.tar.xz Files: cea1e447846a6474d5e515b1a3680903 318076 htseq_0.13.5.orig.tar.gz e6def32bb11e775a2150da72b0b5b7c3 11068 htseq_0.13.5-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmAFYkYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHYMA//SVx1+3O0GqKpwWvl3gtqyltDV9fzXvBa fQv2Xj92QqNsXVCwHMxbF6KBakLp4v+VLH63FNktWZOSTYWvsqvdH6zKzkao4HeN UbPx+1MWGPDVTP1E5qglnvGiLBIlEWKgtdVzO3MyQhsEGGa8tCe5vAn0Heid55uX qYyIiWXYMmyYPEqSSQb/tY67mXTQBLC2SmdaglKolGb/2KcSQl/JK/v3S1U9Wpox eQtenrumokaib3VPtTw6TIoj8PVUEIGiJv7NAamIUq4U1RchPhFM+32VuI817DqG 3m3DkBcta5u5k+BhXT0yBaXDWT1PU0tnBPPqDrZuDkHlI/aGJYBgpdhd/fNmEcs8 cc7kkvQ6r9UlBRSGA/7/IIyLj0de3ZLuUi4PGW1HHlX7qdnW9QXw+dmQw5KNg42Z qrvNSZUgzRDWk4PkiG4R0HhiRfCdsnEmol2xas+O6/HYsf4p5FgQZMevnOd3L8Hj UQZ/vDOEQRdpD543GyWyspkMwFHnr7BYgrgOaFzQXPgF5oVLRzTjzkoX8XkbWOMS d3vLWXgeOqeBaJTywQtv+unnlmz6VuMuoiZPFPLuNyzWTctoxnxQmoPB2tJZXya0 5iHLjSV1lVmp6Gu508jVP8PEBj7YHyTrOgopIuJPwJiJdgZNSHMpFnSUIcNU/YGG CxsDjPQg3zM= =hzXo -----END PGP SIGNATURE----- Tue Aug 10 11:52:50 UTC 2021 I: Checking whether the package is not for us Tue Aug 10 11:52:50 UTC 2021 I: Starting 1st build on remote node codethink10-arm64.debian.net. Tue Aug 10 11:52:50 UTC 2021 I: Preparing to do remote build '1' on codethink10-arm64.debian.net. Tue Aug 10 11:56:20 UTC 2021 I: Deleting $TMPDIR on codethink10-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Aug 9 23:52:56 -12 2021 I: pbuilder-time-stamp: 1628596376 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [htseq_0.13.5-1.dsc] I: copying [./htseq_0.13.5.orig.tar.gz] I: copying [./htseq_0.13.5-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.kqQD8k5s/trustedkeys.kbx': General error gpgv: Signature made Sun Jan 17 22:26:14 2021 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./htseq_0.13.5-1.dsc dpkg-source: info: extracting htseq in htseq-0.13.5 dpkg-source: info: unpacking htseq_0.13.5.orig.tar.gz dpkg-source: info: unpacking htseq_0.13.5-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/15035/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='15035' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.VWJLkDoiao/pbuilderrc_RoBK --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.VWJLkDoiao/b1 --logfile b1/build.log htseq_0.13.5-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink10-arm64 4.15.0-153-generic #160-Ubuntu SMP Thu Jul 29 07:06:07 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Aug 4 08:25 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Jul 28 07:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Jul 28 07:09 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Jul 28 07:09 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Jul 28 07:09 more -rwsr-xr-x 1 root root 51360 Jul 28 07:09 mount -rwxr-xr-x 1 root root 14496 Jul 28 07:09 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 8 23:21 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Jul 28 07:09 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 21:55 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30880 Jul 28 07:09 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Jul 28 07:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/15035/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: 2to3, debhelper-compat (= 13), dh-python, python3-debian, python3-setuptools, python3-all-dev, python3-numpy, python3-matplotlib, python3-pysam, swig, cython3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on 2to3; however: Package 2to3 is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-debian; however: Package python3-debian is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on swig; however: Package swig is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: 2to3{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcurl3-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfreetype6{a} libgfortran5{a} libhts3{a} libicu67{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblcms2-2{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmpdec3{a} libnghttp2-14{a} libpipeline1{a} libpng16-16{a} libpsl5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-chardet{a} python3-cycler{a} python3-dateutil{a} python3-debian{a} python3-dev{a} python3-distutils{a} python3-kiwisolver{a} python3-lib2to3{a} python3-matplotlib{a} python3-minimal{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-pyparsing{a} python3-pysam{a} python3-setuptools{a} python3-six{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} swig{a} swig4.0{a} ttf-bitstream-vera{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-apt python3-olefile python3-tk wget 0 packages upgraded, 111 newly installed, 0 to remove and 0 not upgraded. Need to get 54.0 MB of archives. After unpacking 201 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-8 [142 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-minimal arm64 3.9.2-1 [797 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 python3.9-minimal arm64 3.9.2-1 [1884 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 python3-minimal arm64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 mailcap all 3.69 [31.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 mime-support all 3.66 [10.9 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 libmpdec3 arm64 2.5.1-1 [84.4 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 readline-common all 8.1-1 [73.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 libreadline8 arm64 8.1-1 [160 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-stdlib arm64 3.9.2-1 [1658 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 python3.9 arm64 3.9.2-1 [466 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 libpython3-stdlib arm64 3.9.2-3 [21.4 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 python3 arm64 3.9.2-3 [37.9 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 2to3 all 3.9.2-3 [22.4 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 cython3 arm64 0.29.21-3+b1 [1239 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 python3-distutils all 3.9.2-1 [143 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 fonts-lyx all 2.3.6-1 [205 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 libblas3 arm64 3.9.0-3 [101 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libmd0 arm64 1.0.3-3 [27.9 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libbsd0 arm64 0.11.3-1 [106 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2.1 [69.3 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2.1 [105 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 libldap-2.4-2 arm64 2.4.57+dfsg-3 [222 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 libnghttp2-14 arm64 1.43.0-1 [73.8 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 libssh2-1 arm64 1.9.0-2 [150 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 libcurl3-gnutls arm64 7.74.0-1.3+b1 [318 kB] Get: 64 http://deb.debian.org/debian bullseye/main arm64 libdeflate0 arm64 1.7-1 [47.7 kB] Get: 65 http://deb.debian.org/debian bullseye/main arm64 libexpat1-dev arm64 2.2.10-2 [126 kB] Get: 66 http://deb.debian.org/debian bullseye/main arm64 libpng16-16 arm64 1.6.37-3 [289 kB] Get: 67 http://deb.debian.org/debian bullseye/main arm64 libfreetype6 arm64 2.10.4+dfsg-1 [393 kB] Get: 68 http://deb.debian.org/debian bullseye/main arm64 libgfortran5 arm64 10.2.1-6 [333 kB] Get: 69 http://deb.debian.org/debian bullseye/main arm64 libhts3 arm64 1.11-4 [346 kB] Get: 70 http://deb.debian.org/debian bullseye/main arm64 libimagequant0 arm64 2.12.2-1.1 [30.3 kB] Get: 71 http://deb.debian.org/debian bullseye/main arm64 libjbig0 arm64 2.1-3.1+b2 [27.8 kB] Get: 72 http://deb.debian.org/debian bullseye/main arm64 libjpeg62-turbo arm64 1:2.0.6-4 [133 kB] Get: 73 http://deb.debian.org/debian bullseye/main arm64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 74 http://deb.debian.org/debian bullseye/main arm64 libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB] Get: 75 http://deb.debian.org/debian bullseye/main arm64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 76 http://deb.debian.org/debian bullseye/main arm64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 77 http://deb.debian.org/debian bullseye/main arm64 liblapack3 arm64 3.9.0-3 [1541 kB] Get: 78 http://deb.debian.org/debian bullseye/main arm64 liblcms2-2 arm64 2.12~rc1-2 [140 kB] Get: 79 http://deb.debian.org/debian bullseye/main arm64 libpython3.9 arm64 3.9.2-1 [1556 kB] Get: 80 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-dev arm64 3.9.2-1 [3835 kB] Get: 81 http://deb.debian.org/debian bullseye/main arm64 libpython3-dev arm64 3.9.2-3 [21.7 kB] Get: 82 http://deb.debian.org/debian bullseye/main arm64 libpython3-all-dev arm64 3.9.2-3 [1068 B] Get: 83 http://deb.debian.org/debian bullseye/main arm64 libwebp6 arm64 0.6.1-2.1 [244 kB] Get: 84 http://deb.debian.org/debian bullseye/main arm64 libtiff5 arm64 4.2.0-1 [276 kB] Get: 85 http://deb.debian.org/debian bullseye/main arm64 libwebpdemux2 arm64 0.6.1-2.1 [87.5 kB] Get: 86 http://deb.debian.org/debian bullseye/main arm64 libwebpmux3 arm64 0.6.1-2.1 [96.7 kB] Get: 87 http://deb.debian.org/debian bullseye/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get: 88 http://deb.debian.org/debian bullseye/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 89 http://deb.debian.org/debian bullseye/main arm64 libxcb1 arm64 1.14-3 [138 kB] Get: 90 http://deb.debian.org/debian bullseye/main arm64 ttf-bitstream-vera all 1.10-8.1 [223 kB] Get: 91 http://deb.debian.org/debian bullseye/main arm64 python-matplotlib-data all 3.3.4-1 [4153 kB] Get: 92 http://deb.debian.org/debian bullseye/main arm64 python3-all arm64 3.9.2-3 [1056 B] Get: 93 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] Get: 94 http://deb.debian.org/debian bullseye/main arm64 python3.9-dev arm64 3.9.2-1 [515 kB] Get: 95 http://deb.debian.org/debian bullseye/main arm64 python3-dev arm64 3.9.2-3 [24.8 kB] Get: 96 http://deb.debian.org/debian bullseye/main arm64 python3-all-dev arm64 3.9.2-3 [1064 B] Get: 97 http://deb.debian.org/debian bullseye/main arm64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 98 http://deb.debian.org/debian bullseye/main arm64 python3-chardet all 4.0.0-1 [99.0 kB] Get: 99 http://deb.debian.org/debian bullseye/main arm64 python3-six all 1.16.0-2 [17.5 kB] Get: 100 http://deb.debian.org/debian bullseye/main arm64 python3-cycler all 0.10.0-3 [8084 B] Get: 101 http://deb.debian.org/debian bullseye/main arm64 python3-dateutil all 2.8.1-6 [79.2 kB] Get: 102 http://deb.debian.org/debian bullseye/main arm64 python3-debian all 0.1.39 [80.1 kB] Get: 103 http://deb.debian.org/debian bullseye/main arm64 python3-kiwisolver arm64 1.3.1-1+b1 [51.6 kB] Get: 104 http://deb.debian.org/debian bullseye/main arm64 python3-pyparsing all 2.4.7-1 [109 kB] Get: 105 http://deb.debian.org/debian bullseye/main arm64 python3-numpy arm64 1:1.19.5-1 [3196 kB] Get: 106 http://deb.debian.org/debian bullseye/main arm64 python3-pil arm64 8.1.2+dfsg-0.3 [428 kB] Get: 107 http://deb.debian.org/debian bullseye/main arm64 python3-matplotlib arm64 3.3.4-1 [4109 kB] Get: 108 http://deb.debian.org/debian bullseye/main arm64 python3-pysam arm64 0.15.4+ds-3+b2 [1386 kB] Get: 109 http://deb.debian.org/debian bullseye/main arm64 python3-setuptools all 52.0.0-4 [366 kB] Get: 110 http://deb.debian.org/debian bullseye/main arm64 swig4.0 arm64 4.0.2-1 [1295 kB] Get: 111 http://deb.debian.org/debian bullseye/main arm64 swig all 4.0.2-1 [330 kB] Fetched 54.0 MB in 1s (50.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8_arm64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../1-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../3-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libpython3.9-minimal:arm64. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_arm64.deb ... Unpacking libpython3.9-minimal:arm64 (3.9.2-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../6-libexpat1_2.2.10-2_arm64.deb ... Unpacking libexpat1:arm64 (2.2.10-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_arm64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:arm64 (3.9.2-1) ... Setting up libexpat1:arm64 (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20513 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_arm64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../2-mailcap_3.69_all.deb ... Unpacking mailcap (3.69) ... Selecting previously unselected package mime-support. Preparing to unpack .../3-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libmpdec3:arm64. Preparing to unpack .../4-libmpdec3_2.5.1-1_arm64.deb ... Unpacking libmpdec3:arm64 (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../6-libreadline8_8.1-1_arm64.deb ... Unpacking libreadline8:arm64 (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:arm64. Preparing to unpack .../7-libpython3.9-stdlib_3.9.2-1_arm64.deb ... Unpacking libpython3.9-stdlib:arm64 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../8-python3.9_3.9.2-1_arm64.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.9.2-3_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20958 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_arm64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../03-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.39-3_arm64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../06-python3-lib2to3_3.9.2-1_all.deb ... Unpacking python3-lib2to3 (3.9.2-1) ... Selecting previously unselected package 2to3. Preparing to unpack .../07-2to3_3.9.2-3_all.deb ... Unpacking 2to3 (3.9.2-3) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../08-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../09-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../10-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../11-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../12-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../13-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package cython3. Preparing to unpack .../14-cython3_0.29.21-3+b1_arm64.deb ... Unpacking cython3 (0.29.21-3+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../22-libelf1_0.183-1_arm64.deb ... Unpacking libelf1:arm64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.13+20210201-1_arm64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:arm64. Preparing to unpack .../24-libicu67_67.1-7_arm64.deb ... Unpacking libicu67:arm64 (67.1-7) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../25-libxml2_2.9.10+dfsg-6.7_arm64.deb ... Unpacking libxml2:arm64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-4_arm64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../30-python3-distutils_3.9.2-1_all.deb ... Unpacking python3-distutils (3.9.2-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../31-dh-python_4.20201102+nmu1_all.deb ... Unpacking dh-python (4.20201102+nmu1) ... Selecting previously unselected package fonts-lyx. Preparing to unpack .../32-fonts-lyx_2.3.6-1_all.deb ... Unpacking fonts-lyx (2.3.6-1) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../33-libblas3_3.9.0-3_arm64.deb ... Unpacking libblas3:arm64 (3.9.0-3) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../34-libbrotli1_1.0.9-2+b2_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b2) ... Selecting previously unselected package libmd0:arm64. Preparing to unpack .../35-libmd0_1.0.3-3_arm64.deb ... Unpacking libmd0:arm64 (1.0.3-3) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../36-libbsd0_0.11.3-1_arm64.deb ... Unpacking libbsd0:arm64 (0.11.3-1) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../37-libsasl2-modules-db_2.1.27+dfsg-2.1_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../38-libsasl2-2_2.1.27+dfsg-2.1_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:arm64. Preparing to unpack .../39-libldap-2.4-2_2.4.57+dfsg-3_arm64.deb ... Unpacking libldap-2.4-2:arm64 (2.4.57+dfsg-3) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../40-libnghttp2-14_1.43.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.43.0-1) ... Selecting previously unselected package libpsl5:arm64. Preparing to unpack .../41-libpsl5_0.21.0-1.2_arm64.deb ... Unpacking libpsl5:arm64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../42-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:arm64. Preparing to unpack .../43-libssh2-1_1.9.0-2_arm64.deb ... Unpacking libssh2-1:arm64 (1.9.0-2) ... Selecting previously unselected package libcurl3-gnutls:arm64. Preparing to unpack .../44-libcurl3-gnutls_7.74.0-1.3+b1_arm64.deb ... Unpacking libcurl3-gnutls:arm64 (7.74.0-1.3+b1) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../45-libdeflate0_1.7-1_arm64.deb ... Unpacking libdeflate0:arm64 (1.7-1) ... Selecting previously unselected package libexpat1-dev:arm64. Preparing to unpack .../46-libexpat1-dev_2.2.10-2_arm64.deb ... Unpacking libexpat1-dev:arm64 (2.2.10-2) ... Selecting previously unselected package libpng16-16:arm64. Preparing to unpack .../47-libpng16-16_1.6.37-3_arm64.deb ... Unpacking libpng16-16:arm64 (1.6.37-3) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../48-libfreetype6_2.10.4+dfsg-1_arm64.deb ... Unpacking libfreetype6:arm64 (2.10.4+dfsg-1) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../49-libgfortran5_10.2.1-6_arm64.deb ... Unpacking libgfortran5:arm64 (10.2.1-6) ... Selecting previously unselected package libhts3:arm64. Preparing to unpack .../50-libhts3_1.11-4_arm64.deb ... Unpacking libhts3:arm64 (1.11-4) ... Selecting previously unselected package libimagequant0:arm64. Preparing to unpack .../51-libimagequant0_2.12.2-1.1_arm64.deb ... Unpacking libimagequant0:arm64 (2.12.2-1.1) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../52-libjbig0_2.1-3.1+b2_arm64.deb ... Unpacking libjbig0:arm64 (2.1-3.1+b2) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../53-libjpeg62-turbo_1%3a2.0.6-4_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:2.0.6-4) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../54-libjs-jquery_3.5.1+dfsg+~3.5.5-7_all.deb ... Unpacking libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../55-libjs-jquery-ui_1.12.1+dfsg-8_all.deb ... Unpacking libjs-jquery-ui (1.12.1+dfsg-8) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../56-libjs-underscore_1.9.1~dfsg-3_all.deb ... Unpacking libjs-underscore (1.9.1~dfsg-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../57-libjs-sphinxdoc_3.4.3-2_all.deb ... Unpacking libjs-sphinxdoc (3.4.3-2) ... Selecting previously unselected package liblapack3:arm64. Preparing to unpack .../58-liblapack3_3.9.0-3_arm64.deb ... Unpacking liblapack3:arm64 (3.9.0-3) ... Selecting previously unselected package liblcms2-2:arm64. Preparing to unpack .../59-liblcms2-2_2.12~rc1-2_arm64.deb ... Unpacking liblcms2-2:arm64 (2.12~rc1-2) ... Selecting previously unselected package libpython3.9:arm64. Preparing to unpack .../60-libpython3.9_3.9.2-1_arm64.deb ... Unpacking libpython3.9:arm64 (3.9.2-1) ... Selecting previously unselected package libpython3.9-dev:arm64. Preparing to unpack .../61-libpython3.9-dev_3.9.2-1_arm64.deb ... Unpacking libpython3.9-dev:arm64 (3.9.2-1) ... Selecting previously unselected package libpython3-dev:arm64. Preparing to unpack .../62-libpython3-dev_3.9.2-3_arm64.deb ... Unpacking libpython3-dev:arm64 (3.9.2-3) ... Selecting previously unselected package libpython3-all-dev:arm64. Preparing to unpack .../63-libpython3-all-dev_3.9.2-3_arm64.deb ... Unpacking libpython3-all-dev:arm64 (3.9.2-3) ... Selecting previously unselected package libwebp6:arm64. Preparing to unpack .../64-libwebp6_0.6.1-2.1_arm64.deb ... Unpacking libwebp6:arm64 (0.6.1-2.1) ... Selecting previously unselected package libtiff5:arm64. Preparing to unpack .../65-libtiff5_4.2.0-1_arm64.deb ... Unpacking libtiff5:arm64 (4.2.0-1) ... Selecting previously unselected package libwebpdemux2:arm64. Preparing to unpack .../66-libwebpdemux2_0.6.1-2.1_arm64.deb ... Unpacking libwebpdemux2:arm64 (0.6.1-2.1) ... Selecting previously unselected package libwebpmux3:arm64. Preparing to unpack .../67-libwebpmux3_0.6.1-2.1_arm64.deb ... Unpacking libwebpmux3:arm64 (0.6.1-2.1) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../68-libxau6_1%3a1.0.9-1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.9-1) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../69-libxdmcp6_1%3a1.1.2-3_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../70-libxcb1_1.14-3_arm64.deb ... Unpacking libxcb1:arm64 (1.14-3) ... Selecting previously unselected package ttf-bitstream-vera. Preparing to unpack .../71-ttf-bitstream-vera_1.10-8.1_all.deb ... Unpacking ttf-bitstream-vera (1.10-8.1) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../72-python-matplotlib-data_3.3.4-1_all.deb ... Unpacking python-matplotlib-data (3.3.4-1) ... Selecting previously unselected package python3-all. Preparing to unpack .../73-python3-all_3.9.2-3_arm64.deb ... Unpacking python3-all (3.9.2-3) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../74-zlib1g-dev_1%3a1.2.11.dfsg-2_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.2.11.dfsg-2) ... Selecting previously unselected package python3.9-dev. Preparing to unpack .../75-python3.9-dev_3.9.2-1_arm64.deb ... Unpacking python3.9-dev (3.9.2-1) ... Selecting previously unselected package python3-dev. Preparing to unpack .../76-python3-dev_3.9.2-3_arm64.deb ... Unpacking python3-dev (3.9.2-3) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../77-python3-all-dev_3.9.2-3_arm64.deb ... Unpacking python3-all-dev (3.9.2-3) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../78-python3-pkg-resources_52.0.0-4_all.deb ... Unpacking python3-pkg-resources (52.0.0-4) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../79-python3-chardet_4.0.0-1_all.deb ... Unpacking python3-chardet (4.0.0-1) ... Selecting previously unselected package python3-six. Preparing to unpack .../80-python3-six_1.16.0-2_all.deb ... Unpacking python3-six (1.16.0-2) ... Selecting previously unselected package python3-cycler. Preparing to unpack .../81-python3-cycler_0.10.0-3_all.deb ... Unpacking python3-cycler (0.10.0-3) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../82-python3-dateutil_2.8.1-6_all.deb ... Unpacking python3-dateutil (2.8.1-6) ... Selecting previously unselected package python3-debian. Preparing to unpack .../83-python3-debian_0.1.39_all.deb ... Unpacking python3-debian (0.1.39) ... Selecting previously unselected package python3-kiwisolver. Preparing to unpack .../84-python3-kiwisolver_1.3.1-1+b1_arm64.deb ... Unpacking python3-kiwisolver (1.3.1-1+b1) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../85-python3-pyparsing_2.4.7-1_all.deb ... Unpacking python3-pyparsing (2.4.7-1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../86-python3-numpy_1%3a1.19.5-1_arm64.deb ... Unpacking python3-numpy (1:1.19.5-1) ... Selecting previously unselected package python3-pil:arm64. Preparing to unpack .../87-python3-pil_8.1.2+dfsg-0.3_arm64.deb ... Unpacking python3-pil:arm64 (8.1.2+dfsg-0.3) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../88-python3-matplotlib_3.3.4-1_arm64.deb ... Unpacking python3-matplotlib (3.3.4-1) ... Selecting previously unselected package python3-pysam. Preparing to unpack .../89-python3-pysam_0.15.4+ds-3+b2_arm64.deb ... Unpacking python3-pysam (0.15.4+ds-3+b2) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../90-python3-setuptools_52.0.0-4_all.deb ... Unpacking python3-setuptools (52.0.0-4) ... Selecting previously unselected package swig4.0. Preparing to unpack .../91-swig4.0_4.0.2-1_arm64.deb ... Unpacking swig4.0 (4.0.2-1) ... Selecting previously unselected package swig. Preparing to unpack .../92-swig_4.0.2-1_all.deb ... Unpacking swig (4.0.2-1) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:arm64 (1.5.3-1) ... Setting up liblcms2-2:arm64 (2.12~rc1-2) ... Setting up libxau6:arm64 (1:1.0.9-1) ... Setting up libpsl5:arm64 (0.21.0-1.2) ... Setting up ttf-bitstream-vera (1.10-8.1) ... Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:arm64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up fonts-lyx (2.3.6-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:arm64 (1.0.9-2+b2) ... Setting up libnghttp2-14:arm64 (1.43.0-1) ... Setting up libmagic1:arm64 (1:5.39-3) ... Setting up libdeflate0:arm64 (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libjbig0:arm64 (2.1-3.1+b2) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-2.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.2.10-2) ... Setting up libjpeg62-turbo:arm64 (1:2.0.6-4) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up libimagequant0:arm64 (2.12.2-1.1) ... Setting up libpng16-16:arm64 (1.6.37-3) ... Setting up autopoint (0.21-4) ... Setting up libwebp6:arm64 (0.6.1-2.1) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-2.1) ... Setting up libgfortran5:arm64 (10.2.1-6) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-2) ... Setting up libmd0:arm64 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libmpdec3:arm64 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:arm64 (1.9.0-2) ... Setting up libtiff5:arm64 (4.2.0-1) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up swig4.0 (4.0.2-1) ... Setting up python-matplotlib-data (3.3.4-1) ... Setting up libwebpmux3:arm64 (0.6.1-2.1) ... Setting up libbsd0:arm64 (0.11.3-1) ... Setting up mailcap (3.69) ... Setting up libelf1:arm64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.7) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up liblapack3:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up swig (4.0.2-1) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.6-15) ... Setting up libwebpdemux2:arm64 (0.6.1-2.1) ... Setting up libreadline8:arm64 (8.1-1) ... Setting up libldap-2.4-2:arm64 (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up libcurl3-gnutls:arm64 (7.74.0-1.3+b1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libjs-jquery-ui (1.12.1+dfsg-8) ... Setting up libfreetype6:arm64 (2.10.4+dfsg-1) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libpython3.9-stdlib:arm64 (3.9.2-1) ... Setting up libpython3-stdlib:arm64 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libhts3:arm64 (1.11-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libpython3.9:arm64 (3.9.2-1) ... Setting up python3.9 (3.9.2-1) ... Setting up libpython3.9-dev:arm64 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-six (1.16.0-2) ... Setting up python3-pil:arm64 (8.1.2+dfsg-0.3) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-cycler (0.10.0-3) ... Setting up python3-kiwisolver (1.3.1-1+b1) ... Setting up cython3 (0.29.21-3+b1) ... Setting up python3.9-dev (3.9.2-1) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-pysam (0.15.4+ds-3+b2) ... Setting up libpython3-dev:arm64 (3.9.2-3) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-all (3.9.2-3) ... Setting up 2to3 (3.9.2-3) ... Setting up python3-chardet (4.0.0-1) ... Setting up libpython3-all-dev:arm64 (3.9.2-3) ... Setting up python3-debian (0.1.39) ... Setting up python3-dev (3.9.2-3) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-all-dev (3.9.2-3) ... Setting up python3-matplotlib (3.3.4-1) ... Processing triggers for libc-bin (2.31-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/htseq-0.13.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../htseq_0.13.5-1_source.changes dpkg-buildpackage: info: source package htseq dpkg-buildpackage: info: source version 0.13.5-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/htseq-0.13.5' dh_auto_clean I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it # setup.py creates some symlinks in clean target # remove these links to keep source tree clean for link in 'src' 'HTSeq' 'doc' 'scripts' 'test' ; do \ if [ -L ${link} ] ; then rm ${link} ; fi \ done make[1]: Leaving directory '/build/htseq-0.13.5' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py running preprocess cythonizing Cython version 0.29.21 SWIGging correcting SWIG for python3 RefactoringTool: Skipping optional fixer: buffer RefactoringTool: Skipping optional fixer: idioms RefactoringTool: Skipping optional fixer: set_literal RefactoringTool: Skipping optional fixer: ws_comma RefactoringTool: Refactored src/StepVector.py RefactoringTool: Files that were modified: RefactoringTool: src/StepVector.py moving swigged .py module done creating /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq copying HTSeq/__init__.py -> /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq copying HTSeq/_HTSeq_internal.py -> /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq copying HTSeq/StepVector.py -> /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq copying HTSeq/_version.py -> /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq creating /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts copying HTSeq/scripts/__init__.py -> /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts copying HTSeq/scripts/qa.py -> /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts copying HTSeq/scripts/count.py -> /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts copying HTSeq/scripts/count_with_barcodes.py -> /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts copying HTSeq/utils.py -> /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq copying HTSeq/features.py -> /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq running build_ext building 'HTSeq._HTSeq' extension creating build creating build/temp.linux-arm64-3.9 creating build/temp.linux-arm64-3.9/src aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/htseq-0.13.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c src/_HTSeq.c -o build/temp.linux-arm64-3.9/src/_HTSeq.o -w aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/htseq-0.13.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.9/src/_HTSeq.o -o /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq/_HTSeq.cpython-39-aarch64-linux-gnu.so building 'HTSeq._StepVector' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/htseq-0.13.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c src/StepVector_wrap.cxx -o build/temp.linux-arm64-3.9/src/StepVector_wrap.o -w aarch64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/htseq-0.13.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.9/src/StepVector_wrap.o -o /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq/_StepVector.cpython-39-aarch64-linux-gnu.so running build_scripts creating build/scripts-3.9 copying and adjusting scripts/htseq-qa -> build/scripts-3.9 copying and adjusting scripts/htseq-count -> build/scripts-3.9 copying and adjusting scripts/htseq-count-barcodes -> build/scripts-3.9 changing mode of build/scripts-3.9/htseq-qa from 644 to 755 changing mode of build/scripts-3.9/htseq-count from 644 to 755 changing mode of build/scripts-3.9/htseq-count-barcodes from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:232: cd /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build; python3.9 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/htseq-0.13.5/debian/python3-htseq running install running build running build_py running preprocess cythonizing Cython version 0.29.21 SWIGging correcting SWIG for python3 RefactoringTool: Skipping optional fixer: buffer RefactoringTool: Skipping optional fixer: idioms RefactoringTool: Skipping optional fixer: set_literal RefactoringTool: Skipping optional fixer: ws_comma RefactoringTool: Refactored src/StepVector.py RefactoringTool: Files that were modified: RefactoringTool: src/StepVector.py moving swigged .py module done copying HTSeq/StepVector.py -> /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq copying HTSeq/_version.py -> /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq running build_ext building 'HTSeq._HTSeq' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/htseq-0.13.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c src/_HTSeq.c -o build/temp.linux-arm64-3.9/src/_HTSeq.o -w aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/htseq-0.13.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.9/src/_HTSeq.o -o /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq/_HTSeq.cpython-39-aarch64-linux-gnu.so building 'HTSeq._StepVector' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/htseq-0.13.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c src/StepVector_wrap.cxx -o build/temp.linux-arm64-3.9/src/StepVector_wrap.o -w aarch64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/htseq-0.13.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.9/src/StepVector_wrap.o -o /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq/_StepVector.cpython-39-aarch64-linux-gnu.so running build_scripts running install_lib creating /build/htseq-0.13.5/debian/python3-htseq/usr creating /build/htseq-0.13.5/debian/python3-htseq/usr/lib creating /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9 creating /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages creating /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq copying /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq/_StepVector.cpython-39-aarch64-linux-gnu.so -> /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq copying /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq/_HTSeq.cpython-39-aarch64-linux-gnu.so -> /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq copying /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq/_version.py -> /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq copying /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq/StepVector.py -> /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq creating /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__ copying /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq/__pycache__/features.cpython-39.pyc -> /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__ copying /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq/__pycache__/_version.cpython-39.pyc -> /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__ copying /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq/__pycache__/utils.cpython-39.pyc -> /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__ copying /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq/__pycache__/_HTSeq_internal.cpython-39.pyc -> /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__ copying /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq/__pycache__/StepVector.cpython-39.pyc -> /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__ copying /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq/__pycache__/__init__.cpython-39.pyc -> /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__ copying /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq/features.py -> /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq copying /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq/utils.py -> /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq creating /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts creating /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/__pycache__ copying /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/__pycache__/__init__.cpython-39.pyc -> /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/__pycache__ copying /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/count_with_barcodes.py -> /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts copying /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/count.py -> /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts copying /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/qa.py -> /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts copying /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/__init__.py -> /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts copying /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq/_HTSeq_internal.py -> /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq copying /build/htseq-0.13.5/.pybuild/cpython3_3.9_htseq/build/HTSeq/__init__.py -> /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq byte-compiling /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/_version.py to _version.cpython-39.pyc byte-compiling /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/StepVector.py to StepVector.cpython-39.pyc byte-compiling /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/features.py to features.cpython-39.pyc byte-compiling /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/utils.py to utils.cpython-39.pyc byte-compiling /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count_with_barcodes.py to count_with_barcodes.cpython-39.pyc byte-compiling /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count.py to count.cpython-39.pyc byte-compiling /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/qa.py to qa.cpython-39.pyc byte-compiling /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/__init__.py to __init__.cpython-39.pyc byte-compiling /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/_HTSeq_internal.py to _HTSeq_internal.cpython-39.pyc byte-compiling /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__init__.py to __init__.cpython-39.pyc running install_egg_info running egg_info writing HTSeq.egg-info/PKG-INFO writing dependency_links to HTSeq.egg-info/dependency_links.txt writing requirements to HTSeq.egg-info/requires.txt writing top-level names to HTSeq.egg-info/top_level.txt reading manifest file 'HTSeq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'todo.txt' writing manifest file 'HTSeq.egg-info/SOURCES.txt' Copying HTSeq.egg-info to /build/htseq-0.13.5/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq-0.13.5.egg-info Skipping SOURCES.txt running install_scripts creating /build/htseq-0.13.5/debian/python3-htseq/usr/bin copying build/scripts-3.9/htseq-count-barcodes -> /build/htseq-0.13.5/debian/python3-htseq/usr/bin copying build/scripts-3.9/htseq-count -> /build/htseq-0.13.5/debian/python3-htseq/usr/bin copying build/scripts-3.9/htseq-qa -> /build/htseq-0.13.5/debian/python3-htseq/usr/bin changing mode of /build/htseq-0.13.5/debian/python3-htseq/usr/bin/htseq-count-barcodes to 755 changing mode of /build/htseq-0.13.5/debian/python3-htseq/usr/bin/htseq-count to 755 changing mode of /build/htseq-0.13.5/debian/python3-htseq/usr/bin/htseq-qa to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz: debian/python3-htseq/usr/lib/python3/dist-packages/HTSeq/_HTSeq.cpython-39-aarch64-linux-gnu.so: DWARF compression not beneficial - old size 702948 new size 706023 dwz: debian/python3-htseq/usr/lib/python3/dist-packages/HTSeq/_StepVector.cpython-39-aarch64-linux-gnu.so: DWARF compression not beneficial - old size 406912 new size 407624 dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-htseq/usr/lib/python3/dist-packages/HTSeq/_StepVector.cpython-39-aarch64-linux-gnu.so was not linked against libpthread.so.0 (it uses none of the library's symbols) dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-htseq' in '../python3-htseq_0.13.5-1_arm64.deb'. dpkg-deb: building package 'python3-htseq-dbgsym' in '../python3-htseq-dbgsym_0.13.5-1_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../htseq_0.13.5-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/15035 and its subdirectories I: Current time: Mon Aug 9 23:56:19 -12 2021 I: pbuilder-time-stamp: 1628596579 Tue Aug 10 11:56:21 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink15-arm64.debian.net. Tue Aug 10 11:56:21 UTC 2021 I: Preparing to do remote build '2' on codethink15-arm64.debian.net. Tue Aug 10 12:00:56 UTC 2021 I: Deleting $TMPDIR on codethink15-arm64.debian.net. Tue Aug 10 12:00:57 UTC 2021 I: htseq_0.13.5-1_arm64.changes: Format: 1.8 Date: Mon, 18 Jan 2021 11:21:51 +0100 Source: htseq Binary: python3-htseq python3-htseq-dbgsym Architecture: arm64 Version: 0.13.5-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: python3-htseq - Python3 high-throughput genome sequencing read analysis utilities Changes: htseq (0.13.5-1) unstable; urgency=medium . [ Andreas Tille ] * New upstream version * Standards-Version: 4.5.1 (routine-update) . [ Juhani Numminen ] * Remove generated file src/Stepvector.py with debian/clean * Add Build-Depends 2to3 needed by setup.py * export CYTHON=cython3 so that setup.py can find the cython3 executable * Use autopkgtest-pkg-python to execute the same test that manually-written debian/tests/control did Checksums-Sha1: d5de6ac44385bec7222c5a15f401198603110920 7458 htseq_0.13.5-1_arm64.buildinfo bdb092a9bd16e88d919d39d464c79f6973a76aaf 1078012 python3-htseq-dbgsym_0.13.5-1_arm64.deb 6e8efc0ab0e38bb891bd4f1496e784fc68363257 202196 python3-htseq_0.13.5-1_arm64.deb Checksums-Sha256: d023c3deda0503ac5d2c9aaf1ec3b1370ddb03db9f8932ec3624e812a1a112ad 7458 htseq_0.13.5-1_arm64.buildinfo e11f72c6c4af82726587181505f53fb1242e783aba1fcad99ac5918ed03a06f6 1078012 python3-htseq-dbgsym_0.13.5-1_arm64.deb 0e897458ddb4004a9301d47fdfdb562f1588e3fc2017b24fbe111d64d4da9e5c 202196 python3-htseq_0.13.5-1_arm64.deb Files: 852aed49417493fb2bc955e56f856df7 7458 python optional htseq_0.13.5-1_arm64.buildinfo 323fae606f801564aefc59e92c957f5b 1078012 debug optional python3-htseq-dbgsym_0.13.5-1_arm64.deb 25ed5d311020a3e46d1e4bdff5be0554 202196 python optional python3-htseq_0.13.5-1_arm64.deb Tue Aug 10 12:00:59 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.VWJLkDoiao/htseq_0.13.5-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.VWJLkDoiao/htseq_0.13.5-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.VWJLkDoiao/htseq_0.13.5-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.VWJLkDoiao/b1/htseq_0.13.5-1_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.VWJLkDoiao/b2/htseq_0.13.5-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.817s) 0.817s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.078s) 0.077s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Tue Aug 10 12:01:02 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Tue Aug 10 12:01:02 UTC 2021 I: htseq from bullseye built successfully and reproducibly on arm64. Tue Aug 10 12:01:10 UTC 2021 I: Submitting .buildinfo files to external archives: Tue Aug 10 12:01:10 UTC 2021 I: Submitting 12K b1/htseq_0.13.5-1_arm64.buildinfo.asc Tue Aug 10 12:01:12 UTC 2021 I: Submitting 12K b2/htseq_0.13.5-1_arm64.buildinfo.asc Tue Aug 10 12:01:13 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Aug 10 12:01:13 UTC 2021 I: Done submitting .buildinfo files. Tue Aug 10 12:01:13 UTC 2021 I: Removing signed htseq_0.13.5-1_arm64.buildinfo.asc files: removed './b1/htseq_0.13.5-1_arm64.buildinfo.asc' removed './b2/htseq_0.13.5-1_arm64.buildinfo.asc'