Tue Jan 11 19:18:54 UTC 2022 I: starting to build trinityrnaseq/bullseye/amd64 on jenkins on '2022-01-11 19:18' Tue Jan 11 19:18:54 UTC 2022 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_31/49799/console.log Tue Jan 11 19:18:54 UTC 2022 I: Downloading source for bullseye/trinityrnaseq=2.11.0+dfsg-6 --2022-01-11 19:18:54-- http://cdn-fastly.deb.debian.org/debian/pool/main/t/trinityrnaseq/trinityrnaseq_2.11.0%2bdfsg-6.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2637 (2.6K) Saving to: ‘trinityrnaseq_2.11.0+dfsg-6.dsc’ 0K .. 100% 18.6M=0s 2022-01-11 19:18:54 (18.6 MB/s) - ‘trinityrnaseq_2.11.0+dfsg-6.dsc’ saved [2637/2637] Tue Jan 11 19:18:54 UTC 2022 I: trinityrnaseq_2.11.0+dfsg-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: trinityrnaseq Binary: trinityrnaseq, trinityrnaseq-examples Architecture: any all Version: 2.11.0+dfsg-6 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://trinityrnaseq.github.io/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/trinityrnaseq Vcs-Git: https://salsa.debian.org/med-team/trinityrnaseq.git Testsuite: autopkgtest Testsuite-Triggers: r-cran-tidyverse Build-Depends: debhelper-compat (= 13), jellyfish, libjung-free-java, javahelper, libgetopt-java, default-jdk, parafly, libjs-jquery, jaligner, libhts-dev, bowtie2, salmon, zlib1g-dev, cmake, r-bioc-edger, r-bioc-deseq2, r-bioc-rots, r-cran-fastcluster, liburi-perl, r-cran-ape, r-bioc-ctc, r-cran-gplots, r-cran-readr, r-bioc-biobase, r-bioc-qvalue, r-bioc-goseq, r-bioc-tximport, python3-htseq, rna-star, picard-tools, gmap, hisat2, subread, kallisto, python3-hisat2, r-cran-argparse, r-bioc-dexseq, tabix Package-List: trinityrnaseq deb science optional arch=any trinityrnaseq-examples deb science optional arch=all Checksums-Sha1: 833cd913ce9c7f864a6fa240268225cd1d6bd04e 258759712 trinityrnaseq_2.11.0+dfsg.orig.tar.xz 796978d36bc7980943fb58528e8ebe9bb607b2e4 152172 trinityrnaseq_2.11.0+dfsg-6.debian.tar.xz Checksums-Sha256: 78a9de6063044c5880196d706ad23e8db437795df26eb0b521e386a4146356d0 258759712 trinityrnaseq_2.11.0+dfsg.orig.tar.xz fc9140f1bc855eb64c37f0b7eff876ee86858a1ccd30b0325089289a8f9b49c9 152172 trinityrnaseq_2.11.0+dfsg-6.debian.tar.xz Files: a877bd080145ccb922f3906dcd5e9efc 258759712 trinityrnaseq_2.11.0+dfsg.orig.tar.xz 7180988fa4cbd3d8b9f85ac8a1b0c702 152172 trinityrnaseq_2.11.0+dfsg-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmAG3CUACgkQPCZ2P2xn 5uKW4w/9EiW6QBzumWI3yJ1n/sQFsFf04JGCQBIETTv3pIjngorf1X9bn4077Agh MzDG0o5sahv4HdknqPy6+5HjvEGrNEXmal+AK9csE+12KLKmwwq3lSYI+a9sgdj1 tdHLebB45rOCG5rVLFzWgZoSLFFg1fXHVI1cNurhGT+FnPpYVO8L9Kld97yqyQyL nURKx6BpqYBmkLh5I/CyoBHi/s39DqEd9WV2BSWte6k8oVKmqiU92x/glRVyZn/m 7qhPtMgzN+ARJbvrhLPofOKRD57uE/vucsyZwbqD58Xg/K1jOyAdjYYgoKGA/kiL ROowY1rVHZlqmNfHjhIEBY/3MxNf5u983qe1kSMR1S4eVG5x2GODS9Si2N1z32Ik Q6PmMECKUj7uXTJdFBeKZnADrPx9EGWdHvNvMMYcRPfGZ4ofXL2ep1JQvGsBIdl+ e2G2sOyPDlhO47fYiGyuCNhm8h5DdZ/v0i2NmWxYe2oDMKuODvi/zeaY11SJ9uWn EIo4f/na6AmJaowsrzZtb6mDncxHvcQyE+zKeDuZJMKHNpzip64Arbet+og2sF5f grKwZHtPeZCpELr5+3f0obVBplvVGkAmWxb1XA9qn+VyD7F7/JAG2c+Ng7bOejdY Sn8DcJhC8IHAxSRG62j7tVHob7iiufZyp1lJunZ9YJ3PA5OSyMI= =wLnH -----END PGP SIGNATURE----- Tue Jan 11 19:18:54 UTC 2022 I: Checking whether the package is not for us Tue Jan 11 19:18:54 UTC 2022 I: Starting 1st build on remote node ionos11-amd64.debian.net. Tue Jan 11 19:18:54 UTC 2022 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Tue Jan 11 20:06:37 UTC 2022 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jan 11 07:19:22 -12 2022 I: pbuilder-time-stamp: 1641928762 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [trinityrnaseq_2.11.0+dfsg-6.dsc] I: copying [./trinityrnaseq_2.11.0+dfsg.orig.tar.xz] I: copying [./trinityrnaseq_2.11.0+dfsg-6.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.7i03qiSi/trustedkeys.kbx': General error gpgv: Signature made Tue Jan 19 01:18:29 2021 -12 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./trinityrnaseq_2.11.0+dfsg-6.dsc dpkg-source: info: extracting trinityrnaseq in trinityrnaseq-2.11.0+dfsg dpkg-source: info: unpacking trinityrnaseq_2.11.0+dfsg.orig.tar.xz dpkg-source: info: unpacking trinityrnaseq_2.11.0+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying STAR_genomeSAindexNbases dpkg-source: info: applying butterfly dpkg-source: info: applying jellyfish-path dpkg-source: info: applying update-paths dpkg-source: info: applying collections15-to-4 dpkg-source: info: applying 0002-fix_istream_failure_call.patch dpkg-source: info: applying fix_system_paths dpkg-source: info: applying disable-version-check dpkg-source: info: applying adjust-trimmomatic-adapters-path dpkg-source: info: applying NeedlemanWunschGotohBanded.patch dpkg-source: info: applying python3 dpkg-source: info: applying unfix_num_of_cores dpkg-source: info: applying hardening dpkg-source: info: applying seqtk-trinity-hardening dpkg-source: info: applying skip_gatk_test dpkg-source: info: applying skip_tximportData_tests dpkg-source: info: applying submake dpkg-source: info: applying skip_blat dpkg-source: info: applying fix-gcc-10.patch dpkg-source: info: applying bamsifter_build dpkg-source: info: applying skip_DTU_STAR_test dpkg-source: info: applying strip_m64 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/30135/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='d44adf9d3c7d476c9efa33ef7585d414' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='30135' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.LFq8pEDwdJ/pbuilderrc_bV2Z --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.LFq8pEDwdJ/b1 --logfile b1/build.log trinityrnaseq_2.11.0+dfsg-6.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 5.10.0-10-amd64 #1 SMP Debian 5.10.84-1 (2021-12-08) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 4 08:25 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jul 28 07:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 28 07:09 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jul 28 07:09 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 28 07:09 more -rwsr-xr-x 1 root root 55528 Jul 28 07:09 mount -rwxr-xr-x 1 root root 18664 Jul 28 07:09 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jan 6 21:24 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jul 28 07:09 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 28 07:09 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 28 07:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/30135/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), jellyfish, libjung-free-java, javahelper, libgetopt-java, default-jdk, parafly, libjs-jquery, jaligner, libhts-dev, bowtie2, salmon, zlib1g-dev, cmake, r-bioc-edger, r-bioc-deseq2, r-bioc-rots, r-cran-fastcluster, liburi-perl, r-cran-ape, r-bioc-ctc, r-cran-gplots, r-cran-readr, r-bioc-biobase, r-bioc-qvalue, r-bioc-goseq, r-bioc-tximport, python3-htseq, rna-star, picard-tools, gmap, hisat2, subread, kallisto, python3-hisat2, r-cran-argparse, r-bioc-dexseq, tabix dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on jellyfish; however: Package jellyfish is not installed. pbuilder-satisfydepends-dummy depends on libjung-free-java; however: Package libjung-free-java is not installed. pbuilder-satisfydepends-dummy depends on javahelper; however: Package javahelper is not installed. pbuilder-satisfydepends-dummy depends on libgetopt-java; however: Package libgetopt-java is not installed. pbuilder-satisfydepends-dummy depends on default-jdk; however: Package default-jdk is not installed. pbuilder-satisfydepends-dummy depends on parafly; however: Package parafly is not installed. pbuilder-satisfydepends-dummy depends on libjs-jquery; however: Package libjs-jquery is not installed. pbuilder-satisfydepends-dummy depends on jaligner; however: Package jaligner is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on salmon; however: Package salmon is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-edger; however: Package r-bioc-edger is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-deseq2; however: Package r-bioc-deseq2 is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rots; however: Package r-bioc-rots is not installed. pbuilder-satisfydepends-dummy depends on r-cran-fastcluster; however: Package r-cran-fastcluster is not installed. pbuilder-satisfydepends-dummy depends on liburi-perl; however: Package liburi-perl is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ape; however: Package r-cran-ape is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-ctc; however: Package r-bioc-ctc is not installed. pbuilder-satisfydepends-dummy depends on r-cran-gplots; however: Package r-cran-gplots is not installed. pbuilder-satisfydepends-dummy depends on r-cran-readr; however: Package r-cran-readr is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biobase; however: Package r-bioc-biobase is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-qvalue; however: Package r-bioc-qvalue is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-goseq; however: Package r-bioc-goseq is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-tximport; however: Package r-bioc-tximport is not installed. pbuilder-satisfydepends-dummy depends on python3-htseq; however: Package python3-htseq is not installed. pbuilder-satisfydepends-dummy depends on rna-star; however: Package rna-star is not installed. pbuilder-satisfydepends-dummy depends on picard-tools; however: Package picard-tools is not installed. pbuilder-satisfydepends-dummy depends on gmap; however: Package gmap is not installed. pbuilder-satisfydepends-dummy depends on hisat2; however: Package hisat2 is not installed. pbuilder-satisfydepends-dummy depends on subread; however: Package subread is not installed. pbuilder-satisfydepends-dummy depends on kallisto; however: Package kallisto is not installed. pbuilder-satisfydepends-dummy depends on python3-hisat2; however: Package python3-hisat2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-argparse; however: Package r-cran-argparse is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-dexseq; however: Package r-bioc-dexseq is not installed. pbuilder-satisfydepends-dummy depends on tabix; however: Package tabix is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: ant{a} ant-optional{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bowtie2{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} cmake{a} cmake-data{a} dctrl-tools{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-font-awesome{a} fonts-lato{a} gettext{a} gettext-base{a} gmap{a} gnupg{a} gnupg-l10n{a} gnupg-utils{a} gpg{a} gpg-agent{a} gpg-wks-client{a} gpg-wks-server{a} gpgconf{a} gpgsm{a} groff-base{a} hisat2{a} intltool-debian{a} jaligner{a} java-common{a} javahelper{a} jellyfish{a} kallisto{a} libactivation-java{a} libaopalliance-java{a} libapache-pom-java{a} libarchive-zip-perl{a} libarchive13{a} libargs4j-java{a} libasound2{a} libasound2-data{a} libassuan0{a} libatinject-jsr330-api-java{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libb-hooks-op-check-perl{a} libbarclay-java{a} libblas3{a} libboost-dev{a} libboost-filesystem1.74.0{a} libboost-program-options1.74.0{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcdi-api-java{a} libclass-method-modifiers-perl{a} libcodemodel-java{a} libcolt-free-java{a} libcommons-cli-java{a} libcommons-codec-java{a} libcommons-collections4-java{a} libcommons-compress-java{a} libcommons-io-java{a} libcommons-jexl2-java{a} libcommons-lang3-java{a} libcommons-logging-java{a} libcommons-math3-java{a} libcommons-parent-java{a} libconcurrent-java{a} libcups2{a} libcurl3-gnutls{a} libcurl4{a} libcurl4-gnutls-dev{a} libdatrie1{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdom4j-java{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libdtd-parser-java{a} libdynaloader-functions-perl{a} libedit2{a} libelf1{a} libencode-locale-perl{a} libexpat1{a} libfastinfoset-java{a} libfile-dirlist-perl{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-touch-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreemarker-java{a} libfreetype6{a} libfribidi0{a} libgatk-native-bindings-java{a} libgeronimo-annotation-1.3-spec-java{a} libgeronimo-interceptor-3.0-spec-java{a} libgetopt-java{a} libgfortran5{a} libgif7{a} libgkl-java{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgoogle-gson-java{a} libgraphite2-3{a} libguava-java{a} libguice-java{a} libharfbuzz0b{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhts-dev{a} libhts3{a} libhtscodecs2{a} libhtsjdk-java{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libhttpclient-java{a} libhttpcore-java{a} libice6{a} libicu67{a} libimport-into-perl{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libistack-commons-java{a} libjaxb-api-java{a} libjaxb-java{a} libjaxen-java{a} libjbig0{a} libjellyfish-2.0-2{a} libjemalloc2{a} libjoptsimple-java{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp24{a} libjsoup-java{a} libjsr305-java{a} libjung-free-java{a} libksba8{a} liblapack3{a} liblcms2-2{a} libldap-2.4-2{a} liblightcouch-java{a} libllvm11{a} liblog4j2-java{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmaven-file-management-java{a} libmaven-parent-java{a} libmaven-resolver-java{a} libmaven-shared-io-java{a} libmaven-shared-utils-java{a} libmaven3-core-java{a} libmd0{a} libmodule-runtime-perl{a} libmongodb-java{a} libmoo-perl{a} libmpdec3{a} libncurses6{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnghttp2-14{a} libngs-java{a} libngs-sdk-dev{a} libngs-sdk2{a} libnpth0{a} libnspr4{a} libnss3{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libpciaccess0{a} libpcsclite1{a} libpicard-java{a} libpipeline1{a} libpixman-1-0{a} libplexus-archiver-java{a} libplexus-cipher-java{a} libplexus-classworlds-java{a} libplexus-component-annotations-java{a} libplexus-interpolation-java{a} libplexus-io-java{a} libplexus-sec-dispatcher-java{a} libplexus-utils2-java{a} libpng16-16{a} libprocps8{a} libpsl5{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} librelaxng-datatype-java{a} librhash0{a} librngom-java{a} librole-tiny-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsigsegv2{a} libsisu-inject-java{a} libsisu-plexus-java{a} libslf4j-java{a} libsm6{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libssh2-1{a} libstaden-read14{a} libstax-ex-java{a} libstreambuffer-java{a} libstrictures-perl{a} libsub-override-perl{a} libsub-quote-perl{a} libtbb2{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff5{a} libtimedate-perl{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libtxw2-java{a} libuchardet0{a} liburi-perl{a} libuv1{a} libvecmath-java{a} libvulkan1{a} libwagon-http-java{a} libwagon-provider-api-java{a} libwebp6{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxft2{a} libxi6{a} libxml-commons-resolver1.1-java{a} libxml2{a} libxrender1{a} libxshmfence1{a} libxsom-java{a} libxss1{a} libxt6{a} libxtst6{a} libxxf86vm1{a} libxz-java{a} libz3-4{a} littler{a} m4{a} man-db{a} media-types{a} netbase{a} node-html5shiv{a} openjdk-11-jdk{a} openjdk-11-jdk-headless{a} openjdk-11-jre{a} openjdk-11-jre-headless{a} openssl{a} parafly{a} patchutils{a} perl-openssl-defaults{a} picard-tools{a} pinentry-curses{a} po-debconf{a} procps{a} python3{a} python3-hisat2{a} python3-htseq{a} python3-minimal{a} python3-numpy{a} python3-pkg-resources{a} python3-pysam{a} python3.9{a} python3.9-minimal{a} r-base-core{a} r-bioc-annotate{a} r-bioc-annotationdbi{a} r-bioc-biobase{a} r-bioc-biocfilecache{a} r-bioc-biocgenerics{a} r-bioc-biocparallel{a} r-bioc-biomart{a} r-bioc-biostrings{a} r-bioc-ctc{a} r-bioc-delayedarray{a} r-bioc-deseq2{a} r-bioc-dexseq{a} r-bioc-edger{a} r-bioc-genefilter{a} r-bioc-genelendatabase{a} r-bioc-geneplotter{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-genomicalignments{a} r-bioc-genomicfeatures{a} r-bioc-genomicranges{a} r-bioc-go.db{a} r-bioc-goseq{a} r-bioc-iranges{a} r-bioc-limma{a} r-bioc-matrixgenerics{a} r-bioc-qvalue{a} r-bioc-rhtslib{a} r-bioc-rots{a} r-bioc-rsamtools{a} r-bioc-rtracklayer{a} r-bioc-s4vectors{a} r-bioc-summarizedexperiment{a} r-bioc-tximport{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-amap{a} r-cran-ape{a} r-cran-argparse{a} r-cran-askpass{a} r-cran-assertthat{a} r-cran-bh{a} r-cran-biasedurn{a} r-cran-bit{a} r-cran-bit64{a} r-cran-bitops{a} r-cran-blob{a} r-cran-brio{a} r-cran-cachem{a} r-cran-callr{a} r-cran-catools{a} r-cran-cli{a} r-cran-clipr{a} r-cran-colorspace{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-curl{a} r-cran-dbi{a} r-cran-dbplyr{a} r-cran-desc{a} r-cran-diffobj{a} r-cran-digest{a} r-cran-dplyr{a} r-cran-ellipsis{a} r-cran-evaluate{a} r-cran-fansi{a} r-cran-farver{a} r-cran-fastcluster{a} r-cran-fastmap{a} r-cran-findpython{a} r-cran-formatr{a} r-cran-futile.logger{a} r-cran-futile.options{a} r-cran-gdata{a} r-cran-generics{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gplots{a} r-cran-gtable{a} r-cran-gtools{a} r-cran-hms{a} r-cran-httr{a} r-cran-hwriter{a} r-cran-isoband{a} r-cran-jsonlite{a} r-cran-kernsmooth{a} r-cran-labeling{a} r-cran-lambda.r{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-locfit{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-memoise{a} r-cran-mgcv{a} r-cran-mime{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-openssl{a} r-cran-pillar{a} r-cran-pkgbuild{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-pkgload{a} r-cran-plogr{a} r-cran-plyr{a} r-cran-praise{a} r-cran-prettyunits{a} r-cran-processx{a} r-cran-progress{a} r-cran-ps{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcpparmadillo{a} r-cran-rcurl{a} r-cran-readr{a} r-cran-rematch2{a} r-cran-reshape2{a} r-cran-rlang{a} r-cran-rprojroot{a} r-cran-rsqlite{a} r-cran-rstudioapi{a} r-cran-scales{a} r-cran-snow{a} r-cran-statmod{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-survival{a} r-cran-sys{a} r-cran-testthat{a} r-cran-tibble{a} r-cran-tidyselect{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridislite{a} r-cran-waldo{a} r-cran-withr{a} r-cran-xml{a} r-cran-xml2{a} r-cran-xtable{a} readline-common{a} rna-star{a} salmon{a} sensible-utils{a} sphinx-rtd-theme-common{a} subread{a} tabix{a} ucf{a} unzip{a} wdiff{a} x11-common{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf bcftools curl dbus debian-keyring dput dput-ng dupload equivs fonts-dejavu-extra javascript-common libarchive-cpio-perl libatk-wrapper-java-jni libclass-xsaccessor-perl libclone-perl libdata-dump-perl libdistro-info-perl libfile-mimeinfo-perl libgit-wrapper-perl libgitlab-api-v4-perl libgkl-jni libglib2.0-data libgpm2 libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libjansi-java libldap-common liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libnamespace-clean-perl libnet-dbus-perl libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libsub-name-perl libx11-protocol-perl libxt-dev licensecheck lintian lynx mesa-vulkan-drivers pristine-tar psmisc publicsuffix python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg r-base-dev r-bioc-glmgampoi r-bioc-org.hs.eg.db r-bioc-shortread r-cran-abind r-cran-batchjobs r-cran-batchtools r-cran-class r-cran-cliapp r-cran-codetools r-cran-data.table r-cran-dbitest r-cran-decor r-cran-domc r-cran-doparallel r-cran-hexbin r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-knitr r-cran-lubridate r-cran-mapproj r-cran-mockery r-cran-mockr r-cran-quantreg r-cran-rmarkdown r-cran-rmpi r-cran-rmysql r-cran-rpostgresql r-cran-runit r-cran-sodium r-cran-sp r-cran-testit r-cran-tidyr r-cran-vdiffr r-cran-webutils r-doc-html r-recommended samtools shared-mime-info strace wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 497 newly installed, 0 to remove and 0 not upgraded. Need to get 726 MB of archives. After unpacking 1618 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 fonts-lato all 2.0-2.1 [2696 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 netbase all 6.3 [19.9 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2 [102 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 libprocps8 amd64 2:3.3.17-5 [63.9 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 procps amd64 2:3.3.17-5 [502 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1k-1+deb11u1 [851 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 ucf all 3.0043 [74.0 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 libnspr4 amd64 2:4.29-1 [112 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 libnss3 amd64 2:3.61-1+deb11u1 [1305 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 ca-certificates-java all 20190909 [15.7 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 java-common all 0.72 [14.5 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 libavahi-common-data amd64 0.8-5 [124 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libavahi-common3 amd64 0.8-5 [58.4 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 libdbus-1-3 amd64 1.12.20-2 [219 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libavahi-client3 amd64 0.8-5 [62.1 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libcups2 amd64 2.3.3op2-3+deb11u1 [350 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 liblcms2-2 amd64 2.12~rc1-2 [150 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1 [418 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 libasound2-data all 1.2.4-1.1 [38.2 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 libasound2 amd64 1.2.4-1.1 [356 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-0 amd64 2.66.8-1 [1370 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 libharfbuzz0b amd64 2.7.4-1 [1471 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libpcsclite1 amd64 1.9.1-1 [60.2 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 openjdk-11-jre-headless amd64 11.0.12+7-2 [37.3 MB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 default-jre-headless amd64 2:1.11-72 [10.9 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 ant all 1.10.9-4 [2118 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 ant-optional all 1.10.9-4 [381 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 62 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 63 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 64 http://deb.debian.org/debian bullseye/main amd64 libtbb2 amd64 2020.3-1 [161 kB] Get: 65 http://deb.debian.org/debian bullseye/main amd64 bowtie2 amd64 2.4.2-2+b3 [1342 kB] Get: 66 http://deb.debian.org/debian bullseye/main amd64 cmake-data all 3.18.4-2+deb11u1 [1725 kB] Get: 67 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 68 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 69 http://deb.debian.org/debian bullseye/main amd64 libarchive13 amd64 3.4.3-2+b1 [343 kB] Get: 70 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1 [69.1 kB] Get: 71 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1 [106 kB] Get: 72 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3 [232 kB] Get: 73 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get: 74 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get: 75 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 76 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get: 77 http://deb.debian.org/debian bullseye/main amd64 libcurl4 amd64 7.74.0-1.3+deb11u1 [341 kB] Get: 78 http://deb.debian.org/debian bullseye/main amd64 libjsoncpp24 amd64 1.9.4-4 [78.9 kB] Get: 79 http://deb.debian.org/debian bullseye/main amd64 librhash0 amd64 1.4.1-2 [129 kB] Get: 80 http://deb.debian.org/debian bullseye/main amd64 libuv1 amd64 1.40.0-2 [132 kB] Get: 81 http://deb.debian.org/debian bullseye/main amd64 cmake amd64 3.18.4-2+deb11u1 [5593 kB] Get: 82 http://deb.debian.org/debian bullseye/main amd64 dctrl-tools amd64 2.24-3+b1 [104 kB] Get: 83 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 84 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 85 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 86 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 87 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 88 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 89 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 90 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 91 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 92 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 93 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 94 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 95 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 96 http://deb.debian.org/debian bullseye/main amd64 libglvnd0 amd64 1.3.2-1 [53.6 kB] Get: 97 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 98 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get: 99 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1 [108 kB] Get: 100 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 101 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get: 102 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1 [311 kB] Get: 103 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1 [772 kB] Get: 104 http://deb.debian.org/debian bullseye/main amd64 libdrm-common all 2.4.104-1 [14.9 kB] Get: 105 http://deb.debian.org/debian bullseye/main amd64 libdrm2 amd64 2.4.104-1 [41.5 kB] Get: 106 http://deb.debian.org/debian bullseye/main amd64 libglapi-mesa amd64 20.3.5-1 [71.7 kB] Get: 107 http://deb.debian.org/debian bullseye/main amd64 libx11-xcb1 amd64 2:1.7.2-1 [203 kB] Get: 108 http://deb.debian.org/debian bullseye/main amd64 libxcb-dri2-0 amd64 1.14-3 [103 kB] Get: 109 http://deb.debian.org/debian bullseye/main amd64 libxcb-dri3-0 amd64 1.14-3 [102 kB] Get: 110 http://deb.debian.org/debian bullseye/main amd64 libxcb-glx0 amd64 1.14-3 [118 kB] Get: 111 http://deb.debian.org/debian bullseye/main amd64 libxcb-present0 amd64 1.14-3 [101 kB] Get: 112 http://deb.debian.org/debian bullseye/main amd64 libxcb-shm0 amd64 1.14-3 [101 kB] Get: 113 http://deb.debian.org/debian bullseye/main amd64 libxcb-sync1 amd64 1.14-3 [105 kB] Get: 114 http://deb.debian.org/debian bullseye/main amd64 libxcb-xfixes0 amd64 1.14-3 [105 kB] Get: 115 http://deb.debian.org/debian bullseye/main amd64 libxdamage1 amd64 1:1.1.5-2 [15.7 kB] Get: 116 http://deb.debian.org/debian bullseye/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get: 117 http://deb.debian.org/debian bullseye/main amd64 libxfixes3 amd64 1:5.0.3-2 [22.1 kB] Get: 118 http://deb.debian.org/debian bullseye/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get: 119 http://deb.debian.org/debian bullseye/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get: 120 http://deb.debian.org/debian bullseye/main amd64 libdrm-amdgpu1 amd64 2.4.104-1 [28.5 kB] Get: 121 http://deb.debian.org/debian bullseye/main amd64 libpciaccess0 amd64 0.16-1 [53.6 kB] Get: 122 http://deb.debian.org/debian bullseye/main amd64 libdrm-intel1 amd64 2.4.104-1 [71.8 kB] Get: 123 http://deb.debian.org/debian bullseye/main amd64 libdrm-nouveau2 amd64 2.4.104-1 [26.8 kB] Get: 124 http://deb.debian.org/debian bullseye/main amd64 libdrm-radeon1 amd64 2.4.104-1 [30.2 kB] Get: 125 http://deb.debian.org/debian bullseye/main amd64 libedit2 amd64 3.1-20191231-2+b1 [96.7 kB] Get: 126 http://deb.debian.org/debian bullseye/main amd64 libz3-4 amd64 4.8.10-1 [6949 kB] Get: 127 http://deb.debian.org/debian bullseye/main amd64 libllvm11 amd64 1:11.0.1-2 [17.9 MB] Get: 128 http://deb.debian.org/debian bullseye/main amd64 libsensors-config all 1:3.6.0-7 [32.3 kB] Get: 129 http://deb.debian.org/debian bullseye/main amd64 libsensors5 amd64 1:3.6.0-7 [52.3 kB] Get: 130 http://deb.debian.org/debian bullseye/main amd64 libvulkan1 amd64 1.2.162.0-1 [103 kB] Get: 131 http://deb.debian.org/debian bullseye/main amd64 libgl1-mesa-dri amd64 20.3.5-1 [9633 kB] Get: 132 http://deb.debian.org/debian bullseye/main amd64 libglx-mesa0 amd64 20.3.5-1 [186 kB] Get: 133 http://deb.debian.org/debian bullseye/main amd64 libglx0 amd64 1.3.2-1 [35.7 kB] Get: 134 http://deb.debian.org/debian bullseye/main amd64 libgl1 amd64 1.3.2-1 [89.5 kB] Get: 135 http://deb.debian.org/debian bullseye/main amd64 libgif7 amd64 5.1.9-2 [45.1 kB] Get: 136 http://deb.debian.org/debian bullseye/main amd64 libxi6 amd64 2:1.7.10-1 [83.4 kB] Get: 137 http://deb.debian.org/debian bullseye/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get: 138 http://deb.debian.org/debian bullseye/main amd64 x11-common all 1:7.7+22 [252 kB] Get: 139 http://deb.debian.org/debian bullseye/main amd64 libxtst6 amd64 2:1.2.3-1 [27.8 kB] Get: 140 http://deb.debian.org/debian bullseye/main amd64 openjdk-11-jre amd64 11.0.12+7-2 [176 kB] Get: 141 http://deb.debian.org/debian bullseye/main amd64 default-jre amd64 2:1.11-72 [1044 B] Get: 142 http://deb.debian.org/debian bullseye/main amd64 openjdk-11-jdk-headless amd64 11.0.12+7-2 [217 MB] Get: 143 http://deb.debian.org/debian bullseye/main amd64 default-jdk-headless amd64 2:1.11-72 [1100 B] Get: 144 http://deb.debian.org/debian bullseye/main amd64 openjdk-11-jdk amd64 11.0.12+7-2 [7101 kB] Get: 145 http://deb.debian.org/debian bullseye/main amd64 default-jdk amd64 2:1.11-72 [1056 B] Get: 146 http://deb.debian.org/debian bullseye/main amd64 libassuan0 amd64 2.5.3-7.1 [50.5 kB] Get: 147 http://deb.debian.org/debian bullseye/main amd64 gpgconf amd64 2.2.27-2 [547 kB] Get: 148 http://deb.debian.org/debian bullseye/main amd64 libksba8 amd64 1.5.0-3 [123 kB] Get: 149 http://deb.debian.org/debian bullseye/main amd64 libnpth0 amd64 1.6-3 [19.0 kB] Get: 150 http://deb.debian.org/debian bullseye/main amd64 dirmngr amd64 2.2.27-2 [762 kB] Get: 151 http://deb.debian.org/debian bullseye/main amd64 gnupg-l10n all 2.2.27-2 [1084 kB] Get: 152 http://deb.debian.org/debian bullseye/main amd64 gnupg-utils amd64 2.2.27-2 [905 kB] Get: 153 http://deb.debian.org/debian bullseye/main amd64 gpg amd64 2.2.27-2 [927 kB] Get: 154 http://deb.debian.org/debian bullseye/main amd64 pinentry-curses amd64 1.1.0-4 [64.9 kB] Get: 155 http://deb.debian.org/debian bullseye/main amd64 gpg-agent amd64 2.2.27-2 [669 kB] Get: 156 http://deb.debian.org/debian bullseye/main amd64 gpg-wks-client amd64 2.2.27-2 [523 kB] Get: 157 http://deb.debian.org/debian bullseye/main amd64 gpg-wks-server amd64 2.2.27-2 [516 kB] Get: 158 http://deb.debian.org/debian bullseye/main amd64 gpgsm amd64 2.2.27-2 [645 kB] Get: 159 http://deb.debian.org/debian bullseye/main amd64 gnupg all 2.2.27-2 [825 kB] Get: 160 http://deb.debian.org/debian bullseye/main amd64 libfile-dirlist-perl all 0.05-2 [7444 B] Get: 161 http://deb.debian.org/debian bullseye/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get: 162 http://deb.debian.org/debian bullseye/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get: 163 http://deb.debian.org/debian bullseye/main amd64 libfile-touch-perl all 0.11-1 [9254 B] Get: 164 http://deb.debian.org/debian bullseye/main amd64 libio-pty-perl amd64 1:1.15-2 [37.0 kB] Get: 165 http://deb.debian.org/debian bullseye/main amd64 libipc-run-perl all 20200505.0-1 [102 kB] Get: 166 http://deb.debian.org/debian bullseye/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get: 167 http://deb.debian.org/debian bullseye/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b3 [11.3 kB] Get: 168 http://deb.debian.org/debian bullseye/main amd64 libdynaloader-functions-perl all 0.003-1.1 [12.7 kB] Get: 169 http://deb.debian.org/debian bullseye/main amd64 libdevel-callchecker-perl amd64 0.008-1+b2 [15.9 kB] Get: 170 http://deb.debian.org/debian bullseye/main amd64 libparams-classify-perl amd64 0.015-1+b3 [25.7 kB] Get: 171 http://deb.debian.org/debian bullseye/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get: 172 http://deb.debian.org/debian bullseye/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get: 173 http://deb.debian.org/debian bullseye/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get: 174 http://deb.debian.org/debian bullseye/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get: 175 http://deb.debian.org/debian bullseye/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get: 176 http://deb.debian.org/debian bullseye/main amd64 libmoo-perl all 2.004004-1 [59.9 kB] Get: 177 http://deb.debian.org/debian bullseye/main amd64 libencode-locale-perl all 1.05-1.1 [13.2 kB] Get: 178 http://deb.debian.org/debian bullseye/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 179 http://deb.debian.org/debian bullseye/main amd64 libhttp-date-perl all 6.05-1 [10.4 kB] Get: 180 http://deb.debian.org/debian bullseye/main amd64 libfile-listing-perl all 6.14-1 [12.4 kB] Get: 181 http://deb.debian.org/debian bullseye/main amd64 libhtml-tagset-perl all 3.20-4 [13.0 kB] Get: 182 http://deb.debian.org/debian bullseye/main amd64 liburi-perl all 5.08-1 [90.6 kB] Get: 183 http://deb.debian.org/debian bullseye/main amd64 libhtml-parser-perl amd64 3.75-1+b1 [105 kB] Get: 184 http://deb.debian.org/debian bullseye/main amd64 libhtml-tree-perl all 5.07-2 [213 kB] Get: 185 http://deb.debian.org/debian bullseye/main amd64 libio-html-perl all 1.004-2 [16.1 kB] Get: 186 http://deb.debian.org/debian bullseye/main amd64 liblwp-mediatypes-perl all 6.04-1 [19.9 kB] Get: 187 http://deb.debian.org/debian bullseye/main amd64 libhttp-message-perl all 6.28-1 [79.6 kB] Get: 188 http://deb.debian.org/debian bullseye/main amd64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get: 189 http://deb.debian.org/debian bullseye/main amd64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get: 190 http://deb.debian.org/debian bullseye/main amd64 perl-openssl-defaults amd64 5 [7360 B] Get: 191 http://deb.debian.org/debian bullseye/main amd64 libnet-ssleay-perl amd64 1.88-3+b1 [321 kB] Get: 192 http://deb.debian.org/debian bullseye/main amd64 libio-socket-ssl-perl all 2.069-1 [215 kB] Get: 193 http://deb.debian.org/debian bullseye/main amd64 libnet-http-perl all 6.20-1 [25.1 kB] Get: 194 http://deb.debian.org/debian bullseye/main amd64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get: 195 http://deb.debian.org/debian bullseye/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get: 196 http://deb.debian.org/debian bullseye/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 197 http://deb.debian.org/debian bullseye/main amd64 libwww-perl all 6.52-1 [192 kB] Get: 198 http://deb.debian.org/debian bullseye/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get: 199 http://deb.debian.org/debian bullseye/main amd64 wdiff amd64 1.2.2-2+b1 [122 kB] Get: 200 http://deb.debian.org/debian bullseye/main amd64 devscripts amd64 2.21.3+deb11u1 [1093 kB] Get: 201 http://deb.debian.org/debian bullseye/main amd64 fontconfig amd64 2.13.1-4.2 [417 kB] Get: 202 http://deb.debian.org/debian bullseye/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 203 http://deb.debian.org/debian bullseye/main amd64 gmap amd64 2021-02-22+ds-1 [11.6 MB] Get: 204 http://deb.debian.org/debian bullseye/main amd64 hisat2 amd64 2.2.1-2+b3 [3653 kB] Get: 205 http://deb.debian.org/debian bullseye/main amd64 jaligner all 1.0+dfsg-7 [136 kB] Get: 206 http://deb.debian.org/debian bullseye/main amd64 javahelper all 0.78 [97.2 kB] Get: 207 http://deb.debian.org/debian bullseye/main amd64 libcurl3-gnutls amd64 7.74.0-1.3+deb11u1 [338 kB] Get: 208 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get: 209 http://deb.debian.org/debian bullseye/main amd64 libhts3 amd64 1.11-4 [378 kB] Get: 210 http://deb.debian.org/debian bullseye/main amd64 libjellyfish-2.0-2 amd64 2.3.0-10 [65.1 kB] Get: 211 http://deb.debian.org/debian bullseye/main amd64 jellyfish amd64 2.3.0-10 [790 kB] Get: 212 http://deb.debian.org/debian bullseye/main amd64 kallisto amd64 0.46.2+dfsg-2 [242 kB] Get: 213 http://deb.debian.org/debian bullseye/main amd64 libactivation-java all 1.2.0-2 [84.7 kB] Get: 214 http://deb.debian.org/debian bullseye/main amd64 libaopalliance-java all 20070526-6 [9048 B] Get: 215 http://deb.debian.org/debian bullseye/main amd64 libapache-pom-java all 18-1 [4676 B] Get: 216 http://deb.debian.org/debian bullseye/main amd64 libargs4j-java all 2.33-1.1 [137 kB] Get: 217 http://deb.debian.org/debian bullseye/main amd64 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] Get: 218 http://deb.debian.org/debian bullseye/main amd64 libfreemarker-java all 2.3.23-11 [1221 kB] Get: 219 http://deb.debian.org/debian bullseye/main amd64 libjoptsimple-java all 5.0.4-4 [73.1 kB] Get: 220 http://deb.debian.org/debian bullseye/main amd64 libcommons-parent-java all 43-1 [10.8 kB] Get: 221 http://deb.debian.org/debian bullseye/main amd64 libcommons-logging-java all 1.2-2 [62.2 kB] Get: 222 http://deb.debian.org/debian bullseye/main amd64 libgoogle-gson-java all 2.8.6-1 [225 kB] Get: 223 http://deb.debian.org/debian bullseye/main amd64 libcommons-codec-java all 1.15-1 [292 kB] Get: 224 http://deb.debian.org/debian bullseye/main amd64 libhttpcore-java all 4.4.14-1 [631 kB] Get: 225 http://deb.debian.org/debian bullseye/main amd64 libhttpclient-java all 4.5.13-2 [1233 kB] Get: 226 http://deb.debian.org/debian bullseye/main amd64 liblightcouch-java all 0.0.6-1.1 [65.2 kB] Get: 227 http://deb.debian.org/debian bullseye/main amd64 libmongodb-java all 3.6.3-2 [1901 kB] Get: 228 http://deb.debian.org/debian bullseye/main amd64 libslf4j-java all 1.7.30-1 [144 kB] Get: 229 http://deb.debian.org/debian bullseye/main amd64 liblog4j2-java all 2.16.0-1~deb11u1 [2079 kB] Get: 230 http://deb.debian.org/debian bullseye/main amd64 libbarclay-java all 2.1.0-3.1 [116 kB] Get: 231 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3 [153 kB] Get: 232 http://deb.debian.org/debian bullseye/main amd64 libboost1.74-dev amd64 1.74.0-9 [9534 kB] Get: 233 http://deb.debian.org/debian bullseye/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get: 234 http://deb.debian.org/debian bullseye/main amd64 libboost-filesystem1.74.0 amd64 1.74.0-9 [283 kB] Get: 235 http://deb.debian.org/debian bullseye/main amd64 libboost-program-options1.74.0 amd64 1.74.0-9 [356 kB] Get: 236 http://deb.debian.org/debian bullseye/main amd64 libpixman-1-0 amd64 0.40.0-1 [543 kB] Get: 237 http://deb.debian.org/debian bullseye/main amd64 libxcb-render0 amd64 1.14-3 [111 kB] Get: 238 http://deb.debian.org/debian bullseye/main amd64 libcairo2 amd64 1.16.0-5 [694 kB] Get: 239 http://deb.debian.org/debian bullseye/main amd64 libgeronimo-interceptor-3.0-spec-java all 1.0.1-4 [8484 B] Get: 240 http://deb.debian.org/debian bullseye/main amd64 libcdi-api-java all 1.2-3 [54.3 kB] Get: 241 http://deb.debian.org/debian bullseye/main amd64 libjaxen-java all 1.1.6-4 [214 kB] Get: 242 http://deb.debian.org/debian bullseye/main amd64 libdom4j-java all 2.1.3-1 [310 kB] Get: 243 http://deb.debian.org/debian bullseye/main amd64 libcommons-io-java all 2.8.0-1 [279 kB] Get: 244 http://deb.debian.org/debian bullseye/main amd64 libmaven-shared-utils-java all 3.3.0-1 [149 kB] Get: 245 http://deb.debian.org/debian bullseye/main amd64 libcommons-cli-java all 1.4-2 [57.3 kB] Get: 246 http://deb.debian.org/debian bullseye/main amd64 libcommons-lang3-java all 3.11-1 [550 kB] Get: 247 http://deb.debian.org/debian bullseye/main amd64 libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.1 kB] Get: 248 http://deb.debian.org/debian bullseye/main amd64 libjsr305-java all 0.1~+svn49-11 [26.9 kB] Get: 249 http://deb.debian.org/debian bullseye/main amd64 libguava-java all 29.0-6 [2419 kB] Get: 250 http://deb.debian.org/debian bullseye/main amd64 libguice-java all 4.2.3-2 [1435 kB] Get: 251 http://deb.debian.org/debian bullseye/main amd64 libmaven-parent-java all 31-2 [5100 B] Get: 252 http://deb.debian.org/debian bullseye/main amd64 libplexus-utils2-java all 3.3.0-1 [250 kB] Get: 253 http://deb.debian.org/debian bullseye/main amd64 libwagon-provider-api-java all 3.3.4-1 [50.2 kB] Get: 254 http://deb.debian.org/debian bullseye/main amd64 libmaven-resolver-java all 1.4.2-3 [556 kB] Get: 255 http://deb.debian.org/debian bullseye/main amd64 libplexus-cipher-java all 1.8-2 [15.0 kB] Get: 256 http://deb.debian.org/debian bullseye/main amd64 libplexus-classworlds-java all 2.6.0-1 [49.4 kB] Get: 257 http://deb.debian.org/debian bullseye/main amd64 libplexus-component-annotations-java all 2.1.0-1 [7620 B] Get: 258 http://deb.debian.org/debian bullseye/main amd64 libplexus-interpolation-java all 1.26-1 [76.8 kB] Get: 259 http://deb.debian.org/debian bullseye/main amd64 libplexus-sec-dispatcher-java all 1.4-4 [28.1 kB] Get: 260 http://deb.debian.org/debian bullseye/main amd64 libsisu-inject-java all 0.3.4-2 [347 kB] Get: 261 http://deb.debian.org/debian bullseye/main amd64 libsisu-plexus-java all 0.3.4-3 [181 kB] Get: 262 http://deb.debian.org/debian bullseye/main amd64 libmaven3-core-java all 3.6.3-5 [1538 kB] Get: 263 http://deb.debian.org/debian bullseye/main amd64 libmaven-shared-io-java all 3.0.0-3 [33.3 kB] Get: 264 http://deb.debian.org/debian bullseye/main amd64 libmaven-file-management-java all 3.0.0-1 [35.1 kB] Get: 265 http://deb.debian.org/debian bullseye/main amd64 libcommons-compress-java all 1.20-1 [574 kB] Get: 266 http://deb.debian.org/debian bullseye/main amd64 libplexus-io-java all 3.2.0-1.1 [65.0 kB] Get: 267 http://deb.debian.org/debian bullseye/main amd64 libsnappy1v5 amd64 1.1.8-1 [17.9 kB] Get: 268 http://deb.debian.org/debian bullseye/main amd64 libsnappy-jni amd64 1.1.8.3-1 [7152 B] Get: 269 http://deb.debian.org/debian bullseye/main amd64 libsnappy-java all 1.1.8.3-1 [98.9 kB] Get: 270 http://deb.debian.org/debian bullseye/main amd64 libxz-java all 1.8-2 [141 kB] Get: 271 http://deb.debian.org/debian bullseye/main amd64 libplexus-archiver-java all 3.6.0-2 [171 kB] Get: 272 http://deb.debian.org/debian bullseye/main amd64 libjsoup-java all 1.10.2-2 [350 kB] Get: 273 http://deb.debian.org/debian bullseye/main amd64 libwagon-http-java all 3.3.4-1 [53.9 kB] Get: 274 http://deb.debian.org/debian bullseye/main amd64 libistack-commons-java all 3.0.6-5 [145 kB] Get: 275 http://deb.debian.org/debian bullseye/main amd64 libcodemodel-java all 2.6+jaxb2.3.0.1-10 [163 kB] Get: 276 http://deb.debian.org/debian bullseye/main amd64 libconcurrent-java all 1.3.4-4.1 [137 kB] Get: 277 http://deb.debian.org/debian bullseye/main amd64 libcolt-free-java all 1.2.0+dfsg-7 [434 kB] Get: 278 http://deb.debian.org/debian bullseye/main amd64 libcommons-collections4-java all 4.2-1 [662 kB] Get: 279 http://deb.debian.org/debian bullseye/main amd64 libcommons-jexl2-java all 2.1.1-5 [256 kB] Get: 280 http://deb.debian.org/debian bullseye/main amd64 libcommons-math3-java all 3.6.1-3 [2018 kB] Get: 281 http://deb.debian.org/debian bullseye/main amd64 libcurl4-gnutls-dev amd64 7.74.0-1.3+deb11u1 [429 kB] Get: 282 http://deb.debian.org/debian bullseye/main amd64 libdatrie1 amd64 0.2.13-1 [42.7 kB] Get: 283 http://deb.debian.org/debian bullseye/main amd64 libdeflate-dev amd64 1.7-1 [46.9 kB] Get: 284 http://deb.debian.org/debian bullseye/main amd64 libdtd-parser-java all 1.2-1 [64.9 kB] Get: 285 http://deb.debian.org/debian bullseye/main amd64 libjaxb-api-java all 2.3.1-1 [119 kB] Get: 286 http://deb.debian.org/debian bullseye/main amd64 libstax-ex-java all 1.7.8-3 [40.9 kB] Get: 287 http://deb.debian.org/debian bullseye/main amd64 libstreambuffer-java all 1.5.4-1.1 [74.0 kB] Get: 288 http://deb.debian.org/debian bullseye/main amd64 librelaxng-datatype-java all 1.0+ds1-3.1 [11.7 kB] Get: 289 http://deb.debian.org/debian bullseye/main amd64 libxsom-java all 2.3.0.1-10 [396 kB] Get: 290 http://deb.debian.org/debian bullseye/main amd64 libfastinfoset-java all 1.2.12-3 [343 kB] Get: 291 http://deb.debian.org/debian bullseye/main amd64 libfribidi0 amd64 1.0.8-2 [64.8 kB] Get: 292 http://deb.debian.org/debian bullseye/main amd64 libgatk-native-bindings-java all 1.0.0-2.1 [7344 B] Get: 293 http://deb.debian.org/debian bullseye/main amd64 libgetopt-java all 1.0.14+dfsg-6 [25.7 kB] Get: 294 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get: 295 http://deb.debian.org/debian bullseye/main amd64 libgkl-java all 0.8.7+dfsg-1 [998 kB] Get: 296 http://deb.debian.org/debian bullseye/main amd64 liblzma-dev amd64 5.2.5-2 [229 kB] Get: 297 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Get: 298 http://deb.debian.org/debian bullseye/main amd64 libhts-dev amd64 1.11-4 [3858 kB] Get: 299 http://deb.debian.org/debian bullseye/main amd64 libhtscodecs2 amd64 0.5-3 [50.6 kB] Get: 300 http://deb.debian.org/debian bullseye/main amd64 librngom-java all 2.3.0.1-10 [288 kB] Get: 301 http://deb.debian.org/debian bullseye/main amd64 libtxw2-java all 2.3.0.1-10 [134 kB] Get: 302 http://deb.debian.org/debian bullseye/main amd64 libxml-commons-resolver1.1-java all 1.2-11 [98.3 kB] Get: 303 http://deb.debian.org/debian bullseye/main amd64 libjaxb-java all 2.3.0.1-10 [1954 kB] Get: 304 http://deb.debian.org/debian bullseye/main amd64 libngs-sdk2 amd64 2.10.9-1 [59.2 kB] Get: 305 http://deb.debian.org/debian bullseye/main amd64 libngs-sdk-dev amd64 2.10.9-1 [104 kB] Get: 306 http://deb.debian.org/debian bullseye/main amd64 libngs-java amd64 2.10.9-1 [80.4 kB] Get: 307 http://deb.debian.org/debian bullseye/main amd64 libhtsjdk-java all 2.23.0+dfsg-2 [1607 kB] Get: 308 http://deb.debian.org/debian bullseye/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get: 309 http://deb.debian.org/debian bullseye/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get: 310 http://deb.debian.org/debian bullseye/main amd64 libjemalloc2 amd64 5.2.1-3 [248 kB] Get: 311 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 312 http://deb.debian.org/debian bullseye/main amd64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 313 http://deb.debian.org/debian bullseye/main amd64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 314 http://deb.debian.org/debian bullseye/main amd64 libvecmath-java all 1.5.2-7 [97.0 kB] Get: 315 http://deb.debian.org/debian bullseye/main amd64 libjung-free-java all 2.0.1+dfsg-1.1 [999 kB] Get: 316 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3 [2166 kB] Get: 317 http://deb.debian.org/debian bullseye/main amd64 libthai-data all 0.1.28-3 [170 kB] Get: 318 http://deb.debian.org/debian bullseye/main amd64 libthai0 amd64 0.1.28-3 [54.2 kB] Get: 319 http://deb.debian.org/debian bullseye/main amd64 libpango-1.0-0 amd64 1.46.2-3 [191 kB] Get: 320 http://deb.debian.org/debian bullseye/main amd64 libpangoft2-1.0-0 amd64 1.46.2-3 [62.2 kB] Get: 321 http://deb.debian.org/debian bullseye/main amd64 libpangocairo-1.0-0 amd64 1.46.2-3 [50.6 kB] Get: 322 http://deb.debian.org/debian bullseye/main amd64 libpaper1 amd64 1.1.28+b1 [21.6 kB] Get: 323 http://deb.debian.org/debian bullseye/main amd64 libpaper-utils amd64 1.1.28+b1 [18.3 kB] Get: 324 http://deb.debian.org/debian bullseye/main amd64 libpicard-java all 2.24.1+dfsg-1 [1617 kB] Get: 325 http://deb.debian.org/debian bullseye/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 326 http://deb.debian.org/debian bullseye/main amd64 libstaden-read14 amd64 1.14.13-4 [265 kB] Get: 327 http://deb.debian.org/debian bullseye/main amd64 libtcl8.6 amd64 8.6.11+dfsg-1 [1018 kB] Get: 328 http://deb.debian.org/debian bullseye/main amd64 libwebp6 amd64 0.6.1-2.1 [258 kB] Get: 329 http://deb.debian.org/debian bullseye/main amd64 libtiff5 amd64 4.2.0-1 [289 kB] Get: 330 http://deb.debian.org/debian bullseye/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get: 331 http://deb.debian.org/debian bullseye/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get: 332 http://deb.debian.org/debian bullseye/main amd64 libtk8.6 amd64 8.6.11-2 [780 kB] Get: 333 http://deb.debian.org/debian bullseye/main amd64 libxt6 amd64 1:1.2.0-1 [189 kB] Get: 334 http://deb.debian.org/debian bullseye/main amd64 zip amd64 3.0-12 [232 kB] Get: 335 http://deb.debian.org/debian bullseye/main amd64 unzip amd64 6.0-26 [171 kB] Get: 336 http://deb.debian.org/debian bullseye/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 337 http://deb.debian.org/debian bullseye/main amd64 r-base-core amd64 4.0.4-1 [25.1 MB] Get: 338 http://deb.debian.org/debian bullseye/main amd64 r-cran-littler amd64 0.3.12-1 [95.9 kB] Get: 339 http://deb.debian.org/debian bullseye/main amd64 littler all 0.3.12-1 [15.6 kB] Get: 340 http://deb.debian.org/debian bullseye/main amd64 node-html5shiv all 3.7.3+dfsg-3 [12.9 kB] Get: 341 http://deb.debian.org/debian bullseye/main amd64 parafly amd64 0.1.0-2 [17.1 kB] Get: 342 http://deb.debian.org/debian bullseye/main amd64 picard-tools all 2.24.1+dfsg-1 [313 kB] Get: 343 http://deb.debian.org/debian bullseye/main amd64 python3-hisat2 all 2.2.1-2 [14.2 kB] Get: 344 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 345 http://deb.debian.org/debian bullseye/main amd64 python3-numpy amd64 1:1.19.5-1 [2693 kB] Get: 346 http://deb.debian.org/debian bullseye/main amd64 python3-pysam amd64 0.15.4+ds-3+b2 [1536 kB] Get: 347 http://deb.debian.org/debian bullseye/main amd64 python3-htseq amd64 0.13.5-1 [221 kB] Get: 348 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biocgenerics all 0.36.0-1 [648 kB] Get: 349 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biobase amd64 2.50.0-1 [2229 kB] Get: 350 http://deb.debian.org/debian bullseye/main amd64 r-bioc-s4vectors amd64 0.28.1-1 [2027 kB] Get: 351 http://deb.debian.org/debian bullseye/main amd64 r-bioc-iranges amd64 2.24.1-1 [2202 kB] Get: 352 http://deb.debian.org/debian bullseye/main amd64 r-cran-dbi all 1.1.1-1 [619 kB] Get: 353 http://deb.debian.org/debian bullseye/main amd64 r-cran-bit amd64 4.0.4+dfsg-1 [422 kB] Get: 354 http://deb.debian.org/debian bullseye/main amd64 r-cran-bit64 amd64 4.0.5-1 [463 kB] Get: 355 http://deb.debian.org/debian bullseye/main amd64 r-cran-rlang amd64 0.4.10-1 [1176 kB] Get: 356 http://deb.debian.org/debian bullseye/main amd64 r-cran-ellipsis amd64 0.3.1-1 [31.7 kB] Get: 357 http://deb.debian.org/debian bullseye/main amd64 r-cran-digest amd64 0.6.27-1 [192 kB] Get: 358 http://deb.debian.org/debian bullseye/main amd64 r-cran-glue amd64 1.4.2-1 [138 kB] Get: 359 http://deb.debian.org/debian bullseye/main amd64 r-cran-vctrs amd64 0.3.6-1 [1107 kB] Get: 360 http://deb.debian.org/debian bullseye/main amd64 r-cran-blob all 1.2.1-2 [49.1 kB] Get: 361 http://deb.debian.org/debian bullseye/main amd64 r-cran-fastmap amd64 1.1.0-1 [64.7 kB] Get: 362 http://deb.debian.org/debian bullseye/main amd64 r-cran-cachem amd64 1.0.3-1 [61.4 kB] Get: 363 http://deb.debian.org/debian bullseye/main amd64 r-cran-memoise all 2.0.0-1 [52.9 kB] Get: 364 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 365 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgkitten all 0.2.1-1 [26.5 kB] Get: 366 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcpp amd64 1.0.6-1 [2035 kB] Get: 367 http://deb.debian.org/debian bullseye/main amd64 r-cran-bh all 1.74.0-1 [5196 B] Get: 368 http://deb.debian.org/debian bullseye/main amd64 r-cran-plogr all 0.2.0-3 [14.9 kB] Get: 369 http://deb.debian.org/debian bullseye/main amd64 r-cran-rsqlite amd64 2.2.3-1 [1035 kB] Get: 370 http://deb.debian.org/debian bullseye/main amd64 r-bioc-annotationdbi all 1.52.0-1 [4707 kB] Get: 371 http://deb.debian.org/debian bullseye/main amd64 r-cran-xml amd64 3.99-0.5-1 [1722 kB] Get: 372 http://deb.debian.org/debian bullseye/main amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get: 373 http://deb.debian.org/debian bullseye/main amd64 r-cran-curl amd64 4.3+dfsg-1+b1 [151 kB] Get: 374 http://deb.debian.org/debian bullseye/main amd64 r-cran-jsonlite amd64 1.7.2+dfsg-1 [447 kB] Get: 375 http://deb.debian.org/debian bullseye/main amd64 r-cran-mime amd64 0.9-1+b1 [35.5 kB] Get: 376 http://deb.debian.org/debian bullseye/main amd64 r-cran-sys amd64 3.4-1 [42.9 kB] Get: 377 http://deb.debian.org/debian bullseye/main amd64 r-cran-askpass amd64 1.1-2 [22.2 kB] Get: 378 http://deb.debian.org/debian bullseye/main amd64 r-cran-openssl amd64 1.4.3+dfsg-2 [376 kB] Get: 379 http://deb.debian.org/debian bullseye/main amd64 r-cran-r6 all 2.5.0-1 [104 kB] Get: 380 http://deb.debian.org/debian bullseye/main amd64 r-cran-httr all 1.4.2-1 [478 kB] Get: 381 http://deb.debian.org/debian bullseye/main amd64 r-bioc-annotate all 1.68.0+dfsg-1 [2103 kB] Get: 382 http://deb.debian.org/debian bullseye/main amd64 r-cran-assertthat all 0.2.1-2 [56.5 kB] Get: 383 http://deb.debian.org/debian bullseye/main amd64 r-cran-generics all 0.1.0-1 [73.5 kB] Get: 384 http://deb.debian.org/debian bullseye/main amd64 r-cran-lifecycle all 0.2.0-2 [93.2 kB] Get: 385 http://deb.debian.org/debian bullseye/main amd64 r-cran-magrittr amd64 2.0.1-1 [198 kB] Get: 386 http://deb.debian.org/debian bullseye/main amd64 r-cran-cli all 2.3.0-1 [480 kB] Get: 387 http://deb.debian.org/debian bullseye/main amd64 r-cran-crayon all 1.4.0-1 [143 kB] Get: 388 http://deb.debian.org/debian bullseye/main amd64 r-cran-fansi amd64 0.4.2-1 [345 kB] Get: 389 http://deb.debian.org/debian bullseye/main amd64 r-cran-utf8 amd64 1.1.4-2 [131 kB] Get: 390 http://deb.debian.org/debian bullseye/main amd64 r-cran-pillar all 1.4.7-1 [227 kB] Get: 391 http://deb.debian.org/debian bullseye/main amd64 r-cran-tibble amd64 3.0.6+dfsg-1 [416 kB] Get: 392 http://deb.debian.org/debian bullseye/main amd64 r-cran-purrr amd64 0.3.4-1+b1 [398 kB] Get: 393 http://deb.debian.org/debian bullseye/main amd64 r-cran-tidyselect amd64 1.1.0+dfsg-1 [192 kB] Get: 394 http://deb.debian.org/debian bullseye/main amd64 r-cran-dplyr amd64 1.0.4-1 [1143 kB] Get: 395 http://deb.debian.org/debian bullseye/main amd64 r-cran-withr all 2.4.1-1 [210 kB] Get: 396 http://deb.debian.org/debian bullseye/main amd64 r-cran-dbplyr all 2.1.0-1 [802 kB] Get: 397 http://deb.debian.org/debian bullseye/main amd64 r-cran-rappdirs amd64 0.3.3-1 [47.4 kB] Get: 398 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biocfilecache all 1.14.0+dfsg-1 [289 kB] Get: 399 http://deb.debian.org/debian bullseye/main amd64 r-cran-formatr all 1.7-2 [151 kB] Get: 400 http://deb.debian.org/debian bullseye/main amd64 r-cran-lambda.r all 1.2.4-2 [118 kB] Get: 401 http://deb.debian.org/debian bullseye/main amd64 r-cran-futile.options all 1.0.1-3 [20.0 kB] Get: 402 http://deb.debian.org/debian bullseye/main amd64 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get: 403 http://deb.debian.org/debian bullseye/main amd64 r-cran-snow all 1:0.4.3-2 [109 kB] Get: 404 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biocparallel amd64 1.24.1-1 [1143 kB] Get: 405 http://deb.debian.org/debian bullseye/main amd64 r-cran-hms all 1.0.0-1 [102 kB] Get: 406 http://deb.debian.org/debian bullseye/main amd64 r-cran-prettyunits all 1.1.1-2 [39.1 kB] Get: 407 http://deb.debian.org/debian bullseye/main amd64 r-cran-progress all 1.2.2-2 [88.9 kB] Get: 408 http://deb.debian.org/debian bullseye/main amd64 r-cran-stringi amd64 1.5.3-1 [729 kB] Get: 409 http://deb.debian.org/debian bullseye/main amd64 r-cran-stringr all 1.4.0-2 [199 kB] Get: 410 http://deb.debian.org/debian bullseye/main amd64 r-cran-xml2 amd64 1.3.2-1+b1 [270 kB] Get: 411 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biomart all 2.46.2+dfsg-1 [414 kB] Get: 412 http://deb.debian.org/debian bullseye/main amd64 r-bioc-zlibbioc all 1.36.0+dfsg-1 [8824 B] Get: 413 http://deb.debian.org/debian bullseye/main amd64 r-bioc-xvector amd64 0.30.0-1 [620 kB] Get: 414 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biostrings amd64 2.58.0-1 [14.2 MB] Get: 415 http://deb.debian.org/debian bullseye/main amd64 r-cran-amap amd64 0.8-18-2+b1 [297 kB] Get: 416 http://deb.debian.org/debian bullseye/main amd64 r-bioc-ctc all 1.64.0-1 [219 kB] Get: 417 http://deb.debian.org/debian bullseye/main amd64 r-cran-lattice amd64 0.20-41-1+b1 [1164 kB] Get: 418 http://deb.debian.org/debian bullseye/main amd64 r-cran-matrix amd64 1.3-2-1 [3604 kB] Get: 419 http://deb.debian.org/debian bullseye/main amd64 r-cran-matrixstats amd64 0.58.0-3 [664 kB] Get: 420 http://deb.debian.org/debian bullseye/main amd64 r-bioc-matrixgenerics all 1.2.1-4 [288 kB] Get: 421 http://deb.debian.org/debian bullseye/main amd64 r-bioc-delayedarray amd64 0.16.1+dfsg-1 [1798 kB] Get: 422 http://deb.debian.org/debian bullseye/main amd64 r-cran-bitops amd64 1.0-6-5 [23.6 kB] Get: 423 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcurl amd64 1.98-1.2-1+b1 [787 kB] Get: 424 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genomeinfodbdata all 1.2.4-1 [10.7 MB] Get: 425 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genomeinfodb all 1.26.2-2 [3905 kB] Get: 426 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genomicranges amd64 1.42.0+dfsg-1 [1856 kB] Get: 427 http://deb.debian.org/debian bullseye/main amd64 r-bioc-summarizedexperiment all 1.20.0+dfsg-1 [1955 kB] Get: 428 http://deb.debian.org/debian bullseye/main amd64 r-cran-survival amd64 3.2-7-1 [7631 kB] Get: 429 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genefilter amd64 1.72.1-1 [1154 kB] Get: 430 http://deb.debian.org/debian bullseye/main amd64 r-cran-locfit amd64 1.5-9.4-2+b1 [508 kB] Get: 431 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcolorbrewer all 1.1-2-3 [54.4 kB] Get: 432 http://deb.debian.org/debian bullseye/main amd64 r-bioc-geneplotter all 1.68.0-1 [1551 kB] Get: 433 http://deb.debian.org/debian bullseye/main amd64 r-cran-gtable all 0.3.0+dfsg-2 [163 kB] Get: 434 http://deb.debian.org/debian bullseye/main amd64 r-cran-brio amd64 1.1.1-1 [31.7 kB] Get: 435 http://deb.debian.org/debian bullseye/main amd64 r-cran-ps amd64 1.5.0-1 [277 kB] Get: 436 http://deb.debian.org/debian bullseye/main amd64 r-cran-processx amd64 3.4.5-1 [295 kB] Get: 437 http://deb.debian.org/debian bullseye/main amd64 r-cran-callr all 3.5.1-1 [386 kB] Get: 438 http://deb.debian.org/debian bullseye/main amd64 r-cran-rprojroot all 2.0.2-1 [114 kB] Get: 439 http://deb.debian.org/debian bullseye/main amd64 r-cran-desc all 1.2.0-3 [301 kB] Get: 440 http://deb.debian.org/debian bullseye/main amd64 r-cran-evaluate all 0.14-2 [81.1 kB] Get: 441 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgbuild all 1.2.0-1 [146 kB] Get: 442 http://deb.debian.org/debian bullseye/main amd64 r-cran-rstudioapi all 0.13-1 [262 kB] Get: 443 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgload amd64 1.1.0-1 [168 kB] Get: 444 http://deb.debian.org/debian bullseye/main amd64 r-cran-praise all 1.0.0-4 [20.1 kB] Get: 445 http://deb.debian.org/debian bullseye/main amd64 r-cran-diffobj amd64 0.3.2-1 [1069 kB] Get: 446 http://deb.debian.org/debian bullseye/main amd64 r-cran-rematch2 all 2.1.2-2 [46.3 kB] Get: 447 http://deb.debian.org/debian bullseye/main amd64 r-cran-waldo all 0.2.3-2 [79.3 kB] Get: 448 http://deb.debian.org/debian bullseye/main amd64 r-cran-testthat amd64 3.0.1-1 [1451 kB] Get: 449 http://deb.debian.org/debian bullseye/main amd64 r-cran-isoband amd64 0.2.3-2 [2085 kB] Get: 450 http://deb.debian.org/debian bullseye/main amd64 r-cran-mass amd64 7.3-53.1-1 [1115 kB] Get: 451 http://deb.debian.org/debian bullseye/main amd64 r-cran-nlme amd64 3.1.152-1 [2241 kB] Get: 452 http://deb.debian.org/debian bullseye/main amd64 r-cran-mgcv amd64 1.8-34-1 [2998 kB] Get: 453 http://deb.debian.org/debian bullseye/main amd64 r-cran-farver amd64 2.0.3-1+b1 [1393 kB] Get: 454 http://deb.debian.org/debian bullseye/main amd64 r-cran-labeling all 0.4.2-1 [62.7 kB] Get: 455 http://deb.debian.org/debian bullseye/main amd64 r-cran-colorspace amd64 2.0-0+dfsg-1 [1684 kB] Get: 456 http://deb.debian.org/debian bullseye/main amd64 r-cran-munsell all 0.5.0-2 [236 kB] Get: 457 http://deb.debian.org/debian bullseye/main amd64 r-cran-viridislite all 0.3.0-4 [59.2 kB] Get: 458 http://deb.debian.org/debian bullseye/main amd64 r-cran-scales all 1.1.1-1 [557 kB] Get: 459 http://deb.debian.org/debian bullseye/main amd64 r-cran-ggplot2 all 3.3.3+dfsg-1 [3158 kB] Get: 460 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcpparmadillo amd64 0.10.2.1.0-1 [1149 kB] Get: 461 http://deb.debian.org/debian bullseye/main amd64 r-bioc-deseq2 amd64 1.30.1+dfsg-1 [1296 kB] Get: 462 http://deb.debian.org/debian bullseye/main amd64 r-cran-hwriter all 1.3.2-4 [162 kB] Get: 463 http://deb.debian.org/debian bullseye/main amd64 r-bioc-rhtslib amd64 1.22.0+dfsg-1 [1024 kB] Get: 464 http://deb.debian.org/debian bullseye/main amd64 r-bioc-rsamtools amd64 2.6.0-1 [3659 kB] Get: 465 http://deb.debian.org/debian bullseye/main amd64 r-cran-statmod amd64 1.4.35-1 [255 kB] Get: 466 http://deb.debian.org/debian bullseye/main amd64 r-bioc-dexseq all 1.36.0+dfsg-1 [449 kB] Get: 467 http://deb.debian.org/debian bullseye/main amd64 r-bioc-limma amd64 3.46.0+dfsg-1 [1767 kB] Get: 468 http://deb.debian.org/debian bullseye/main amd64 r-bioc-edger amd64 3.32.1+dfsg-1 [1077 kB] Get: 469 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genomicalignments amd64 1.26.0-1 [2196 kB] Get: 470 http://deb.debian.org/debian bullseye/main amd64 r-bioc-rtracklayer amd64 1.50.0-1 [7467 kB] Get: 471 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genomicfeatures all 1.42.1+dfsg-1 [1834 kB] Get: 472 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genelendatabase all 1.26.0-1 [101 MB] Get: 473 http://deb.debian.org/debian bullseye/main amd64 r-bioc-go.db all 3.12.1-1 [12.9 MB] Get: 474 http://deb.debian.org/debian bullseye/main amd64 r-cran-biasedurn amd64 1.07-4 [300 kB] Get: 475 http://deb.debian.org/debian bullseye/main amd64 r-bioc-goseq all 1.42.0-1 [1735 kB] Get: 476 http://deb.debian.org/debian bullseye/main amd64 r-cran-plyr amd64 1.8.6-2 [830 kB] Get: 477 http://deb.debian.org/debian bullseye/main amd64 r-cran-reshape2 amd64 1.4.4-2 [114 kB] Get: 478 http://deb.debian.org/debian bullseye/main amd64 r-bioc-qvalue all 2.22.0-1 [2799 kB] Get: 479 http://deb.debian.org/debian bullseye/main amd64 r-bioc-rots amd64 1.18.0-1 [435 kB] Get: 480 http://deb.debian.org/debian bullseye/main amd64 r-bioc-tximport all 1.18.0+dfsg-1 [86.2 kB] Get: 481 http://deb.debian.org/debian bullseye/main amd64 r-cran-ape amd64 5.4-1-1 [2208 kB] Get: 482 http://deb.debian.org/debian bullseye/main amd64 r-cran-findpython all 1.0.7-1 [23.6 kB] Get: 483 http://deb.debian.org/debian bullseye/main amd64 r-cran-argparse all 2.0.3-1 [136 kB] Get: 484 http://deb.debian.org/debian bullseye/main amd64 r-cran-catools amd64 1.18.1-1 [204 kB] Get: 485 http://deb.debian.org/debian bullseye/main amd64 r-cran-clipr all 0.7.1-1 [50.7 kB] Get: 486 http://deb.debian.org/debian bullseye/main amd64 r-cran-cpp11 all 0.2.6-1 [144 kB] Get: 487 http://deb.debian.org/debian bullseye/main amd64 r-cran-fastcluster amd64 1.1.25-3+b5 [184 kB] Get: 488 http://deb.debian.org/debian bullseye/main amd64 r-cran-gtools amd64 3.8.2-1+b1 [329 kB] Get: 489 http://deb.debian.org/debian bullseye/main amd64 r-cran-gdata all 2.18.0-3 [1031 kB] Get: 490 http://deb.debian.org/debian bullseye/main amd64 r-cran-kernsmooth amd64 2.23-18-1 [91.1 kB] Get: 491 http://deb.debian.org/debian bullseye/main amd64 r-cran-gplots all 3.1.1-1 [607 kB] Get: 492 http://deb.debian.org/debian bullseye/main amd64 r-cran-readr amd64 1.4.0-1 [753 kB] Get: 493 http://deb.debian.org/debian bullseye/main amd64 rna-star amd64 2.7.8a+dfsg-2 [1279 kB] Get: 494 http://deb.debian.org/debian bullseye/main amd64 sphinx-rtd-theme-common all 0.5.1+dfsg-1 [995 kB] Get: 495 http://deb.debian.org/debian bullseye/main amd64 salmon amd64 1.4.0+ds1-1+b4 [2221 kB] Get: 496 http://deb.debian.org/debian bullseye/main amd64 subread amd64 2.0.1+dfsg-1 [667 kB] Get: 497 http://deb.debian.org/debian bullseye/main amd64 tabix amd64 1.11-4 [339 kB] Fetched 726 MB in 49s (14.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../1-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../3-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package fonts-lato. Preparing to unpack .../5-fonts-lato_2.0-2.1_all.deb ... Unpacking fonts-lato (2.0-2.1) ... Selecting previously unselected package libpython3.9-minimal:amd64. Preparing to unpack .../6-libpython3.9-minimal_3.9.2-1_amd64.deb ... Unpacking libpython3.9-minimal:amd64 (3.9.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../7-libexpat1_2.2.10-2_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../8-python3.9-minimal_3.9.2-1_amd64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:amd64 (3.9.2-1) ... Setting up libexpat1:amd64 (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20548 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_amd64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../2-libmpdec3_2.5.1-1_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../3-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../4-libreadline8_8.1-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:amd64. Preparing to unpack .../5-libpython3.9-stdlib_3.9.2-1_amd64.deb ... Unpacking libpython3.9-stdlib:amd64 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../6-python3.9_3.9.2-1_amd64.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../7-libpython3-stdlib_3.9.2-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20969 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_amd64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package netbase. Preparing to unpack .../001-netbase_6.3_all.deb ... Unpacking netbase (6.3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../002-libncurses6_6.2+20201114-2_amd64.deb ... Unpacking libncurses6:amd64 (6.2+20201114-2) ... Selecting previously unselected package libprocps8:amd64. Preparing to unpack .../003-libprocps8_2%3a3.3.17-5_amd64.deb ... Unpacking libprocps8:amd64 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../004-procps_2%3a3.3.17-5_amd64.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../005-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package openssl. Preparing to unpack .../006-openssl_1.1.1k-1+deb11u1_amd64.deb ... Unpacking openssl (1.1.1k-1+deb11u1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../007-ca-certificates_20210119_all.deb ... Unpacking ca-certificates (20210119) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../008-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../009-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../010-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../011-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package ucf. Preparing to unpack .../012-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libnspr4:amd64. Preparing to unpack .../013-libnspr4_2%3a4.29-1_amd64.deb ... Unpacking libnspr4:amd64 (2:4.29-1) ... Selecting previously unselected package libnss3:amd64. Preparing to unpack .../014-libnss3_2%3a3.61-1+deb11u1_amd64.deb ... Unpacking libnss3:amd64 (2:3.61-1+deb11u1) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../015-ca-certificates-java_20190909_all.deb ... Unpacking ca-certificates-java (20190909) ... Selecting previously unselected package java-common. Preparing to unpack .../016-java-common_0.72_all.deb ... Unpacking java-common (0.72) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../017-libavahi-common-data_0.8-5_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.8-5) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../018-libavahi-common3_0.8-5_amd64.deb ... Unpacking libavahi-common3:amd64 (0.8-5) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../019-libdbus-1-3_1.12.20-2_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.12.20-2) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../020-libavahi-client3_0.8-5_amd64.deb ... Unpacking libavahi-client3:amd64 (0.8-5) ... Selecting previously unselected package libcups2:amd64. Preparing to unpack .../021-libcups2_2.3.3op2-3+deb11u1_amd64.deb ... Unpacking libcups2:amd64 (2.3.3op2-3+deb11u1) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../022-liblcms2-2_2.12~rc1-2_amd64.deb ... Unpacking liblcms2-2:amd64 (2.12~rc1-2) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../023-libjpeg62-turbo_1%3a2.0.6-4_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.0.6-4) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../024-libbrotli1_1.0.9-2+b2_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b2) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../025-libpng16-16_1.6.37-3_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.37-3) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../026-libfreetype6_2.10.4+dfsg-1_amd64.deb ... Unpacking libfreetype6:amd64 (2.10.4+dfsg-1) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../027-fonts-dejavu-core_2.37-2_all.deb ... Unpacking fonts-dejavu-core (2.37-2) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../028-fontconfig-config_2.13.1-4.2_all.deb ... Unpacking fontconfig-config (2.13.1-4.2) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../029-libfontconfig1_2.13.1-4.2_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.1-4.2) ... Selecting previously unselected package libasound2-data. Preparing to unpack .../030-libasound2-data_1.2.4-1.1_all.deb ... 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Setting up x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.30-1) ... Setting up libsensors-config (1:3.6.0-7) ... Setting up node-html5shiv (3.7.3+dfsg-3) ... Setting up libnghttp2-14:amd64 (1.43.0-1) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up libngs-sdk2:amd64 (2.10.9-1) ... Setting up libdeflate0:amd64 (1.7-1) ... Setting up perl-openssl-defaults:amd64 (5) ... Setting up gettext-base (0.21-4) ... Setting up libboost-filesystem1.74.0:amd64 (1.74.0-9) ... Setting up libencode-locale-perl (1.05-1.1) ... Setting up libplexus-component-annotations-java (2.1.0-1) ... Setting up libnpth0:amd64 (1.6-3) ... Setting up file (1:5.39-3) ... Setting up libjemalloc2:amd64 (5.2.1-3) ... Setting up libassuan0:amd64 (2.5.3-7.1) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libplexus-cipher-java (1.8-2) ... Setting up libsnappy1v5:amd64 (1.1.8-1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1) ... Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... Setting up libgeronimo-interceptor-3.0-spec-java (1.0.1-4) ... Setting up libjellyfish-2.0-2:amd64 (2.3.0-10) ... Setting up libasound2-data (1.2.4-1.1) ... Setting up zip (3.0-12) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libz3-4:amd64 (4.8.10-1) ... Setting up libblas3:amd64 (3.9.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libuv1:amd64 (1.40.0-2) ... Setting up libjpeg62-turbo:amd64 (1:2.0.6-4) ... Setting up libjaxen-java (1.1.6-4) ... Setting up libx11-data (2:1.7.2-1) ... Setting up libnspr4:amd64 (2:4.29-1) ... Setting up gnupg-l10n (2.2.27-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libapache-pom-java (18-1) ... Setting up libavahi-common-data:amd64 (0.8-5) ... Setting up libncurses6:amd64 (6.2+20201114-2) ... Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... Setting up libdbus-1-3:amd64 (1.12.20-2) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up libfribidi0:amd64 (1.0.8-2) ... Setting up libplexus-interpolation-java (1.26-1) ... Setting up libpng16-16:amd64 (1.6.37-3) ... Setting up libxml-commons-resolver1.1-java (1.2-11) ... Setting up libxz-java (1.8-2) ... Setting up libio-html-perl (1.004-2) ... Setting up libtcl8.6:amd64 (8.6.11+dfsg-1) ... Setting up autopoint (0.21-4) ... Setting up libwebp6:amd64 (0.6.1-2.1) ... Setting up libb-hooks-op-check-perl (0.22-1+b3) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up libngs-sdk-dev:amd64 (2.10.9-1) ... Setting up libipc-run-perl (20200505.0-1) ... Setting up libpcsclite1:amd64 (1.9.1-1) ... Setting up libsensors5:amd64 (1:3.6.0-7) ... Setting up libmongodb-java (3.6.3-2) ... Setting up libactivation-java (1.2.0-2) ... Setting up libglapi-mesa:amd64 (20.3.5-1) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1) ... Setting up libgfortran5:amd64 (10.2.1-6) ... Setting up libvulkan1:amd64 (1.2.162.0-1) ... Setting up libjsoncpp24:amd64 (1.9.4-4) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liblzma-dev:amd64 (5.2.5-2) ... Setting up libgif7:amd64 (5.1.9-2) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up libmd0:amd64 (1.0.3-3) ... Setting up libfreemarker-java (2.3.23-11) ... Setting up sensible-utils (0.0.14) ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up libjsoup-java (1.10.2-2) ... Setting up subread (2.0.1+dfsg-1) ... Setting up librhash0:amd64 (1.4.1-2) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libasound2:amd64 (1.2.4-1.1) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libplexus-sec-dispatcher-java (1.4-4) ... Setting up libthai-data (0.1.28-3) ... Setting up libssh2-1:amd64 (1.9.0-2) ... Setting up netbase (6.3) ... Setting up libcommons-math3-java (3.6.1-3) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up cmake-data (3.18.4-2+deb11u1) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up libtiff5:amd64 (4.2.0-1) ... Setting up libhttpcore-java (4.4.14-1) ... Setting up libjoptsimple-java (5.0.4-4) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libngs-java:amd64 (2.10.9-1) ... Setting up libfile-dirlist-perl (0.05-2) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up librelaxng-datatype-java (1.0+ds1-3.1) ... Setting up openssl (1.1.1k-1+deb11u1) ... Setting up libbsd0:amd64 (0.11.3-1) ... Setting up libdeflate-dev:amd64 (1.7-1) ... Setting up tabix (1.11-4) ... Setting up libdrm-common (2.4.104-1) ... Setting up libcdi-api-java (1.2-3) ... Setting up libelf1:amd64 (0.183-1) ... Setting up libsnappy-jni (1.1.8.3-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (0.5.1+dfsg-1) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.08-1) ... Setting up libargs4j-java (2.33-1.1) ... Setting up libfile-touch-perl (0.11-1) ... Setting up gmap (2021-02-22+ds-1) ... Setting up libprocps8:amd64 (2:3.3.17-5) ... Setting up dctrl-tools (2.24-3+b1) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libnet-ssleay-perl (1.88-3+b1) ... Setting up pinentry-curses (1.1.0-4) ... Setting up libdom4j-java (2.1.3-1) ... Setting up libjaxb-api-java (2.3.1-1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up r-cran-bh (1.74.0-1) ... Setting up libwagon-provider-api-java (3.3.4-1) ... Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libhttp-date-perl (6.05-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.9.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up libxcb-xfixes0:amd64 (1.14-3) ... Setting up libfile-listing-perl (6.14-1) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:amd64 (3.4.3-2+b1) ... Setting up libxcb-render0:amd64 (1.14-3) ... Setting up libstax-ex-java (1.7.8-3) ... Setting up libxcb-glx0:amd64 (1.14-3) ... Setting up libmaven-parent-java (31-2) ... Setting up libedit2:amd64 (3.1-20191231-2+b1) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libcommons-parent-java (43-1) ... Setting up libavahi-common3:amd64 (0.8-5) ... Setting up libcommons-logging-java (1.2-2) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3) ... Setting up libnet-http-perl (6.20-1) ... Setting up m4 (1.4.18-5) ... Setting up libsisu-inject-java (0.3.4-2) ... Setting up libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u1) ... Setting up libnss3:amd64 (2:3.61-1+deb11u1) ... Setting up libxcb-shm0:amd64 (1.14-3) ... Setting up libcurl4-gnutls-dev:amd64 (7.74.0-1.3+deb11u1) ... Setting up libdevel-callchecker-perl (0.008-1+b2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxcb-present0:amd64 (1.14-3) ... Setting up patchutils (0.4.2-1) ... Setting up libcommons-jexl2-java (2.1.1-5) ... Setting up libthai0:amd64 (0.1.28-3) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libsisu-plexus-java (0.3.4-3) ... Setting up libmaven-resolver-java (1.4.2-3) ... Setting up libllvm11:amd64 (1:11.0.1-2) ... Setting up libfreetype6:amd64 (2.10.4+dfsg-1) ... Setting up libguava-java (29.0-6) ... Setting up libxcb-sync1:amd64 (1.14-3) ... Setting up libstreambuffer-java (1.5.4-1.1) ... Setting up libcommons-collections4-java (4.2-1) ... Setting up ucf (3.0043) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up libcommons-lang3-java (3.11-1) ... Setting up autoconf (2.69-14) ... Setting up libxcb-dri2-0:amd64 (1.14-3) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up librngom-java (2.3.0.1-10) ... Setting up libdrm2:amd64 (2.4.104-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libhtml-parser-perl (3.75-1+b1) ... Setting up procps (2:3.3.17-5) ... Setting up gpgconf (2.2.27-2) ... Setting up libcurl4:amd64 (7.74.0-1.3+deb11u1) ... Setting up libx11-6:amd64 (2:1.7.2-1) ... Setting up libharfbuzz0b:amd64 (2.7.4-1) ... Setting up libsnappy-java (1.1.8.3-1) ... Setting up libxsom-java (2.3.0.1-10) ... Setting up libstaden-read14:amd64 (1.14.13-4) ... Setting up libcommons-codec-java (1.15-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libavahi-client3:amd64 (0.8-5) ... Setting up libio-socket-ssl-perl (2.069-1) ... Setting up gpg (2.2.27-2) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up gnupg-utils (2.2.27-2) ... Setting up libhttp-message-perl (6.28-1) ... Setting up libdrm-amdgpu1:amd64 (2.4.104-1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:amd64 (1.14-3) ... Setting up libpaper1:amd64 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up libx11-xcb1:amd64 (2:1.7.2-1) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libhts3:amd64 (1.11-4) ... Setting up libdrm-nouveau2:amd64 (2.4.104-1) ... Setting up libxdamage1:amd64 (1:1.1.5-2) ... Setting up gpg-agent (2.2.27-2) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libcommons-compress-java (1.20-1) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libcommons-io-java (2.8.0-1) ... Setting up libdrm-radeon1:amd64 (2.4.104-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libparams-classify-perl (0.015-1+b3) ... Setting up gpgsm (2.2.27-2) ... Setting up libdrm-intel1:amd64 (2.4.104-1) ... Setting up libgl1-mesa-dri:amd64 (20.3.5-1) ... Setting up libxext6:amd64 (2:1.3.3-1.1) ... Setting up libhts-dev:amd64 (1.11-4) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up rna-star (2.7.8a+dfsg-2) ... Setting up libguice-java (4.2.3-2) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up salmon (1.4.0+ds1-1+b4) ... Setting up dh-autoreconf (20) ... Setting up dirmngr (2.2.27-2) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libxfixes3:amd64 (1:5.0.3-2) ... Setting up jellyfish (2.3.0-10) ... Setting up libxt6:amd64 (1:1.2.0-1) ... Setting up gpg-wks-server (2.2.27-2) ... Setting up libcups2:amd64 (2.3.3op2-3+deb11u1) ... Setting up libhttpclient-java (4.5.13-2) ... Setting up cmake (3.18.4-2+deb11u1) ... Setting up liblightcouch-java (0.0.6-1.1) ... Setting up libwagon-http-java (3.3.4-1) ... Setting up libmaven-shared-utils-java (3.3.0-1) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up libfastinfoset-java (1.2.12-3) ... Setting up kallisto (0.46.2+dfsg-2) ... Setting up python3.9 (3.9.2-1) ... Setting up fontconfig (2.13.1-4.2) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.2-2) ... Setting up libplexus-io-java (3.2.0-1.1) ... Setting up libglx-mesa0:amd64 (20.3.5-1) ... Setting up libxi6:amd64 (2:1.7.10-1) ... Setting up gpg-wks-client (2.2.27-2) ... Setting up libglx0:amd64 (1.3.2-1) ... Setting up libmaven3-core-java (3.6.3-5) ... Setting up libmaven-shared-io-java (3.0.0-3) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libxtst6:amd64 (2:1.2.3-1) ... Setting up libmoo-perl (2.004004-1) ... Setting up liblog4j2-java (2.16.0-1~deb11u1) ... Setting up libtk8.6:amd64 (8.6.11-2) ... Setting up libpango-1.0-0:amd64 (1.46.2-3) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up libcairo2:amd64 (1.16.0-5) ... Setting up bowtie2 (2.4.2-2+b3) ... Setting up libgl1:amd64 (1.3.2-1) ... Setting up libmaven-file-management-java (3.0.0-1) ... Setting up hisat2 (2.2.1-2+b3) ... Setting up gnupg (2.2.27-2) ... Setting up libplexus-archiver-java (3.6.0-2) ... Setting up libpangoft2-1.0-0:amd64 (1.46.2-3) ... Setting up libbarclay-java (2.1.0-3.1) ... Setting up libpangocairo-1.0-0:amd64 (1.46.2-3) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-pysam (0.15.4+ds-3+b2) ... Setting up python3-hisat2 (2.2.1-2) ... Setting up r-base-core (4.0.4-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.4.0-1) ... Setting up r-cran-gtable (0.3.0+dfsg-2) ... Setting up r-cran-labeling (0.4.2-1) ... Setting up r-cran-biasedurn (1.07-4) ... Setting up r-cran-futile.options (1.0.1-3) ... Setting up r-cran-lattice (0.20-41-1+b1) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up r-cran-ps (1.5.0-1) ... Setting up r-cran-nlme (3.1.152-1) ... Setting up r-cran-farver (2.0.3-1+b1) ... Setting up r-cran-formatr (1.7-2) ... Setting up r-cran-xml (3.99-0.5-1) ... Setting up r-cran-viridislite (0.3.0-4) ... Setting up r-cran-locfit (1.5-9.4-2+b1) ... Setting up r-cran-statmod (1.4.35-1) ... Setting up r-cran-clipr (0.7.1-1) ... Setting up r-cran-r6 (2.5.0-1) ... Setting up r-cran-pkgkitten (0.2.1-1) ... Setting up r-cran-fastcluster (1.1.25-3+b5) ... Setting up r-cran-magrittr (2.0.1-1) ... Setting up python3-htseq (0.13.5-1) ... Setting up r-cran-rappdirs (0.3.3-1) ... Setting up r-bioc-genomeinfodbdata (1.2.4-1) ... Setting up r-cran-littler (0.3.12-1) ... Setting up r-cran-rcpp (1.0.6-1) ... Setting up r-cran-curl (4.3+dfsg-1+b1) ... Setting up r-cran-brio (1.1.1-1) ... Setting up r-cran-diffobj (0.3.2-1) ... Setting up r-bioc-biocgenerics (0.36.0-1) ... Setting up r-cran-rlang (0.4.10-1) ... Setting up r-cran-matrixstats (0.58.0-3) ... Setting up r-cran-findpython (1.0.7-1) ... Setting up r-cran-assertthat (0.2.1-2) ... Setting up littler (0.3.12-1) ... Setting up r-cran-amap (0.8-18-2+b1) ... Setting up r-bioc-matrixgenerics (1.2.1-4) ... Setting up r-cran-sys (3.4-1) ... Setting up r-cran-plogr (0.2.0-3) ... Setting up r-cran-withr (2.4.1-1) ... Setting up r-cran-processx (3.4.5-1) ... Setting up r-cran-mime (0.9-1+b1) ... Setting up r-cran-praise (1.0.0-4) ... Setting up r-cran-generics (0.1.0-1) ... Setting up r-cran-digest (0.6.27-1) ... Setting up r-cran-ape (5.4-1-1) ... Setting up r-cran-lambda.r (1.2.4-2) ... Setting up r-cran-xml2 (1.3.2-1+b1) ... Setting up r-cran-evaluate (0.14-2) ... Setting up r-cran-dbi (1.1.1-1) ... Setting up r-cran-prettyunits (1.1.1-2) ... Setting up r-cran-fansi (0.4.2-1) ... Setting up r-cran-mass (7.3-53.1-1) ... Setting up r-cran-snow (1:0.4.3-2) ... Setting up r-cran-gtools (3.8.2-1+b1) ... Setting up r-cran-glue (1.4.2-1) ... Setting up r-cran-bit (4.0.4+dfsg-1) ... Setting up r-cran-xtable (1:1.8-4-2) ... Setting up r-cran-cli (2.3.0-1) ... Setting up r-cran-lifecycle (0.2.0-2) ... Setting up r-cran-bitops (1.0-6-5) ... Setting up r-cran-rprojroot (2.0.2-1) ... Setting up r-cran-bit64 (4.0.5-1) ... Setting up r-bioc-zlibbioc (1.36.0+dfsg-1) ... Setting up r-cran-askpass (1.1-2) ... Setting up r-cran-fastmap (1.1.0-1) ... Setting up r-bioc-biobase (2.50.0-1) ... Setting up r-cran-jsonlite (1.7.2+dfsg-1) ... Setting up r-cran-rstudioapi (0.13-1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-utf8 (1.1.4-2) ... Setting up r-cran-colorspace (2.0-0+dfsg-1) ... Setting up r-cran-stringi (1.5.3-1) ... Setting up r-cran-hwriter (1.3.2-4) ... Setting up r-bioc-rots (1.18.0-1) ... Setting up r-cran-cpp11 (0.2.6-1) ... Setting up r-cran-plyr (1.8.6-2) ... Setting up r-cran-rcolorbrewer (1.1-2-3) ... Setting up r-bioc-s4vectors (0.28.1-1) ... Setting up r-cran-futile.logger (1.4.3-4) ... Setting up r-bioc-limma (3.46.0+dfsg-1) ... Setting up r-cran-purrr (0.3.4-1+b1) ... Setting up r-cran-matrix (1.3-2-1) ... Setting up r-bioc-tximport (1.18.0+dfsg-1) ... Setting up r-cran-kernsmooth (2.23-18-1) ... Setting up r-cran-mgcv (1.8-34-1) ... Setting up r-cran-cachem (1.0.3-1) ... Setting up r-cran-catools (1.18.1-1) ... Setting up r-cran-rcpparmadillo (0.10.2.1.0-1) ... Setting up r-bioc-iranges (2.24.1-1) ... Setting up r-bioc-ctc (1.64.0-1) ... Setting up r-cran-argparse (2.0.3-1) ... Setting up r-cran-rcurl (1.98-1.2-1+b1) ... Setting up r-cran-gdata (2.18.0-3) ... Setting up r-bioc-delayedarray (0.16.1+dfsg-1) ... Setting up r-cran-ellipsis (0.3.1-1) ... Setting up r-cran-openssl (1.4.3+dfsg-2) ... Setting up r-cran-stringr (1.4.0-2) ... Setting up r-bioc-biocparallel (1.24.1-1) ... Setting up r-cran-callr (3.5.1-1) ... Setting up r-bioc-edger (3.32.1+dfsg-1) ... Setting up r-bioc-rhtslib (1.22.0+dfsg-1) ... Setting up r-cran-desc (1.2.0-3) ... Setting up r-cran-munsell (0.5.0-2) ... Setting up r-cran-survival (3.2-7-1) ... Setting up r-cran-reshape2 (1.4.4-2) ... Setting up r-bioc-genomeinfodb (1.26.2-2) ... Setting up r-cran-httr (1.4.2-1) ... Setting up r-cran-scales (1.1.1-1) ... Setting up r-cran-memoise (2.0.0-1) ... Setting up r-bioc-xvector (0.30.0-1) ... Setting up r-cran-pkgbuild (1.2.0-1) ... Setting up r-cran-gplots (3.1.1-1) ... Setting up r-cran-vctrs (0.3.6-1) ... Setting up r-cran-pillar (1.4.7-1) ... Setting up r-cran-pkgload (1.1.0-1) ... Setting up r-bioc-genomicranges (1.42.0+dfsg-1) ... Setting up r-bioc-biostrings (2.58.0-1) ... Setting up r-cran-tibble (3.0.6+dfsg-1) ... Setting up r-cran-tidyselect (1.1.0+dfsg-1) ... Setting up r-cran-hms (1.0.0-1) ... Setting up r-cran-blob (1.2.1-2) ... Setting up r-bioc-rsamtools (2.6.0-1) ... Setting up r-cran-dplyr (1.0.4-1) ... Setting up r-cran-dbplyr (2.1.0-1) ... Setting up r-cran-rsqlite (2.2.3-1) ... Setting up r-cran-progress (1.2.2-2) ... Setting up r-bioc-summarizedexperiment (1.20.0+dfsg-1) ... Setting up r-bioc-biocfilecache (1.14.0+dfsg-1) ... Setting up r-bioc-annotationdbi (1.52.0-1) ... Setting up r-bioc-go.db (3.12.1-1) ... Setting up r-cran-rematch2 (2.1.2-2) ... Setting up r-bioc-annotate (1.68.0+dfsg-1) ... Setting up r-cran-readr (1.4.0-1) ... Setting up r-cran-waldo (0.2.3-2) ... Setting up r-bioc-biomart (2.46.2+dfsg-1) ... Setting up r-bioc-genefilter (1.72.1-1) ... Setting up r-bioc-genomicalignments (1.26.0-1) ... Setting up r-bioc-geneplotter (1.68.0-1) ... Setting up r-bioc-rtracklayer (1.50.0-1) ... Setting up r-bioc-genomicfeatures (1.42.1+dfsg-1) ... Setting up r-bioc-genelendatabase (1.26.0-1) ... Setting up r-bioc-goseq (1.42.0-1) ... Setting up r-cran-testthat (3.0.1-1) ... Setting up r-cran-isoband (0.2.3-2) ... Setting up r-cran-ggplot2 (3.3.3+dfsg-1) ... Setting up r-bioc-deseq2 (1.30.1+dfsg-1) ... Setting up r-bioc-dexseq (1.36.0+dfsg-1) ... Setting up r-bioc-qvalue (2.22.0-1) ... Setting up default-jre-headless (2:1.11-72) ... Setting up libwww-perl (6.52-1) ... Setting up openjdk-11-jre-headless:amd64 (11.0.12+7-2) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libconcurrent-java (1.3.4-4.1) ... Setting up openjdk-11-jre:amd64 (11.0.12+7-2) ... Setting up openjdk-11-jdk-headless:amd64 (11.0.12+7-2) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jaotc to provide /usr/bin/jaotc (jaotc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up jaligner (1.0+dfsg-7) ... Setting up default-jre (2:1.11-72) ... Setting up default-jdk-headless (2:1.11-72) ... Setting up devscripts (2.21.3+deb11u1) ... Setting up ant (1.10.9-4) ... Setting up libcolt-free-java (1.2.0+dfsg-7) ... Setting up openjdk-11-jdk:amd64 (11.0.12+7-2) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up javahelper (0.78) ... Setting up ca-certificates-java (20190909) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:emSign_Root_CA_-_G1.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GTS_Root_R4.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R1.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EC-ACC.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DST_Root_CA_X3.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certigna.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:ACCVRAIZ1.pem done. Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up default-jdk (2:1.11-72) ... Setting up ant-optional (1.10.9-4) ... Setting up libjung-free-java (2.0.1+dfsg-1.1) ... Setting up libistack-commons-java (3.0.6-5) ... Setting up libcodemodel-java (2.6+jaxb2.3.0.1-10) ... Setting up libtxw2-java (2.3.0.1-10) ... Setting up libjaxb-java (2.3.0.1-10) ... Setting up libhtsjdk-java (2.23.0+dfsg-2) ... Setting up libpicard-java (2.24.1+dfsg-1) ... Setting up picard-tools (2.24.1+dfsg-1) ... Processing triggers for libc-bin (2.31-13+deb11u2) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/trinityrnaseq-2.11.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../trinityrnaseq_2.11.0+dfsg-6_source.changes dpkg-buildpackage: info: source package trinityrnaseq dpkg-buildpackage: info: source version 2.11.0+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with javahelper debian/rules override_dh_auto_clean make[1]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg' for target in Inchworm Chrysalis; do dh_auto_clean \ --sourcedirectory=${target} --builddirectory=${target}_build; done for target in trinity-plugins/slclust trinity-plugins/scaffold_iworm_contigs trinity-plugins/bamsifter; do dh_auto_clean \ --sourcedirectory=${target}; done cd trinity-plugins/slclust && make -j15 clean make[2]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins/slclust' X=`pwd`; \ for i in src; \ do echo '<<<' $i '>>>'; cd $X/$i; make clean; done <<< src >>> make[3]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins/slclust/src' rm -f slcluster.o graph.o graphnode.o cmd_line_opts.o core a.out *~ \#* slclust Makefile.bak \ ../bin/slclust make[3]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins/slclust/src' make[2]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins/slclust' cd trinity-plugins/scaffold_iworm_contigs && make -j15 clean make[2]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins/scaffold_iworm_contigs' rm -f scaffold_iworm_contigs make[2]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins/scaffold_iworm_contigs' rm --force Chrysalis/Makefile_auto rm --force trinity-plugins/slclust/bin/slclust cd trinity-plugins && /usr/bin/make clean || true make[2]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins' cd seqtk-trinity && /usr/bin/make clean make[3]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins/seqtk-trinity' rm -fr gmon.out *.o ext/*.o a.out seqtk trimadap *~ *.a *.dSYM session* make[3]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins/seqtk-trinity' cd scaffold_iworm_contigs && /usr/bin/make clean make[3]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins/scaffold_iworm_contigs' rm -f scaffold_iworm_contigs make[3]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins/scaffold_iworm_contigs' rm -rf "ParaFly-0.1.0" rm -f ./Trimmomatic # rm symlink cd slclust && /usr/bin/make clean make[3]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins/slclust' X=`pwd`; \ for i in src; \ do echo '<<<' $i '>>>'; cd $X/$i; /usr/bin/make clean; done <<< src >>> make[4]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins/slclust/src' rm -f slcluster.o graph.o graphnode.o cmd_line_opts.o core a.out *~ \#* slclust Makefile.bak \ ../bin/slclust make[4]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins/slclust/src' make[3]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins/slclust' cd COLLECTL && rm -rf "collectl-4.1.0" && rm -f collectl cd htslib && /usr/bin/make clean /bin/sh: 1: cd: can't cd to htslib make[2]: *** [Makefile:55: clean] Error 2 make[2]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins' make[1]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg' jh_clean dh_clean debian/rules binary dh binary --with javahelper dh_update_autotools_config debian/rules override_dh_autoreconf make[1]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg' echo No need to run autoreconf No need to run autoreconf make[1]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg' rm -f Chrysalis/Makefile for target in Inchworm Chrysalis; do dh_auto_configure \ --sourcedirectory=${target} --builddirectory=${target}_build -- \ --prefix=/usr/lib/trinityrnaseq/${target}; done cd Inchworm_build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu --prefix=/usr/lib/trinityrnaseq/Inchworm ../Inchworm -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- system: Linux -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/trinityrnaseq-2.11.0+dfsg/Inchworm_build cd Chrysalis_build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu --prefix=/usr/lib/trinityrnaseq/Chrysalis ../Chrysalis -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- system: Linux -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build make[1]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg' jh_linkjars debian/rules override_dh_auto_build make[1]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg' for target in Inchworm Chrysalis; do dh_auto_build \ --sourcedirectory=${target} --builddirectory=${target}_build; done cd Inchworm_build && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build' /usr/bin/cmake -S/build/trinityrnaseq-2.11.0+dfsg/Inchworm -B/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/trinityrnaseq-2.11.0+dfsg/Inchworm_build/CMakeFiles /build/trinityrnaseq-2.11.0+dfsg/Inchworm_build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build' make -f CMakeFiles/fastaToKmerCoverageStats.dir/build.make CMakeFiles/fastaToKmerCoverageStats.dir/depend make[4]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build' cd /build/trinityrnaseq-2.11.0+dfsg/Inchworm_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/trinityrnaseq-2.11.0+dfsg/Inchworm /build/trinityrnaseq-2.11.0+dfsg/Inchworm /build/trinityrnaseq-2.11.0+dfsg/Inchworm_build /build/trinityrnaseq-2.11.0+dfsg/Inchworm_build /build/trinityrnaseq-2.11.0+dfsg/Inchworm_build/CMakeFiles/fastaToKmerCoverageStats.dir/DependInfo.cmake --color= make -f CMakeFiles/FastaToDeBruijn.dir/build.make CMakeFiles/FastaToDeBruijn.dir/depend make -f CMakeFiles/inchworm.dir/build.make CMakeFiles/inchworm.dir/depend make[4]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build' cd /build/trinityrnaseq-2.11.0+dfsg/Inchworm_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/trinityrnaseq-2.11.0+dfsg/Inchworm /build/trinityrnaseq-2.11.0+dfsg/Inchworm /build/trinityrnaseq-2.11.0+dfsg/Inchworm_build /build/trinityrnaseq-2.11.0+dfsg/Inchworm_build /build/trinityrnaseq-2.11.0+dfsg/Inchworm_build/CMakeFiles/FastaToDeBruijn.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build' cd /build/trinityrnaseq-2.11.0+dfsg/Inchworm_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/trinityrnaseq-2.11.0+dfsg/Inchworm /build/trinityrnaseq-2.11.0+dfsg/Inchworm /build/trinityrnaseq-2.11.0+dfsg/Inchworm_build /build/trinityrnaseq-2.11.0+dfsg/Inchworm_build /build/trinityrnaseq-2.11.0+dfsg/Inchworm_build/CMakeFiles/inchworm.dir/DependInfo.cmake --color= Dependee "/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build/CMakeFiles/FastaToDeBruijn.dir/DependInfo.cmake" is newer than depender "/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build/CMakeFiles/FastaToDeBruijn.dir/depend.internal". Dependee "/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build/CMakeFiles/FastaToDeBruijn.dir/depend.internal". Dependee "/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build/CMakeFiles/fastaToKmerCoverageStats.dir/DependInfo.cmake" is newer than depender "/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build/CMakeFiles/fastaToKmerCoverageStats.dir/depend.internal". Dependee "/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build/CMakeFiles/fastaToKmerCoverageStats.dir/depend.internal". Dependee "/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build/CMakeFiles/inchworm.dir/DependInfo.cmake" is newer than depender "/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build/CMakeFiles/inchworm.dir/depend.internal". Dependee "/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build/CMakeFiles/inchworm.dir/depend.internal". Scanning dependencies of target fastaToKmerCoverageStats Scanning dependencies of target FastaToDeBruijn make[4]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build' make[4]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build' Scanning dependencies of target inchworm make -f CMakeFiles/fastaToKmerCoverageStats.dir/build.make CMakeFiles/fastaToKmerCoverageStats.dir/build make[4]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build' make[4]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build' make -f CMakeFiles/FastaToDeBruijn.dir/build.make CMakeFiles/FastaToDeBruijn.dir/build make[4]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build' make -f CMakeFiles/inchworm.dir/build.make CMakeFiles/inchworm.dir/build make[4]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build' [ 3%] Building CXX object CMakeFiles/fastaToKmerCoverageStats.dir/src/fastaToKmerCoverageStats.cpp.o [ 7%] Building CXX object CMakeFiles/FastaToDeBruijn.dir/src/FastaToDeBruijn.cpp.o /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -o CMakeFiles/fastaToKmerCoverageStats.dir/src/fastaToKmerCoverageStats.cpp.o -c /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/fastaToKmerCoverageStats.cpp [ 10%] Building CXX object CMakeFiles/fastaToKmerCoverageStats.dir/src/argProcessor.cpp.o [ 14%] Building CXX object CMakeFiles/inchworm.dir/src/Fasta_entry.cpp.o /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -o CMakeFiles/fastaToKmerCoverageStats.dir/src/argProcessor.cpp.o -c /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/argProcessor.cpp /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -o CMakeFiles/inchworm.dir/src/Fasta_entry.cpp.o -c /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/Fasta_entry.cpp /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -o CMakeFiles/FastaToDeBruijn.dir/src/FastaToDeBruijn.cpp.o -c /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/FastaToDeBruijn.cpp [ 21%] Building CXX object CMakeFiles/FastaToDeBruijn.dir/src/Fasta_reader.cpp.o [ 21%] Building CXX object CMakeFiles/FastaToDeBruijn.dir/src/argProcessor.cpp.o [ 25%] Building CXX object CMakeFiles/fastaToKmerCoverageStats.dir/src/Fasta_reader.cpp.o [ 28%] Building CXX object CMakeFiles/inchworm.dir/src/IRKE_run.cpp.o /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -o CMakeFiles/FastaToDeBruijn.dir/src/argProcessor.cpp.o -c /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/argProcessor.cpp /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -o CMakeFiles/fastaToKmerCoverageStats.dir/src/Fasta_reader.cpp.o -c /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/Fasta_reader.cpp /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -o CMakeFiles/inchworm.dir/src/IRKE_run.cpp.o -c /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/IRKE_run.cpp [ 32%] Building CXX object CMakeFiles/fastaToKmerCoverageStats.dir/src/Fasta_entry.cpp.o /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -o CMakeFiles/FastaToDeBruijn.dir/src/Fasta_reader.cpp.o -c /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/Fasta_reader.cpp /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -o CMakeFiles/fastaToKmerCoverageStats.dir/src/Fasta_entry.cpp.o -c /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/Fasta_entry.cpp [ 35%] Building CXX object CMakeFiles/FastaToDeBruijn.dir/src/sequenceUtil.cpp.o [ 39%] Building CXX object CMakeFiles/fastaToKmerCoverageStats.dir/src/sequenceUtil.cpp.o [ 42%] Building CXX object CMakeFiles/inchworm.dir/src/sequenceUtil.cpp.o /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -o CMakeFiles/fastaToKmerCoverageStats.dir/src/sequenceUtil.cpp.o -c /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/sequenceUtil.cpp [ 46%] Building CXX object CMakeFiles/FastaToDeBruijn.dir/src/Fasta_entry.cpp.o /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -o CMakeFiles/FastaToDeBruijn.dir/src/Fasta_entry.cpp.o -c /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/Fasta_entry.cpp /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -o CMakeFiles/inchworm.dir/src/sequenceUtil.cpp.o -c /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/sequenceUtil.cpp [ 50%] Building CXX object CMakeFiles/inchworm.dir/src/IRKE.cpp.o [ 53%] Building CXX object CMakeFiles/fastaToKmerCoverageStats.dir/src/string_util.cpp.o /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -o CMakeFiles/FastaToDeBruijn.dir/src/sequenceUtil.cpp.o -c /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/sequenceUtil.cpp /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -o CMakeFiles/fastaToKmerCoverageStats.dir/src/string_util.cpp.o -c /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/string_util.cpp /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -o CMakeFiles/inchworm.dir/src/IRKE.cpp.o -c /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/IRKE.cpp In file included from /usr/include/c++/10/ext/hash_map:60, from /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/KmerCounter.hpp:53, from /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/IRKE.hpp:7, from /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/IRKE_run.cpp:11: /usr/include/c++/10/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ In file included from /usr/include/c++/10/ext/hash_map:60, from /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/KmerCounter.hpp:53, from /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/IRKE.hpp:7, from /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/fastaToKmerCoverageStats.cpp:20: /usr/include/c++/10/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/FastaToDeBruijn.cpp: In function 'void createGraphPerRecord(std::vector >, int, bool, ArgProcessor)': /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/FastaToDeBruijn.cpp:215:39: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 215 | if (seq_region.size() < kmer_length) { continue; } // can be encountered in jaccard-clip mode (rarely) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/c++/10/ext/hash_map:60, from /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/KmerCounter.hpp:53, from /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/IRKE.hpp:7, from /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/IRKE.cpp:21: /usr/include/c++/10/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/fastaToKmerCoverageStats.cpp: In function 'void populate_kmer_counter_from_reads(KmerCounter&, std::string&)': /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/fastaToKmerCoverageStats.cpp:231:18: warning: unused variable 'kmer_length' [-Wunused-variable] 231 | unsigned int kmer_length = kcounter.get_kmer_length(); | ^~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/fastaToKmerCoverageStats.dir/src/stacktrace.cpp.o /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -o CMakeFiles/fastaToKmerCoverageStats.dir/src/stacktrace.cpp.o -c /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/stacktrace.cpp [ 60%] Building CXX object CMakeFiles/FastaToDeBruijn.dir/src/string_util.cpp.o /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -o CMakeFiles/FastaToDeBruijn.dir/src/string_util.cpp.o -c /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/string_util.cpp [ 64%] Building CXX object CMakeFiles/FastaToDeBruijn.dir/src/stacktrace.cpp.o /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -o CMakeFiles/FastaToDeBruijn.dir/src/stacktrace.cpp.o -c /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/stacktrace.cpp [ 67%] Building CXX object CMakeFiles/fastaToKmerCoverageStats.dir/src/KmerCounter.cpp.o /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -o CMakeFiles/fastaToKmerCoverageStats.dir/src/KmerCounter.cpp.o -c /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/KmerCounter.cpp In file included from /usr/include/c++/10/ext/hash_map:60, from /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/KmerCounter.hpp:53, from /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/KmerCounter.cpp:1: /usr/include/c++/10/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ [ 71%] Building CXX object CMakeFiles/inchworm.dir/src/KmerCounter.cpp.o /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -o CMakeFiles/inchworm.dir/src/KmerCounter.cpp.o -c /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/KmerCounter.cpp In file included from /usr/include/c++/10/ext/hash_map:60, from /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/KmerCounter.hpp:53, from /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/KmerCounter.cpp:1: /usr/include/c++/10/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ [ 75%] Building CXX object CMakeFiles/inchworm.dir/src/string_util.cpp.o /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -o CMakeFiles/inchworm.dir/src/string_util.cpp.o -c /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/string_util.cpp [ 78%] Building CXX object CMakeFiles/FastaToDeBruijn.dir/src/DeBruijnGraph.cpp.o /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -o CMakeFiles/FastaToDeBruijn.dir/src/DeBruijnGraph.cpp.o -c /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/DeBruijnGraph.cpp [ 82%] Building CXX object CMakeFiles/inchworm.dir/src/Fasta_reader.cpp.o /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -o CMakeFiles/inchworm.dir/src/Fasta_reader.cpp.o -c /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/Fasta_reader.cpp [ 85%] Building CXX object CMakeFiles/inchworm.dir/src/stacktrace.cpp.o /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -o CMakeFiles/inchworm.dir/src/stacktrace.cpp.o -c /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/stacktrace.cpp [ 89%] Building CXX object CMakeFiles/inchworm.dir/src/argProcessor.cpp.o /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -o CMakeFiles/inchworm.dir/src/argProcessor.cpp.o -c /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/argProcessor.cpp /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/fastaToKmerCoverageStats.cpp:250:9: warning: 'end' may be used uninitialized in this function [-Wmaybe-uninitialized] 250 | #pragma omp parallel private (myTid) | ^~~ /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/DeBruijnGraph.cpp: In member function 'std::string DeBruijnKmer::get_annotations_string()': /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/DeBruijnGraph.cpp:66:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 66 | for (int i=0; i < _annotations.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/DeBruijnGraph.cpp: In member function 'std::string DeBruijnGraph::toDOT(bool)': /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/DeBruijnGraph.cpp:445:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 445 | for (int i=0; i < prev_kmers.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/DeBruijnGraph.cpp:494:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 494 | for (int i=0; i < next_kmers.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/DeBruijnGraph.cpp: In member function 'std::string DeBruijnGraph::toChrysalisFormat(int, bool)': /build/trinityrnaseq-2.11.0+dfsg/Inchworm/src/DeBruijnGraph.cpp:725:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 725 | for (int i = 0; i < collected_kmers.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~ [ 92%] Linking CXX executable fastaToKmerCoverageStats /usr/bin/cmake -E cmake_link_script CMakeFiles/fastaToKmerCoverageStats.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -Wl,-z,relro -Wl,-z,now -lm -ldl -lrt -rdynamic CMakeFiles/fastaToKmerCoverageStats.dir/src/fastaToKmerCoverageStats.cpp.o CMakeFiles/fastaToKmerCoverageStats.dir/src/argProcessor.cpp.o CMakeFiles/fastaToKmerCoverageStats.dir/src/Fasta_reader.cpp.o CMakeFiles/fastaToKmerCoverageStats.dir/src/Fasta_entry.cpp.o CMakeFiles/fastaToKmerCoverageStats.dir/src/sequenceUtil.cpp.o CMakeFiles/fastaToKmerCoverageStats.dir/src/string_util.cpp.o CMakeFiles/fastaToKmerCoverageStats.dir/src/stacktrace.cpp.o CMakeFiles/fastaToKmerCoverageStats.dir/src/KmerCounter.cpp.o -o fastaToKmerCoverageStats make[4]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build' [ 92%] Built target fastaToKmerCoverageStats [ 96%] Linking CXX executable inchworm /usr/bin/cmake -E cmake_link_script CMakeFiles/inchworm.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -Wl,-z,relro -Wl,-z,now -lm -ldl -lrt -rdynamic CMakeFiles/inchworm.dir/src/Fasta_entry.cpp.o CMakeFiles/inchworm.dir/src/IRKE_run.cpp.o CMakeFiles/inchworm.dir/src/sequenceUtil.cpp.o CMakeFiles/inchworm.dir/src/IRKE.cpp.o CMakeFiles/inchworm.dir/src/KmerCounter.cpp.o CMakeFiles/inchworm.dir/src/string_util.cpp.o CMakeFiles/inchworm.dir/src/Fasta_reader.cpp.o CMakeFiles/inchworm.dir/src/stacktrace.cpp.o CMakeFiles/inchworm.dir/src/argProcessor.cpp.o -o inchworm make[4]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build' [ 96%] Built target inchworm [100%] Linking CXX executable FastaToDeBruijn /usr/bin/cmake -E cmake_link_script CMakeFiles/FastaToDeBruijn.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -Wl,-z,relro -Wl,-z,now -lm -ldl -lrt -rdynamic CMakeFiles/FastaToDeBruijn.dir/src/FastaToDeBruijn.cpp.o CMakeFiles/FastaToDeBruijn.dir/src/argProcessor.cpp.o CMakeFiles/FastaToDeBruijn.dir/src/Fasta_reader.cpp.o CMakeFiles/FastaToDeBruijn.dir/src/Fasta_entry.cpp.o CMakeFiles/FastaToDeBruijn.dir/src/sequenceUtil.cpp.o CMakeFiles/FastaToDeBruijn.dir/src/string_util.cpp.o CMakeFiles/FastaToDeBruijn.dir/src/stacktrace.cpp.o CMakeFiles/FastaToDeBruijn.dir/src/DeBruijnGraph.cpp.o -o FastaToDeBruijn make[4]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build' [100%] Built target FastaToDeBruijn make[3]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build' /usr/bin/cmake -E cmake_progress_start /build/trinityrnaseq-2.11.0+dfsg/Inchworm_build/CMakeFiles 0 make[2]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build' cd Chrysalis_build && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' /usr/bin/cmake -S/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -B/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles /build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' make -f CMakeFiles/CreateIwormFastaBundle.dir/build.make CMakeFiles/CreateIwormFastaBundle.dir/depend make -f CMakeFiles/BubbleUpClustering.dir/build.make CMakeFiles/BubbleUpClustering.dir/depend make -f CMakeFiles/ReadsToTranscripts.dir/build.make CMakeFiles/ReadsToTranscripts.dir/depend make -f CMakeFiles/QuantifyGraph.dir/build.make CMakeFiles/QuantifyGraph.dir/depend make -f CMakeFiles/GraphFromFasta.dir/build.make CMakeFiles/GraphFromFasta.dir/depend make -f CMakeFiles/Chrysalis.dir/build.make CMakeFiles/Chrysalis.dir/depend make[4]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' cd /build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/trinityrnaseq-2.11.0+dfsg/Chrysalis /build/trinityrnaseq-2.11.0+dfsg/Chrysalis /build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build /build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build /build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/CreateIwormFastaBundle.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' cd /build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/trinityrnaseq-2.11.0+dfsg/Chrysalis /build/trinityrnaseq-2.11.0+dfsg/Chrysalis /build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build /build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build /build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/ReadsToTranscripts.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' cd /build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/trinityrnaseq-2.11.0+dfsg/Chrysalis /build/trinityrnaseq-2.11.0+dfsg/Chrysalis /build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build /build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build /build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/GraphFromFasta.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' cd /build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/trinityrnaseq-2.11.0+dfsg/Chrysalis /build/trinityrnaseq-2.11.0+dfsg/Chrysalis /build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build /build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build /build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/QuantifyGraph.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' cd /build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/trinityrnaseq-2.11.0+dfsg/Chrysalis /build/trinityrnaseq-2.11.0+dfsg/Chrysalis /build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build /build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build /build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/BubbleUpClustering.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' cd /build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/trinityrnaseq-2.11.0+dfsg/Chrysalis /build/trinityrnaseq-2.11.0+dfsg/Chrysalis /build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build /build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build /build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/Chrysalis.dir/DependInfo.cmake --color= Dependee "/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/ReadsToTranscripts.dir/DependInfo.cmake" is newer than depender "/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/ReadsToTranscripts.dir/depend.internal". Dependee "/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/ReadsToTranscripts.dir/depend.internal". Dependee "/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/Chrysalis.dir/DependInfo.cmake" is newer than depender "/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/Chrysalis.dir/depend.internal". Dependee "/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/Chrysalis.dir/depend.internal". Dependee "/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/GraphFromFasta.dir/DependInfo.cmake" is newer than depender "/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/GraphFromFasta.dir/depend.internal". Dependee "/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/GraphFromFasta.dir/depend.internal". Dependee "/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/CreateIwormFastaBundle.dir/DependInfo.cmake" is newer than depender "/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/CreateIwormFastaBundle.dir/depend.internal". Dependee "/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/CreateIwormFastaBundle.dir/depend.internal". Dependee "/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/QuantifyGraph.dir/DependInfo.cmake" is newer than depender "/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/QuantifyGraph.dir/depend.internal". Dependee "/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/QuantifyGraph.dir/depend.internal". Dependee "/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/BubbleUpClustering.dir/DependInfo.cmake" is newer than depender "/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/BubbleUpClustering.dir/depend.internal". Dependee "/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles/BubbleUpClustering.dir/depend.internal". Scanning dependencies of target QuantifyGraph Scanning dependencies of target BubbleUpClustering make[4]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' make[4]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' Scanning dependencies of target ReadsToTranscripts Scanning dependencies of target CreateIwormFastaBundle Scanning dependencies of target Chrysalis make -f CMakeFiles/BubbleUpClustering.dir/build.make CMakeFiles/BubbleUpClustering.dir/build make[4]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' make[4]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' make[4]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' make -f CMakeFiles/CreateIwormFastaBundle.dir/build.make CMakeFiles/CreateIwormFastaBundle.dir/build make[4]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' make[4]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' make -f CMakeFiles/ReadsToTranscripts.dir/build.make CMakeFiles/ReadsToTranscripts.dir/build make[4]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' make -f CMakeFiles/QuantifyGraph.dir/build.make CMakeFiles/QuantifyGraph.dir/build make[4]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' make -f CMakeFiles/Chrysalis.dir/build.make CMakeFiles/Chrysalis.dir/build Scanning dependencies of target GraphFromFasta make[4]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' make[4]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' make -f CMakeFiles/GraphFromFasta.dir/build.make CMakeFiles/GraphFromFasta.dir/build [ 1%] Building CXX object CMakeFiles/BubbleUpClustering.dir/analysis/AACodons.cc.o [ 2%] Building CXX object CMakeFiles/BubbleUpClustering.dir/aligns/KmerAlignCore.cc.o make[4]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' [ 4%] Building CXX object CMakeFiles/CreateIwormFastaBundle.dir/analysis/AACodons.cc.o [ 5%] Building CXX object CMakeFiles/ReadsToTranscripts.dir/analysis/NonRedKmerTable.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/BubbleUpClustering.dir/analysis/AACodons.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/AACodons.cc [ 7%] Building CXX object CMakeFiles/BubbleUpClustering.dir/analysis/BubbleUpClustering.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/CreateIwormFastaBundle.dir/analysis/AACodons.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/AACodons.cc /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/ReadsToTranscripts.dir/analysis/NonRedKmerTable.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/BubbleUpClustering.dir/aligns/KmerAlignCore.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc [ 8%] Building CXX object CMakeFiles/ReadsToTranscripts.dir/analysis/AACodons.cc.o [ 10%] Building CXX object 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CMakeFiles/ReadsToTranscripts.dir/analysis/DNAVector.cc.o [ 14%] Building CXX object CMakeFiles/QuantifyGraph.dir/aligns/KmerAlignCore.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/BubbleUpClustering.dir/analysis/BubbleUpClustering.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/BubbleUpClustering.cc /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/CreateIwormFastaBundle.dir/analysis/DNAVector.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/DNAVector.cc [ 16%] Building CXX object 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Building CXX object CMakeFiles/BubbleUpClustering.dir/analysis/DeBruijnGraph.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/BubbleUpClustering.dir/analysis/DeBruijnGraph.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/DeBruijnGraph.cc /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/Chrysalis.dir/aligns/KmerAlignCore.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/QuantifyGraph.dir/aligns/KmerAlignCore.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/BubbleUpClustering.dir/analysis/DNAVector.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/DNAVector.cc [ 22%] Building CXX object CMakeFiles/GraphFromFasta.dir/aligns/KmerAlignCore.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/GraphFromFasta.dir/aligns/KmerAlignCore.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/ErrorHandling.cc: In function 'void print_trace(FILE*, const char*, int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/ErrorHandling.cc:7:24: warning: unused parameter 'out' [-Wunused-parameter] 7 | void print_trace(FILE *out, const char *file, int line) | ~~~~~~^~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/ErrorHandling.cc:7:41: warning: unused parameter 'file' [-Wunused-parameter] 7 | void print_trace(FILE *out, const char *file, int line) | ~~~~~~~~~~~~^~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/ErrorHandling.cc:7:51: warning: unused parameter 'line' [-Wunused-parameter] 7 | void print_trace(FILE *out, const char *file, int line) | ~~~~^~~~ [ 23%] Building CXX object CMakeFiles/CreateIwormFastaBundle.dir/base/FileParser.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/CreateIwormFastaBundle.dir/base/FileParser.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/FileParser.cc /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::AddData(const vecDNAVector&, const vecNumVector&, int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:79:49: warning: unused variable 't' [-Wunused-variable] 79 | KmerAlignCoreRecordStoreTable & t = m_table; // not used? | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:49:9: warning: unused variable 'i' [-Wunused-variable] 49 | int i, j, k; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::AddData(const DNAVector&, int, int, bool)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:128:9: warning: unused variable 'i' [-Wunused-variable] 128 | int i, j, k; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:128:12: warning: unused variable 'j' [-Wunused-variable] 128 | int i, j, k; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::SortAll()': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:148:9: warning: unused variable 'i' [-Wunused-variable] 148 | int i, j; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'const svec& KmerAlignCore::GetMatchesDirectly(const DNAVector&, int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:158:9: warning: unused variable 'size' [-Wunused-variable] 158 | int size = m_pTrans->GetSize(); | ^~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:159:9: warning: unused variable 'i' [-Wunused-variable] 159 | int i, j; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:159:12: warning: unused variable 'j' [-Wunused-variable] 159 | int i, j; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::MergeSortFilter(svec&, const svec&, const svec&)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:291:9: warning: unused variable 'i' [-Wunused-variable] 291 | int i; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/DeBruijnGraph.cc: In member function 'void DeBruijnKmer::add_next_kmer(kmer_int_type_t, unsigned int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:154:66: warning: unused parameter 'kmer_length' [-Wunused-parameter] 154 | void DeBruijnKmer::add_next_kmer(kmer_int_type_t k, unsigned int kmer_length) { | ~~~~~~~~~~~~~^~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::SetUp(const vecDNAVector&, bool)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:46:20: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 46 | for (j=0; j<=d.size()-m_k; j++) { | ~^~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:56:20: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 56 | for (j=0; j<=d.size()-m_k; j++) { | ~^~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:79:18: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 79 | for (j=0; j<=d.size()-m_k; j++) { | ~^~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::AddData(const vecDNAVector&)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:109:16: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 109 | for (j=0; j<= d.isize()-m_k; j++) { | ~^~~~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::AddData(vecDNAVectorStream&)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:125:9: warning: unused variable 'i' [-Wunused-variable] 125 | int i, j; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::AddData(const vecDNAVector&, const vecNumVector&, int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:79:49: warning: unused variable 't' [-Wunused-variable] 79 | KmerAlignCoreRecordStoreTable & t = m_table; // not used? | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:49:9: warning: unused variable 'i' [-Wunused-variable] 49 | int i, j, k; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::AddData(const DNAVector&, int, int, bool)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:128:9: warning: unused variable 'i' [-Wunused-variable] 128 | int i, j, k; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:128:12: warning: unused variable 'j' [-Wunused-variable] 128 | int i, j, k; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::SortAll()': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:148:9: warning: unused variable 'i' [-Wunused-variable] 148 | int i, j; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'const svec& KmerAlignCore::GetMatchesDirectly(const DNAVector&, int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:158:9: warning: unused variable 'size' [-Wunused-variable] 158 | int size = m_pTrans->GetSize(); | ^~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:159:9: warning: unused variable 'i' [-Wunused-variable] 159 | int i, j; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:159:12: warning: unused variable 'j' [-Wunused-variable] 159 | int i, j; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::MergeSortFilter(svec&, const svec&, const svec&)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:291:9: warning: unused variable 'i' [-Wunused-variable] 291 | int i; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/DeBruijnGraph.cc: In member function 'std::vector DeBruijnGraph::deconvolute_DS_mirror_graph()': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:355:22: warning: variable 'rdk' set but not used [-Wunused-but-set-variable] 355 | DeBruijnKmer rdk = _kmer_map.find(rk)->second; | ^~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/DeBruijnGraph.cc: In member function 'std::vector > DeBruijnGraph::get_candidate_weldmers(kmer_int_type_t, int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:473:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 473 | for (int i = 0; i < left_extensions.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:476:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 476 | for (int j = 0; j < right_extensions.size(); j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/DeBruijnGraph.cc: In member function 'void DeBruijnGraph::recursively_construct_kmer_extensions(kmer_int_type_t, std::vector&, std::vector >&, char, std::map&, int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:513:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 513 | for (int i = 0; i < adjacent_kmers.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:527:41: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 527 | if (kmer_extension_chars.size() == flank_extension_length) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/FileParser.cc: In member function 'bool StringParser::IsString(int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/FileParser.cc:50:33: warning: unused parameter 'index' [-Wunused-parameter] 50 | bool StringParser::IsString(int index) | ~~~~^~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::AddData(const vecDNAVector&, const vecNumVector&, int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:79:49: warning: unused variable 't' [-Wunused-variable] 79 | KmerAlignCoreRecordStoreTable & t = m_table; // not used? | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:49:9: warning: unused variable 'i' [-Wunused-variable] 49 | int i, j, k; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::AddData(const DNAVector&, int, int, bool)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:128:9: warning: unused variable 'i' [-Wunused-variable] 128 | int i, j, k; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:128:12: warning: unused variable 'j' [-Wunused-variable] 128 | int i, j, k; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::SortAll()': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:148:9: warning: unused variable 'i' [-Wunused-variable] 148 | int i, j; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'const svec& KmerAlignCore::GetMatchesDirectly(const DNAVector&, int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:158:9: warning: unused variable 'size' [-Wunused-variable] 158 | int size = m_pTrans->GetSize(); | ^~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:159:9: warning: unused variable 'i' [-Wunused-variable] 159 | int i, j; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:159:12: warning: unused variable 'j' [-Wunused-variable] 159 | int i, j; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::MergeSortFilter(svec&, const svec&, const svec&)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:291:9: warning: unused variable 'i' [-Wunused-variable] 291 | int i; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/CreateIwormFastaBundle.cc: In function 'int main(int, char**)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/CreateIwormFastaBundle.cc:181:17: warning: unused variable 'num_iworm_contigs' [-Wunused-variable] 181 | int num_iworm_contigs = parser.AsInt(2); | ^~~~~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/CreateIwormFastaBundle.cc:143:10: warning: unused variable 'DEBUG' [-Wunused-variable] 143 | bool DEBUG = P.GetBoolValueFor(debugCmmd); | ^~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/CreateIwormFastaBundle.cc:166:12: warning: unused variable 'pOut' [-Wunused-variable] 166 | FILE * pOut = NULL; | ^~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::AddData(const vecDNAVector&, const vecNumVector&, int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:79:49: warning: unused variable 't' [-Wunused-variable] 79 | KmerAlignCoreRecordStoreTable & t = m_table; // not used? | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:49:9: warning: unused variable 'i' [-Wunused-variable] 49 | int i, j, k; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::AddData(const DNAVector&, int, int, bool)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:128:9: warning: unused variable 'i' [-Wunused-variable] 128 | int i, j, k; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:128:12: warning: unused variable 'j' [-Wunused-variable] 128 | int i, j, k; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::SortAll()': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:148:9: warning: unused variable 'i' [-Wunused-variable] 148 | int i, j; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'const svec& KmerAlignCore::GetMatchesDirectly(const DNAVector&, int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:158:9: warning: unused variable 'size' [-Wunused-variable] 158 | int size = m_pTrans->GetSize(); | ^~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:159:9: warning: unused variable 'i' [-Wunused-variable] 159 | int i, j; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:159:12: warning: unused variable 'j' [-Wunused-variable] 159 | int i, j; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc: In member function 'void KmerAlignCore::MergeSortFilter(svec&, const svec&, const svec&)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/aligns/KmerAlignCore.cc:291:9: warning: unused variable 'i' [-Wunused-variable] 291 | int i; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/BubbleUpClustering.cc: In function 'svec grow_prioritized_clusters(std::string&, std::map&)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/BubbleUpClustering.cc:111:78: warning: unused parameter 'weld_reinforced_iworm_clusters' [-Wunused-parameter] 111 | svec grow_prioritized_clusters(string& weld_graph_file, map& weld_reinforced_iworm_clusters) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/BubbleUpClustering.cc: In function 'svec sl_cluster_pools(std::map&, std::map&)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/BubbleUpClustering.cc:326:40: warning: implicitly-declared 'Pool& Pool::operator=(const Pool&)' is deprecated [-Wdeprecated-copy] 326 | pool_vec[oldpool_id] = tmp; | ^~~ In file included from /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/BubbleUpClustering.cc:19: /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/Pool.h:24:5: note: because 'Pool' has user-provided 'Pool::Pool(const Pool&)' 24 | Pool(const Pool& p) { | ^~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/BubbleUpClustering.cc: In function 'void populate_weld_reinforced_iworm_clusters(std::string&, std::map&)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/BubbleUpClustering.cc:525:57: warning: implicitly-declared 'Pool& Pool::operator=(const Pool&)' is deprecated [-Wdeprecated-copy] 525 | weld_reinforced_iworm_clusters[ node_id ] = p; | ^ In file included from /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/BubbleUpClustering.cc:19: /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/Pool.h:24:5: note: because 'Pool' has user-provided 'Pool::Pool(const Pool&)' 24 | Pool(const Pool& p) { | ^~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/BubbleUpClustering.cc: In function 'int main(int, char**)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/BubbleUpClustering.cc:628:30: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 628 | for (size_t j = 0; j < p.size(); j++) { | ~~^~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/BubbleUpClustering.cc:641:30: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 641 | for (size_t j = 0; j < p.size(); j++) { | ~~^~~~~~~~~~ [ 25%] Building CXX object CMakeFiles/CreateIwormFastaBundle.dir/base/StringUtil.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/CreateIwormFastaBundle.dir/base/StringUtil.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/StringUtil.cc [ 26%] Building CXX object CMakeFiles/QuantifyGraph.dir/analysis/AACodons.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/QuantifyGraph.dir/analysis/AACodons.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/AACodons.cc [ 27%] Building CXX object CMakeFiles/Chrysalis.dir/analysis/AACodons.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/Chrysalis.dir/analysis/AACodons.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/AACodons.cc [ 29%] Building CXX object CMakeFiles/GraphFromFasta.dir/analysis/AACodons.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/GraphFromFasta.dir/analysis/AACodons.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/AACodons.cc [ 30%] Building CXX object CMakeFiles/CreateIwormFastaBundle.dir/util/mutil.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/CreateIwormFastaBundle.dir/util/mutil.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc [ 32%] Building CXX object CMakeFiles/BubbleUpClustering.dir/analysis/KmerTable.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/BubbleUpClustering.dir/analysis/KmerTable.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/KmerTable.cc [ 33%] Building CXX object CMakeFiles/ReadsToTranscripts.dir/analysis/ReadsToTranscripts.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/ReadsToTranscripts.dir/analysis/ReadsToTranscripts.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/ReadsToTranscripts.cc [ 35%] Building CXX object CMakeFiles/BubbleUpClustering.dir/analysis/NonRedKmerTable.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/BubbleUpClustering.dir/analysis/NonRedKmerTable.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc [ 36%] Building CXX object CMakeFiles/ReadsToTranscripts.dir/analysis/sequenceUtil.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/ReadsToTranscripts.dir/analysis/sequenceUtil.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/sequenceUtil.cc [ 38%] Building CXX object CMakeFiles/BubbleUpClustering.dir/analysis/sequenceUtil.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/BubbleUpClustering.dir/analysis/sequenceUtil.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/sequenceUtil.cc /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc: In member function 'virtual bool CMAsciiReadFileStream::ReadSimpleType(void*, long int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:313:14: warning: passing argument 1 to 'restrict'-qualified parameter aliases with argument 4 [-Wrestrict] 313 | if (fscanf(m_pFile, szText, sizeof(szText), m_pFile) == EOF) { | ^~~~~~~ ~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:303:51: warning: unused parameter 'pData' [-Wunused-parameter] 303 | bool CMAsciiReadFileStream::ReadSimpleType(void * pData, long lenInBytes) | ~~~~~~~^~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:303:63: warning: unused parameter 'lenInBytes' [-Wunused-parameter] 303 | bool CMAsciiReadFileStream::ReadSimpleType(void * pData, long lenInBytes) | ~~~~~^~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc: In member function 'virtual bool CMAsciiReadFileStream::ReadString(CMString&)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:436:14: warning: passing argument 1 to 'restrict'-qualified parameter aliases with argument 4 [-Wrestrict] 436 | if (fscanf(m_pFile, pData, len, m_pFile) == EOF) { | ^~~~~~~ ~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc: In member function 'virtual bool CMAsciiWriteFileStream::WriteBlob(const void*, long int, long int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:526:53: warning: unused parameter 'pData' [-Wunused-parameter] 526 | bool CMAsciiWriteFileStream::WriteBlob(const void * pData, long lenInElements, long elSize) | ~~~~~~~~~~~~~^~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:526:65: warning: unused parameter 'lenInElements' [-Wunused-parameter] 526 | bool CMAsciiWriteFileStream::WriteBlob(const void * pData, long lenInElements, long elSize) | ~~~~~^~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:526:85: warning: unused parameter 'elSize' [-Wunused-parameter] 526 | bool CMAsciiWriteFileStream::WriteBlob(const void * pData, long lenInElements, long elSize) | ~~~~~^~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc: In function 'void MLog(const MCL_TCHAR*, bool)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:738:53: warning: unused parameter 'bLineFeed' [-Wunused-parameter] 738 | MDLLEXPORT void MLog(const MCL_TCHAR * szText, bool bLineFeed) | ~~~~~^~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc: In function 'void MLog(const MCL_TCHAR*, long int, bool)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:761:63: warning: unused parameter 'bLineFeed' [-Wunused-parameter] 761 | MDLLEXPORT void MLog(const MCL_TCHAR * szText, long val, bool bLineFeed) | ~~~~~^~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc: In function 'void MLog(const MCL_TCHAR*, const MCL_TCHAR*, bool)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:787:80: warning: unused parameter 'bLineFeed' [-Wunused-parameter] 787 | MDLLEXPORT void MLog(const MCL_TCHAR * szText, const MCL_TCHAR * szText2, bool bLineFeed) | ~~~~~^~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc: In function 'void MCLSetUTF8Encode(bool)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:1288:39: warning: unused parameter 'b' [-Wunused-parameter] 1288 | MDLLEXPORT void MCLSetUTF8Encode(bool b) | ~~~~~^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc: In function 'bool AddUTF8Sig(CMString&)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:1688:16: warning: unused variable 'p' [-Wunused-variable] 1688 | const char * p = (const char*)string; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/KmerTable.cc: In member function 'long long int KmerSequence::BasesToNumber(const DNAVector&, int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/KmerTable.cc:27:13: warning: unused variable 'i' [-Wunused-variable] 27 | long long i; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::SetUp(const vecDNAVector&, bool)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:46:20: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 46 | for (j=0; j<=d.size()-m_k; j++) { | ~^~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:56:20: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 56 | for (j=0; j<=d.size()-m_k; j++) { | ~^~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:79:18: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 79 | for (j=0; j<=d.size()-m_k; j++) { | ~^~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::AddData(const vecDNAVector&)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:109:16: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 109 | for (j=0; j<= d.isize()-m_k; j++) { | ~^~~~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::AddData(vecDNAVectorStream&)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:125:9: warning: unused variable 'i' [-Wunused-variable] 125 | int i, j; | ^ [ 39%] Building CXX object CMakeFiles/ReadsToTranscripts.dir/analysis/stacktrace.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/ReadsToTranscripts.dir/analysis/stacktrace.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/stacktrace.cc [ 41%] Building CXX object CMakeFiles/BubbleUpClustering.dir/analysis/stacktrace.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/BubbleUpClustering.dir/analysis/stacktrace.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/stacktrace.cc [ 42%] Building CXX object CMakeFiles/BubbleUpClustering.dir/base/ErrorHandling.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/BubbleUpClustering.dir/base/ErrorHandling.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/ErrorHandling.cc /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/sequenceUtil.cc: In function 'bool contains_non_gatc(std::string)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/sequenceUtil.cc:33:19: warning: array subscript has type 'char' [-Wchar-subscripts] 33 | if (_base_to_int[c] > 3) | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/sequenceUtil.cc: In function 'kmer_int_type_t kmer_to_intval(std::string)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/sequenceUtil.cc:264:25: warning: array subscript has type 'char' [-Wchar-subscripts] 264 | int val = _base_to_int[c]; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/sequenceUtil.cc: In function 'bool contains_non_gatc(std::string)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/sequenceUtil.cc:33:19: warning: array subscript has type 'char' [-Wchar-subscripts] 33 | if (_base_to_int[c] > 3) | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/sequenceUtil.cc: In function 'kmer_int_type_t kmer_to_intval(std::string)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/sequenceUtil.cc:264:25: warning: array subscript has type 'char' [-Wchar-subscripts] 264 | int val = _base_to_int[c]; | ^ [ 44%] Building CXX object CMakeFiles/BubbleUpClustering.dir/base/FileParser.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/BubbleUpClustering.dir/base/FileParser.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/FileParser.cc [ 45%] Building CXX object CMakeFiles/ReadsToTranscripts.dir/base/ErrorHandling.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/ReadsToTranscripts.dir/base/ErrorHandling.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/ErrorHandling.cc [ 47%] Building CXX object CMakeFiles/ReadsToTranscripts.dir/base/FileParser.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/ReadsToTranscripts.dir/base/FileParser.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/FileParser.cc [ 48%] Building CXX object CMakeFiles/BubbleUpClustering.dir/base/StringUtil.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/BubbleUpClustering.dir/base/StringUtil.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/StringUtil.cc /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/ErrorHandling.cc: In function 'void print_trace(FILE*, const char*, int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/ErrorHandling.cc:7:24: warning: unused parameter 'out' [-Wunused-parameter] 7 | void print_trace(FILE *out, const char *file, int line) | ~~~~~~^~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/ErrorHandling.cc:7:41: warning: unused parameter 'file' [-Wunused-parameter] 7 | void print_trace(FILE *out, const char *file, int line) | ~~~~~~~~~~~~^~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/ErrorHandling.cc:7:51: warning: unused parameter 'line' [-Wunused-parameter] 7 | void print_trace(FILE *out, const char *file, int line) | ~~~~^~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/ErrorHandling.cc: In function 'void print_trace(FILE*, const char*, int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/ErrorHandling.cc:7:24: warning: unused parameter 'out' [-Wunused-parameter] 7 | void print_trace(FILE *out, const char *file, int line) | ~~~~~~^~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/ErrorHandling.cc:7:41: warning: unused parameter 'file' [-Wunused-parameter] 7 | void print_trace(FILE *out, const char *file, int line) | ~~~~~~~~~~~~^~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/ErrorHandling.cc:7:51: warning: unused parameter 'line' [-Wunused-parameter] 7 | void print_trace(FILE *out, const char *file, int line) | ~~~~^~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/FileParser.cc: In member function 'bool StringParser::IsString(int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/FileParser.cc:50:33: warning: unused parameter 'index' [-Wunused-parameter] 50 | bool StringParser::IsString(int index) | ~~~~^~~~~ [ 50%] Building CXX object CMakeFiles/ReadsToTranscripts.dir/base/StringUtil.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/ReadsToTranscripts.dir/base/StringUtil.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/StringUtil.cc [ 51%] Building CXX object CMakeFiles/BubbleUpClustering.dir/util/mutil.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/BubbleUpClustering.dir/util/mutil.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc [ 52%] Building CXX object CMakeFiles/ReadsToTranscripts.dir/util/mutil.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/ReadsToTranscripts.dir/util/mutil.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc [ 54%] Building CXX object CMakeFiles/Chrysalis.dir/analysis/Chrysalis.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/Chrysalis.dir/analysis/Chrysalis.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/Chrysalis.cc [ 55%] Building CXX object CMakeFiles/GraphFromFasta.dir/analysis/DNAVector.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/GraphFromFasta.dir/analysis/DNAVector.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/DNAVector.cc /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc: In member function 'virtual bool CMAsciiReadFileStream::ReadSimpleType(void*, long int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:313:14: warning: passing argument 1 to 'restrict'-qualified parameter aliases with argument 4 [-Wrestrict] 313 | if (fscanf(m_pFile, szText, sizeof(szText), m_pFile) == EOF) { | ^~~~~~~ ~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:303:51: warning: unused parameter 'pData' [-Wunused-parameter] 303 | bool CMAsciiReadFileStream::ReadSimpleType(void * pData, long lenInBytes) | ~~~~~~~^~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:303:63: warning: unused parameter 'lenInBytes' [-Wunused-parameter] 303 | bool CMAsciiReadFileStream::ReadSimpleType(void * pData, long lenInBytes) | ~~~~~^~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc: In member function 'virtual bool CMAsciiReadFileStream::ReadString(CMString&)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:436:14: warning: passing argument 1 to 'restrict'-qualified parameter aliases with argument 4 [-Wrestrict] 436 | if (fscanf(m_pFile, pData, len, m_pFile) == EOF) { | ^~~~~~~ ~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc: In member function 'virtual bool CMAsciiWriteFileStream::WriteBlob(const void*, long int, long int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:526:53: warning: unused parameter 'pData' [-Wunused-parameter] 526 | bool CMAsciiWriteFileStream::WriteBlob(const void * pData, long lenInElements, long elSize) | ~~~~~~~~~~~~~^~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:526:65: warning: unused parameter 'lenInElements' [-Wunused-parameter] 526 | bool CMAsciiWriteFileStream::WriteBlob(const void * pData, long lenInElements, long elSize) | ~~~~~^~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:526:85: warning: unused parameter 'elSize' [-Wunused-parameter] 526 | bool CMAsciiWriteFileStream::WriteBlob(const void * pData, long lenInElements, long elSize) | ~~~~~^~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc: In function 'void MLog(const MCL_TCHAR*, bool)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:738:53: warning: unused parameter 'bLineFeed' [-Wunused-parameter] 738 | MDLLEXPORT void MLog(const MCL_TCHAR * szText, bool bLineFeed) | ~~~~~^~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc: In function 'void MLog(const MCL_TCHAR*, long int, bool)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:761:63: warning: unused parameter 'bLineFeed' [-Wunused-parameter] 761 | MDLLEXPORT void MLog(const MCL_TCHAR * szText, long val, bool bLineFeed) | ~~~~~^~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc: In function 'void MLog(const MCL_TCHAR*, const MCL_TCHAR*, bool)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:787:80: warning: unused parameter 'bLineFeed' [-Wunused-parameter] 787 | MDLLEXPORT void MLog(const MCL_TCHAR * szText, const MCL_TCHAR * szText2, bool bLineFeed) | ~~~~~^~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc: In function 'void MCLSetUTF8Encode(bool)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:1288:39: warning: unused parameter 'b' [-Wunused-parameter] 1288 | MDLLEXPORT void MCLSetUTF8Encode(bool b) | ~~~~~^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc: In function 'bool AddUTF8Sig(CMString&)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:1688:16: warning: unused variable 'p' [-Wunused-variable] 1688 | const char * p = (const char*)string; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc: In member function 'virtual bool CMAsciiReadFileStream::ReadSimpleType(void*, long int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:313:14: warning: passing argument 1 to 'restrict'-qualified parameter aliases with argument 4 [-Wrestrict] 313 | if (fscanf(m_pFile, szText, sizeof(szText), m_pFile) == EOF) { | ^~~~~~~ ~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:303:51: warning: unused parameter 'pData' [-Wunused-parameter] 303 | bool CMAsciiReadFileStream::ReadSimpleType(void * pData, long lenInBytes) | ~~~~~~~^~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:303:63: warning: unused parameter 'lenInBytes' [-Wunused-parameter] 303 | bool CMAsciiReadFileStream::ReadSimpleType(void * pData, long lenInBytes) | ~~~~~^~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc: In member function 'virtual bool CMAsciiReadFileStream::ReadString(CMString&)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:436:14: warning: passing argument 1 to 'restrict'-qualified parameter aliases with argument 4 [-Wrestrict] 436 | if (fscanf(m_pFile, pData, len, m_pFile) == EOF) { | ^~~~~~~ ~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc: In member function 'virtual bool CMAsciiWriteFileStream::WriteBlob(const void*, long int, long int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:526:53: warning: unused parameter 'pData' [-Wunused-parameter] 526 | bool CMAsciiWriteFileStream::WriteBlob(const void * pData, long lenInElements, long elSize) | ~~~~~~~~~~~~~^~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:526:65: warning: unused parameter 'lenInElements' [-Wunused-parameter] 526 | bool CMAsciiWriteFileStream::WriteBlob(const void * pData, long lenInElements, long elSize) | ~~~~~^~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:526:85: warning: unused parameter 'elSize' [-Wunused-parameter] 526 | bool CMAsciiWriteFileStream::WriteBlob(const void * pData, long lenInElements, long elSize) | ~~~~~^~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc: In function 'void MLog(const MCL_TCHAR*, bool)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:738:53: warning: unused parameter 'bLineFeed' [-Wunused-parameter] 738 | MDLLEXPORT void MLog(const MCL_TCHAR * szText, bool bLineFeed) | ~~~~~^~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc: In function 'void MLog(const MCL_TCHAR*, long int, bool)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:761:63: warning: unused parameter 'bLineFeed' [-Wunused-parameter] 761 | MDLLEXPORT void MLog(const MCL_TCHAR * szText, long val, bool bLineFeed) | ~~~~~^~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc: In function 'void MLog(const MCL_TCHAR*, const MCL_TCHAR*, bool)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:787:80: warning: unused parameter 'bLineFeed' [-Wunused-parameter] 787 | MDLLEXPORT void MLog(const MCL_TCHAR * szText, const MCL_TCHAR * szText2, bool bLineFeed) | ~~~~~^~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc: In function 'void MCLSetUTF8Encode(bool)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:1288:39: warning: unused parameter 'b' [-Wunused-parameter] 1288 | MDLLEXPORT void MCLSetUTF8Encode(bool b) | ~~~~~^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc: In function 'bool AddUTF8Sig(CMString&)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/util/mutil.cc:1688:16: warning: unused variable 'p' [-Wunused-variable] 1688 | const char * p = (const char*)string; | ^ [ 57%] Building CXX object CMakeFiles/GraphFromFasta.dir/analysis/DeBruijnGraph.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/GraphFromFasta.dir/analysis/DeBruijnGraph.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/DeBruijnGraph.cc [ 58%] Building CXX object CMakeFiles/QuantifyGraph.dir/analysis/DNAVector.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/QuantifyGraph.dir/analysis/DNAVector.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/DNAVector.cc /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/FileParser.cc: In member function 'bool StringParser::IsString(int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/FileParser.cc:50:33: warning: unused parameter 'index' [-Wunused-parameter] 50 | bool StringParser::IsString(int index) | ~~~~^~~~~ [ 60%] Building CXX object CMakeFiles/QuantifyGraph.dir/analysis/KmerTable.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/QuantifyGraph.dir/analysis/KmerTable.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/KmerTable.cc [ 61%] Building CXX object CMakeFiles/QuantifyGraph.dir/analysis/NonRedKmerTable.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/QuantifyGraph.dir/analysis/NonRedKmerTable.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/Chrysalis.cc: In function 'int main(int, char**)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/Chrysalis.cc:582:21: warning: unused variable 'num_iworm_contigs' [-Wunused-variable] 582 | int num_iworm_contigs = parser.AsInt(2); | ^~~~~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/Chrysalis.cc:570:16: warning: unused variable 'pOut' [-Wunused-variable] 570 | FILE * pOut = NULL; | ^~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/Chrysalis.cc:342:10: warning: unused variable 'bSkip' [-Wunused-variable] 342 | bool bSkip = P.GetBoolValueFor(skipCmmd); | ^~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/Chrysalis.cc:347:9: warning: unused variable 'pairDist' [-Wunused-variable] 347 | int pairDist = P.GetIntValueFor(distCmmd); | ^~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/Chrysalis.cc:354:10: warning: variable 'bBreak' set but not used [-Wunused-but-set-variable] 354 | bool bBreak = true; | ^~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/Chrysalis.cc:359:10: warning: unused variable 'bButt' [-Wunused-variable] 359 | bool bButt = P.GetBoolValueFor(buttCmmd); | ^~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/Chrysalis.cc:361:10: warning: unused variable 'max_reads' [-Wunused-variable] 361 | long max_reads = P.GetLongValueFor(maxReadsCmd); | ^~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/Chrysalis.cc:372:10: warning: unused variable 'DEBUG' [-Wunused-variable] 372 | bool DEBUG = P.GetBoolValueFor(debugCmmd); | ^~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/DeBruijnGraph.cc: In member function 'void DeBruijnKmer::add_next_kmer(kmer_int_type_t, unsigned int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:154:66: warning: unused parameter 'kmer_length' [-Wunused-parameter] 154 | void DeBruijnKmer::add_next_kmer(kmer_int_type_t k, unsigned int kmer_length) { | ~~~~~~~~~~~~~^~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/Chrysalis.cc:384:11: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 384 | system(command.c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/KmerTable.cc: In member function 'long long int KmerSequence::BasesToNumber(const DNAVector&, int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/KmerTable.cc:27:13: warning: unused variable 'i' [-Wunused-variable] 27 | long long i; | ^ [ 63%] Building CXX object CMakeFiles/QuantifyGraph.dir/analysis/QuantifyGraph.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/QuantifyGraph.dir/analysis/QuantifyGraph.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/QuantifyGraph.cc /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/DeBruijnGraph.cc: In member function 'std::vector DeBruijnGraph::deconvolute_DS_mirror_graph()': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:355:22: warning: variable 'rdk' set but not used [-Wunused-but-set-variable] 355 | DeBruijnKmer rdk = _kmer_map.find(rk)->second; | ^~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/DeBruijnGraph.cc: In member function 'std::vector > DeBruijnGraph::get_candidate_weldmers(kmer_int_type_t, int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:473:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 473 | for (int i = 0; i < left_extensions.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:476:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 476 | for (int j = 0; j < right_extensions.size(); j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/DeBruijnGraph.cc: In member function 'void DeBruijnGraph::recursively_construct_kmer_extensions(kmer_int_type_t, std::vector&, std::vector >&, char, std::map&, int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:513:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 513 | for (int i = 0; i < adjacent_kmers.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/DeBruijnGraph.cc:527:41: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 527 | if (kmer_extension_chars.size() == flank_extension_length) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 64%] Building CXX object CMakeFiles/GraphFromFasta.dir/analysis/GraphFromFasta.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/GraphFromFasta.dir/analysis/GraphFromFasta.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/GraphFromFasta.cc /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::SetUp(const vecDNAVector&, bool)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:46:20: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 46 | for (j=0; j<=d.size()-m_k; j++) { | ~^~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:56:20: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 56 | for (j=0; j<=d.size()-m_k; j++) { | ~^~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:79:18: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 79 | for (j=0; j<=d.size()-m_k; j++) { | ~^~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::AddData(const vecDNAVector&)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:109:16: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 109 | for (j=0; j<= d.isize()-m_k; j++) { | ~^~~~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::AddData(vecDNAVectorStream&)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:125:9: warning: unused variable 'i' [-Wunused-variable] 125 | int i, j; | ^ [ 66%] Building CXX object CMakeFiles/QuantifyGraph.dir/base/ErrorHandling.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/QuantifyGraph.dir/base/ErrorHandling.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/ErrorHandling.cc [ 67%] Building CXX object CMakeFiles/GraphFromFasta.dir/analysis/KmerTable.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/GraphFromFasta.dir/analysis/KmerTable.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/KmerTable.cc [ 69%] Building CXX object CMakeFiles/GraphFromFasta.dir/analysis/NonRedKmerTable.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/GraphFromFasta.dir/analysis/NonRedKmerTable.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc [ 70%] Building CXX object CMakeFiles/GraphFromFasta.dir/analysis/sequenceUtil.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/GraphFromFasta.dir/analysis/sequenceUtil.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/sequenceUtil.cc /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/ErrorHandling.cc: In function 'void print_trace(FILE*, const char*, int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/ErrorHandling.cc:7:24: warning: unused parameter 'out' [-Wunused-parameter] 7 | void print_trace(FILE *out, const char *file, int line) | ~~~~~~^~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/ErrorHandling.cc:7:41: warning: unused parameter 'file' [-Wunused-parameter] 7 | void print_trace(FILE *out, const char *file, int line) | ~~~~~~~~~~~~^~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/ErrorHandling.cc:7:51: warning: unused parameter 'line' [-Wunused-parameter] 7 | void print_trace(FILE *out, const char *file, int line) | ~~~~^~~~ [ 72%] Building CXX object CMakeFiles/QuantifyGraph.dir/base/FileParser.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/QuantifyGraph.dir/base/FileParser.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/FileParser.cc [ 73%] Building CXX object CMakeFiles/QuantifyGraph.dir/base/StringUtil.cc.o /usr/bin/g++ -I/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -o CMakeFiles/QuantifyGraph.dir/base/StringUtil.cc.o -c /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/base/StringUtil.cc [ 75%] Linking CXX executable CreateIwormFastaBundle /usr/bin/cmake -E cmake_link_script CMakeFiles/CreateIwormFastaBundle.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -lm -ldl -lrt -rdynamic CMakeFiles/CreateIwormFastaBundle.dir/analysis/AACodons.cc.o CMakeFiles/CreateIwormFastaBundle.dir/analysis/CreateIwormFastaBundle.cc.o CMakeFiles/CreateIwormFastaBundle.dir/analysis/DNAVector.cc.o CMakeFiles/CreateIwormFastaBundle.dir/base/ErrorHandling.cc.o CMakeFiles/CreateIwormFastaBundle.dir/base/FileParser.cc.o CMakeFiles/CreateIwormFastaBundle.dir/base/StringUtil.cc.o CMakeFiles/CreateIwormFastaBundle.dir/util/mutil.cc.o -o CreateIwormFastaBundle /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/QuantifyGraph.cc: In function 'int main(int, char**)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/QuantifyGraph.cc:348:8: warning: unused variable 'prevNode' [-Wunused-variable] 348 | int prevNode = parser.AsInt(1); | ^~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/QuantifyGraph.cc:380:7: warning: unused variable 'node' [-Wunused-variable] 380 | int node = parser.AsInt(0); | ^~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/QuantifyGraph.cc:383:16: warning: unused variable 'p2' [-Wunused-variable] 383 | const char * p2 = s.c_str(); | ^~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/QuantifyGraph.cc:313:9: warning: unused variable 'j' [-Wunused-variable] 313 | int i, j; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/QuantifyGraph.cc:326:9: warning: unused variable 'm' [-Wunused-variable] 326 | size_t m = kmers.size(); | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::SetUp(const vecDNAVector&, bool)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:46:20: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 46 | for (j=0; j<=d.size()-m_k; j++) { | ~^~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:56:20: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 56 | for (j=0; j<=d.size()-m_k; j++) { | ~^~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:79:18: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 79 | for (j=0; j<=d.size()-m_k; j++) { | ~^~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::AddData(const vecDNAVector&)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:109:16: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 109 | for (j=0; j<= d.isize()-m_k; j++) { | ~^~~~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc: In member function 'void NonRedKmerTable::AddData(vecDNAVectorStream&)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/NonRedKmerTable.cc:125:9: warning: unused variable 'i' [-Wunused-variable] 125 | int i, j; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/KmerTable.cc: In member function 'long long int KmerSequence::BasesToNumber(const DNAVector&, int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/KmerTable.cc:27:13: warning: unused variable 'i' [-Wunused-variable] 27 | long long i; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/sequenceUtil.cc: In function 'bool contains_non_gatc(std::string)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/sequenceUtil.cc:33:19: warning: array subscript has type 'char' [-Wchar-subscripts] 33 | if (_base_to_int[c] > 3) | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/sequenceUtil.cc: In function 'kmer_int_type_t kmer_to_intval(std::string)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/sequenceUtil.cc:264:25: warning: array subscript has type 'char' [-Wchar-subscripts] 264 | int val = _base_to_int[c]; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/GraphFromFasta.cc: In function 'bool SimpleHalves(const DNAVector&)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/GraphFromFasta.cc:272:15: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 271 | ( (! DISABLE_REPEAT_CHECK) | ~~~~~~~~~~~~~~~~~~~~~~~~ 272 | && | ^~ 273 | is_simple_repeat(left) || is_simple_repeat(right) ) | ~~~~~~~~~~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/GraphFromFasta.cc: In function 'float align_get_per_id(const DNAVector&, const DNAVector&, int, int, int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/GraphFromFasta.cc:351:94: warning: unused parameter 'k' [-Wunused-parameter] 351 | float align_get_per_id(const DNAVector & a, const DNAVector & b, int startA, int startB, int k) | ~~~~^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/GraphFromFasta.cc: In member function 'bool Welder::Weldable(const DNAVector&, int, const DNAVector&, int, int, std::string&, unsigned int&)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/GraphFromFasta.cc:523:13: warning: unused variable 'i' [-Wunused-variable] 523 | int i; | ^ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/GraphFromFasta.cc: In function 'void report_iworm_graph(std::map&, std::map&, std::map&)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/GraphFromFasta.cc:713:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 713 | for (int j = 0; j < adjacent_nodes.size(); j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/GraphFromFasta.cc: In function 'svec sl_cluster_pools(std::map&, std::map&)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/GraphFromFasta.cc:847:40: warning: implicitly-declared 'Pool& Pool::operator=(const Pool&)' is deprecated [-Wdeprecated-copy] 847 | pool_vec[oldpool_id] = tmp; | ^~~ In file included from /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/GraphFromFasta.cc:19: /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/Pool.h:24:5: note: because 'Pool' has user-provided 'Pool::Pool(const Pool&)' 24 | Pool(const Pool& p) { | ^~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/GraphFromFasta.cc: In function 'void add_scaffolds_to_clusters(std::map&, std::string, vecDNAVector&, int, float)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/GraphFromFasta.cc:961:33: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 961 | if (pair_link_count >= minCov) { | ~~~~~~~~~~~~~~~~^~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/GraphFromFasta.cc: In function 'void add_iworm_link(std::map&, int, int)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/GraphFromFasta.cc:1006:55: warning: implicitly-declared 'Pool& Pool::operator=(const Pool&)' is deprecated [-Wdeprecated-copy] 1006 | weld_reinforced_iworm_clusters[iworm_index] = p; | ^ In file included from /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/GraphFromFasta.cc:19: /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/Pool.h:24:5: note: because 'Pool' has user-provided 'Pool::Pool(const Pool&)' 24 | Pool(const Pool& p) { | ^~~~ [ 76%] Linking CXX executable BubbleUpClustering /usr/bin/cmake -E cmake_link_script CMakeFiles/BubbleUpClustering.dir/link.txt --verbose=1 /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/GraphFromFasta.cc: In function 'int main(int, char**)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/GraphFromFasta.cc:1310:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1310 | for (i=0; i&, DNAVector&)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/TranscriptomeGraph.cc:547:16: warning: unused variable 'plusminus' [-Wunused-variable] 547 | static int plusminus = 0; | ^~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/TranscriptomeGraph.cc: In function 'int TranscriptomeGraph(vecDNAVector&, FILE*, int, bool)': /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/TranscriptomeGraph.cc:668:20: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 668 | for (i=0; i<=d.isize()-k; i++) { | ~^~~~~~~~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/TranscriptomeGraph.cc:647:10: warning: unused variable 'bAppend' [-Wunused-variable] 647 | bool bAppend = true; | ^~~~~~~ /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/TranscriptomeGraph.cc: At global scope: /build/trinityrnaseq-2.11.0+dfsg/Chrysalis/analysis/TranscriptomeGraph.cc:547:16: warning: 'plusminus' defined but not used [-Wunused-variable] 547 | static int plusminus = 0; | ^~~~~~~~~ [ 97%] Linking CXX executable QuantifyGraph /usr/bin/cmake -E cmake_link_script CMakeFiles/QuantifyGraph.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -lm -ldl -lrt -rdynamic CMakeFiles/QuantifyGraph.dir/aligns/KmerAlignCore.cc.o CMakeFiles/QuantifyGraph.dir/analysis/AACodons.cc.o CMakeFiles/QuantifyGraph.dir/analysis/DNAVector.cc.o CMakeFiles/QuantifyGraph.dir/analysis/KmerTable.cc.o CMakeFiles/QuantifyGraph.dir/analysis/NonRedKmerTable.cc.o CMakeFiles/QuantifyGraph.dir/analysis/QuantifyGraph.cc.o CMakeFiles/QuantifyGraph.dir/base/ErrorHandling.cc.o CMakeFiles/QuantifyGraph.dir/base/FileParser.cc.o CMakeFiles/QuantifyGraph.dir/base/StringUtil.cc.o CMakeFiles/QuantifyGraph.dir/util/mutil.cc.o -o QuantifyGraph make[4]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' [ 97%] Built target QuantifyGraph [ 98%] Linking CXX executable Chrysalis /usr/bin/cmake -E cmake_link_script CMakeFiles/Chrysalis.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -lm -ldl -lrt -rdynamic CMakeFiles/Chrysalis.dir/aligns/KmerAlignCore.cc.o CMakeFiles/Chrysalis.dir/analysis/AACodons.cc.o CMakeFiles/Chrysalis.dir/analysis/Chrysalis.cc.o CMakeFiles/Chrysalis.dir/analysis/DNAVector.cc.o CMakeFiles/Chrysalis.dir/analysis/TranscriptomeGraph.cc.o CMakeFiles/Chrysalis.dir/base/ErrorHandling.cc.o CMakeFiles/Chrysalis.dir/base/FileParser.cc.o CMakeFiles/Chrysalis.dir/base/StringUtil.cc.o CMakeFiles/Chrysalis.dir/util/mutil.cc.o -o Chrysalis [100%] Linking CXX executable GraphFromFasta /usr/bin/cmake -E cmake_link_script CMakeFiles/GraphFromFasta.dir/link.txt --verbose=1 /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -W -Wall -Wpedantic -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -lm -ldl -lrt -rdynamic CMakeFiles/GraphFromFasta.dir/aligns/KmerAlignCore.cc.o CMakeFiles/GraphFromFasta.dir/analysis/AACodons.cc.o CMakeFiles/GraphFromFasta.dir/analysis/DNAVector.cc.o CMakeFiles/GraphFromFasta.dir/analysis/DeBruijnGraph.cc.o CMakeFiles/GraphFromFasta.dir/analysis/GraphFromFasta.cc.o CMakeFiles/GraphFromFasta.dir/analysis/KmerTable.cc.o CMakeFiles/GraphFromFasta.dir/analysis/NonRedKmerTable.cc.o CMakeFiles/GraphFromFasta.dir/analysis/sequenceUtil.cc.o CMakeFiles/GraphFromFasta.dir/analysis/stacktrace.cc.o CMakeFiles/GraphFromFasta.dir/base/ErrorHandling.cc.o CMakeFiles/GraphFromFasta.dir/base/FileParser.cc.o CMakeFiles/GraphFromFasta.dir/base/StringUtil.cc.o CMakeFiles/GraphFromFasta.dir/util/mutil.cc.o -o GraphFromFasta make[4]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' [100%] Built target Chrysalis make[4]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' [100%] Built target GraphFromFasta make[3]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' /usr/bin/cmake -E cmake_progress_start /build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build/CMakeFiles 0 make[2]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' for target in trinity-plugins/slclust trinity-plugins/scaffold_iworm_contigs trinity-plugins/bamsifter trinity-plugins/seqtk-trinity; do dh_auto_build \ --sourcedirectory=${target}; done cd trinity-plugins/slclust && make -j15 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins/slclust' X=`pwd`; \ for i in src; \ do echo '<<<' $i '>>>'; cd $X/$i; make all; done <<< src >>> make[3]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins/slclust/src' g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -c -o slcluster.o slcluster.cpp g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -c -o graph.o graph.cpp g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -c -o graphnode.o graphnode.cpp g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cmd_line_opts.o cmd_line_opts.cpp g++ -Wl,-z,relro -Wl,-z,now slcluster.o graph.o graphnode.o cmd_line_opts.o -o slclust chmod 755 slclust make[3]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins/slclust/src' make[2]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins/slclust' cd trinity-plugins/scaffold_iworm_contigs && make -j15 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins/scaffold_iworm_contigs' g++ -Wl,-z,relro -Wl,-z,now -I../htslib -L../htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security ScaffoldIwormContigs.cpp error_checker.cpp -lhts -o scaffold_iworm_contigs make[2]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins/scaffold_iworm_contigs' cd trinity-plugins/bamsifter && make -j15 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins/bamsifter' g++ -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -std=c++11 -o bamsifter sift_bam_max_cov.cpp -Wall -O2 -L./htslib/build/lib/ -I./htslib/build/include -lhts make[2]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins/bamsifter' cd trinity-plugins/seqtk-trinity && make -j15 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins/seqtk-trinity' cc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/trinityrnaseq-2.11.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wno-unused-function -Wdate-time -D_FORTIFY_SOURCE=2 seqtk.c -o seqtk-trinity -lz -lm make[2]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins/seqtk-trinity' make[1]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg' jh_build warning: [options] bootstrap class path not set in conjunction with -source 7 Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 1 warning Creating destination directory: "debian/_jh_build.javadoc/api/" ./Butterfly/src/src/My_DFS.java:30: warning - @param argument "roots" is not a parameter name. ./Butterfly/src/src/PairPath.java:124: warning - @param argument "isCircular" is not a parameter name. ./Butterfly/src/src/Read.java:18: warning - @param argument "toV" is not a parameter name. ./Butterfly/src/src/SeqVertex.java:80: warning - @param argument "nextID" is not a parameter name. ./Butterfly/src/src/SeqVertex.java:81: warning - @param argument "l" is not a parameter name. ./Butterfly/src/src/SeqVertex.java:155: warning - @param argument "_origButterflyID" is not a parameter name. ./Butterfly/src/src/SeqVertex.java:766: warning - @param argument "name" is not a parameter name. ./Butterfly/src/src/SeqVertex.java:767: warning - @param argument "weight" is not a parameter name. ./Butterfly/src/src/SeqVertex.java:768: warning - @param argument "name2" is not a parameter name. ./Butterfly/src/src/SeqVertex.java:769: warning - @param argument "weight2" is not a parameter name. ./Butterfly/src/src/TransAssembly_allProbPaths.java:15040: warning - @param argument "candidateNodes" is not a parameter name. ./Butterfly/src/src/TransAssembly_allProbPaths.java:15041: warning - @param argument "l" is not a parameter name. 12 warnings debian/rules override_dh_auto_test make[1]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg' java -cp Butterfly.jar TransAssembly_allProbPaths -N 10000 -L 300 \ -F 300 -C Butterfly/src/sample_data/c1.graph --stderr -V 20 Started using Path alignment for path comparisons combine paths if (identity=(numberOfMatches/shorterLen) > 98.0% or if we have <= 2 mismatches) and if we have internal gap lengths <= 10 path reinforcement distance computed based on 25% of max pair distance: 300 = 75 bases SECTION ================ Parsing de Bruijn graph ====================== preProcessGraphFile: Butterfly/src/sample_data/c1.graph.out SECTION ================== buildNewGraph ======================== buildNewGraphFirstLetter: Butterfly/src/sample_data/c1.graph.out KMER_SIZE=24 [17] [34] [51] [68] [85] [102] [119] [136] [153] [170] [187] [204] [221] [238] [255] [272] [289] [306] [323] [340] [357] [374] [391] [408] [425] [442] [459] [476] [493] Graph is built NODE_DESCR: GGCCACACGATGGCTTATCACGTC:W0(V380_D-1) Preds: [] Succ: [C:W-1(V381_D-1) ] NODE_DESCR: C:W-1(V381_D-1) Preds: [GGCCACACGATGGCTTATCACGTC:W0(V380_D-1) ] Succ: [A:W-1(V382_D-1) ] NODE_DESCR: A:W-1(V382_D-1) Preds: [C:W-1(V381_D-1) ] Succ: [C:W-1(V383_D-1) ] NODE_DESCR: C:W-1(V383_D-1) Preds: [A:W-1(V382_D-1) ] Succ: [A:W-1(V384_D-1) ] NODE_DESCR: A:W-1(V384_D-1) Preds: [C:W-1(V383_D-1) ] Succ: [T:W-1(V385_D-1) ] NODE_DESCR: T:W-1(V385_D-1) Preds: [A:W-1(V384_D-1) ] Succ: [T:W-1(V386_D-1) ] NODE_DESCR: T:W-1(V386_D-1) Preds: [T:W-1(V385_D-1) ] Succ: [T:W-1(V387_D-1) ] NODE_DESCR: T:W-1(V387_D-1) Preds: [T:W-1(V386_D-1) ] Succ: [C:W-1(V388_D-1) ] NODE_DESCR: C:W-1(V388_D-1) Preds: [T:W-1(V387_D-1) ] Succ: [T:W-1(V389_D-1) ] NODE_DESCR: T:W-1(V389_D-1) Preds: [C:W-1(V388_D-1) ] Succ: [A:W-1(V390_D-1) ] NODE_DESCR: A:W-1(V390_D-1) Preds: [T:W-1(V389_D-1) ] Succ: [C:W-1(V391_D-1) ] NODE_DESCR: C:W-1(V391_D-1) Preds: [A:W-1(V390_D-1) ] Succ: [T:W-1(V392_D-1) ] NODE_DESCR: T:W-1(V392_D-1) Preds: [C:W-1(V391_D-1) ] Succ: [G:W-1(V393_D-1) ] NODE_DESCR: G:W-1(V393_D-1) Preds: [T:W-1(V392_D-1) ] Succ: [G:W-1(V394_D-1) ] NODE_DESCR: G:W-1(V394_D-1) Preds: [G:W-1(V393_D-1) ] Succ: [C:W-1(V395_D-1) ] NODE_DESCR: C:W-1(V395_D-1) Preds: [G:W-1(V394_D-1) ] Succ: [T:W-1(V396_D-1) ] NODE_DESCR: T:W-1(V396_D-1) Preds: [C:W-1(V395_D-1) ] Succ: [A:W-1(V397_D-1) ] NODE_DESCR: A:W-1(V397_D-1) Preds: [T:W-1(V396_D-1) ] Succ: [C:W-1(V398_D-1) ] NODE_DESCR: C:W-1(V398_D-1) Preds: [A:W-1(V397_D-1) ] Succ: [A:W-1(V399_D-1) ] NODE_DESCR: A:W-1(V399_D-1) Preds: [C:W-1(V398_D-1) ] Succ: [A:W-1(V400_D-1) ] NODE_DESCR: A:W-1(V400_D-1) Preds: [A:W-1(V399_D-1) ] Succ: [A:W-1(V401_D-1) ] NODE_DESCR: A:W-1(V401_D-1) Preds: [A:W-1(V400_D-1) ] Succ: [C:W-1(V402_D-1) ] NODE_DESCR: C:W-1(V402_D-1) Preds: [A:W-1(V401_D-1) ] Succ: [A:W-1(V403_D-1) ] NODE_DESCR: A:W-1(V403_D-1) Preds: [C:W-1(V402_D-1) ] Succ: [G:W-1(V404_D-1) ] NODE_DESCR: G:W-1(V404_D-1) Preds: [A:W-1(V403_D-1) ] Succ: [A:W-1(V405_D-1) ] NODE_DESCR: A:W-1(V405_D-1) Preds: [G:W-1(V404_D-1) ] Succ: [C:W-1(V406_D-1) ] NODE_DESCR: C:W-1(V406_D-1) Preds: [A:W-1(V405_D-1) ] Succ: [T:W-1(V407_D-1) ] NODE_DESCR: T:W-1(V407_D-1) Preds: [C:W-1(V406_D-1) ] Succ: [T:W-1(V408_D-1) ] NODE_DESCR: T:W-1(V408_D-1) Preds: [T:W-1(V407_D-1) ] Succ: [C:W-1(V409_D-1) ] NODE_DESCR: C:W-1(V409_D-1) Preds: [T:W-1(V408_D-1) ] Succ: [C:W-1(V410_D-1) ] NODE_DESCR: C:W-1(V410_D-1) Preds: [C:W-1(V409_D-1) ] Succ: [T:W-1(V411_D-1) ] NODE_DESCR: T:W-1(V411_D-1) Preds: [C:W-1(V410_D-1) ] Succ: [C:W-1(V412_D-1) ] NODE_DESCR: C:W-1(V412_D-1) Preds: [T:W-1(V411_D-1) ] Succ: [A:W-1(V413_D-1) ] NODE_DESCR: A:W-1(V413_D-1) Preds: [C:W-1(V412_D-1) ] Succ: [A:W-1(V414_D-1) ] NODE_DESCR: A:W-1(V414_D-1) Preds: [A:W-1(V413_D-1) ] Succ: [G:W-1(V415_D-1) ] NODE_DESCR: G:W-1(V415_D-1) Preds: [A:W-1(V414_D-1) ] Succ: [C:W-1(V416_D-1) G:W-1(V885_D-1) ] NODE_DESCR: C:W-1(V416_D-1) Preds: [G:W-1(V415_D-1) ] Succ: [C:W-1(V417_D-1) ] NODE_DESCR: C:W-1(V417_D-1) Preds: [C:W-1(V416_D-1) ] Succ: [T:W-1(V418_D-1) ] NODE_DESCR: T:W-1(V418_D-1) Preds: [C:W-1(V417_D-1) ] Succ: [C:W-1(V419_D-1) ] NODE_DESCR: C:W-1(V419_D-1) Preds: [T:W-1(V418_D-1) ] Succ: [A:W-1(V420_D-1) ] NODE_DESCR: A:W-1(V420_D-1) Preds: [C:W-1(V419_D-1) ] Succ: [T:W-1(V421_D-1) ] NODE_DESCR: T:W-1(V421_D-1) Preds: [A:W-1(V420_D-1) ] Succ: [C:W-1(V422_D-1) ] NODE_DESCR: C:W-1(V422_D-1) Preds: [T:W-1(V421_D-1) ] Succ: [A:W-1(V423_D-1) ] NODE_DESCR: A:W-1(V423_D-1) Preds: [C:W-1(V422_D-1) ] Succ: [G:W-1(V424_D-1) ] NODE_DESCR: G:W-1(V424_D-1) Preds: [A:W-1(V423_D-1) ] Succ: [C:W-1(V425_D-1) ] NODE_DESCR: C:W-1(V425_D-1) Preds: [G:W-1(V424_D-1) ] Succ: [A:W-1(V426_D-1) ] NODE_DESCR: A:W-1(V426_D-1) Preds: [C:W-1(V425_D-1) ] Succ: [A:W-1(V427_D-1) ] NODE_DESCR: A:W-1(V427_D-1) Preds: [A:W-1(V426_D-1) ] Succ: [G:W-1(V428_D-1) ] NODE_DESCR: G:W-1(V428_D-1) Preds: [A:W-1(V427_D-1) ] Succ: [A:W-1(V429_D-1) ] NODE_DESCR: A:W-1(V429_D-1) Preds: [G:W-1(V428_D-1) ] Succ: [A:W-1(V430_D-1) ] NODE_DESCR: A:W-1(V430_D-1) Preds: [A:W-1(V429_D-1) ] Succ: [G:W-1(V431_D-1) ] NODE_DESCR: G:W-1(V431_D-1) Preds: [A:W-1(V430_D-1) ] Succ: [A:W-1(V432_D-1) ] NODE_DESCR: A:W-1(V432_D-1) Preds: [G:W-1(V431_D-1) ] Succ: [A:W-1(V433_D-1) ] NODE_DESCR: A:W-1(V433_D-1) Preds: [A:W-1(V432_D-1) ] Succ: [A:W-1(V434_D-1) ] NODE_DESCR: A:W-1(V434_D-1) Preds: [A:W-1(V433_D-1) ] Succ: [T:W-1(V435_D-1) ] NODE_DESCR: T:W-1(V435_D-1) Preds: [A:W-1(V434_D-1) ] Succ: [C:W-1(V436_D-1) ] NODE_DESCR: C:W-1(V436_D-1) Preds: [T:W-1(V435_D-1) ] Succ: [T:W-1(V437_D-1) ] NODE_DESCR: T:W-1(V437_D-1) Preds: [C:W-1(V436_D-1) ] Succ: [T:W-1(V438_D-1) ] NODE_DESCR: T:W-1(V438_D-1) Preds: [T:W-1(V437_D-1) ] Succ: [T:W-1(V439_D-1) ] NODE_DESCR: T:W-1(V439_D-1) Preds: [T:W-1(V438_D-1) ] Succ: [C:W-1(V440_D-1) ] NODE_DESCR: C:W-1(V440_D-1) Preds: [T:W-1(V439_D-1) T:W-1(V908_D-1) ] Succ: [T:W-1(V441_D-1) ] NODE_DESCR: T:W-1(V441_D-1) Preds: [C:W-1(V440_D-1) ] Succ: [T:W-1(V442_D-1) ] NODE_DESCR: T:W-1(V442_D-1) Preds: [T:W-1(V441_D-1) ] Succ: [T:W-1(V443_D-1) ] NODE_DESCR: T:W-1(V443_D-1) Preds: [T:W-1(V442_D-1) ] Succ: [C:W-1(V444_D-1) ] NODE_DESCR: C:W-1(V444_D-1) Preds: [T:W-1(V443_D-1) ] Succ: [C:W-1(V445_D-1) ] NODE_DESCR: C:W-1(V445_D-1) Preds: [C:W-1(V444_D-1) ] Succ: [A:W-1(V446_D-1) ] NODE_DESCR: A:W-1(V446_D-1) Preds: [C:W-1(V445_D-1) ] Succ: [A:W-1(V447_D-1) ] NODE_DESCR: A:W-1(V447_D-1) Preds: [A:W-1(V446_D-1) ] Succ: [G:W-1(V448_D-1) ] NODE_DESCR: G:W-1(V448_D-1) Preds: [A:W-1(V447_D-1) ] Succ: [T:W-1(V449_D-1) ] NODE_DESCR: T:W-1(V449_D-1) Preds: [G:W-1(V448_D-1) ] Succ: [A:W-1(V450_D-1) ] NODE_DESCR: A:W-1(V450_D-1) Preds: [T:W-1(V449_D-1) ] Succ: [G:W-1(V451_D-1) ] NODE_DESCR: G:W-1(V451_D-1) Preds: [A:W-1(V450_D-1) A:W-1(V980_D-1) ] Succ: [T:W-1(V452_D-1) ] NODE_DESCR: T:W-1(V452_D-1) Preds: [G:W-1(V451_D-1) ] Succ: [G:W-1(V453_D-1) ] NODE_DESCR: G:W-1(V453_D-1) Preds: [T:W-1(V452_D-1) ] Succ: [T:W-1(V454_D-1) ] NODE_DESCR: T:W-1(V454_D-1) Preds: [G:W-1(V453_D-1) ] Succ: [C:W-1(V455_D-1) ] NODE_DESCR: C:W-1(V455_D-1) Preds: [T:W-1(V454_D-1) ] Succ: [T:W-1(V456_D-1) ] NODE_DESCR: T:W-1(V456_D-1) Preds: [C:W-1(V455_D-1) ] Succ: [T:W-1(V457_D-1) ] NODE_DESCR: T:W-1(V457_D-1) Preds: [T:W-1(V456_D-1) ] Succ: [A:W-1(V458_D-1) ] NODE_DESCR: A:W-1(V458_D-1) Preds: [T:W-1(V457_D-1) ] Succ: [A:W-1(V459_D-1) ] NODE_DESCR: A:W-1(V459_D-1) Preds: [A:W-1(V458_D-1) ] Succ: [C:W-1(V460_D-1) ] NODE_DESCR: C:W-1(V460_D-1) Preds: [A:W-1(V459_D-1) ] Succ: [T:W-1(V461_D-1) ] NODE_DESCR: T:W-1(V461_D-1) Preds: [C:W-1(V460_D-1) ] Succ: [C:W-1(V462_D-1) ] NODE_DESCR: C:W-1(V462_D-1) Preds: [T:W-1(V461_D-1) ] Succ: [A:W-1(V463_D-1) ] NODE_DESCR: A:W-1(V463_D-1) Preds: [C:W-1(V462_D-1) ] Succ: [G:W-1(V464_D-1) ] NODE_DESCR: G:W-1(V464_D-1) Preds: [A:W-1(V463_D-1) ] Succ: [G:W-1(V465_D-1) ] NODE_DESCR: G:W-1(V465_D-1) Preds: [G:W-1(V464_D-1) ] Succ: [A:W-1(V466_D-1) ] NODE_DESCR: A:W-1(V466_D-1) Preds: [G:W-1(V465_D-1) ] Succ: [G:W-1(V467_D-1) ] NODE_DESCR: G:W-1(V467_D-1) Preds: [A:W-1(V466_D-1) ] Succ: [A:W-1(V468_D-1) ] NODE_DESCR: A:W-1(V468_D-1) Preds: [G:W-1(V467_D-1) ] Succ: [T:W-1(V469_D-1) ] NODE_DESCR: T:W-1(V469_D-1) Preds: [A:W-1(V468_D-1) ] Succ: [C:W-1(V470_D-1) ] NODE_DESCR: C:W-1(V470_D-1) Preds: [T:W-1(V469_D-1) ] Succ: [A:W-1(V471_D-1) ] NODE_DESCR: A:W-1(V471_D-1) Preds: [C:W-1(V470_D-1) ] Succ: [T:W-1(V472_D-1) ] NODE_DESCR: T:W-1(V472_D-1) Preds: [A:W-1(V471_D-1) ] Succ: [G:W-1(V473_D-1) ] NODE_DESCR: G:W-1(V473_D-1) Preds: [T:W-1(V472_D-1) ] Succ: [G:W-1(V474_D-1) ] NODE_DESCR: G:W-1(V474_D-1) Preds: [G:W-1(V473_D-1) ] Succ: [T:W-1(V475_D-1) ] NODE_DESCR: T:W-1(V475_D-1) Preds: [G:W-1(V474_D-1) ] Succ: [A:W-1(V476_D-1) ] NODE_DESCR: A:W-1(V476_D-1) Preds: [T:W-1(V475_D-1) ] Succ: [G:W-1(V477_D-1) ] NODE_DESCR: G:W-1(V477_D-1) Preds: [A:W-1(V476_D-1) ] Succ: [G:W-1(V478_D-1) ] NODE_DESCR: G:W-1(V478_D-1) Preds: [G:W-1(V477_D-1) ] Succ: [G:W-1(V479_D-1) ] NODE_DESCR: G:W-1(V479_D-1) Preds: [G:W-1(V478_D-1) ] Succ: [A:W-1(V480_D-1) ] NODE_DESCR: A:W-1(V480_D-1) Preds: [G:W-1(V479_D-1) ] Succ: [A:W-1(V481_D-1) ] NODE_DESCR: A:W-1(V481_D-1) Preds: [A:W-1(V480_D-1) ] Succ: [G:W-1(V482_D-1) ] NODE_DESCR: G:W-1(V482_D-1) Preds: [A:W-1(V481_D-1) ] Succ: [G:W-1(V483_D-1) ] NODE_DESCR: G:W-1(V483_D-1) Preds: [G:W-1(V482_D-1) ] Succ: [G:W-1(V484_D-1) ] NODE_DESCR: G:W-1(V484_D-1) Preds: [G:W-1(V483_D-1) ] Succ: [G:W-1(V485_D-1) ] NODE_DESCR: G:W-1(V485_D-1) Preds: [G:W-1(V484_D-1) ] Succ: [T:W-1(V486_D-1) ] NODE_DESCR: T:W-1(V486_D-1) Preds: [G:W-1(V485_D-1) ] Succ: [C:W-1(V487_D-1) ] NODE_DESCR: C:W-1(V487_D-1) Preds: [T:W-1(V486_D-1) ] Succ: [A:W-1(V488_D-1) ] NODE_DESCR: A:W-1(V488_D-1) Preds: [C:W-1(V487_D-1) ] Succ: [G:W-1(V489_D-1) ] NODE_DESCR: G:W-1(V489_D-1) Preds: [A:W-1(V488_D-1) ] Succ: [G:W-1(V490_D-1) ] NODE_DESCR: G:W-1(V490_D-1) Preds: [G:W-1(V489_D-1) ] Succ: [C:W-1(V491_D-1) ] NODE_DESCR: C:W-1(V491_D-1) Preds: [G:W-1(V490_D-1) ] Succ: [C:W-1(V492_D-1) ] NODE_DESCR: C:W-1(V492_D-1) Preds: [C:W-1(V491_D-1) ] Succ: [A:W-1(V493_D-1) ] NODE_DESCR: A:W-1(V493_D-1) Preds: [C:W-1(V492_D-1) ] Succ: [C:W-1(V494_D-1) ] NODE_DESCR: C:W-1(V494_D-1) Preds: [A:W-1(V493_D-1) ] Succ: [T:W-1(V495_D-1) ] NODE_DESCR: T:W-1(V495_D-1) Preds: [C:W-1(V494_D-1) ] Succ: [T:W-1(V496_D-1) ] NODE_DESCR: T:W-1(V496_D-1) Preds: [T:W-1(V495_D-1) ] Succ: [C:W-1(V497_D-1) ] NODE_DESCR: C:W-1(V497_D-1) Preds: [T:W-1(V496_D-1) ] Succ: [A:W-1(V498_D-1) ] NODE_DESCR: A:W-1(V498_D-1) Preds: [C:W-1(V497_D-1) ] Succ: [C:W-1(V499_D-1) ] NODE_DESCR: C:W-1(V499_D-1) Preds: [A:W-1(V498_D-1) ] Succ: [A:W-1(V500_D-1) ] NODE_DESCR: A:W-1(V500_D-1) Preds: [C:W-1(V499_D-1) ] Succ: [A:W-1(V501_D-1) ] NODE_DESCR: A:W-1(V501_D-1) Preds: [A:W-1(V500_D-1) ] Succ: [G:W-1(V502_D-1) ] NODE_DESCR: G:W-1(V502_D-1) Preds: [A:W-1(V501_D-1) ] Succ: [G:W-1(V503_D-1) ] NODE_DESCR: G:W-1(V503_D-1) Preds: [G:W-1(V502_D-1) ] Succ: [A:W-1(V504_D-1) ] NODE_DESCR: A:W-1(V504_D-1) Preds: [G:W-1(V503_D-1) ] Succ: [G:W-1(V505_D-1) ] NODE_DESCR: G:W-1(V505_D-1) Preds: [A:W-1(V504_D-1) ] Succ: [C:W-1(V506_D-1) ] NODE_DESCR: C:W-1(V506_D-1) Preds: [G:W-1(V505_D-1) ] Succ: [A:W-1(V507_D-1) ] NODE_DESCR: A:W-1(V507_D-1) Preds: [C:W-1(V506_D-1) ] Succ: [G:W-1(V508_D-1) ] NODE_DESCR: G:W-1(V508_D-1) Preds: [A:W-1(V507_D-1) ] Succ: [A:W-1(V509_D-1) ] NODE_DESCR: A:W-1(V509_D-1) Preds: [G:W-1(V508_D-1) ] Succ: [G:W-1(V510_D-1) ] NODE_DESCR: G:W-1(V510_D-1) Preds: [A:W-1(V509_D-1) ] Succ: [T:W-1(V511_D-1) ] NODE_DESCR: T:W-1(V511_D-1) Preds: [G:W-1(V510_D-1) ] Succ: [T:W-1(V512_D-1) ] NODE_DESCR: T:W-1(V512_D-1) Preds: [T:W-1(V511_D-1) ] Succ: [A:W-1(V513_D-1) ] NODE_DESCR: A:W-1(V513_D-1) Preds: [T:W-1(V512_D-1) ] Succ: [G:W-1(V514_D-1) ] NODE_DESCR: G:W-1(V514_D-1) Preds: [A:W-1(V513_D-1) ] Succ: [G:W-1(V515_D-1) ] NODE_DESCR: G:W-1(V515_D-1) Preds: [G:W-1(V514_D-1) ] Succ: [A:W-1(V516_D-1) ] NODE_DESCR: A:W-1(V516_D-1) Preds: [G:W-1(V515_D-1) ] Succ: [A:W-1(V517_D-1) ] NODE_DESCR: A:W-1(V517_D-1) Preds: [A:W-1(V516_D-1) ] Succ: [G:W-1(V518_D-1) ] NODE_DESCR: G:W-1(V518_D-1) Preds: [A:W-1(V517_D-1) ] Succ: [C:W-1(V519_D-1) ] NODE_DESCR: C:W-1(V519_D-1) Preds: [G:W-1(V518_D-1) ] Succ: [T:W-1(V520_D-1) ] NODE_DESCR: T:W-1(V520_D-1) Preds: [C:W-1(V519_D-1) ] Succ: [C:W-1(V521_D-1) ] NODE_DESCR: C:W-1(V521_D-1) Preds: [T:W-1(V520_D-1) ] Succ: [C:W-1(V522_D-1) ] NODE_DESCR: C:W-1(V522_D-1) Preds: [C:W-1(V521_D-1) ] Succ: [C:W-1(V523_D-1) ] NODE_DESCR: C:W-1(V523_D-1) Preds: [C:W-1(V522_D-1) ] Succ: [T:W-1(V524_D-1) ] NODE_DESCR: T:W-1(V524_D-1) Preds: [C:W-1(V523_D-1) ] Succ: [G:W-1(V525_D-1) C:W-1(V813_D-1) ] NODE_DESCR: G:W-1(V525_D-1) Preds: [T:W-1(V524_D-1) ] Succ: [A:W-1(V526_D-1) ] NODE_DESCR: A:W-1(V526_D-1) Preds: [G:W-1(V525_D-1) ] Succ: [G:W-1(V527_D-1) ] NODE_DESCR: G:W-1(V527_D-1) Preds: [A:W-1(V526_D-1) ] Succ: [C:W-1(V528_D-1) ] NODE_DESCR: C:W-1(V528_D-1) Preds: [G:W-1(V527_D-1) ] Succ: [A:W-1(V529_D-1) ] NODE_DESCR: A:W-1(V529_D-1) Preds: [C:W-1(V528_D-1) ] Succ: [C:W-1(V530_D-1) ] NODE_DESCR: C:W-1(V530_D-1) Preds: [A:W-1(V529_D-1) ] Succ: [T:W-1(V531_D-1) ] NODE_DESCR: T:W-1(V531_D-1) Preds: [C:W-1(V530_D-1) ] Succ: [C:W-1(V532_D-1) ] NODE_DESCR: C:W-1(V532_D-1) Preds: [T:W-1(V531_D-1) ] Succ: [T:W-1(V533_D-1) ] NODE_DESCR: T:W-1(V533_D-1) Preds: [C:W-1(V532_D-1) ] Succ: [G:W-1(V534_D-1) ] NODE_DESCR: G:W-1(V534_D-1) Preds: [T:W-1(V533_D-1) ] Succ: [A:W-1(V535_D-1) ] NODE_DESCR: A:W-1(V535_D-1) Preds: [G:W-1(V534_D-1) ] Succ: [A:W-1(V536_D-1) ] NODE_DESCR: A:W-1(V536_D-1) Preds: [A:W-1(V535_D-1) ] Succ: [C:W-1(V537_D-1) ] NODE_DESCR: C:W-1(V537_D-1) Preds: [A:W-1(V536_D-1) ] Succ: [C:W-1(V538_D-1) ] NODE_DESCR: C:W-1(V538_D-1) Preds: [C:W-1(V537_D-1) ] Succ: [C:W-1(V539_D-1) ] NODE_DESCR: C:W-1(V539_D-1) Preds: [C:W-1(V538_D-1) ] Succ: [T:W-1(V540_D-1) ] NODE_DESCR: T:W-1(V540_D-1) Preds: [C:W-1(V539_D-1) ] Succ: [G:W-1(V541_D-1) ] NODE_DESCR: G:W-1(V541_D-1) Preds: [T:W-1(V540_D-1) ] Succ: [T:W-1(V542_D-1) ] NODE_DESCR: T:W-1(V542_D-1) Preds: [G:W-1(V541_D-1) ] Succ: [G:W-1(V543_D-1) ] NODE_DESCR: G:W-1(V543_D-1) Preds: [T:W-1(V542_D-1) ] Succ: [A:W-1(V544_D-1) ] NODE_DESCR: A:W-1(V544_D-1) Preds: [G:W-1(V543_D-1) ] Succ: [G:W-1(V545_D-1) ] NODE_DESCR: G:W-1(V545_D-1) Preds: [A:W-1(V544_D-1) ] Succ: [G:W-1(V546_D-1) ] NODE_DESCR: G:W-1(V546_D-1) Preds: [G:W-1(V545_D-1) ] Succ: [C:W-1(V547_D-1) ] NODE_DESCR: C:W-1(V547_D-1) Preds: [G:W-1(V546_D-1) ] Succ: [A:W-1(V548_D-1) ] NODE_DESCR: A:W-1(V548_D-1) Preds: [C:W-1(V547_D-1) ] Succ: [A:W-1(V549_D-1) ] NODE_DESCR: A:W-1(V549_D-1) Preds: [A:W-1(V548_D-1) A:W-1(V836_D-1) ] Succ: [G:W-1(V550_D-1) ] NODE_DESCR: G:W-1(V550_D-1) Preds: [A:W-1(V549_D-1) ] Succ: [T:W-1(V551_D-1) ] NODE_DESCR: T:W-1(V551_D-1) Preds: [G:W-1(V550_D-1) ] Succ: [C:W-1(V552_D-1) ] NODE_DESCR: C:W-1(V552_D-1) Preds: [T:W-1(V551_D-1) ] Succ: [C:W-1(V553_D-1) ] NODE_DESCR: C:W-1(V553_D-1) Preds: [C:W-1(V552_D-1) ] Succ: [A:W-1(V554_D-1) ] NODE_DESCR: A:W-1(V554_D-1) Preds: [C:W-1(V553_D-1) ] Succ: [C:W-1(V555_D-1) ] NODE_DESCR: C:W-1(V555_D-1) Preds: [A:W-1(V554_D-1) ] Succ: [C:W-1(V556_D-1) ] NODE_DESCR: C:W-1(V556_D-1) Preds: [C:W-1(V555_D-1) ] Succ: [A:W-1(V557_D-1) ] NODE_DESCR: A:W-1(V557_D-1) Preds: [C:W-1(V556_D-1) ] Succ: [C:W-1(V558_D-1) ] NODE_DESCR: C:W-1(V558_D-1) Preds: [A:W-1(V557_D-1) ] Succ: [C:W-1(V559_D-1) ] NODE_DESCR: C:W-1(V559_D-1) Preds: [C:W-1(V558_D-1) ] Succ: [A:W-1(V560_D-1) ] NODE_DESCR: A:W-1(V560_D-1) Preds: [C:W-1(V559_D-1) ] Succ: [G:W-1(V561_D-1) ] NODE_DESCR: G:W-1(V561_D-1) Preds: [A:W-1(V560_D-1) ] Succ: [C:W-1(V562_D-1) ] NODE_DESCR: C:W-1(V562_D-1) Preds: [G:W-1(V561_D-1) ] Succ: [G:W-1(V563_D-1) ] NODE_DESCR: G:W-1(V563_D-1) Preds: [C:W-1(V562_D-1) ] Succ: [T:W-1(V564_D-1) ] NODE_DESCR: T:W-1(V564_D-1) Preds: [G:W-1(V563_D-1) ] Succ: [A:W-1(V565_D-1) ] NODE_DESCR: A:W-1(V565_D-1) Preds: [T:W-1(V564_D-1) ] Succ: [T:W-1(V566_D-1) ] NODE_DESCR: T:W-1(V566_D-1) Preds: [A:W-1(V565_D-1) ] Succ: [C:W-1(V567_D-1) ] NODE_DESCR: C:W-1(V567_D-1) Preds: [T:W-1(V566_D-1) ] Succ: [T:W-1(V568_D-1) ] NODE_DESCR: T:W-1(V568_D-1) Preds: [C:W-1(V567_D-1) ] Succ: [A:W-1(V569_D-1) ] NODE_DESCR: A:W-1(V569_D-1) Preds: [T:W-1(V568_D-1) ] Succ: [G:W-1(V570_D-1) ] NODE_DESCR: G:W-1(V570_D-1) Preds: [A:W-1(V569_D-1) ] Succ: [A:W-1(V571_D-1) ] NODE_DESCR: A:W-1(V571_D-1) Preds: [G:W-1(V570_D-1) ] Succ: [C:W-1(V572_D-1) ] NODE_DESCR: C:W-1(V572_D-1) Preds: [A:W-1(V571_D-1) ] Succ: [C:W-1(V573_D-1) ] NODE_DESCR: C:W-1(V573_D-1) Preds: [C:W-1(V572_D-1) ] Succ: [C:W-1(V574_D-1) ] NODE_DESCR: C:W-1(V574_D-1) Preds: [C:W-1(V573_D-1) ] Succ: [A:W-1(V575_D-1) ] NODE_DESCR: A:W-1(V575_D-1) Preds: [C:W-1(V574_D-1) ] Succ: [G:W-1(V576_D-1) ] NODE_DESCR: G:W-1(V576_D-1) Preds: [A:W-1(V575_D-1) ] Succ: [G:W-1(V577_D-1) ] NODE_DESCR: G:W-1(V577_D-1) Preds: [G:W-1(V576_D-1) ] Succ: [C:W-1(V578_D-1) ] NODE_DESCR: C:W-1(V578_D-1) Preds: [G:W-1(V577_D-1) ] Succ: [C:W-1(V579_D-1) ] NODE_DESCR: C:W-1(V579_D-1) Preds: [C:W-1(V578_D-1) ] Succ: [A:W-1(V580_D-1) ] NODE_DESCR: A:W-1(V580_D-1) Preds: [C:W-1(V579_D-1) ] Succ: [T:W-1(V581_D-1) ] NODE_DESCR: T:W-1(V581_D-1) Preds: [A:W-1(V580_D-1) ] Succ: [C:W-1(V582_D-1) ] NODE_DESCR: C:W-1(V582_D-1) Preds: [T:W-1(V581_D-1) ] Succ: [T:W-1(V583_D-1) ] NODE_DESCR: T:W-1(V583_D-1) Preds: [C:W-1(V582_D-1) ] Succ: [A:W-1(V584_D-1) ] NODE_DESCR: A:W-1(V584_D-1) Preds: [T:W-1(V583_D-1) ] Succ: [A:W-1(V585_D-1) ] NODE_DESCR: A:W-1(V585_D-1) Preds: [A:W-1(V584_D-1) ] Succ: [T:W-1(V586_D-1) ] NODE_DESCR: T:W-1(V586_D-1) Preds: [A:W-1(V585_D-1) ] Succ: [A:W-1(V587_D-1) ] NODE_DESCR: A:W-1(V587_D-1) Preds: [T:W-1(V586_D-1) ] Succ: [A:W-1(V588_D-1) ] NODE_DESCR: A:W-1(V588_D-1) Preds: [A:W-1(V587_D-1) ] Succ: [A:W-1(V589_D-1) ] NODE_DESCR: A:W-1(V589_D-1) Preds: [A:W-1(V588_D-1) ] Succ: [G:W-1(V590_D-1) ] NODE_DESCR: G:W-1(V590_D-1) Preds: [A:W-1(V589_D-1) ] Succ: [G:W-1(V591_D-1) ] NODE_DESCR: G:W-1(V591_D-1) Preds: [G:W-1(V590_D-1) ] Succ: [A:W-1(V592_D-1) ] NODE_DESCR: A:W-1(V592_D-1) Preds: [G:W-1(V591_D-1) ] Succ: [A:W-1(V593_D-1) ] NODE_DESCR: A:W-1(V593_D-1) Preds: [A:W-1(V592_D-1) ] Succ: [A:W-1(V594_D-1) ] NODE_DESCR: A:W-1(V594_D-1) Preds: [A:W-1(V593_D-1) ] Succ: [A:W-1(V595_D-1) ] NODE_DESCR: A:W-1(V595_D-1) Preds: [A:W-1(V594_D-1) ] Succ: [C:W-1(V596_D-1) ] NODE_DESCR: C:W-1(V596_D-1) Preds: [A:W-1(V595_D-1) ] Succ: [T:W-1(V597_D-1) ] NODE_DESCR: T:W-1(V597_D-1) Preds: [C:W-1(V596_D-1) ] Succ: [G:W-1(V598_D-1) ] NODE_DESCR: G:W-1(V598_D-1) Preds: [T:W-1(V597_D-1) ] Succ: [C:W-1(V599_D-1) ] NODE_DESCR: C:W-1(V599_D-1) Preds: [G:W-1(V598_D-1) ] Succ: [A:W-1(V600_D-1) ] NODE_DESCR: A:W-1(V600_D-1) Preds: [C:W-1(V599_D-1) ] Succ: [T:W-1(V601_D-1) ] NODE_DESCR: T:W-1(V601_D-1) Preds: [A:W-1(V600_D-1) ] Succ: [C:W-1(V602_D-1) ] NODE_DESCR: C:W-1(V602_D-1) Preds: [T:W-1(V601_D-1) ] Succ: [T:W-1(V603_D-1) ] NODE_DESCR: T:W-1(V603_D-1) Preds: [C:W-1(V602_D-1) ] Succ: [T:W-1(V604_D-1) ] NODE_DESCR: T:W-1(V604_D-1) Preds: [T:W-1(V603_D-1) ] Succ: [T:W-1(V605_D-1) ] NODE_DESCR: T:W-1(V605_D-1) Preds: [T:W-1(V604_D-1) ] Succ: [G:W-1(V606_D-1) ] NODE_DESCR: G:W-1(V606_D-1) Preds: [T:W-1(V605_D-1) ] Succ: [C:W-1(V607_D-1) ] NODE_DESCR: C:W-1(V607_D-1) Preds: [G:W-1(V606_D-1) ] Succ: [C:W-1(V608_D-1) ] NODE_DESCR: C:W-1(V608_D-1) Preds: [C:W-1(V607_D-1) ] Succ: [C:W-1(V609_D-1) ] NODE_DESCR: C:W-1(V609_D-1) Preds: [C:W-1(V608_D-1) ] Succ: [A:W-1(V610_D-1) ] NODE_DESCR: A:W-1(V610_D-1) Preds: [C:W-1(V609_D-1) ] Succ: [C:W-1(V611_D-1) ] NODE_DESCR: C:W-1(V611_D-1) Preds: [A:W-1(V610_D-1) ] Succ: [A:W-1(V612_D-1) ] NODE_DESCR: A:W-1(V612_D-1) Preds: [C:W-1(V611_D-1) ] Succ: [T:W-1(V613_D-1) ] NODE_DESCR: T:W-1(V613_D-1) Preds: [A:W-1(V612_D-1) ] Succ: [G:W-1(V614_D-1) ] NODE_DESCR: G:W-1(V614_D-1) Preds: [T:W-1(V613_D-1) ] Succ: [A:W-1(V615_D-1) ] NODE_DESCR: A:W-1(V615_D-1) Preds: [G:W-1(V614_D-1) ] Succ: [T:W-1(V616_D-1) ] NODE_DESCR: T:W-1(V616_D-1) Preds: [A:W-1(V615_D-1) ] Succ: [G:W-1(V617_D-1) ] NODE_DESCR: G:W-1(V617_D-1) Preds: [T:W-1(V616_D-1) ] Succ: [C:W-1(V618_D-1) ] NODE_DESCR: C:W-1(V618_D-1) Preds: [G:W-1(V617_D-1) ] Succ: [T:W-1(V619_D-1) ] NODE_DESCR: T:W-1(V619_D-1) Preds: [C:W-1(V618_D-1) ] Succ: [T:W-1(V620_D-1) ] NODE_DESCR: T:W-1(V620_D-1) Preds: [T:W-1(V619_D-1) ] Succ: [G:W-1(V621_D-1) ] NODE_DESCR: G:W-1(V621_D-1) Preds: [T:W-1(V620_D-1) ] Succ: [G:W-1(V622_D-1) ] NODE_DESCR: G:W-1(V622_D-1) Preds: [G:W-1(V621_D-1) ] Succ: [T:W-1(V623_D-1) ] NODE_DESCR: T:W-1(V623_D-1) Preds: [G:W-1(V622_D-1) ] Succ: [T:W-1(V624_D-1) ] NODE_DESCR: T:W-1(V624_D-1) Preds: [T:W-1(V623_D-1) ] Succ: [A:W-1(V625_D-1) ] NODE_DESCR: A:W-1(V625_D-1) Preds: [T:W-1(V624_D-1) ] Succ: [A:W-1(V626_D-1) ] NODE_DESCR: A:W-1(V626_D-1) Preds: [A:W-1(V625_D-1) ] Succ: [G:W-1(V627_D-1) ] NODE_DESCR: G:W-1(V627_D-1) Preds: [A:W-1(V626_D-1) ] Succ: [A:W-1(V628_D-1) ] NODE_DESCR: A:W-1(V628_D-1) Preds: [G:W-1(V627_D-1) ] Succ: [C:W-1(V629_D-1) ] NODE_DESCR: C:W-1(V629_D-1) Preds: [A:W-1(V628_D-1) ] Succ: [A:W-1(V630_D-1) ] NODE_DESCR: A:W-1(V630_D-1) Preds: [C:W-1(V629_D-1) ] Succ: [A:W-1(V631_D-1) ] NODE_DESCR: A:W-1(V631_D-1) Preds: [A:W-1(V630_D-1) ] Succ: [G:W-1(V632_D-1) ] NODE_DESCR: G:W-1(V632_D-1) Preds: [A:W-1(V631_D-1) ] Succ: [G:W-1(V633_D-1) ] NODE_DESCR: G:W-1(V633_D-1) Preds: [G:W-1(V632_D-1) ] Succ: [G:W-1(V634_D-1) ] NODE_DESCR: G:W-1(V634_D-1) Preds: [G:W-1(V633_D-1) ] Succ: [G:W-1(V635_D-1) ] NODE_DESCR: G:W-1(V635_D-1) Preds: [G:W-1(V634_D-1) ] Succ: [T:W-1(V636_D-1) ] NODE_DESCR: T:W-1(V636_D-1) Preds: [G:W-1(V635_D-1) ] Succ: [T:W-1(V637_D-1) ] NODE_DESCR: T:W-1(V637_D-1) Preds: [T:W-1(V636_D-1) ] Succ: [A:W-1(V638_D-1) ] NODE_DESCR: A:W-1(V638_D-1) Preds: [T:W-1(V637_D-1) ] Succ: [G:W-1(V639_D-1) ] NODE_DESCR: G:W-1(V639_D-1) Preds: [A:W-1(V638_D-1) ] Succ: [T:W-1(V640_D-1) ] NODE_DESCR: T:W-1(V640_D-1) Preds: [G:W-1(V639_D-1) ] Succ: [G:W-1(V641_D-1) ] NODE_DESCR: G:W-1(V641_D-1) Preds: [T:W-1(V640_D-1) ] Succ: [A:W-1(V642_D-1) ] NODE_DESCR: A:W-1(V642_D-1) Preds: [G:W-1(V641_D-1) ] Succ: [C:W-1(V643_D-1) ] NODE_DESCR: C:W-1(V643_D-1) Preds: [A:W-1(V642_D-1) ] Succ: [A:W-1(V644_D-1) ] NODE_DESCR: A:W-1(V644_D-1) Preds: [C:W-1(V643_D-1) ] Succ: [A:W-1(V645_D-1) ] NODE_DESCR: A:W-1(V645_D-1) Preds: [A:W-1(V644_D-1) ] Succ: [A:W-1(V646_D-1) ] NODE_DESCR: A:W-1(V646_D-1) Preds: [A:W-1(V645_D-1) ] Succ: [G:W-1(V647_D-1) ] NODE_DESCR: G:W-1(V647_D-1) Preds: [A:W-1(V646_D-1) ] Succ: [T:W-1(V648_D-1) ] NODE_DESCR: T:W-1(V648_D-1) Preds: [G:W-1(V647_D-1) ] Succ: [A:W-1(V649_D-1) ] NODE_DESCR: A:W-1(V649_D-1) Preds: [T:W-1(V648_D-1) ] Succ: [A:W-1(V650_D-1) ] NODE_DESCR: A:W-1(V650_D-1) Preds: [A:W-1(V649_D-1) ] Succ: [A:W-1(V651_D-1) ] NODE_DESCR: A:W-1(V651_D-1) Preds: [A:W-1(V650_D-1) ] Succ: [G:W-1(V652_D-1) ] NODE_DESCR: G:W-1(V652_D-1) Preds: [A:W-1(V651_D-1) ] Succ: [A:W-1(V653_D-1) ] NODE_DESCR: A:W-1(V653_D-1) Preds: [G:W-1(V652_D-1) ] Succ: [G:W-1(V654_D-1) ] NODE_DESCR: G:W-1(V654_D-1) Preds: [A:W-1(V653_D-1) ] Succ: [G:W-1(V655_D-1) ] NODE_DESCR: G:W-1(V655_D-1) Preds: [G:W-1(V654_D-1) ] Succ: [A:W-1(V656_D-1) ] NODE_DESCR: A:W-1(V656_D-1) Preds: [G:W-1(V655_D-1) ] Succ: [T:W-1(V657_D-1) ] NODE_DESCR: T:W-1(V657_D-1) Preds: [A:W-1(V656_D-1) ] Succ: [G:W-1(V658_D-1) ] NODE_DESCR: G:W-1(V658_D-1) Preds: [T:W-1(V657_D-1) ] Succ: [A:W-1(V659_D-1) ] NODE_DESCR: A:W-1(V659_D-1) Preds: [G:W-1(V658_D-1) ] Succ: [C:W-1(V660_D-1) ] NODE_DESCR: C:W-1(V660_D-1) Preds: [A:W-1(V659_D-1) ] Succ: [A:W-1(V661_D-1) ] NODE_DESCR: A:W-1(V661_D-1) Preds: [C:W-1(V660_D-1) ] Succ: [G:W-1(V662_D-1) ] NODE_DESCR: G:W-1(V662_D-1) Preds: [A:W-1(V661_D-1) ] Succ: [A:W-1(V663_D-1) ] NODE_DESCR: A:W-1(V663_D-1) Preds: [G:W-1(V662_D-1) ] Succ: [C:W-1(V664_D-1) ] NODE_DESCR: C:W-1(V664_D-1) Preds: [A:W-1(V663_D-1) ] Succ: [T:W-1(V665_D-1) ] NODE_DESCR: T:W-1(V665_D-1) Preds: [C:W-1(V664_D-1) ] Succ: [C:W-1(V666_D-1) ] NODE_DESCR: C:W-1(V666_D-1) Preds: [T:W-1(V665_D-1) ] Succ: [T:W-1(V667_D-1) ] NODE_DESCR: T:W-1(V667_D-1) Preds: [C:W-1(V666_D-1) ] Succ: [C:W-1(V668_D-1) ] NODE_DESCR: C:W-1(V668_D-1) Preds: [T:W-1(V667_D-1) ] Succ: [T:W-1(V669_D-1) ] NODE_DESCR: T:W-1(V669_D-1) Preds: [C:W-1(V668_D-1) ] Succ: [A:W-1(V670_D-1) ] NODE_DESCR: A:W-1(V670_D-1) Preds: [T:W-1(V669_D-1) ] Succ: [A:W-1(V671_D-1) ] NODE_DESCR: A:W-1(V671_D-1) Preds: [A:W-1(V670_D-1) ] Succ: [G:W-1(V672_D-1) ] NODE_DESCR: G:W-1(V672_D-1) Preds: [A:W-1(V671_D-1) ] Succ: [G:W-1(V673_D-1) ] NODE_DESCR: G:W-1(V673_D-1) Preds: [G:W-1(V672_D-1) ] Succ: [G:W-1(V674_D-1) ] NODE_DESCR: G:W-1(V674_D-1) Preds: [G:W-1(V673_D-1) ] Succ: [A:W-1(V675_D-1) ] NODE_DESCR: A:W-1(V675_D-1) Preds: [G:W-1(V674_D-1) ] Succ: [C:W-1(V676_D-1) ] NODE_DESCR: C:W-1(V676_D-1) Preds: [A:W-1(V675_D-1) ] Succ: [A:W-1(V677_D-1) ] NODE_DESCR: A:W-1(V677_D-1) Preds: [C:W-1(V676_D-1) ] Succ: [T:W-1(V678_D-1) ] NODE_DESCR: T:W-1(V678_D-1) Preds: [A:W-1(V677_D-1) ] Succ: [A:W-1(V679_D-1) ] NODE_DESCR: A:W-1(V679_D-1) Preds: [T:W-1(V678_D-1) ] Succ: [T:W-1(V680_D-1) ] NODE_DESCR: T:W-1(V680_D-1) Preds: [A:W-1(V679_D-1) ] Succ: [G:W-1(V681_D-1) ] NODE_DESCR: G:W-1(V681_D-1) Preds: [T:W-1(V680_D-1) ] Succ: [G:W-1(V682_D-1) ] NODE_DESCR: G:W-1(V682_D-1) Preds: [G:W-1(V681_D-1) ] Succ: [G:W-1(V683_D-1) ] NODE_DESCR: G:W-1(V683_D-1) Preds: [G:W-1(V682_D-1) ] Succ: [A:W-1(V684_D-1) ] NODE_DESCR: A:W-1(V684_D-1) Preds: [G:W-1(V683_D-1) ] Succ: [G:W-1(V685_D-1) ] NODE_DESCR: G:W-1(V685_D-1) Preds: [A:W-1(V684_D-1) ] Succ: [C:W-1(V686_D-1) ] NODE_DESCR: C:W-1(V686_D-1) Preds: [G:W-1(V685_D-1) ] Succ: [T:W-1(V687_D-1) ] NODE_DESCR: T:W-1(V687_D-1) Preds: [C:W-1(V686_D-1) ] Succ: [A:W-1(V688_D-1) ] NODE_DESCR: A:W-1(V688_D-1) Preds: [T:W-1(V687_D-1) ] Succ: [C:W-1(V689_D-1) ] NODE_DESCR: C:W-1(V689_D-1) Preds: [A:W-1(V688_D-1) ] Succ: [A:W-1(V690_D-1) ] NODE_DESCR: A:W-1(V690_D-1) Preds: [C:W-1(V689_D-1) ] Succ: [T:W-1(V691_D-1) ] NODE_DESCR: T:W-1(V691_D-1) Preds: [A:W-1(V690_D-1) ] Succ: [A:W-1(V692_D-1) ] NODE_DESCR: A:W-1(V692_D-1) Preds: [T:W-1(V691_D-1) ] Succ: [G:W-1(V693_D-1) ] NODE_DESCR: G:W-1(V693_D-1) Preds: [A:W-1(V692_D-1) ] Succ: [C:W-1(V694_D-1) ] NODE_DESCR: C:W-1(V694_D-1) Preds: [G:W-1(V693_D-1) ] Succ: [C:W-1(V695_D-1) ] NODE_DESCR: C:W-1(V695_D-1) Preds: [C:W-1(V694_D-1) ] Succ: [A:W-1(V696_D-1) ] NODE_DESCR: A:W-1(V696_D-1) Preds: [C:W-1(V695_D-1) ] Succ: [G:W-1(V697_D-1) ] NODE_DESCR: G:W-1(V697_D-1) Preds: [A:W-1(V696_D-1) ] Succ: [C:W-1(V698_D-1) ] NODE_DESCR: C:W-1(V698_D-1) Preds: [G:W-1(V697_D-1) ] Succ: [C:W-1(V699_D-1) ] NODE_DESCR: C:W-1(V699_D-1) Preds: [C:W-1(V698_D-1) ] Succ: [C:W-1(V700_D-1) ] NODE_DESCR: C:W-1(V700_D-1) Preds: [C:W-1(V699_D-1) ] Succ: [C:W-1(V701_D-1) ] NODE_DESCR: C:W-1(V701_D-1) Preds: [C:W-1(V700_D-1) ] Succ: [G:W-1(V702_D-1) ] NODE_DESCR: G:W-1(V702_D-1) Preds: [C:W-1(V701_D-1) ] Succ: [T:W-1(V703_D-1) ] NODE_DESCR: T:W-1(V703_D-1) Preds: [G:W-1(V702_D-1) ] Succ: [G:W-1(V704_D-1) ] NODE_DESCR: G:W-1(V704_D-1) Preds: [T:W-1(V703_D-1) ] Succ: [G:W-1(V705_D-1) ] NODE_DESCR: G:W-1(V705_D-1) Preds: [G:W-1(V704_D-1) ] Succ: [A:W-1(V706_D-1) ] NODE_DESCR: A:W-1(V706_D-1) Preds: [G:W-1(V705_D-1) ] Succ: [G:W-1(V707_D-1) ] NODE_DESCR: G:W-1(V707_D-1) Preds: [A:W-1(V706_D-1) ] Succ: [G:W-1(V708_D-1) ] NODE_DESCR: G:W-1(V708_D-1) Preds: [G:W-1(V707_D-1) ] Succ: [G:W-1(V709_D-1) ] NODE_DESCR: G:W-1(V709_D-1) Preds: [G:W-1(V708_D-1) ] Succ: [A:W-1(V710_D-1) ] NODE_DESCR: A:W-1(V710_D-1) Preds: [G:W-1(V709_D-1) ] Succ: [G:W-1(V711_D-1) ] NODE_DESCR: G:W-1(V711_D-1) Preds: [A:W-1(V710_D-1) ] Succ: [C:W-1(V712_D-1) ] NODE_DESCR: C:W-1(V712_D-1) Preds: [G:W-1(V711_D-1) ] Succ: [C:W-1(V713_D-1) ] NODE_DESCR: C:W-1(V713_D-1) Preds: [C:W-1(V712_D-1) ] Succ: [A:W-1(V714_D-1) ] NODE_DESCR: A:W-1(V714_D-1) Preds: [C:W-1(V713_D-1) ] Succ: [C:W-1(V715_D-1) ] NODE_DESCR: C:W-1(V715_D-1) Preds: [A:W-1(V714_D-1) ] Succ: [C:W-1(V716_D-1) ] NODE_DESCR: C:W-1(V716_D-1) Preds: [C:W-1(V715_D-1) ] Succ: [A:W-1(V717_D-1) ] NODE_DESCR: A:W-1(V717_D-1) Preds: [C:W-1(V716_D-1) C:W-1(V812_D-1) ] Succ: [G:W-1(V718_D-1) ] NODE_DESCR: G:W-1(V718_D-1) Preds: [A:W-1(V717_D-1) ] Succ: [C:W-1(V719_D-1) ] NODE_DESCR: C:W-1(V719_D-1) Preds: [G:W-1(V718_D-1) ] Succ: [C:W-1(V720_D-1) ] NODE_DESCR: C:W-1(V720_D-1) Preds: [C:W-1(V719_D-1) ] Succ: [A:W-1(V721_D-1) ] NODE_DESCR: A:W-1(V721_D-1) Preds: [C:W-1(V720_D-1) ] Succ: [C:W-1(V722_D-1) ] NODE_DESCR: C:W-1(V722_D-1) Preds: [A:W-1(V721_D-1) ] Succ: [A:W-1(V723_D-1) ] NODE_DESCR: A:W-1(V723_D-1) Preds: [C:W-1(V722_D-1) ] Succ: [G:W-1(V724_D-1) ] NODE_DESCR: G:W-1(V724_D-1) Preds: [A:W-1(V723_D-1) ] Succ: [G:W-1(V725_D-1) ] NODE_DESCR: G:W-1(V725_D-1) Preds: [G:W-1(V724_D-1) ] Succ: [T:W-1(V726_D-1) ] NODE_DESCR: T:W-1(V726_D-1) Preds: [G:W-1(V725_D-1) ] Succ: [A:W-1(V727_D-1) ] NODE_DESCR: A:W-1(V727_D-1) Preds: [T:W-1(V726_D-1) ] Succ: [C:W-1(V728_D-1) ] NODE_DESCR: C:W-1(V728_D-1) Preds: [A:W-1(V727_D-1) ] Succ: [C:W-1(V729_D-1) ] NODE_DESCR: C:W-1(V729_D-1) Preds: [C:W-1(V728_D-1) ] Succ: [T:W-1(V730_D-1) ] NODE_DESCR: T:W-1(V730_D-1) Preds: [C:W-1(V729_D-1) ] Succ: [G:W-1(V731_D-1) ] NODE_DESCR: G:W-1(V731_D-1) Preds: [T:W-1(V730_D-1) ] Succ: [A:W-1(V732_D-1) ] NODE_DESCR: A:W-1(V732_D-1) Preds: [G:W-1(V731_D-1) ] Succ: [T:W-1(V733_D-1) ] NODE_DESCR: T:W-1(V733_D-1) Preds: [A:W-1(V732_D-1) ] Succ: [G:W-1(V734_D-1) ] NODE_DESCR: G:W-1(V734_D-1) Preds: [T:W-1(V733_D-1) ] Succ: [G:W-1(V735_D-1) ] NODE_DESCR: G:W-1(V735_D-1) Preds: [G:W-1(V734_D-1) ] Succ: [A:W-1(V736_D-1) ] NODE_DESCR: A:W-1(V736_D-1) Preds: [G:W-1(V735_D-1) ] Succ: [A:W-1(V737_D-1) ] NODE_DESCR: A:W-1(V737_D-1) Preds: [A:W-1(V736_D-1) ] Succ: [A:W-1(V738_D-1) ] NODE_DESCR: A:W-1(V738_D-1) Preds: [A:W-1(V737_D-1) ] Succ: [T:W-1(V739_D-1) ] NODE_DESCR: T:W-1(V739_D-1) Preds: [A:W-1(V738_D-1) ] Succ: [G:W-1(V740_D-1) ] NODE_DESCR: G:W-1(V740_D-1) Preds: [T:W-1(V739_D-1) ] Succ: [C:W-1(V741_D-1) ] NODE_DESCR: C:W-1(V741_D-1) Preds: [G:W-1(V740_D-1) ] Succ: [C:W-1(V742_D-1) ] NODE_DESCR: C:W-1(V742_D-1) Preds: [C:W-1(V741_D-1) ] Succ: [G:W-1(V743_D-1) ] NODE_DESCR: G:W-1(V743_D-1) Preds: [C:W-1(V742_D-1) ] Succ: [G:W-1(V744_D-1) ] NODE_DESCR: G:W-1(V744_D-1) Preds: [G:W-1(V743_D-1) ] Succ: [C:W-1(V745_D-1) ] NODE_DESCR: C:W-1(V745_D-1) Preds: [G:W-1(V744_D-1) ] Succ: [T:W-1(V746_D-1) ] NODE_DESCR: T:W-1(V746_D-1) Preds: [C:W-1(V745_D-1) ] Succ: [C:W-1(V747_D-1) ] NODE_DESCR: C:W-1(V747_D-1) Preds: [T:W-1(V746_D-1) ] Succ: [A:W-1(V748_D-1) ] NODE_DESCR: A:W-1(V748_D-1) Preds: [C:W-1(V747_D-1) ] Succ: [C:W-1(V749_D-1) ] NODE_DESCR: C:W-1(V749_D-1) Preds: [A:W-1(V748_D-1) ] Succ: [T:W-1(V750_D-1) ] NODE_DESCR: T:W-1(V750_D-1) Preds: [C:W-1(V749_D-1) ] Succ: [T:W-1(V751_D-1) ] NODE_DESCR: T:W-1(V751_D-1) Preds: [T:W-1(V750_D-1) ] Succ: [C:W-1(V752_D-1) ] NODE_DESCR: C:W-1(V752_D-1) Preds: [T:W-1(V751_D-1) ] Succ: [C:W-1(V753_D-1) ] NODE_DESCR: C:W-1(V753_D-1) Preds: [C:W-1(V752_D-1) ] Succ: [T:W-1(V754_D-1) ] NODE_DESCR: T:W-1(V754_D-1) Preds: [C:W-1(V753_D-1) ] Succ: [G:W-1(V755_D-1) ] NODE_DESCR: G:W-1(V755_D-1) Preds: [T:W-1(V754_D-1) ] Succ: [T:W-1(V756_D-1) ] NODE_DESCR: T:W-1(V756_D-1) Preds: [G:W-1(V755_D-1) ] Succ: [G:W-1(V757_D-1) ] NODE_DESCR: G:W-1(V757_D-1) Preds: [T:W-1(V756_D-1) ] Succ: [A:W-1(V758_D-1) ] NODE_DESCR: A:W-1(V758_D-1) Preds: [G:W-1(V757_D-1) ] Succ: [] NODE_DESCR: GCTAGGGGAAATAGGGGAGCTCCA:W0(V786_D-1) Preds: [] Succ: [A:W-1(V787_D-1) ] NODE_DESCR: A:W-1(V787_D-1) Preds: [GCTAGGGGAAATAGGGGAGCTCCA:W0(V786_D-1) ] Succ: [A:W-1(V788_D-1) ] NODE_DESCR: A:W-1(V788_D-1) Preds: [A:W-1(V787_D-1) ] Succ: [C:W-1(V789_D-1) ] NODE_DESCR: C:W-1(V789_D-1) Preds: [A:W-1(V788_D-1) ] Succ: [C:W-1(V790_D-1) ] NODE_DESCR: C:W-1(V790_D-1) Preds: [C:W-1(V789_D-1) ] Succ: [C:W-1(V791_D-1) ] NODE_DESCR: C:W-1(V791_D-1) Preds: [C:W-1(V790_D-1) ] Succ: [A:W-1(V792_D-1) ] NODE_DESCR: A:W-1(V792_D-1) Preds: [C:W-1(V791_D-1) ] Succ: [G:W-1(V793_D-1) ] NODE_DESCR: G:W-1(V793_D-1) Preds: [A:W-1(V792_D-1) ] Succ: [C:W-1(V794_D-1) ] NODE_DESCR: C:W-1(V794_D-1) Preds: [G:W-1(V793_D-1) ] Succ: [C:W-1(V795_D-1) ] NODE_DESCR: C:W-1(V795_D-1) Preds: [C:W-1(V794_D-1) ] Succ: [C:W-1(V796_D-1) ] NODE_DESCR: C:W-1(V796_D-1) Preds: [C:W-1(V795_D-1) ] Succ: [C:W-1(V797_D-1) ] NODE_DESCR: C:W-1(V797_D-1) Preds: [C:W-1(V796_D-1) ] Succ: [G:W-1(V798_D-1) ] NODE_DESCR: G:W-1(V798_D-1) Preds: [C:W-1(V797_D-1) ] Succ: [T:W-1(V799_D-1) ] NODE_DESCR: T:W-1(V799_D-1) Preds: [G:W-1(V798_D-1) ] Succ: [G:W-1(V800_D-1) ] NODE_DESCR: G:W-1(V800_D-1) Preds: [T:W-1(V799_D-1) ] Succ: [G:W-1(V801_D-1) ] NODE_DESCR: G:W-1(V801_D-1) Preds: [G:W-1(V800_D-1) ] Succ: [A:W-1(V802_D-1) ] NODE_DESCR: A:W-1(V802_D-1) Preds: [G:W-1(V801_D-1) ] Succ: [G:W-1(V803_D-1) ] NODE_DESCR: G:W-1(V803_D-1) Preds: [A:W-1(V802_D-1) ] Succ: [G:W-1(V804_D-1) ] NODE_DESCR: G:W-1(V804_D-1) Preds: [G:W-1(V803_D-1) ] Succ: [G:W-1(V805_D-1) ] NODE_DESCR: G:W-1(V805_D-1) Preds: [G:W-1(V804_D-1) ] Succ: [A:W-1(V806_D-1) ] NODE_DESCR: A:W-1(V806_D-1) Preds: [G:W-1(V805_D-1) ] Succ: [G:W-1(V807_D-1) ] NODE_DESCR: G:W-1(V807_D-1) Preds: [A:W-1(V806_D-1) ] Succ: [C:W-1(V808_D-1) ] NODE_DESCR: C:W-1(V808_D-1) Preds: [G:W-1(V807_D-1) ] Succ: [C:W-1(V809_D-1) ] NODE_DESCR: C:W-1(V809_D-1) Preds: [C:W-1(V808_D-1) ] Succ: [A:W-1(V810_D-1) ] NODE_DESCR: A:W-1(V810_D-1) Preds: [C:W-1(V809_D-1) ] Succ: [C:W-1(V811_D-1) ] NODE_DESCR: C:W-1(V811_D-1) Preds: [A:W-1(V810_D-1) ] Succ: [C:W-1(V812_D-1) ] NODE_DESCR: C:W-1(V812_D-1) Preds: [C:W-1(V811_D-1) ] Succ: [A:W-1(V717_D-1) ] NODE_DESCR: C:W-1(V813_D-1) Preds: [T:W-1(V524_D-1) ] Succ: [A:W-1(V814_D-1) ] NODE_DESCR: A:W-1(V814_D-1) Preds: [C:W-1(V813_D-1) ] Succ: [G:W-1(V815_D-1) ] NODE_DESCR: G:W-1(V815_D-1) Preds: [A:W-1(V814_D-1) ] Succ: [C:W-1(V816_D-1) ] NODE_DESCR: C:W-1(V816_D-1) Preds: [G:W-1(V815_D-1) ] Succ: [A:W-1(V817_D-1) ] NODE_DESCR: A:W-1(V817_D-1) Preds: [C:W-1(V816_D-1) ] Succ: [C:W-1(V818_D-1) ] NODE_DESCR: C:W-1(V818_D-1) Preds: [A:W-1(V817_D-1) ] Succ: [T:W-1(V819_D-1) ] NODE_DESCR: T:W-1(V819_D-1) Preds: [C:W-1(V818_D-1) ] Succ: [C:W-1(V820_D-1) ] NODE_DESCR: C:W-1(V820_D-1) Preds: [T:W-1(V819_D-1) ] Succ: [T:W-1(V821_D-1) ] NODE_DESCR: T:W-1(V821_D-1) Preds: [C:W-1(V820_D-1) ] Succ: [G:W-1(V822_D-1) ] NODE_DESCR: G:W-1(V822_D-1) Preds: [T:W-1(V821_D-1) ] Succ: [A:W-1(V823_D-1) ] NODE_DESCR: A:W-1(V823_D-1) Preds: [G:W-1(V822_D-1) ] Succ: [A:W-1(V824_D-1) ] NODE_DESCR: A:W-1(V824_D-1) Preds: [A:W-1(V823_D-1) ] Succ: [C:W-1(V825_D-1) ] NODE_DESCR: C:W-1(V825_D-1) Preds: [A:W-1(V824_D-1) ] Succ: [C:W-1(V826_D-1) ] NODE_DESCR: C:W-1(V826_D-1) Preds: [C:W-1(V825_D-1) ] Succ: [C:W-1(V827_D-1) ] NODE_DESCR: C:W-1(V827_D-1) Preds: [C:W-1(V826_D-1) ] Succ: [T:W-1(V828_D-1) ] NODE_DESCR: T:W-1(V828_D-1) Preds: [C:W-1(V827_D-1) ] Succ: [G:W-1(V829_D-1) ] NODE_DESCR: G:W-1(V829_D-1) Preds: [T:W-1(V828_D-1) ] Succ: [T:W-1(V830_D-1) ] NODE_DESCR: T:W-1(V830_D-1) Preds: [G:W-1(V829_D-1) ] Succ: [G:W-1(V831_D-1) ] NODE_DESCR: G:W-1(V831_D-1) Preds: [T:W-1(V830_D-1) ] Succ: [A:W-1(V832_D-1) ] NODE_DESCR: A:W-1(V832_D-1) Preds: [G:W-1(V831_D-1) ] Succ: [G:W-1(V833_D-1) ] NODE_DESCR: G:W-1(V833_D-1) Preds: [A:W-1(V832_D-1) ] Succ: [G:W-1(V834_D-1) ] NODE_DESCR: G:W-1(V834_D-1) Preds: [G:W-1(V833_D-1) ] Succ: [C:W-1(V835_D-1) ] NODE_DESCR: C:W-1(V835_D-1) Preds: [G:W-1(V834_D-1) ] Succ: [A:W-1(V836_D-1) ] NODE_DESCR: A:W-1(V836_D-1) Preds: [C:W-1(V835_D-1) ] Succ: [A:W-1(V549_D-1) ] NODE_DESCR: G:W-1(V885_D-1) Preds: [G:W-1(V415_D-1) ] Succ: [C:W-1(V886_D-1) ] NODE_DESCR: C:W-1(V886_D-1) Preds: [G:W-1(V885_D-1) ] Succ: [T:W-1(V887_D-1) ] NODE_DESCR: T:W-1(V887_D-1) Preds: [C:W-1(V886_D-1) ] Succ: [C:W-1(V888_D-1) ] NODE_DESCR: C:W-1(V888_D-1) Preds: [T:W-1(V887_D-1) ] Succ: [A:W-1(V889_D-1) ] NODE_DESCR: A:W-1(V889_D-1) Preds: [C:W-1(V888_D-1) ] Succ: [T:W-1(V890_D-1) ] NODE_DESCR: T:W-1(V890_D-1) Preds: [A:W-1(V889_D-1) ] Succ: [C:W-1(V891_D-1) ] NODE_DESCR: C:W-1(V891_D-1) Preds: [T:W-1(V890_D-1) ] Succ: [A:W-1(V892_D-1) ] NODE_DESCR: A:W-1(V892_D-1) Preds: [C:W-1(V891_D-1) ] Succ: [G:W-1(V893_D-1) ] NODE_DESCR: G:W-1(V893_D-1) Preds: [A:W-1(V892_D-1) ] Succ: [C:W-1(V894_D-1) ] NODE_DESCR: C:W-1(V894_D-1) Preds: [G:W-1(V893_D-1) ] Succ: [A:W-1(V895_D-1) ] NODE_DESCR: A:W-1(V895_D-1) Preds: [C:W-1(V894_D-1) ] Succ: [A:W-1(V896_D-1) ] NODE_DESCR: A:W-1(V896_D-1) Preds: [A:W-1(V895_D-1) ] Succ: [G:W-1(V897_D-1) ] NODE_DESCR: G:W-1(V897_D-1) Preds: [A:W-1(V896_D-1) ] Succ: [A:W-1(V898_D-1) ] NODE_DESCR: A:W-1(V898_D-1) Preds: [G:W-1(V897_D-1) ] Succ: [A:W-1(V899_D-1) ] NODE_DESCR: A:W-1(V899_D-1) Preds: [A:W-1(V898_D-1) ] Succ: [G:W-1(V900_D-1) ] NODE_DESCR: G:W-1(V900_D-1) Preds: [A:W-1(V899_D-1) ] Succ: [A:W-1(V901_D-1) ] NODE_DESCR: A:W-1(V901_D-1) Preds: [G:W-1(V900_D-1) ] Succ: [A:W-1(V902_D-1) ] NODE_DESCR: A:W-1(V902_D-1) Preds: [A:W-1(V901_D-1) ] Succ: [A:W-1(V903_D-1) ] NODE_DESCR: A:W-1(V903_D-1) Preds: [A:W-1(V902_D-1) ] Succ: [T:W-1(V904_D-1) ] NODE_DESCR: T:W-1(V904_D-1) Preds: [A:W-1(V903_D-1) ] Succ: [C:W-1(V905_D-1) ] NODE_DESCR: C:W-1(V905_D-1) Preds: [T:W-1(V904_D-1) ] Succ: [T:W-1(V906_D-1) ] NODE_DESCR: T:W-1(V906_D-1) Preds: [C:W-1(V905_D-1) ] Succ: [T:W-1(V907_D-1) ] NODE_DESCR: T:W-1(V907_D-1) Preds: [T:W-1(V906_D-1) ] Succ: [T:W-1(V908_D-1) ] NODE_DESCR: T:W-1(V908_D-1) Preds: [T:W-1(V907_D-1) ] Succ: [C:W-1(V440_D-1) ] NODE_DESCR: AGAATACAAAATGCCTTCCTCCAG:W0(V945_D-1) Preds: [] Succ: [C:W-1(V946_D-1) ] NODE_DESCR: C:W-1(V946_D-1) Preds: [AGAATACAAAATGCCTTCCTCCAG:W0(V945_D-1) ] Succ: [C:W-1(V947_D-1) ] NODE_DESCR: C:W-1(V947_D-1) Preds: [C:W-1(V946_D-1) ] Succ: [T:W-1(V948_D-1) ] NODE_DESCR: T:W-1(V948_D-1) Preds: [C:W-1(V947_D-1) ] Succ: [C:W-1(V949_D-1) ] NODE_DESCR: C:W-1(V949_D-1) Preds: [T:W-1(V948_D-1) ] Succ: [A:W-1(V950_D-1) ] NODE_DESCR: A:W-1(V950_D-1) Preds: [C:W-1(V949_D-1) ] Succ: [T:W-1(V951_D-1) ] NODE_DESCR: T:W-1(V951_D-1) Preds: [A:W-1(V950_D-1) ] Succ: [C:W-1(V952_D-1) ] NODE_DESCR: C:W-1(V952_D-1) Preds: [T:W-1(V951_D-1) ] Succ: [A:W-1(V953_D-1) ] NODE_DESCR: A:W-1(V953_D-1) Preds: [C:W-1(V952_D-1) ] Succ: [G:W-1(V954_D-1) ] NODE_DESCR: G:W-1(V954_D-1) Preds: [A:W-1(V953_D-1) ] Succ: [C:W-1(V955_D-1) ] NODE_DESCR: C:W-1(V955_D-1) Preds: [G:W-1(V954_D-1) ] Succ: [A:W-1(V956_D-1) ] NODE_DESCR: A:W-1(V956_D-1) Preds: [C:W-1(V955_D-1) ] Succ: [G:W-1(V957_D-1) ] NODE_DESCR: G:W-1(V957_D-1) Preds: [A:W-1(V956_D-1) ] Succ: [G:W-1(V958_D-1) ] NODE_DESCR: G:W-1(V958_D-1) Preds: [G:W-1(V957_D-1) ] Succ: [A:W-1(V959_D-1) ] NODE_DESCR: A:W-1(V959_D-1) Preds: [G:W-1(V958_D-1) ] Succ: [A:W-1(V960_D-1) ] NODE_DESCR: A:W-1(V960_D-1) Preds: [A:W-1(V959_D-1) ] Succ: [G:W-1(V961_D-1) ] NODE_DESCR: G:W-1(V961_D-1) Preds: [A:W-1(V960_D-1) ] Succ: [A:W-1(V962_D-1) ] NODE_DESCR: A:W-1(V962_D-1) Preds: [G:W-1(V961_D-1) ] Succ: [A:W-1(V963_D-1) ] NODE_DESCR: A:W-1(V963_D-1) Preds: [A:W-1(V962_D-1) ] Succ: [A:W-1(V964_D-1) ] NODE_DESCR: A:W-1(V964_D-1) Preds: [A:W-1(V963_D-1) ] Succ: [T:W-1(V965_D-1) ] NODE_DESCR: T:W-1(V965_D-1) Preds: [A:W-1(V964_D-1) ] Succ: [C:W-1(V966_D-1) ] NODE_DESCR: C:W-1(V966_D-1) Preds: [T:W-1(V965_D-1) ] Succ: [T:W-1(V967_D-1) ] NODE_DESCR: T:W-1(V967_D-1) Preds: [C:W-1(V966_D-1) ] Succ: [T:W-1(V968_D-1) ] NODE_DESCR: T:W-1(V968_D-1) Preds: [T:W-1(V967_D-1) ] Succ: [T:W-1(V969_D-1) ] NODE_DESCR: T:W-1(V969_D-1) Preds: [T:W-1(V968_D-1) ] Succ: [C:W-1(V970_D-1) ] NODE_DESCR: C:W-1(V970_D-1) Preds: [T:W-1(V969_D-1) ] Succ: [T:W-1(V971_D-1) ] NODE_DESCR: T:W-1(V971_D-1) Preds: [C:W-1(V970_D-1) ] Succ: [T:W-1(V972_D-1) ] NODE_DESCR: T:W-1(V972_D-1) Preds: [T:W-1(V971_D-1) ] Succ: [T:W-1(V973_D-1) ] NODE_DESCR: T:W-1(V973_D-1) Preds: [T:W-1(V972_D-1) ] Succ: [C:W-1(V974_D-1) ] NODE_DESCR: C:W-1(V974_D-1) Preds: [T:W-1(V973_D-1) ] Succ: [C:W-1(V975_D-1) ] NODE_DESCR: C:W-1(V975_D-1) Preds: [C:W-1(V974_D-1) ] Succ: [A:W-1(V976_D-1) ] NODE_DESCR: A:W-1(V976_D-1) Preds: [C:W-1(V975_D-1) ] Succ: [A:W-1(V977_D-1) ] NODE_DESCR: A:W-1(V977_D-1) Preds: [A:W-1(V976_D-1) ] Succ: [G:W-1(V978_D-1) ] NODE_DESCR: G:W-1(V978_D-1) Preds: [A:W-1(V977_D-1) ] Succ: [T:W-1(V979_D-1) ] NODE_DESCR: T:W-1(V979_D-1) Preds: [G:W-1(V978_D-1) ] Succ: [A:W-1(V980_D-1) ] NODE_DESCR: A:W-1(V980_D-1) Preds: [T:W-1(V979_D-1) ] Succ: [G:W-1(V451_D-1) ] ORIGINAL GRAPH NODE: GGCCACACGATGGCTTATCACGTC with ID: 380 ORIGINAL GRAPH NODE: GCCACACGATGGCTTATCACGTCC with ID: 381 ORIGINAL GRAPH NODE: CCACACGATGGCTTATCACGTCCA with ID: 382 ORIGINAL GRAPH NODE: CACACGATGGCTTATCACGTCCAC with ID: 383 ORIGINAL GRAPH NODE: ACACGATGGCTTATCACGTCCACA with ID: 384 ORIGINAL GRAPH NODE: CACGATGGCTTATCACGTCCACAT with ID: 385 ORIGINAL GRAPH NODE: ACGATGGCTTATCACGTCCACATT with ID: 386 ORIGINAL GRAPH NODE: CGATGGCTTATCACGTCCACATTT with ID: 387 ORIGINAL GRAPH NODE: GATGGCTTATCACGTCCACATTTC with ID: 388 ORIGINAL GRAPH NODE: ATGGCTTATCACGTCCACATTTCT with ID: 389 ORIGINAL GRAPH NODE: TGGCTTATCACGTCCACATTTCTA with ID: 390 ORIGINAL GRAPH NODE: GGCTTATCACGTCCACATTTCTAC with ID: 391 ORIGINAL GRAPH NODE: GCTTATCACGTCCACATTTCTACT with ID: 392 ORIGINAL GRAPH NODE: CTTATCACGTCCACATTTCTACTG with ID: 393 ORIGINAL GRAPH NODE: TTATCACGTCCACATTTCTACTGG with ID: 394 ORIGINAL GRAPH NODE: TATCACGTCCACATTTCTACTGGC with ID: 395 ORIGINAL GRAPH NODE: ATCACGTCCACATTTCTACTGGCT with ID: 396 ORIGINAL GRAPH NODE: TCACGTCCACATTTCTACTGGCTA with ID: 397 ORIGINAL GRAPH NODE: CACGTCCACATTTCTACTGGCTAC with ID: 398 ORIGINAL GRAPH NODE: ACGTCCACATTTCTACTGGCTACA with ID: 399 ORIGINAL GRAPH NODE: CGTCCACATTTCTACTGGCTACAA with ID: 400 ORIGINAL GRAPH NODE: GTCCACATTTCTACTGGCTACAAA with ID: 401 ORIGINAL GRAPH NODE: TCCACATTTCTACTGGCTACAAAC with ID: 402 ORIGINAL GRAPH NODE: CCACATTTCTACTGGCTACAAACA with ID: 403 ORIGINAL GRAPH NODE: CACATTTCTACTGGCTACAAACAG with ID: 404 ORIGINAL GRAPH NODE: ACATTTCTACTGGCTACAAACAGA with ID: 405 ORIGINAL GRAPH NODE: CATTTCTACTGGCTACAAACAGAC with ID: 406 ORIGINAL GRAPH NODE: ATTTCTACTGGCTACAAACAGACT with ID: 407 ORIGINAL GRAPH NODE: TTTCTACTGGCTACAAACAGACTT with ID: 408 ORIGINAL GRAPH NODE: TTCTACTGGCTACAAACAGACTTC with ID: 409 ORIGINAL GRAPH NODE: TCTACTGGCTACAAACAGACTTCC with ID: 410 ORIGINAL GRAPH NODE: CTACTGGCTACAAACAGACTTCCT with ID: 411 ORIGINAL GRAPH NODE: TACTGGCTACAAACAGACTTCCTC with ID: 412 ORIGINAL GRAPH NODE: ACTGGCTACAAACAGACTTCCTCA with ID: 413 ORIGINAL GRAPH NODE: CTGGCTACAAACAGACTTCCTCAA with ID: 414 ORIGINAL GRAPH NODE: TGGCTACAAACAGACTTCCTCAAG with ID: 415 ORIGINAL GRAPH NODE: GGCTACAAACAGACTTCCTCAAGC with ID: 416 ORIGINAL GRAPH NODE: GCTACAAACAGACTTCCTCAAGCC with ID: 417 ORIGINAL GRAPH NODE: CTACAAACAGACTTCCTCAAGCCT with ID: 418 ORIGINAL GRAPH NODE: TACAAACAGACTTCCTCAAGCCTC with ID: 419 ORIGINAL GRAPH NODE: ACAAACAGACTTCCTCAAGCCTCA with ID: 420 ORIGINAL GRAPH NODE: CAAACAGACTTCCTCAAGCCTCAT with ID: 421 ORIGINAL GRAPH NODE: AAACAGACTTCCTCAAGCCTCATC with ID: 422 ORIGINAL GRAPH NODE: AACAGACTTCCTCAAGCCTCATCA with ID: 423 ORIGINAL GRAPH NODE: ACAGACTTCCTCAAGCCTCATCAG with ID: 424 ORIGINAL GRAPH NODE: CAGACTTCCTCAAGCCTCATCAGC with ID: 425 ORIGINAL GRAPH NODE: AGACTTCCTCAAGCCTCATCAGCA with ID: 426 ORIGINAL GRAPH NODE: GACTTCCTCAAGCCTCATCAGCAA with ID: 427 ORIGINAL GRAPH NODE: ACTTCCTCAAGCCTCATCAGCAAG with ID: 428 ORIGINAL GRAPH NODE: CTTCCTCAAGCCTCATCAGCAAGA with ID: 429 ORIGINAL GRAPH NODE: TTCCTCAAGCCTCATCAGCAAGAA with ID: 430 ORIGINAL GRAPH NODE: TCCTCAAGCCTCATCAGCAAGAAG with ID: 431 ORIGINAL GRAPH NODE: CCTCAAGCCTCATCAGCAAGAAGA with ID: 432 ORIGINAL GRAPH NODE: CTCAAGCCTCATCAGCAAGAAGAA with ID: 433 ORIGINAL GRAPH NODE: TCAAGCCTCATCAGCAAGAAGAAA with ID: 434 ORIGINAL GRAPH NODE: CAAGCCTCATCAGCAAGAAGAAAT with ID: 435 ORIGINAL GRAPH NODE: AAGCCTCATCAGCAAGAAGAAATC with ID: 436 ORIGINAL GRAPH NODE: AGCCTCATCAGCAAGAAGAAATCT with ID: 437 ORIGINAL GRAPH NODE: GCCTCATCAGCAAGAAGAAATCTT with ID: 438 ORIGINAL GRAPH NODE: CCTCATCAGCAAGAAGAAATCTTT with ID: 439 ORIGINAL GRAPH NODE: CTCATCAGCAAGAAGAAATCTTTC with ID: 440 ORIGINAL GRAPH NODE: TCATCAGCAAGAAGAAATCTTTCT with ID: 441 ORIGINAL GRAPH NODE: CATCAGCAAGAAGAAATCTTTCTT with ID: 442 ORIGINAL GRAPH NODE: ATCAGCAAGAAGAAATCTTTCTTT with ID: 443 ORIGINAL GRAPH NODE: TCAGCAAGAAGAAATCTTTCTTTC with ID: 444 ORIGINAL GRAPH NODE: CAGCAAGAAGAAATCTTTCTTTCC with ID: 445 ORIGINAL GRAPH NODE: AGCAAGAAGAAATCTTTCTTTCCA with ID: 446 ORIGINAL GRAPH NODE: GCAAGAAGAAATCTTTCTTTCCAA with ID: 447 ORIGINAL GRAPH NODE: CAAGAAGAAATCTTTCTTTCCAAG with ID: 448 ORIGINAL GRAPH NODE: AAGAAGAAATCTTTCTTTCCAAGT with ID: 449 ORIGINAL GRAPH NODE: AGAAGAAATCTTTCTTTCCAAGTA with ID: 450 ORIGINAL GRAPH NODE: GAAGAAATCTTTCTTTCCAAGTAG with ID: 451 ORIGINAL GRAPH NODE: AAGAAATCTTTCTTTCCAAGTAGT with ID: 452 ORIGINAL GRAPH NODE: AGAAATCTTTCTTTCCAAGTAGTG with ID: 453 ORIGINAL GRAPH NODE: GAAATCTTTCTTTCCAAGTAGTGT with ID: 454 ORIGINAL GRAPH NODE: AAATCTTTCTTTCCAAGTAGTGTC with ID: 455 ORIGINAL GRAPH NODE: AATCTTTCTTTCCAAGTAGTGTCT with ID: 456 ORIGINAL GRAPH NODE: ATCTTTCTTTCCAAGTAGTGTCTT with ID: 457 ORIGINAL GRAPH NODE: TCTTTCTTTCCAAGTAGTGTCTTA with ID: 458 ORIGINAL GRAPH NODE: CTTTCTTTCCAAGTAGTGTCTTAA with ID: 459 ORIGINAL GRAPH NODE: TTTCTTTCCAAGTAGTGTCTTAAC with ID: 460 ORIGINAL GRAPH NODE: TTCTTTCCAAGTAGTGTCTTAACT with ID: 461 ORIGINAL GRAPH NODE: TCTTTCCAAGTAGTGTCTTAACTC with ID: 462 ORIGINAL GRAPH NODE: CTTTCCAAGTAGTGTCTTAACTCA with ID: 463 ORIGINAL GRAPH NODE: TTTCCAAGTAGTGTCTTAACTCAG with ID: 464 ORIGINAL GRAPH NODE: TTCCAAGTAGTGTCTTAACTCAGG with ID: 465 ORIGINAL GRAPH NODE: TCCAAGTAGTGTCTTAACTCAGGA with ID: 466 ORIGINAL GRAPH NODE: CCAAGTAGTGTCTTAACTCAGGAG with ID: 467 ORIGINAL GRAPH NODE: CAAGTAGTGTCTTAACTCAGGAGA with ID: 468 ORIGINAL GRAPH NODE: AAGTAGTGTCTTAACTCAGGAGAT with ID: 469 ORIGINAL GRAPH NODE: AGTAGTGTCTTAACTCAGGAGATC with ID: 470 ORIGINAL GRAPH NODE: GTAGTGTCTTAACTCAGGAGATCA with ID: 471 ORIGINAL GRAPH NODE: TAGTGTCTTAACTCAGGAGATCAT with ID: 472 ORIGINAL GRAPH NODE: AGTGTCTTAACTCAGGAGATCATG with ID: 473 ORIGINAL GRAPH NODE: GTGTCTTAACTCAGGAGATCATGG with ID: 474 ORIGINAL GRAPH NODE: TGTCTTAACTCAGGAGATCATGGT with ID: 475 ORIGINAL GRAPH NODE: GTCTTAACTCAGGAGATCATGGTA with ID: 476 ORIGINAL GRAPH NODE: TCTTAACTCAGGAGATCATGGTAG with ID: 477 ORIGINAL GRAPH NODE: CTTAACTCAGGAGATCATGGTAGG with ID: 478 ORIGINAL GRAPH NODE: TTAACTCAGGAGATCATGGTAGGG with ID: 479 ORIGINAL GRAPH NODE: TAACTCAGGAGATCATGGTAGGGA with ID: 480 ORIGINAL GRAPH NODE: AACTCAGGAGATCATGGTAGGGAA with ID: 481 ORIGINAL GRAPH NODE: ACTCAGGAGATCATGGTAGGGAAG with ID: 482 ORIGINAL GRAPH NODE: CTCAGGAGATCATGGTAGGGAAGG with ID: 483 ORIGINAL GRAPH NODE: TCAGGAGATCATGGTAGGGAAGGG with ID: 484 ORIGINAL GRAPH NODE: CAGGAGATCATGGTAGGGAAGGGG with ID: 485 ORIGINAL GRAPH NODE: AGGAGATCATGGTAGGGAAGGGGT with ID: 486 ORIGINAL GRAPH NODE: GGAGATCATGGTAGGGAAGGGGTC with ID: 487 ORIGINAL GRAPH NODE: GAGATCATGGTAGGGAAGGGGTCA with ID: 488 ORIGINAL GRAPH NODE: AGATCATGGTAGGGAAGGGGTCAG with ID: 489 ORIGINAL GRAPH NODE: GATCATGGTAGGGAAGGGGTCAGG with ID: 490 ORIGINAL GRAPH NODE: ATCATGGTAGGGAAGGGGTCAGGC with ID: 491 ORIGINAL GRAPH NODE: TCATGGTAGGGAAGGGGTCAGGCC with ID: 492 ORIGINAL GRAPH NODE: CATGGTAGGGAAGGGGTCAGGCCA with ID: 493 ORIGINAL GRAPH NODE: ATGGTAGGGAAGGGGTCAGGCCAC with ID: 494 ORIGINAL GRAPH NODE: TGGTAGGGAAGGGGTCAGGCCACT with ID: 495 ORIGINAL GRAPH NODE: GGTAGGGAAGGGGTCAGGCCACTT with ID: 496 ORIGINAL GRAPH NODE: GTAGGGAAGGGGTCAGGCCACTTC with ID: 497 ORIGINAL GRAPH NODE: TAGGGAAGGGGTCAGGCCACTTCA with ID: 498 ORIGINAL GRAPH NODE: AGGGAAGGGGTCAGGCCACTTCAC with ID: 499 ORIGINAL GRAPH NODE: GGGAAGGGGTCAGGCCACTTCACA with ID: 500 ORIGINAL GRAPH NODE: GGAAGGGGTCAGGCCACTTCACAA with ID: 501 ORIGINAL GRAPH NODE: GAAGGGGTCAGGCCACTTCACAAG with ID: 502 ORIGINAL GRAPH NODE: AAGGGGTCAGGCCACTTCACAAGG with ID: 503 ORIGINAL GRAPH NODE: AGGGGTCAGGCCACTTCACAAGGA with ID: 504 ORIGINAL GRAPH NODE: GGGGTCAGGCCACTTCACAAGGAG with ID: 505 ORIGINAL GRAPH NODE: GGGTCAGGCCACTTCACAAGGAGC with ID: 506 ORIGINAL GRAPH NODE: GGTCAGGCCACTTCACAAGGAGCA with ID: 507 ORIGINAL GRAPH NODE: GTCAGGCCACTTCACAAGGAGCAG with ID: 508 ORIGINAL GRAPH NODE: TCAGGCCACTTCACAAGGAGCAGA with ID: 509 ORIGINAL GRAPH NODE: CAGGCCACTTCACAAGGAGCAGAG with ID: 510 ORIGINAL GRAPH NODE: AGGCCACTTCACAAGGAGCAGAGT with ID: 511 ORIGINAL GRAPH NODE: GGCCACTTCACAAGGAGCAGAGTT with ID: 512 ORIGINAL GRAPH NODE: GCCACTTCACAAGGAGCAGAGTTA with ID: 513 ORIGINAL GRAPH NODE: CCACTTCACAAGGAGCAGAGTTAG with ID: 514 ORIGINAL GRAPH NODE: CACTTCACAAGGAGCAGAGTTAGG with ID: 515 ORIGINAL GRAPH NODE: ACTTCACAAGGAGCAGAGTTAGGA with ID: 516 ORIGINAL GRAPH NODE: CTTCACAAGGAGCAGAGTTAGGAA with ID: 517 ORIGINAL GRAPH NODE: TTCACAAGGAGCAGAGTTAGGAAG with ID: 518 ORIGINAL GRAPH NODE: TCACAAGGAGCAGAGTTAGGAAGC with ID: 519 ORIGINAL GRAPH NODE: CACAAGGAGCAGAGTTAGGAAGCT with ID: 520 ORIGINAL GRAPH NODE: ACAAGGAGCAGAGTTAGGAAGCTC with ID: 521 ORIGINAL GRAPH NODE: CAAGGAGCAGAGTTAGGAAGCTCC with ID: 522 ORIGINAL GRAPH NODE: AAGGAGCAGAGTTAGGAAGCTCCC with ID: 523 ORIGINAL GRAPH NODE: AGGAGCAGAGTTAGGAAGCTCCCT with ID: 524 ORIGINAL GRAPH NODE: GGAGCAGAGTTAGGAAGCTCCCTG with ID: 525 ORIGINAL GRAPH NODE: GAGCAGAGTTAGGAAGCTCCCTGA with ID: 526 ORIGINAL GRAPH NODE: AGCAGAGTTAGGAAGCTCCCTGAG with ID: 527 ORIGINAL GRAPH NODE: GCAGAGTTAGGAAGCTCCCTGAGC with ID: 528 ORIGINAL GRAPH NODE: CAGAGTTAGGAAGCTCCCTGAGCA with ID: 529 ORIGINAL GRAPH NODE: AGAGTTAGGAAGCTCCCTGAGCAC with ID: 530 ORIGINAL GRAPH NODE: GAGTTAGGAAGCTCCCTGAGCACT with ID: 531 ORIGINAL GRAPH NODE: AGTTAGGAAGCTCCCTGAGCACTC with ID: 532 ORIGINAL GRAPH NODE: GTTAGGAAGCTCCCTGAGCACTCT with ID: 533 ORIGINAL GRAPH NODE: TTAGGAAGCTCCCTGAGCACTCTG with ID: 534 ORIGINAL GRAPH NODE: TAGGAAGCTCCCTGAGCACTCTGA with ID: 535 ORIGINAL GRAPH NODE: AGGAAGCTCCCTGAGCACTCTGAA with ID: 536 ORIGINAL GRAPH NODE: GGAAGCTCCCTGAGCACTCTGAAC with ID: 537 ORIGINAL GRAPH NODE: GAAGCTCCCTGAGCACTCTGAACC with ID: 538 ORIGINAL GRAPH NODE: AAGCTCCCTGAGCACTCTGAACCC with ID: 539 ORIGINAL GRAPH NODE: AGCTCCCTGAGCACTCTGAACCCT with ID: 540 ORIGINAL GRAPH NODE: GCTCCCTGAGCACTCTGAACCCTG with ID: 541 ORIGINAL GRAPH NODE: CTCCCTGAGCACTCTGAACCCTGT with ID: 542 ORIGINAL GRAPH NODE: TCCCTGAGCACTCTGAACCCTGTG with ID: 543 ORIGINAL GRAPH NODE: CCCTGAGCACTCTGAACCCTGTGA with ID: 544 ORIGINAL GRAPH NODE: CCTGAGCACTCTGAACCCTGTGAG with ID: 545 ORIGINAL GRAPH NODE: CTGAGCACTCTGAACCCTGTGAGG with ID: 546 ORIGINAL GRAPH NODE: TGAGCACTCTGAACCCTGTGAGGC with ID: 547 ORIGINAL GRAPH NODE: GAGCACTCTGAACCCTGTGAGGCA with ID: 548 ORIGINAL GRAPH NODE: AGCACTCTGAACCCTGTGAGGCAA with ID: 549 ORIGINAL GRAPH NODE: GCACTCTGAACCCTGTGAGGCAAG with ID: 550 ORIGINAL GRAPH NODE: CACTCTGAACCCTGTGAGGCAAGT with ID: 551 ORIGINAL GRAPH NODE: ACTCTGAACCCTGTGAGGCAAGTC with ID: 552 ORIGINAL GRAPH NODE: CTCTGAACCCTGTGAGGCAAGTCC with ID: 553 ORIGINAL GRAPH NODE: TCTGAACCCTGTGAGGCAAGTCCA with ID: 554 ORIGINAL GRAPH NODE: CTGAACCCTGTGAGGCAAGTCCAC with ID: 555 ORIGINAL GRAPH NODE: TGAACCCTGTGAGGCAAGTCCACC with ID: 556 ORIGINAL GRAPH NODE: GAACCCTGTGAGGCAAGTCCACCA with ID: 557 ORIGINAL GRAPH NODE: AACCCTGTGAGGCAAGTCCACCAC with ID: 558 ORIGINAL GRAPH NODE: ACCCTGTGAGGCAAGTCCACCACC with ID: 559 ORIGINAL GRAPH NODE: CCCTGTGAGGCAAGTCCACCACCA with ID: 560 ORIGINAL GRAPH NODE: CCTGTGAGGCAAGTCCACCACCAG with ID: 561 ORIGINAL GRAPH NODE: CTGTGAGGCAAGTCCACCACCAGC with ID: 562 ORIGINAL GRAPH NODE: TGTGAGGCAAGTCCACCACCAGCG with ID: 563 ORIGINAL GRAPH NODE: GTGAGGCAAGTCCACCACCAGCGT with ID: 564 ORIGINAL GRAPH NODE: TGAGGCAAGTCCACCACCAGCGTA with ID: 565 ORIGINAL GRAPH NODE: GAGGCAAGTCCACCACCAGCGTAT with ID: 566 ORIGINAL GRAPH NODE: AGGCAAGTCCACCACCAGCGTATC with ID: 567 ORIGINAL GRAPH NODE: GGCAAGTCCACCACCAGCGTATCT with ID: 568 ORIGINAL GRAPH NODE: GCAAGTCCACCACCAGCGTATCTA with ID: 569 ORIGINAL GRAPH NODE: CAAGTCCACCACCAGCGTATCTAG with ID: 570 ORIGINAL GRAPH NODE: AAGTCCACCACCAGCGTATCTAGA with ID: 571 ORIGINAL GRAPH NODE: AGTCCACCACCAGCGTATCTAGAC with ID: 572 ORIGINAL GRAPH NODE: GTCCACCACCAGCGTATCTAGACC with ID: 573 ORIGINAL GRAPH NODE: TCCACCACCAGCGTATCTAGACCC with ID: 574 ORIGINAL GRAPH NODE: CCACCACCAGCGTATCTAGACCCA with ID: 575 ORIGINAL GRAPH NODE: CACCACCAGCGTATCTAGACCCAG with ID: 576 ORIGINAL GRAPH NODE: ACCACCAGCGTATCTAGACCCAGG with ID: 577 ORIGINAL GRAPH NODE: CCACCAGCGTATCTAGACCCAGGC with ID: 578 ORIGINAL GRAPH NODE: CACCAGCGTATCTAGACCCAGGCC with ID: 579 ORIGINAL GRAPH NODE: ACCAGCGTATCTAGACCCAGGCCA with ID: 580 ORIGINAL GRAPH NODE: CCAGCGTATCTAGACCCAGGCCAT with ID: 581 ORIGINAL GRAPH NODE: CAGCGTATCTAGACCCAGGCCATC with ID: 582 ORIGINAL GRAPH NODE: AGCGTATCTAGACCCAGGCCATCT with ID: 583 ORIGINAL GRAPH NODE: GCGTATCTAGACCCAGGCCATCTA with ID: 584 ORIGINAL GRAPH NODE: CGTATCTAGACCCAGGCCATCTAA with ID: 585 ORIGINAL GRAPH NODE: GTATCTAGACCCAGGCCATCTAAT with ID: 586 ORIGINAL GRAPH NODE: TATCTAGACCCAGGCCATCTAATA with ID: 587 ORIGINAL GRAPH NODE: ATCTAGACCCAGGCCATCTAATAA with ID: 588 ORIGINAL GRAPH NODE: TCTAGACCCAGGCCATCTAATAAA with ID: 589 ORIGINAL GRAPH NODE: CTAGACCCAGGCCATCTAATAAAG with ID: 590 ORIGINAL GRAPH NODE: TAGACCCAGGCCATCTAATAAAGG with ID: 591 ORIGINAL GRAPH NODE: AGACCCAGGCCATCTAATAAAGGA with ID: 592 ORIGINAL GRAPH NODE: GACCCAGGCCATCTAATAAAGGAA with ID: 593 ORIGINAL GRAPH NODE: ACCCAGGCCATCTAATAAAGGAAA with ID: 594 ORIGINAL GRAPH NODE: CCCAGGCCATCTAATAAAGGAAAA with ID: 595 ORIGINAL GRAPH NODE: CCAGGCCATCTAATAAAGGAAAAC with ID: 596 ORIGINAL GRAPH NODE: CAGGCCATCTAATAAAGGAAAACT with ID: 597 ORIGINAL GRAPH NODE: AGGCCATCTAATAAAGGAAAACTG with ID: 598 ORIGINAL GRAPH NODE: GGCCATCTAATAAAGGAAAACTGC with ID: 599 ORIGINAL GRAPH NODE: GCCATCTAATAAAGGAAAACTGCA with ID: 600 ORIGINAL GRAPH NODE: CCATCTAATAAAGGAAAACTGCAT with ID: 601 ORIGINAL GRAPH NODE: CATCTAATAAAGGAAAACTGCATC with ID: 602 ORIGINAL GRAPH NODE: ATCTAATAAAGGAAAACTGCATCT with ID: 603 ORIGINAL GRAPH NODE: TCTAATAAAGGAAAACTGCATCTT with ID: 604 ORIGINAL GRAPH NODE: CTAATAAAGGAAAACTGCATCTTT with ID: 605 ORIGINAL GRAPH NODE: TAATAAAGGAAAACTGCATCTTTG with ID: 606 ORIGINAL GRAPH NODE: AATAAAGGAAAACTGCATCTTTGC with ID: 607 ORIGINAL GRAPH NODE: ATAAAGGAAAACTGCATCTTTGCC with ID: 608 ORIGINAL GRAPH NODE: TAAAGGAAAACTGCATCTTTGCCC with ID: 609 ORIGINAL GRAPH NODE: AAAGGAAAACTGCATCTTTGCCCA with ID: 610 ORIGINAL GRAPH NODE: AAGGAAAACTGCATCTTTGCCCAC with ID: 611 ORIGINAL GRAPH NODE: AGGAAAACTGCATCTTTGCCCACA with ID: 612 ORIGINAL GRAPH NODE: GGAAAACTGCATCTTTGCCCACAT with ID: 613 ORIGINAL GRAPH NODE: GAAAACTGCATCTTTGCCCACATG with ID: 614 ORIGINAL GRAPH NODE: AAAACTGCATCTTTGCCCACATGA with ID: 615 ORIGINAL GRAPH NODE: AAACTGCATCTTTGCCCACATGAT with ID: 616 ORIGINAL GRAPH NODE: AACTGCATCTTTGCCCACATGATG with ID: 617 ORIGINAL GRAPH NODE: ACTGCATCTTTGCCCACATGATGC with ID: 618 ORIGINAL GRAPH NODE: CTGCATCTTTGCCCACATGATGCT with ID: 619 ORIGINAL GRAPH NODE: TGCATCTTTGCCCACATGATGCTT with ID: 620 ORIGINAL GRAPH NODE: GCATCTTTGCCCACATGATGCTTG with ID: 621 ORIGINAL GRAPH NODE: CATCTTTGCCCACATGATGCTTGG with ID: 622 ORIGINAL GRAPH NODE: ATCTTTGCCCACATGATGCTTGGT with ID: 623 ORIGINAL GRAPH NODE: TCTTTGCCCACATGATGCTTGGTT with ID: 624 ORIGINAL GRAPH NODE: CTTTGCCCACATGATGCTTGGTTA with ID: 625 ORIGINAL GRAPH NODE: TTTGCCCACATGATGCTTGGTTAA with ID: 626 ORIGINAL GRAPH NODE: TTGCCCACATGATGCTTGGTTAAG with ID: 627 ORIGINAL GRAPH NODE: TGCCCACATGATGCTTGGTTAAGA with ID: 628 ORIGINAL GRAPH NODE: GCCCACATGATGCTTGGTTAAGAC with ID: 629 ORIGINAL GRAPH NODE: CCCACATGATGCTTGGTTAAGACA with ID: 630 ORIGINAL GRAPH NODE: CCACATGATGCTTGGTTAAGACAA with ID: 631 ORIGINAL GRAPH NODE: CACATGATGCTTGGTTAAGACAAG with ID: 632 ORIGINAL GRAPH NODE: ACATGATGCTTGGTTAAGACAAGG with ID: 633 ORIGINAL GRAPH NODE: CATGATGCTTGGTTAAGACAAGGG with ID: 634 ORIGINAL GRAPH NODE: ATGATGCTTGGTTAAGACAAGGGG with ID: 635 ORIGINAL GRAPH NODE: TGATGCTTGGTTAAGACAAGGGGT with ID: 636 ORIGINAL GRAPH NODE: GATGCTTGGTTAAGACAAGGGGTT with ID: 637 ORIGINAL GRAPH NODE: ATGCTTGGTTAAGACAAGGGGTTA with ID: 638 ORIGINAL GRAPH NODE: TGCTTGGTTAAGACAAGGGGTTAG with ID: 639 ORIGINAL GRAPH NODE: GCTTGGTTAAGACAAGGGGTTAGT with ID: 640 ORIGINAL GRAPH NODE: CTTGGTTAAGACAAGGGGTTAGTG with ID: 641 ORIGINAL GRAPH NODE: TTGGTTAAGACAAGGGGTTAGTGA with ID: 642 ORIGINAL GRAPH NODE: TGGTTAAGACAAGGGGTTAGTGAC with ID: 643 ORIGINAL GRAPH NODE: GGTTAAGACAAGGGGTTAGTGACA with ID: 644 ORIGINAL GRAPH NODE: GTTAAGACAAGGGGTTAGTGACAA with ID: 645 ORIGINAL GRAPH NODE: TTAAGACAAGGGGTTAGTGACAAA with ID: 646 ORIGINAL GRAPH NODE: TAAGACAAGGGGTTAGTGACAAAG with ID: 647 ORIGINAL GRAPH NODE: AAGACAAGGGGTTAGTGACAAAGT with ID: 648 ORIGINAL GRAPH NODE: AGACAAGGGGTTAGTGACAAAGTA with ID: 649 ORIGINAL GRAPH NODE: GACAAGGGGTTAGTGACAAAGTAA with ID: 650 ORIGINAL GRAPH NODE: ACAAGGGGTTAGTGACAAAGTAAA with ID: 651 ORIGINAL GRAPH NODE: CAAGGGGTTAGTGACAAAGTAAAG with ID: 652 ORIGINAL GRAPH NODE: AAGGGGTTAGTGACAAAGTAAAGA with ID: 653 ORIGINAL GRAPH NODE: AGGGGTTAGTGACAAAGTAAAGAG with ID: 654 ORIGINAL GRAPH NODE: GGGGTTAGTGACAAAGTAAAGAGG with ID: 655 ORIGINAL GRAPH NODE: GGGTTAGTGACAAAGTAAAGAGGA with ID: 656 ORIGINAL GRAPH NODE: GGTTAGTGACAAAGTAAAGAGGAT with ID: 657 ORIGINAL GRAPH NODE: GTTAGTGACAAAGTAAAGAGGATG with ID: 658 ORIGINAL GRAPH NODE: TTAGTGACAAAGTAAAGAGGATGA with ID: 659 ORIGINAL GRAPH NODE: TAGTGACAAAGTAAAGAGGATGAC with ID: 660 ORIGINAL GRAPH NODE: AGTGACAAAGTAAAGAGGATGACA with ID: 661 ORIGINAL GRAPH NODE: GTGACAAAGTAAAGAGGATGACAG with ID: 662 ORIGINAL GRAPH NODE: TGACAAAGTAAAGAGGATGACAGA with ID: 663 ORIGINAL GRAPH NODE: GACAAAGTAAAGAGGATGACAGAC with ID: 664 ORIGINAL GRAPH NODE: ACAAAGTAAAGAGGATGACAGACT with ID: 665 ORIGINAL GRAPH NODE: CAAAGTAAAGAGGATGACAGACTC with ID: 666 ORIGINAL GRAPH NODE: AAAGTAAAGAGGATGACAGACTCT with ID: 667 ORIGINAL GRAPH NODE: AAGTAAAGAGGATGACAGACTCTC with ID: 668 ORIGINAL GRAPH NODE: AGTAAAGAGGATGACAGACTCTCT with ID: 669 ORIGINAL GRAPH NODE: GTAAAGAGGATGACAGACTCTCTA with ID: 670 ORIGINAL GRAPH NODE: TAAAGAGGATGACAGACTCTCTAA with ID: 671 ORIGINAL GRAPH NODE: AAAGAGGATGACAGACTCTCTAAG with ID: 672 ORIGINAL GRAPH NODE: AAGAGGATGACAGACTCTCTAAGG with ID: 673 ORIGINAL GRAPH NODE: AGAGGATGACAGACTCTCTAAGGG with ID: 674 ORIGINAL GRAPH NODE: GAGGATGACAGACTCTCTAAGGGA with ID: 675 ORIGINAL GRAPH NODE: AGGATGACAGACTCTCTAAGGGAC with ID: 676 ORIGINAL GRAPH NODE: GGATGACAGACTCTCTAAGGGACA with ID: 677 ORIGINAL GRAPH NODE: GATGACAGACTCTCTAAGGGACAT with ID: 678 ORIGINAL GRAPH NODE: ATGACAGACTCTCTAAGGGACATA with ID: 679 ORIGINAL GRAPH NODE: TGACAGACTCTCTAAGGGACATAT with ID: 680 ORIGINAL GRAPH NODE: GACAGACTCTCTAAGGGACATATG with ID: 681 ORIGINAL GRAPH NODE: ACAGACTCTCTAAGGGACATATGG with ID: 682 ORIGINAL GRAPH NODE: CAGACTCTCTAAGGGACATATGGG with ID: 683 ORIGINAL GRAPH NODE: AGACTCTCTAAGGGACATATGGGA with ID: 684 ORIGINAL GRAPH NODE: GACTCTCTAAGGGACATATGGGAG with ID: 685 ORIGINAL GRAPH NODE: ACTCTCTAAGGGACATATGGGAGC with ID: 686 ORIGINAL GRAPH NODE: CTCTCTAAGGGACATATGGGAGCT with ID: 687 ORIGINAL GRAPH NODE: TCTCTAAGGGACATATGGGAGCTA with ID: 688 ORIGINAL GRAPH NODE: CTCTAAGGGACATATGGGAGCTAC with ID: 689 ORIGINAL GRAPH NODE: TCTAAGGGACATATGGGAGCTACA with ID: 690 ORIGINAL GRAPH NODE: CTAAGGGACATATGGGAGCTACAT with ID: 691 ORIGINAL GRAPH NODE: TAAGGGACATATGGGAGCTACATA with ID: 692 ORIGINAL GRAPH NODE: AAGGGACATATGGGAGCTACATAG with ID: 693 ORIGINAL GRAPH NODE: AGGGACATATGGGAGCTACATAGC with ID: 694 ORIGINAL GRAPH NODE: GGGACATATGGGAGCTACATAGCC with ID: 695 ORIGINAL GRAPH NODE: GGACATATGGGAGCTACATAGCCA with ID: 696 ORIGINAL GRAPH NODE: GACATATGGGAGCTACATAGCCAG with ID: 697 ORIGINAL GRAPH NODE: ACATATGGGAGCTACATAGCCAGC with ID: 698 ORIGINAL GRAPH NODE: CATATGGGAGCTACATAGCCAGCC with ID: 699 ORIGINAL GRAPH NODE: ATATGGGAGCTACATAGCCAGCCC with ID: 700 ORIGINAL GRAPH NODE: TATGGGAGCTACATAGCCAGCCCC with ID: 701 ORIGINAL GRAPH NODE: ATGGGAGCTACATAGCCAGCCCCG with ID: 702 ORIGINAL GRAPH NODE: TGGGAGCTACATAGCCAGCCCCGT with ID: 703 ORIGINAL GRAPH NODE: GGGAGCTACATAGCCAGCCCCGTG with ID: 704 ORIGINAL GRAPH NODE: GGAGCTACATAGCCAGCCCCGTGG with ID: 705 ORIGINAL GRAPH NODE: GAGCTACATAGCCAGCCCCGTGGA with ID: 706 ORIGINAL GRAPH NODE: AGCTACATAGCCAGCCCCGTGGAG with ID: 707 ORIGINAL GRAPH NODE: GCTACATAGCCAGCCCCGTGGAGG with ID: 708 ORIGINAL GRAPH NODE: CTACATAGCCAGCCCCGTGGAGGG with ID: 709 ORIGINAL GRAPH NODE: TACATAGCCAGCCCCGTGGAGGGA with ID: 710 ORIGINAL GRAPH NODE: ACATAGCCAGCCCCGTGGAGGGAG with ID: 711 ORIGINAL GRAPH NODE: CATAGCCAGCCCCGTGGAGGGAGC with ID: 712 ORIGINAL GRAPH NODE: ATAGCCAGCCCCGTGGAGGGAGCC with ID: 713 ORIGINAL GRAPH NODE: TAGCCAGCCCCGTGGAGGGAGCCA with ID: 714 ORIGINAL GRAPH NODE: AGCCAGCCCCGTGGAGGGAGCCAC with ID: 715 ORIGINAL GRAPH NODE: GCCAGCCCCGTGGAGGGAGCCACC with ID: 716 ORIGINAL GRAPH NODE: CCAGCCCCGTGGAGGGAGCCACCA with ID: 717 ORIGINAL GRAPH NODE: CAGCCCCGTGGAGGGAGCCACCAG with ID: 718 ORIGINAL GRAPH NODE: AGCCCCGTGGAGGGAGCCACCAGC with ID: 719 ORIGINAL GRAPH NODE: GCCCCGTGGAGGGAGCCACCAGCC with ID: 720 ORIGINAL GRAPH NODE: CCCCGTGGAGGGAGCCACCAGCCA with ID: 721 ORIGINAL GRAPH NODE: CCCGTGGAGGGAGCCACCAGCCAC with ID: 722 ORIGINAL GRAPH NODE: CCGTGGAGGGAGCCACCAGCCACA with ID: 723 ORIGINAL GRAPH NODE: CGTGGAGGGAGCCACCAGCCACAG with ID: 724 ORIGINAL GRAPH NODE: GTGGAGGGAGCCACCAGCCACAGG with ID: 725 ORIGINAL GRAPH NODE: TGGAGGGAGCCACCAGCCACAGGT with ID: 726 ORIGINAL GRAPH NODE: GGAGGGAGCCACCAGCCACAGGTA with ID: 727 ORIGINAL GRAPH NODE: GAGGGAGCCACCAGCCACAGGTAC with ID: 728 ORIGINAL GRAPH NODE: AGGGAGCCACCAGCCACAGGTACC with ID: 729 ORIGINAL GRAPH NODE: GGGAGCCACCAGCCACAGGTACCT with ID: 730 ORIGINAL GRAPH NODE: GGAGCCACCAGCCACAGGTACCTG with ID: 731 ORIGINAL GRAPH NODE: GAGCCACCAGCCACAGGTACCTGA with ID: 732 ORIGINAL GRAPH NODE: AGCCACCAGCCACAGGTACCTGAT with ID: 733 ORIGINAL GRAPH NODE: GCCACCAGCCACAGGTACCTGATG with ID: 734 ORIGINAL GRAPH NODE: CCACCAGCCACAGGTACCTGATGG with ID: 735 ORIGINAL GRAPH NODE: CACCAGCCACAGGTACCTGATGGA with ID: 736 ORIGINAL GRAPH NODE: ACCAGCCACAGGTACCTGATGGAA with ID: 737 ORIGINAL GRAPH NODE: CCAGCCACAGGTACCTGATGGAAA with ID: 738 ORIGINAL GRAPH NODE: CAGCCACAGGTACCTGATGGAAAT with ID: 739 ORIGINAL GRAPH NODE: AGCCACAGGTACCTGATGGAAATG with ID: 740 ORIGINAL GRAPH NODE: GCCACAGGTACCTGATGGAAATGC with ID: 741 ORIGINAL GRAPH NODE: CCACAGGTACCTGATGGAAATGCC with ID: 742 ORIGINAL GRAPH NODE: CACAGGTACCTGATGGAAATGCCG with ID: 743 ORIGINAL GRAPH NODE: ACAGGTACCTGATGGAAATGCCGG with ID: 744 ORIGINAL GRAPH NODE: CAGGTACCTGATGGAAATGCCGGC with ID: 745 ORIGINAL GRAPH NODE: AGGTACCTGATGGAAATGCCGGCT with ID: 746 ORIGINAL GRAPH NODE: GGTACCTGATGGAAATGCCGGCTC with ID: 747 ORIGINAL GRAPH NODE: GTACCTGATGGAAATGCCGGCTCA with ID: 748 ORIGINAL GRAPH NODE: TACCTGATGGAAATGCCGGCTCAC with ID: 749 ORIGINAL GRAPH NODE: ACCTGATGGAAATGCCGGCTCACT with ID: 750 ORIGINAL GRAPH NODE: CCTGATGGAAATGCCGGCTCACTT with ID: 751 ORIGINAL GRAPH NODE: CTGATGGAAATGCCGGCTCACTTC with ID: 752 ORIGINAL GRAPH NODE: TGATGGAAATGCCGGCTCACTTCC with ID: 753 ORIGINAL GRAPH NODE: GATGGAAATGCCGGCTCACTTCCT with ID: 754 ORIGINAL GRAPH NODE: ATGGAAATGCCGGCTCACTTCCTG with ID: 755 ORIGINAL GRAPH NODE: TGGAAATGCCGGCTCACTTCCTGT with ID: 756 ORIGINAL GRAPH NODE: GGAAATGCCGGCTCACTTCCTGTG with ID: 757 ORIGINAL GRAPH NODE: GAAATGCCGGCTCACTTCCTGTGA with ID: 758 ORIGINAL GRAPH NODE: GCTAGGGGAAATAGGGGAGCTCCA with ID: 786 ORIGINAL GRAPH NODE: CTAGGGGAAATAGGGGAGCTCCAA with ID: 787 ORIGINAL GRAPH NODE: TAGGGGAAATAGGGGAGCTCCAAA with ID: 788 ORIGINAL GRAPH NODE: AGGGGAAATAGGGGAGCTCCAAAC with ID: 789 ORIGINAL GRAPH NODE: GGGGAAATAGGGGAGCTCCAAACC with ID: 790 ORIGINAL GRAPH NODE: GGGAAATAGGGGAGCTCCAAACCC with ID: 791 ORIGINAL GRAPH NODE: GGAAATAGGGGAGCTCCAAACCCA with ID: 792 ORIGINAL GRAPH NODE: GAAATAGGGGAGCTCCAAACCCAG with ID: 793 ORIGINAL GRAPH NODE: AAATAGGGGAGCTCCAAACCCAGC with ID: 794 ORIGINAL GRAPH NODE: AATAGGGGAGCTCCAAACCCAGCC with ID: 795 ORIGINAL GRAPH NODE: ATAGGGGAGCTCCAAACCCAGCCC with ID: 796 ORIGINAL GRAPH NODE: TAGGGGAGCTCCAAACCCAGCCCC with ID: 797 ORIGINAL GRAPH NODE: AGGGGAGCTCCAAACCCAGCCCCG with ID: 798 ORIGINAL GRAPH NODE: GGGGAGCTCCAAACCCAGCCCCGT with ID: 799 ORIGINAL GRAPH NODE: GGGAGCTCCAAACCCAGCCCCGTG with ID: 800 ORIGINAL GRAPH NODE: GGAGCTCCAAACCCAGCCCCGTGG with ID: 801 ORIGINAL GRAPH NODE: GAGCTCCAAACCCAGCCCCGTGGA with ID: 802 ORIGINAL GRAPH NODE: AGCTCCAAACCCAGCCCCGTGGAG with ID: 803 ORIGINAL GRAPH NODE: GCTCCAAACCCAGCCCCGTGGAGG with ID: 804 ORIGINAL GRAPH NODE: CTCCAAACCCAGCCCCGTGGAGGG with ID: 805 ORIGINAL GRAPH NODE: TCCAAACCCAGCCCCGTGGAGGGA with ID: 806 ORIGINAL GRAPH NODE: CCAAACCCAGCCCCGTGGAGGGAG with ID: 807 ORIGINAL GRAPH NODE: CAAACCCAGCCCCGTGGAGGGAGC with ID: 808 ORIGINAL GRAPH NODE: AAACCCAGCCCCGTGGAGGGAGCC with ID: 809 ORIGINAL GRAPH NODE: AACCCAGCCCCGTGGAGGGAGCCA with ID: 810 ORIGINAL GRAPH NODE: ACCCAGCCCCGTGGAGGGAGCCAC with ID: 811 ORIGINAL GRAPH NODE: CCCAGCCCCGTGGAGGGAGCCACC with ID: 812 ORIGINAL GRAPH NODE: GGAGCAGAGTTAGGAAGCTCCCTC with ID: 813 ORIGINAL GRAPH NODE: GAGCAGAGTTAGGAAGCTCCCTCA with ID: 814 ORIGINAL GRAPH NODE: AGCAGAGTTAGGAAGCTCCCTCAG with ID: 815 ORIGINAL GRAPH NODE: GCAGAGTTAGGAAGCTCCCTCAGC with ID: 816 ORIGINAL GRAPH NODE: CAGAGTTAGGAAGCTCCCTCAGCA with ID: 817 ORIGINAL GRAPH NODE: AGAGTTAGGAAGCTCCCTCAGCAC with ID: 818 ORIGINAL GRAPH NODE: GAGTTAGGAAGCTCCCTCAGCACT with ID: 819 ORIGINAL GRAPH NODE: AGTTAGGAAGCTCCCTCAGCACTC with ID: 820 ORIGINAL GRAPH NODE: GTTAGGAAGCTCCCTCAGCACTCT with ID: 821 ORIGINAL GRAPH NODE: TTAGGAAGCTCCCTCAGCACTCTG with ID: 822 ORIGINAL GRAPH NODE: TAGGAAGCTCCCTCAGCACTCTGA with ID: 823 ORIGINAL GRAPH NODE: AGGAAGCTCCCTCAGCACTCTGAA with ID: 824 ORIGINAL GRAPH NODE: GGAAGCTCCCTCAGCACTCTGAAC with ID: 825 ORIGINAL GRAPH NODE: GAAGCTCCCTCAGCACTCTGAACC with ID: 826 ORIGINAL GRAPH NODE: AAGCTCCCTCAGCACTCTGAACCC with ID: 827 ORIGINAL GRAPH NODE: AGCTCCCTCAGCACTCTGAACCCT with ID: 828 ORIGINAL GRAPH NODE: GCTCCCTCAGCACTCTGAACCCTG with ID: 829 ORIGINAL GRAPH NODE: CTCCCTCAGCACTCTGAACCCTGT with ID: 830 ORIGINAL GRAPH NODE: TCCCTCAGCACTCTGAACCCTGTG with ID: 831 ORIGINAL GRAPH NODE: CCCTCAGCACTCTGAACCCTGTGA with ID: 832 ORIGINAL GRAPH NODE: CCTCAGCACTCTGAACCCTGTGAG with ID: 833 ORIGINAL GRAPH NODE: CTCAGCACTCTGAACCCTGTGAGG with ID: 834 ORIGINAL GRAPH NODE: TCAGCACTCTGAACCCTGTGAGGC with ID: 835 ORIGINAL GRAPH NODE: CAGCACTCTGAACCCTGTGAGGCA with ID: 836 ORIGINAL GRAPH NODE: GGCTACAAACAGACTTCCTCAAGG with ID: 885 ORIGINAL GRAPH NODE: GCTACAAACAGACTTCCTCAAGGC with ID: 886 ORIGINAL GRAPH NODE: CTACAAACAGACTTCCTCAAGGCT with ID: 887 ORIGINAL GRAPH NODE: TACAAACAGACTTCCTCAAGGCTC with ID: 888 ORIGINAL GRAPH NODE: ACAAACAGACTTCCTCAAGGCTCA with ID: 889 ORIGINAL GRAPH NODE: CAAACAGACTTCCTCAAGGCTCAT with ID: 890 ORIGINAL GRAPH NODE: AAACAGACTTCCTCAAGGCTCATC with ID: 891 ORIGINAL GRAPH NODE: AACAGACTTCCTCAAGGCTCATCA with ID: 892 ORIGINAL GRAPH NODE: ACAGACTTCCTCAAGGCTCATCAG with ID: 893 ORIGINAL GRAPH NODE: CAGACTTCCTCAAGGCTCATCAGC with ID: 894 ORIGINAL GRAPH NODE: AGACTTCCTCAAGGCTCATCAGCA with ID: 895 ORIGINAL GRAPH NODE: GACTTCCTCAAGGCTCATCAGCAA with ID: 896 ORIGINAL GRAPH NODE: ACTTCCTCAAGGCTCATCAGCAAG with ID: 897 ORIGINAL GRAPH NODE: CTTCCTCAAGGCTCATCAGCAAGA with ID: 898 ORIGINAL GRAPH NODE: TTCCTCAAGGCTCATCAGCAAGAA with ID: 899 ORIGINAL GRAPH NODE: TCCTCAAGGCTCATCAGCAAGAAG with ID: 900 ORIGINAL GRAPH NODE: CCTCAAGGCTCATCAGCAAGAAGA with ID: 901 ORIGINAL GRAPH NODE: CTCAAGGCTCATCAGCAAGAAGAA with ID: 902 ORIGINAL GRAPH NODE: TCAAGGCTCATCAGCAAGAAGAAA with ID: 903 ORIGINAL GRAPH NODE: CAAGGCTCATCAGCAAGAAGAAAT with ID: 904 ORIGINAL GRAPH NODE: AAGGCTCATCAGCAAGAAGAAATC with ID: 905 ORIGINAL GRAPH NODE: AGGCTCATCAGCAAGAAGAAATCT with ID: 906 ORIGINAL GRAPH NODE: GGCTCATCAGCAAGAAGAAATCTT with ID: 907 ORIGINAL GRAPH NODE: GCTCATCAGCAAGAAGAAATCTTT with ID: 908 ORIGINAL GRAPH NODE: AGAATACAAAATGCCTTCCTCCAG with ID: 945 ORIGINAL GRAPH NODE: GAATACAAAATGCCTTCCTCCAGC with ID: 946 ORIGINAL GRAPH NODE: AATACAAAATGCCTTCCTCCAGCC with ID: 947 ORIGINAL GRAPH NODE: ATACAAAATGCCTTCCTCCAGCCT with ID: 948 ORIGINAL GRAPH NODE: TACAAAATGCCTTCCTCCAGCCTC with ID: 949 ORIGINAL GRAPH NODE: ACAAAATGCCTTCCTCCAGCCTCA with ID: 950 ORIGINAL GRAPH NODE: CAAAATGCCTTCCTCCAGCCTCAT with ID: 951 ORIGINAL GRAPH NODE: AAAATGCCTTCCTCCAGCCTCATC with ID: 952 ORIGINAL GRAPH NODE: AAATGCCTTCCTCCAGCCTCATCA with ID: 953 ORIGINAL GRAPH NODE: AATGCCTTCCTCCAGCCTCATCAG with ID: 954 ORIGINAL GRAPH NODE: ATGCCTTCCTCCAGCCTCATCAGC with ID: 955 ORIGINAL GRAPH NODE: TGCCTTCCTCCAGCCTCATCAGCA with ID: 956 ORIGINAL GRAPH NODE: GCCTTCCTCCAGCCTCATCAGCAG with ID: 957 ORIGINAL GRAPH NODE: CCTTCCTCCAGCCTCATCAGCAGG with ID: 958 ORIGINAL GRAPH NODE: CTTCCTCCAGCCTCATCAGCAGGA with ID: 959 ORIGINAL GRAPH NODE: TTCCTCCAGCCTCATCAGCAGGAA with ID: 960 ORIGINAL GRAPH NODE: TCCTCCAGCCTCATCAGCAGGAAG with ID: 961 ORIGINAL GRAPH NODE: CCTCCAGCCTCATCAGCAGGAAGA with ID: 962 ORIGINAL GRAPH NODE: CTCCAGCCTCATCAGCAGGAAGAA with ID: 963 ORIGINAL GRAPH NODE: TCCAGCCTCATCAGCAGGAAGAAA with ID: 964 ORIGINAL GRAPH NODE: CCAGCCTCATCAGCAGGAAGAAAT with ID: 965 ORIGINAL GRAPH NODE: CAGCCTCATCAGCAGGAAGAAATC with ID: 966 ORIGINAL GRAPH NODE: AGCCTCATCAGCAGGAAGAAATCT with ID: 967 ORIGINAL GRAPH NODE: GCCTCATCAGCAGGAAGAAATCTT with ID: 968 ORIGINAL GRAPH NODE: CCTCATCAGCAGGAAGAAATCTTT with ID: 969 ORIGINAL GRAPH NODE: CTCATCAGCAGGAAGAAATCTTTC with ID: 970 ORIGINAL GRAPH NODE: TCATCAGCAGGAAGAAATCTTTCT with ID: 971 ORIGINAL GRAPH NODE: CATCAGCAGGAAGAAATCTTTCTT with ID: 972 ORIGINAL GRAPH NODE: ATCAGCAGGAAGAAATCTTTCTTT with ID: 973 ORIGINAL GRAPH NODE: TCAGCAGGAAGAAATCTTTCTTTC with ID: 974 ORIGINAL GRAPH NODE: CAGCAGGAAGAAATCTTTCTTTCC with ID: 975 ORIGINAL GRAPH NODE: AGCAGGAAGAAATCTTTCTTTCCA with ID: 976 ORIGINAL GRAPH NODE: GCAGGAAGAAATCTTTCTTTCCAA with ID: 977 ORIGINAL GRAPH NODE: CAGGAAGAAATCTTTCTTTCCAAG with ID: 978 ORIGINAL GRAPH NODE: AGGAAGAAATCTTTCTTTCCAAGT with ID: 979 ORIGINAL GRAPH NODE: GGAAGAAATCTTTCTTTCCAAGTA with ID: 980 fixExtremeleyHighSingleEdges() fixExtremelyHighSingleEdges() removeLightEdges() removeLightEdges() SECTION ================= REMOVING LIGHT In EDGES ================= SECTION ================= REMOVING LIGHT OUT EDGES ================= SECTION ================= REMOVING LIGHT FLOW EDGES ================= FLOW: total in for vertex GGCCACACGATGGCTTATCACGTC:W0(V380_D-1) is 0, total out is 2, averageCov=0 FLOW: total in for vertex C:W-1(V381_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V382_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V383_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V384_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V385_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V386_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V387_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V388_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V389_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V390_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V391_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V392_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V393_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V394_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V395_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V396_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V397_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V398_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V399_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V400_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V401_D-1) is 2, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V402_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V403_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V404_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V405_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V406_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex T:W-1(V407_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex T:W-1(V408_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V409_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V410_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex T:W-1(V411_D-1) is 4, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V412_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V413_D-1) is 6, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V414_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V415_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V416_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V417_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V418_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V419_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V420_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V421_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V422_D-1) is 6, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V423_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V424_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V425_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V426_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V427_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V428_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V429_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V430_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V431_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V432_D-1) is 8, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V433_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V434_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V435_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V436_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V437_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V438_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V439_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V440_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V441_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V442_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V443_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V444_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V445_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V446_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V447_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V448_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V449_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V450_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V451_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex T:W-1(V452_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex G:W-1(V453_D-1) is 10, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V454_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V455_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V456_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V457_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V458_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V459_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V460_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V461_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V462_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V463_D-1) is 8, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V464_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V465_D-1) is 6, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V466_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V467_D-1) is 4, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V468_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V469_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V470_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V471_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V472_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V473_D-1) is 2, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V474_D-1) is 4, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V475_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V476_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V477_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V478_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V479_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V480_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V481_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V482_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V483_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V484_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V485_D-1) is 2, total out is 4, averageCov=-1 FLOW: total in for vertex T:W-1(V486_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V487_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V488_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V489_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V490_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V491_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V492_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V493_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V494_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex T:W-1(V495_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex T:W-1(V496_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V497_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V498_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V499_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V500_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V501_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V502_D-1) is 4, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V503_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V504_D-1) is 6, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V505_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V506_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V507_D-1) is 8, total out is 10, averageCov=-1 FLOW: total in for vertex G:W-1(V508_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex A:W-1(V509_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex G:W-1(V510_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex T:W-1(V511_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex T:W-1(V512_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex A:W-1(V513_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex G:W-1(V514_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex G:W-1(V515_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex A:W-1(V516_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex A:W-1(V517_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex G:W-1(V518_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex C:W-1(V519_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex T:W-1(V520_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex C:W-1(V521_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex C:W-1(V522_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex C:W-1(V523_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex T:W-1(V524_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex G:W-1(V525_D-1) is 8, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V526_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V527_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V528_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V529_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V530_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V531_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V532_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V533_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V534_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V535_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V536_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V537_D-1) is 6, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V538_D-1) is 4, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V539_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V540_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V541_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V542_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V543_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V544_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V545_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V546_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V547_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V548_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V549_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V550_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V551_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V552_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V553_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V554_D-1) is 8, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V555_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V556_D-1) is 6, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V557_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V558_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V559_D-1) is 4, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V560_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V561_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V562_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V563_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V564_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V565_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V566_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V567_D-1) is 2, total out is 4, averageCov=-1 FLOW: total in for vertex T:W-1(V568_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V569_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V570_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V571_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V572_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V573_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V574_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V575_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V576_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V577_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V578_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V579_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V580_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex T:W-1(V581_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V582_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex T:W-1(V583_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V584_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V585_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex T:W-1(V586_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V587_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V588_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V589_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V590_D-1) is 4, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V591_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V592_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V593_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V594_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V595_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V596_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V597_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V598_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V599_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V600_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V601_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V602_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V603_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V604_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V605_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V606_D-1) is 2, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V607_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V608_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V609_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V610_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V611_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V612_D-1) is 4, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V613_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V614_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V615_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V616_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V617_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V618_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V619_D-1) is 6, total out is 4, averageCov=-1 FLOW: total in for vertex T:W-1(V620_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V621_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V622_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex T:W-1(V623_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex T:W-1(V624_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V625_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V626_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V627_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V628_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V629_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V630_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V631_D-1) is 4, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V632_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V633_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V634_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V635_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V636_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V637_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V638_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V639_D-1) is 6, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V640_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V641_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V642_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V643_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V644_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V645_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V646_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V647_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V648_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V649_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V650_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V651_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V652_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V653_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V654_D-1) is 8, total out is 10, averageCov=-1 FLOW: total in for vertex G:W-1(V655_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex A:W-1(V656_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex T:W-1(V657_D-1) is 10, total out is 12, averageCov=-1 FLOW: total in for vertex G:W-1(V658_D-1) is 12, total out is 10, averageCov=-1 FLOW: total in for vertex A:W-1(V659_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex C:W-1(V660_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex A:W-1(V661_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex G:W-1(V662_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex A:W-1(V663_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex C:W-1(V664_D-1) is 10, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V665_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V666_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V667_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V668_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V669_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V670_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V671_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V672_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V673_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V674_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V675_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V676_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V677_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V678_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V679_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V680_D-1) is 8, total out is 10, averageCov=-1 FLOW: total in for vertex G:W-1(V681_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex G:W-1(V682_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex G:W-1(V683_D-1) is 10, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V684_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V685_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V686_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V687_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V688_D-1) is 8, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V689_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V690_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V691_D-1) is 6, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V692_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V693_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V694_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V695_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V696_D-1) is 4, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V697_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V698_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V699_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V700_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V701_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V702_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V703_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V704_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V705_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V706_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V707_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V708_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V709_D-1) is 6, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V710_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V711_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V712_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V713_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V714_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V715_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V716_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V717_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V718_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V719_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V720_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V721_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V722_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V723_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V724_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V725_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V726_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V727_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V728_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V729_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V730_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V731_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V732_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V733_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V734_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V735_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V736_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V737_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V738_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V739_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V740_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V741_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V742_D-1) is 6, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V743_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V744_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V745_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex T:W-1(V746_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V747_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V748_D-1) is 4, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V749_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V750_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V751_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V752_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V753_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V754_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V755_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V756_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V757_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V758_D-1) is 2, total out is 0, averageCov=-1 FLOW: total in for vertex GCTAGGGGAAATAGGGGAGCTCCA:W0(V786_D-1) is 0, total out is 2, averageCov=0 FLOW: total in for vertex A:W-1(V787_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V788_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V789_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V790_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V791_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V792_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V793_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V794_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V795_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V796_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V797_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V798_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V799_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V800_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V801_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V802_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V803_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V804_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V805_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V806_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V807_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V808_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V809_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V810_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V811_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V812_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V813_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V814_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V815_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V816_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V817_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V818_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V819_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V820_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V821_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V822_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V823_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V824_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V825_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V826_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V827_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V828_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V829_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V830_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V831_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V832_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V833_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V834_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V835_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V836_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V885_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V886_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V887_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V888_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V889_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V890_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V891_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V892_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V893_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V894_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V895_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V896_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V897_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V898_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V899_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V900_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V901_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V902_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V903_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V904_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V905_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V906_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V907_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V908_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex AGAATACAAAATGCCTTCCTCCAG:W0(V945_D-1) is 0, total out is 2, averageCov=0 FLOW: total in for vertex C:W-1(V946_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V947_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V948_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V949_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V950_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V951_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V952_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V953_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V954_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V955_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V956_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V957_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V958_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V959_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V960_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V961_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V962_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V963_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V964_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V965_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V966_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V967_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V968_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V969_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V970_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V971_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V972_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V973_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V974_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V975_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V976_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V977_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V978_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V979_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V980_D-1) is 2, total out is 2, averageCov=-1 ## Node descriptions before linear compaction: ## Node descriptions: GGCCACACGATGGCTTATCACGTC:W0(V380_D-1) Preds: [] Succ: [C:W-1(V381_D-1) ] C:W-1(V381_D-1) Preds: [GGCCACACGATGGCTTATCACGTC:W0(V380_D-1) ] Succ: [A:W-1(V382_D-1) ] A:W-1(V382_D-1) Preds: [C:W-1(V381_D-1) ] Succ: [C:W-1(V383_D-1) ] C:W-1(V383_D-1) Preds: [A:W-1(V382_D-1) ] Succ: [A:W-1(V384_D-1) ] A:W-1(V384_D-1) Preds: [C:W-1(V383_D-1) ] Succ: [T:W-1(V385_D-1) ] T:W-1(V385_D-1) Preds: [A:W-1(V384_D-1) ] Succ: [T:W-1(V386_D-1) ] T:W-1(V386_D-1) Preds: [T:W-1(V385_D-1) ] Succ: [T:W-1(V387_D-1) ] T:W-1(V387_D-1) Preds: [T:W-1(V386_D-1) ] Succ: [C:W-1(V388_D-1) ] C:W-1(V388_D-1) Preds: [T:W-1(V387_D-1) ] Succ: [T:W-1(V389_D-1) ] T:W-1(V389_D-1) Preds: [C:W-1(V388_D-1) ] Succ: [A:W-1(V390_D-1) ] A:W-1(V390_D-1) Preds: [T:W-1(V389_D-1) ] Succ: [C:W-1(V391_D-1) ] C:W-1(V391_D-1) Preds: [A:W-1(V390_D-1) ] Succ: [T:W-1(V392_D-1) ] T:W-1(V392_D-1) Preds: [C:W-1(V391_D-1) ] Succ: [G:W-1(V393_D-1) ] G:W-1(V393_D-1) Preds: [T:W-1(V392_D-1) ] Succ: [G:W-1(V394_D-1) ] G:W-1(V394_D-1) Preds: [G:W-1(V393_D-1) ] Succ: [C:W-1(V395_D-1) ] C:W-1(V395_D-1) Preds: [G:W-1(V394_D-1) ] Succ: [T:W-1(V396_D-1) ] T:W-1(V396_D-1) Preds: [C:W-1(V395_D-1) ] Succ: [A:W-1(V397_D-1) ] A:W-1(V397_D-1) Preds: [T:W-1(V396_D-1) ] Succ: [C:W-1(V398_D-1) ] C:W-1(V398_D-1) Preds: [A:W-1(V397_D-1) ] Succ: [A:W-1(V399_D-1) ] A:W-1(V399_D-1) Preds: [C:W-1(V398_D-1) ] Succ: [A:W-1(V400_D-1) ] A:W-1(V400_D-1) Preds: [A:W-1(V399_D-1) ] Succ: [A:W-1(V401_D-1) ] A:W-1(V401_D-1) Preds: [A:W-1(V400_D-1) ] Succ: [C:W-1(V402_D-1) ] C:W-1(V402_D-1) Preds: [A:W-1(V401_D-1) ] Succ: [A:W-1(V403_D-1) ] A:W-1(V403_D-1) Preds: [C:W-1(V402_D-1) ] Succ: [G:W-1(V404_D-1) ] G:W-1(V404_D-1) Preds: [A:W-1(V403_D-1) ] Succ: [A:W-1(V405_D-1) ] A:W-1(V405_D-1) Preds: [G:W-1(V404_D-1) ] Succ: [C:W-1(V406_D-1) ] C:W-1(V406_D-1) Preds: [A:W-1(V405_D-1) ] Succ: [T:W-1(V407_D-1) ] T:W-1(V407_D-1) Preds: [C:W-1(V406_D-1) ] Succ: [T:W-1(V408_D-1) ] T:W-1(V408_D-1) Preds: [T:W-1(V407_D-1) ] Succ: [C:W-1(V409_D-1) ] C:W-1(V409_D-1) Preds: [T:W-1(V408_D-1) ] Succ: [C:W-1(V410_D-1) ] C:W-1(V410_D-1) Preds: [C:W-1(V409_D-1) ] Succ: [T:W-1(V411_D-1) ] T:W-1(V411_D-1) Preds: [C:W-1(V410_D-1) ] Succ: [C:W-1(V412_D-1) ] C:W-1(V412_D-1) Preds: [T:W-1(V411_D-1) ] Succ: [A:W-1(V413_D-1) ] A:W-1(V413_D-1) Preds: [C:W-1(V412_D-1) ] Succ: [A:W-1(V414_D-1) ] A:W-1(V414_D-1) Preds: [A:W-1(V413_D-1) ] Succ: [G:W-1(V415_D-1) ] G:W-1(V415_D-1) Preds: [A:W-1(V414_D-1) ] Succ: [C:W-1(V416_D-1) G:W-1(V885_D-1) ] C:W-1(V416_D-1) Preds: [G:W-1(V415_D-1) ] Succ: [C:W-1(V417_D-1) ] C:W-1(V417_D-1) Preds: [C:W-1(V416_D-1) ] Succ: [T:W-1(V418_D-1) ] T:W-1(V418_D-1) Preds: [C:W-1(V417_D-1) ] Succ: [C:W-1(V419_D-1) ] C:W-1(V419_D-1) Preds: [T:W-1(V418_D-1) ] Succ: [A:W-1(V420_D-1) ] A:W-1(V420_D-1) Preds: [C:W-1(V419_D-1) ] Succ: [T:W-1(V421_D-1) ] T:W-1(V421_D-1) Preds: [A:W-1(V420_D-1) ] Succ: [C:W-1(V422_D-1) ] C:W-1(V422_D-1) Preds: [T:W-1(V421_D-1) ] Succ: [A:W-1(V423_D-1) ] A:W-1(V423_D-1) Preds: [C:W-1(V422_D-1) ] Succ: [G:W-1(V424_D-1) ] G:W-1(V424_D-1) Preds: [A:W-1(V423_D-1) ] Succ: [C:W-1(V425_D-1) ] C:W-1(V425_D-1) Preds: [G:W-1(V424_D-1) ] Succ: [A:W-1(V426_D-1) ] A:W-1(V426_D-1) Preds: [C:W-1(V425_D-1) ] Succ: [A:W-1(V427_D-1) ] A:W-1(V427_D-1) Preds: [A:W-1(V426_D-1) ] Succ: [G:W-1(V428_D-1) ] G:W-1(V428_D-1) Preds: [A:W-1(V427_D-1) ] Succ: [A:W-1(V429_D-1) ] A:W-1(V429_D-1) Preds: [G:W-1(V428_D-1) ] Succ: [A:W-1(V430_D-1) ] A:W-1(V430_D-1) Preds: [A:W-1(V429_D-1) ] Succ: [G:W-1(V431_D-1) ] G:W-1(V431_D-1) Preds: [A:W-1(V430_D-1) ] Succ: [A:W-1(V432_D-1) ] A:W-1(V432_D-1) Preds: [G:W-1(V431_D-1) ] Succ: [A:W-1(V433_D-1) ] A:W-1(V433_D-1) Preds: [A:W-1(V432_D-1) ] Succ: [A:W-1(V434_D-1) ] A:W-1(V434_D-1) Preds: [A:W-1(V433_D-1) ] Succ: [T:W-1(V435_D-1) ] T:W-1(V435_D-1) Preds: [A:W-1(V434_D-1) ] Succ: [C:W-1(V436_D-1) ] C:W-1(V436_D-1) Preds: [T:W-1(V435_D-1) ] Succ: [T:W-1(V437_D-1) ] T:W-1(V437_D-1) Preds: [C:W-1(V436_D-1) ] Succ: [T:W-1(V438_D-1) ] T:W-1(V438_D-1) Preds: [T:W-1(V437_D-1) ] Succ: [T:W-1(V439_D-1) ] T:W-1(V439_D-1) Preds: [T:W-1(V438_D-1) ] Succ: [C:W-1(V440_D-1) ] C:W-1(V440_D-1) Preds: [T:W-1(V439_D-1) T:W-1(V908_D-1) ] Succ: [T:W-1(V441_D-1) ] T:W-1(V441_D-1) Preds: [C:W-1(V440_D-1) ] Succ: [T:W-1(V442_D-1) ] T:W-1(V442_D-1) Preds: [T:W-1(V441_D-1) ] Succ: [T:W-1(V443_D-1) ] T:W-1(V443_D-1) Preds: [T:W-1(V442_D-1) ] Succ: [C:W-1(V444_D-1) ] C:W-1(V444_D-1) Preds: [T:W-1(V443_D-1) ] Succ: [C:W-1(V445_D-1) ] C:W-1(V445_D-1) Preds: [C:W-1(V444_D-1) ] Succ: [A:W-1(V446_D-1) ] A:W-1(V446_D-1) Preds: [C:W-1(V445_D-1) ] Succ: [A:W-1(V447_D-1) ] A:W-1(V447_D-1) Preds: [A:W-1(V446_D-1) ] Succ: [G:W-1(V448_D-1) ] G:W-1(V448_D-1) Preds: [A:W-1(V447_D-1) ] Succ: [T:W-1(V449_D-1) ] T:W-1(V449_D-1) Preds: [G:W-1(V448_D-1) ] Succ: [A:W-1(V450_D-1) ] A:W-1(V450_D-1) Preds: [T:W-1(V449_D-1) ] Succ: [G:W-1(V451_D-1) ] G:W-1(V451_D-1) Preds: [A:W-1(V450_D-1) A:W-1(V980_D-1) ] Succ: [T:W-1(V452_D-1) ] T:W-1(V452_D-1) Preds: [G:W-1(V451_D-1) ] Succ: [G:W-1(V453_D-1) ] G:W-1(V453_D-1) Preds: [T:W-1(V452_D-1) ] Succ: [T:W-1(V454_D-1) ] T:W-1(V454_D-1) Preds: [G:W-1(V453_D-1) ] Succ: [C:W-1(V455_D-1) ] C:W-1(V455_D-1) Preds: [T:W-1(V454_D-1) ] Succ: [T:W-1(V456_D-1) ] T:W-1(V456_D-1) Preds: [C:W-1(V455_D-1) ] Succ: [T:W-1(V457_D-1) ] T:W-1(V457_D-1) Preds: [T:W-1(V456_D-1) ] Succ: [A:W-1(V458_D-1) ] A:W-1(V458_D-1) Preds: [T:W-1(V457_D-1) ] Succ: [A:W-1(V459_D-1) ] A:W-1(V459_D-1) Preds: [A:W-1(V458_D-1) ] Succ: [C:W-1(V460_D-1) ] C:W-1(V460_D-1) Preds: [A:W-1(V459_D-1) ] Succ: [T:W-1(V461_D-1) ] T:W-1(V461_D-1) Preds: [C:W-1(V460_D-1) ] Succ: [C:W-1(V462_D-1) ] C:W-1(V462_D-1) Preds: [T:W-1(V461_D-1) ] Succ: [A:W-1(V463_D-1) ] A:W-1(V463_D-1) Preds: [C:W-1(V462_D-1) ] Succ: [G:W-1(V464_D-1) ] G:W-1(V464_D-1) Preds: [A:W-1(V463_D-1) ] Succ: [G:W-1(V465_D-1) ] G:W-1(V465_D-1) Preds: [G:W-1(V464_D-1) ] Succ: [A:W-1(V466_D-1) ] A:W-1(V466_D-1) Preds: [G:W-1(V465_D-1) ] Succ: [G:W-1(V467_D-1) ] G:W-1(V467_D-1) Preds: [A:W-1(V466_D-1) ] Succ: [A:W-1(V468_D-1) ] A:W-1(V468_D-1) Preds: [G:W-1(V467_D-1) ] Succ: [T:W-1(V469_D-1) ] T:W-1(V469_D-1) Preds: [A:W-1(V468_D-1) ] Succ: [C:W-1(V470_D-1) ] C:W-1(V470_D-1) Preds: [T:W-1(V469_D-1) ] Succ: [A:W-1(V471_D-1) ] A:W-1(V471_D-1) Preds: [C:W-1(V470_D-1) ] Succ: [T:W-1(V472_D-1) ] T:W-1(V472_D-1) Preds: [A:W-1(V471_D-1) ] Succ: [G:W-1(V473_D-1) ] G:W-1(V473_D-1) Preds: [T:W-1(V472_D-1) ] Succ: [G:W-1(V474_D-1) ] G:W-1(V474_D-1) Preds: [G:W-1(V473_D-1) ] Succ: [T:W-1(V475_D-1) ] T:W-1(V475_D-1) Preds: [G:W-1(V474_D-1) ] Succ: [A:W-1(V476_D-1) ] A:W-1(V476_D-1) Preds: [T:W-1(V475_D-1) ] Succ: [G:W-1(V477_D-1) ] G:W-1(V477_D-1) Preds: [A:W-1(V476_D-1) ] Succ: [G:W-1(V478_D-1) ] G:W-1(V478_D-1) Preds: [G:W-1(V477_D-1) ] Succ: [G:W-1(V479_D-1) ] G:W-1(V479_D-1) Preds: [G:W-1(V478_D-1) ] Succ: [A:W-1(V480_D-1) ] A:W-1(V480_D-1) Preds: [G:W-1(V479_D-1) ] Succ: [A:W-1(V481_D-1) ] A:W-1(V481_D-1) Preds: [A:W-1(V480_D-1) ] Succ: [G:W-1(V482_D-1) ] G:W-1(V482_D-1) Preds: [A:W-1(V481_D-1) ] Succ: [G:W-1(V483_D-1) ] G:W-1(V483_D-1) Preds: [G:W-1(V482_D-1) ] Succ: [G:W-1(V484_D-1) ] G:W-1(V484_D-1) Preds: [G:W-1(V483_D-1) ] Succ: [G:W-1(V485_D-1) ] G:W-1(V485_D-1) Preds: [G:W-1(V484_D-1) ] Succ: [T:W-1(V486_D-1) ] T:W-1(V486_D-1) Preds: [G:W-1(V485_D-1) ] Succ: [C:W-1(V487_D-1) ] C:W-1(V487_D-1) Preds: [T:W-1(V486_D-1) ] Succ: [A:W-1(V488_D-1) ] A:W-1(V488_D-1) Preds: [C:W-1(V487_D-1) ] Succ: [G:W-1(V489_D-1) ] G:W-1(V489_D-1) Preds: [A:W-1(V488_D-1) ] Succ: [G:W-1(V490_D-1) ] G:W-1(V490_D-1) Preds: [G:W-1(V489_D-1) ] Succ: [C:W-1(V491_D-1) ] C:W-1(V491_D-1) Preds: [G:W-1(V490_D-1) ] Succ: [C:W-1(V492_D-1) ] C:W-1(V492_D-1) Preds: [C:W-1(V491_D-1) ] Succ: [A:W-1(V493_D-1) ] A:W-1(V493_D-1) Preds: [C:W-1(V492_D-1) ] Succ: [C:W-1(V494_D-1) ] C:W-1(V494_D-1) Preds: [A:W-1(V493_D-1) ] Succ: [T:W-1(V495_D-1) ] T:W-1(V495_D-1) Preds: [C:W-1(V494_D-1) ] Succ: [T:W-1(V496_D-1) ] T:W-1(V496_D-1) Preds: [T:W-1(V495_D-1) ] Succ: [C:W-1(V497_D-1) ] C:W-1(V497_D-1) Preds: [T:W-1(V496_D-1) ] Succ: [A:W-1(V498_D-1) ] A:W-1(V498_D-1) Preds: [C:W-1(V497_D-1) ] Succ: [C:W-1(V499_D-1) ] C:W-1(V499_D-1) Preds: [A:W-1(V498_D-1) ] Succ: [A:W-1(V500_D-1) ] A:W-1(V500_D-1) Preds: [C:W-1(V499_D-1) ] Succ: [A:W-1(V501_D-1) ] A:W-1(V501_D-1) Preds: [A:W-1(V500_D-1) ] Succ: [G:W-1(V502_D-1) ] G:W-1(V502_D-1) Preds: [A:W-1(V501_D-1) ] Succ: [G:W-1(V503_D-1) ] G:W-1(V503_D-1) Preds: [G:W-1(V502_D-1) ] Succ: [A:W-1(V504_D-1) ] A:W-1(V504_D-1) Preds: [G:W-1(V503_D-1) ] Succ: [G:W-1(V505_D-1) ] G:W-1(V505_D-1) Preds: [A:W-1(V504_D-1) ] Succ: [C:W-1(V506_D-1) ] C:W-1(V506_D-1) Preds: [G:W-1(V505_D-1) ] Succ: [A:W-1(V507_D-1) ] A:W-1(V507_D-1) Preds: [C:W-1(V506_D-1) ] Succ: [G:W-1(V508_D-1) ] G:W-1(V508_D-1) Preds: [A:W-1(V507_D-1) ] Succ: [A:W-1(V509_D-1) ] A:W-1(V509_D-1) Preds: [G:W-1(V508_D-1) ] Succ: [G:W-1(V510_D-1) ] G:W-1(V510_D-1) Preds: [A:W-1(V509_D-1) ] Succ: [T:W-1(V511_D-1) ] T:W-1(V511_D-1) Preds: [G:W-1(V510_D-1) ] Succ: [T:W-1(V512_D-1) ] T:W-1(V512_D-1) Preds: [T:W-1(V511_D-1) ] Succ: [A:W-1(V513_D-1) ] A:W-1(V513_D-1) Preds: [T:W-1(V512_D-1) ] Succ: [G:W-1(V514_D-1) ] G:W-1(V514_D-1) Preds: [A:W-1(V513_D-1) ] Succ: [G:W-1(V515_D-1) ] G:W-1(V515_D-1) Preds: [G:W-1(V514_D-1) ] Succ: [A:W-1(V516_D-1) ] A:W-1(V516_D-1) Preds: [G:W-1(V515_D-1) ] Succ: [A:W-1(V517_D-1) ] A:W-1(V517_D-1) Preds: [A:W-1(V516_D-1) ] Succ: [G:W-1(V518_D-1) ] G:W-1(V518_D-1) Preds: [A:W-1(V517_D-1) ] Succ: [C:W-1(V519_D-1) ] C:W-1(V519_D-1) Preds: [G:W-1(V518_D-1) ] Succ: [T:W-1(V520_D-1) ] T:W-1(V520_D-1) Preds: [C:W-1(V519_D-1) ] Succ: [C:W-1(V521_D-1) ] C:W-1(V521_D-1) Preds: [T:W-1(V520_D-1) ] Succ: [C:W-1(V522_D-1) ] C:W-1(V522_D-1) Preds: [C:W-1(V521_D-1) ] Succ: [C:W-1(V523_D-1) ] C:W-1(V523_D-1) Preds: [C:W-1(V522_D-1) ] Succ: [T:W-1(V524_D-1) ] T:W-1(V524_D-1) Preds: [C:W-1(V523_D-1) ] Succ: [G:W-1(V525_D-1) C:W-1(V813_D-1) ] G:W-1(V525_D-1) Preds: [T:W-1(V524_D-1) ] Succ: [A:W-1(V526_D-1) ] A:W-1(V526_D-1) Preds: [G:W-1(V525_D-1) ] Succ: [G:W-1(V527_D-1) ] G:W-1(V527_D-1) Preds: [A:W-1(V526_D-1) ] Succ: [C:W-1(V528_D-1) ] C:W-1(V528_D-1) Preds: [G:W-1(V527_D-1) ] Succ: [A:W-1(V529_D-1) ] A:W-1(V529_D-1) Preds: [C:W-1(V528_D-1) ] Succ: [C:W-1(V530_D-1) ] C:W-1(V530_D-1) Preds: [A:W-1(V529_D-1) ] Succ: [T:W-1(V531_D-1) ] T:W-1(V531_D-1) Preds: [C:W-1(V530_D-1) ] Succ: [C:W-1(V532_D-1) ] C:W-1(V532_D-1) Preds: [T:W-1(V531_D-1) ] Succ: [T:W-1(V533_D-1) ] T:W-1(V533_D-1) Preds: [C:W-1(V532_D-1) ] Succ: [G:W-1(V534_D-1) ] G:W-1(V534_D-1) Preds: [T:W-1(V533_D-1) ] Succ: [A:W-1(V535_D-1) ] A:W-1(V535_D-1) Preds: [G:W-1(V534_D-1) ] Succ: [A:W-1(V536_D-1) ] A:W-1(V536_D-1) Preds: [A:W-1(V535_D-1) ] Succ: [C:W-1(V537_D-1) ] C:W-1(V537_D-1) Preds: [A:W-1(V536_D-1) ] Succ: [C:W-1(V538_D-1) ] C:W-1(V538_D-1) Preds: [C:W-1(V537_D-1) ] Succ: [C:W-1(V539_D-1) ] C:W-1(V539_D-1) Preds: [C:W-1(V538_D-1) ] Succ: [T:W-1(V540_D-1) ] T:W-1(V540_D-1) Preds: [C:W-1(V539_D-1) ] Succ: [G:W-1(V541_D-1) ] G:W-1(V541_D-1) Preds: [T:W-1(V540_D-1) ] Succ: [T:W-1(V542_D-1) ] T:W-1(V542_D-1) Preds: [G:W-1(V541_D-1) ] Succ: [G:W-1(V543_D-1) ] G:W-1(V543_D-1) Preds: [T:W-1(V542_D-1) ] Succ: [A:W-1(V544_D-1) ] A:W-1(V544_D-1) Preds: [G:W-1(V543_D-1) ] Succ: [G:W-1(V545_D-1) ] G:W-1(V545_D-1) Preds: [A:W-1(V544_D-1) ] Succ: [G:W-1(V546_D-1) ] G:W-1(V546_D-1) Preds: [G:W-1(V545_D-1) ] Succ: [C:W-1(V547_D-1) ] C:W-1(V547_D-1) Preds: [G:W-1(V546_D-1) ] Succ: [A:W-1(V548_D-1) ] A:W-1(V548_D-1) Preds: [C:W-1(V547_D-1) ] Succ: [A:W-1(V549_D-1) ] A:W-1(V549_D-1) Preds: [A:W-1(V548_D-1) A:W-1(V836_D-1) ] Succ: [G:W-1(V550_D-1) ] G:W-1(V550_D-1) Preds: [A:W-1(V549_D-1) ] Succ: [T:W-1(V551_D-1) ] T:W-1(V551_D-1) Preds: [G:W-1(V550_D-1) ] Succ: [C:W-1(V552_D-1) ] C:W-1(V552_D-1) Preds: [T:W-1(V551_D-1) ] Succ: [C:W-1(V553_D-1) ] C:W-1(V553_D-1) Preds: [C:W-1(V552_D-1) ] Succ: [A:W-1(V554_D-1) ] A:W-1(V554_D-1) Preds: [C:W-1(V553_D-1) ] Succ: [C:W-1(V555_D-1) ] C:W-1(V555_D-1) Preds: [A:W-1(V554_D-1) ] Succ: [C:W-1(V556_D-1) ] C:W-1(V556_D-1) Preds: [C:W-1(V555_D-1) ] Succ: [A:W-1(V557_D-1) ] A:W-1(V557_D-1) Preds: [C:W-1(V556_D-1) ] Succ: [C:W-1(V558_D-1) ] C:W-1(V558_D-1) Preds: [A:W-1(V557_D-1) ] Succ: [C:W-1(V559_D-1) ] C:W-1(V559_D-1) Preds: [C:W-1(V558_D-1) ] Succ: [A:W-1(V560_D-1) ] A:W-1(V560_D-1) Preds: [C:W-1(V559_D-1) ] Succ: [G:W-1(V561_D-1) ] G:W-1(V561_D-1) Preds: [A:W-1(V560_D-1) ] Succ: [C:W-1(V562_D-1) ] C:W-1(V562_D-1) Preds: [G:W-1(V561_D-1) ] Succ: [G:W-1(V563_D-1) ] G:W-1(V563_D-1) Preds: [C:W-1(V562_D-1) ] Succ: [T:W-1(V564_D-1) ] T:W-1(V564_D-1) Preds: [G:W-1(V563_D-1) ] Succ: [A:W-1(V565_D-1) ] A:W-1(V565_D-1) Preds: [T:W-1(V564_D-1) ] Succ: [T:W-1(V566_D-1) ] T:W-1(V566_D-1) Preds: [A:W-1(V565_D-1) ] Succ: [C:W-1(V567_D-1) ] C:W-1(V567_D-1) Preds: [T:W-1(V566_D-1) ] Succ: [T:W-1(V568_D-1) ] T:W-1(V568_D-1) Preds: [C:W-1(V567_D-1) ] Succ: [A:W-1(V569_D-1) ] A:W-1(V569_D-1) Preds: [T:W-1(V568_D-1) ] Succ: [G:W-1(V570_D-1) ] G:W-1(V570_D-1) Preds: [A:W-1(V569_D-1) ] Succ: [A:W-1(V571_D-1) ] A:W-1(V571_D-1) Preds: [G:W-1(V570_D-1) ] Succ: [C:W-1(V572_D-1) ] C:W-1(V572_D-1) Preds: [A:W-1(V571_D-1) ] Succ: [C:W-1(V573_D-1) ] C:W-1(V573_D-1) Preds: [C:W-1(V572_D-1) ] Succ: [C:W-1(V574_D-1) ] C:W-1(V574_D-1) Preds: [C:W-1(V573_D-1) ] Succ: [A:W-1(V575_D-1) ] A:W-1(V575_D-1) Preds: [C:W-1(V574_D-1) ] Succ: [G:W-1(V576_D-1) ] G:W-1(V576_D-1) Preds: [A:W-1(V575_D-1) ] Succ: [G:W-1(V577_D-1) ] G:W-1(V577_D-1) Preds: [G:W-1(V576_D-1) ] Succ: [C:W-1(V578_D-1) ] C:W-1(V578_D-1) Preds: [G:W-1(V577_D-1) ] Succ: [C:W-1(V579_D-1) ] C:W-1(V579_D-1) Preds: [C:W-1(V578_D-1) ] Succ: [A:W-1(V580_D-1) ] A:W-1(V580_D-1) Preds: [C:W-1(V579_D-1) ] Succ: [T:W-1(V581_D-1) ] T:W-1(V581_D-1) Preds: [A:W-1(V580_D-1) ] Succ: [C:W-1(V582_D-1) ] C:W-1(V582_D-1) Preds: [T:W-1(V581_D-1) ] Succ: [T:W-1(V583_D-1) ] T:W-1(V583_D-1) Preds: [C:W-1(V582_D-1) ] Succ: [A:W-1(V584_D-1) ] A:W-1(V584_D-1) Preds: [T:W-1(V583_D-1) ] Succ: [A:W-1(V585_D-1) ] A:W-1(V585_D-1) Preds: [A:W-1(V584_D-1) ] Succ: [T:W-1(V586_D-1) ] T:W-1(V586_D-1) Preds: [A:W-1(V585_D-1) ] Succ: [A:W-1(V587_D-1) ] A:W-1(V587_D-1) Preds: [T:W-1(V586_D-1) ] Succ: [A:W-1(V588_D-1) ] A:W-1(V588_D-1) Preds: [A:W-1(V587_D-1) ] Succ: [A:W-1(V589_D-1) ] A:W-1(V589_D-1) Preds: [A:W-1(V588_D-1) ] Succ: [G:W-1(V590_D-1) ] G:W-1(V590_D-1) Preds: [A:W-1(V589_D-1) ] Succ: [G:W-1(V591_D-1) ] G:W-1(V591_D-1) Preds: [G:W-1(V590_D-1) ] Succ: [A:W-1(V592_D-1) ] A:W-1(V592_D-1) Preds: [G:W-1(V591_D-1) ] Succ: [A:W-1(V593_D-1) ] A:W-1(V593_D-1) Preds: [A:W-1(V592_D-1) ] Succ: [A:W-1(V594_D-1) ] A:W-1(V594_D-1) Preds: [A:W-1(V593_D-1) ] Succ: [A:W-1(V595_D-1) ] A:W-1(V595_D-1) Preds: [A:W-1(V594_D-1) ] Succ: [C:W-1(V596_D-1) ] C:W-1(V596_D-1) Preds: [A:W-1(V595_D-1) ] Succ: [T:W-1(V597_D-1) ] T:W-1(V597_D-1) Preds: [C:W-1(V596_D-1) ] Succ: [G:W-1(V598_D-1) ] G:W-1(V598_D-1) Preds: [T:W-1(V597_D-1) ] Succ: [C:W-1(V599_D-1) ] C:W-1(V599_D-1) Preds: [G:W-1(V598_D-1) ] Succ: [A:W-1(V600_D-1) ] A:W-1(V600_D-1) Preds: [C:W-1(V599_D-1) ] Succ: [T:W-1(V601_D-1) ] T:W-1(V601_D-1) Preds: [A:W-1(V600_D-1) ] Succ: [C:W-1(V602_D-1) ] C:W-1(V602_D-1) Preds: [T:W-1(V601_D-1) ] Succ: [T:W-1(V603_D-1) ] T:W-1(V603_D-1) Preds: [C:W-1(V602_D-1) ] Succ: [T:W-1(V604_D-1) ] T:W-1(V604_D-1) Preds: [T:W-1(V603_D-1) ] Succ: [T:W-1(V605_D-1) ] T:W-1(V605_D-1) Preds: [T:W-1(V604_D-1) ] Succ: [G:W-1(V606_D-1) ] G:W-1(V606_D-1) Preds: [T:W-1(V605_D-1) ] Succ: [C:W-1(V607_D-1) ] C:W-1(V607_D-1) Preds: [G:W-1(V606_D-1) ] Succ: [C:W-1(V608_D-1) ] C:W-1(V608_D-1) Preds: [C:W-1(V607_D-1) ] Succ: [C:W-1(V609_D-1) ] C:W-1(V609_D-1) Preds: [C:W-1(V608_D-1) ] Succ: [A:W-1(V610_D-1) ] A:W-1(V610_D-1) Preds: [C:W-1(V609_D-1) ] Succ: [C:W-1(V611_D-1) ] C:W-1(V611_D-1) Preds: [A:W-1(V610_D-1) ] Succ: [A:W-1(V612_D-1) ] A:W-1(V612_D-1) Preds: [C:W-1(V611_D-1) ] Succ: [T:W-1(V613_D-1) ] T:W-1(V613_D-1) Preds: [A:W-1(V612_D-1) ] Succ: [G:W-1(V614_D-1) ] G:W-1(V614_D-1) Preds: [T:W-1(V613_D-1) ] Succ: [A:W-1(V615_D-1) ] A:W-1(V615_D-1) Preds: [G:W-1(V614_D-1) ] Succ: [T:W-1(V616_D-1) ] T:W-1(V616_D-1) Preds: [A:W-1(V615_D-1) ] Succ: [G:W-1(V617_D-1) ] G:W-1(V617_D-1) Preds: [T:W-1(V616_D-1) ] Succ: [C:W-1(V618_D-1) ] C:W-1(V618_D-1) Preds: [G:W-1(V617_D-1) ] Succ: [T:W-1(V619_D-1) ] T:W-1(V619_D-1) Preds: [C:W-1(V618_D-1) ] Succ: [T:W-1(V620_D-1) ] T:W-1(V620_D-1) Preds: [T:W-1(V619_D-1) ] Succ: [G:W-1(V621_D-1) ] G:W-1(V621_D-1) Preds: [T:W-1(V620_D-1) ] Succ: [G:W-1(V622_D-1) ] G:W-1(V622_D-1) Preds: [G:W-1(V621_D-1) ] Succ: [T:W-1(V623_D-1) ] T:W-1(V623_D-1) Preds: [G:W-1(V622_D-1) ] Succ: [T:W-1(V624_D-1) ] T:W-1(V624_D-1) Preds: [T:W-1(V623_D-1) ] Succ: [A:W-1(V625_D-1) ] A:W-1(V625_D-1) Preds: [T:W-1(V624_D-1) ] Succ: [A:W-1(V626_D-1) ] A:W-1(V626_D-1) Preds: [A:W-1(V625_D-1) ] Succ: [G:W-1(V627_D-1) ] G:W-1(V627_D-1) Preds: [A:W-1(V626_D-1) ] Succ: [A:W-1(V628_D-1) ] A:W-1(V628_D-1) Preds: [G:W-1(V627_D-1) ] Succ: [C:W-1(V629_D-1) ] C:W-1(V629_D-1) Preds: [A:W-1(V628_D-1) ] Succ: [A:W-1(V630_D-1) ] A:W-1(V630_D-1) Preds: [C:W-1(V629_D-1) ] Succ: [A:W-1(V631_D-1) ] A:W-1(V631_D-1) Preds: [A:W-1(V630_D-1) ] Succ: [G:W-1(V632_D-1) ] G:W-1(V632_D-1) Preds: [A:W-1(V631_D-1) ] Succ: [G:W-1(V633_D-1) ] G:W-1(V633_D-1) Preds: [G:W-1(V632_D-1) ] Succ: [G:W-1(V634_D-1) ] G:W-1(V634_D-1) Preds: [G:W-1(V633_D-1) ] Succ: [G:W-1(V635_D-1) ] G:W-1(V635_D-1) Preds: [G:W-1(V634_D-1) ] Succ: [T:W-1(V636_D-1) ] T:W-1(V636_D-1) Preds: [G:W-1(V635_D-1) ] Succ: [T:W-1(V637_D-1) ] T:W-1(V637_D-1) Preds: [T:W-1(V636_D-1) ] Succ: [A:W-1(V638_D-1) ] A:W-1(V638_D-1) Preds: [T:W-1(V637_D-1) ] Succ: [G:W-1(V639_D-1) ] G:W-1(V639_D-1) Preds: [A:W-1(V638_D-1) ] Succ: [T:W-1(V640_D-1) ] T:W-1(V640_D-1) Preds: [G:W-1(V639_D-1) ] Succ: [G:W-1(V641_D-1) ] G:W-1(V641_D-1) Preds: [T:W-1(V640_D-1) ] Succ: [A:W-1(V642_D-1) ] A:W-1(V642_D-1) Preds: [G:W-1(V641_D-1) ] Succ: [C:W-1(V643_D-1) ] C:W-1(V643_D-1) Preds: [A:W-1(V642_D-1) ] Succ: [A:W-1(V644_D-1) ] A:W-1(V644_D-1) Preds: [C:W-1(V643_D-1) ] Succ: [A:W-1(V645_D-1) ] A:W-1(V645_D-1) Preds: [A:W-1(V644_D-1) ] Succ: [A:W-1(V646_D-1) ] A:W-1(V646_D-1) Preds: [A:W-1(V645_D-1) ] Succ: [G:W-1(V647_D-1) ] G:W-1(V647_D-1) Preds: [A:W-1(V646_D-1) ] Succ: [T:W-1(V648_D-1) ] T:W-1(V648_D-1) Preds: [G:W-1(V647_D-1) ] Succ: [A:W-1(V649_D-1) ] A:W-1(V649_D-1) Preds: [T:W-1(V648_D-1) ] Succ: [A:W-1(V650_D-1) ] A:W-1(V650_D-1) Preds: [A:W-1(V649_D-1) ] Succ: [A:W-1(V651_D-1) ] A:W-1(V651_D-1) Preds: [A:W-1(V650_D-1) ] Succ: [G:W-1(V652_D-1) ] G:W-1(V652_D-1) Preds: [A:W-1(V651_D-1) ] Succ: [A:W-1(V653_D-1) ] A:W-1(V653_D-1) Preds: [G:W-1(V652_D-1) ] Succ: [G:W-1(V654_D-1) ] G:W-1(V654_D-1) Preds: [A:W-1(V653_D-1) ] Succ: [G:W-1(V655_D-1) ] G:W-1(V655_D-1) Preds: [G:W-1(V654_D-1) ] Succ: [A:W-1(V656_D-1) ] A:W-1(V656_D-1) Preds: [G:W-1(V655_D-1) ] Succ: [T:W-1(V657_D-1) ] T:W-1(V657_D-1) Preds: [A:W-1(V656_D-1) ] Succ: [G:W-1(V658_D-1) ] G:W-1(V658_D-1) Preds: [T:W-1(V657_D-1) ] Succ: [A:W-1(V659_D-1) ] A:W-1(V659_D-1) Preds: [G:W-1(V658_D-1) ] Succ: [C:W-1(V660_D-1) ] C:W-1(V660_D-1) Preds: [A:W-1(V659_D-1) ] Succ: [A:W-1(V661_D-1) ] A:W-1(V661_D-1) Preds: [C:W-1(V660_D-1) ] Succ: [G:W-1(V662_D-1) ] G:W-1(V662_D-1) Preds: [A:W-1(V661_D-1) ] Succ: [A:W-1(V663_D-1) ] A:W-1(V663_D-1) Preds: [G:W-1(V662_D-1) ] Succ: [C:W-1(V664_D-1) ] C:W-1(V664_D-1) Preds: [A:W-1(V663_D-1) ] Succ: [T:W-1(V665_D-1) ] T:W-1(V665_D-1) Preds: [C:W-1(V664_D-1) ] Succ: [C:W-1(V666_D-1) ] C:W-1(V666_D-1) Preds: [T:W-1(V665_D-1) ] Succ: [T:W-1(V667_D-1) ] T:W-1(V667_D-1) Preds: [C:W-1(V666_D-1) ] Succ: [C:W-1(V668_D-1) ] C:W-1(V668_D-1) Preds: [T:W-1(V667_D-1) ] Succ: [T:W-1(V669_D-1) ] T:W-1(V669_D-1) Preds: [C:W-1(V668_D-1) ] Succ: [A:W-1(V670_D-1) ] A:W-1(V670_D-1) Preds: [T:W-1(V669_D-1) ] Succ: [A:W-1(V671_D-1) ] A:W-1(V671_D-1) Preds: [A:W-1(V670_D-1) ] Succ: [G:W-1(V672_D-1) ] G:W-1(V672_D-1) Preds: [A:W-1(V671_D-1) ] Succ: [G:W-1(V673_D-1) ] G:W-1(V673_D-1) Preds: [G:W-1(V672_D-1) ] Succ: [G:W-1(V674_D-1) ] G:W-1(V674_D-1) Preds: [G:W-1(V673_D-1) ] Succ: [A:W-1(V675_D-1) ] A:W-1(V675_D-1) Preds: [G:W-1(V674_D-1) ] Succ: [C:W-1(V676_D-1) ] C:W-1(V676_D-1) Preds: [A:W-1(V675_D-1) ] Succ: [A:W-1(V677_D-1) ] A:W-1(V677_D-1) Preds: [C:W-1(V676_D-1) ] Succ: [T:W-1(V678_D-1) ] T:W-1(V678_D-1) Preds: [A:W-1(V677_D-1) ] Succ: [A:W-1(V679_D-1) ] A:W-1(V679_D-1) Preds: [T:W-1(V678_D-1) ] Succ: [T:W-1(V680_D-1) ] T:W-1(V680_D-1) Preds: [A:W-1(V679_D-1) ] Succ: [G:W-1(V681_D-1) ] G:W-1(V681_D-1) Preds: [T:W-1(V680_D-1) ] Succ: [G:W-1(V682_D-1) ] G:W-1(V682_D-1) Preds: [G:W-1(V681_D-1) ] Succ: [G:W-1(V683_D-1) ] G:W-1(V683_D-1) Preds: [G:W-1(V682_D-1) ] Succ: [A:W-1(V684_D-1) ] A:W-1(V684_D-1) Preds: [G:W-1(V683_D-1) ] Succ: [G:W-1(V685_D-1) ] G:W-1(V685_D-1) Preds: [A:W-1(V684_D-1) ] Succ: [C:W-1(V686_D-1) ] C:W-1(V686_D-1) Preds: [G:W-1(V685_D-1) ] Succ: [T:W-1(V687_D-1) ] T:W-1(V687_D-1) Preds: [C:W-1(V686_D-1) ] Succ: [A:W-1(V688_D-1) ] A:W-1(V688_D-1) Preds: [T:W-1(V687_D-1) ] Succ: [C:W-1(V689_D-1) ] C:W-1(V689_D-1) Preds: [A:W-1(V688_D-1) ] Succ: [A:W-1(V690_D-1) ] A:W-1(V690_D-1) Preds: [C:W-1(V689_D-1) ] Succ: [T:W-1(V691_D-1) ] T:W-1(V691_D-1) Preds: [A:W-1(V690_D-1) ] Succ: [A:W-1(V692_D-1) ] A:W-1(V692_D-1) Preds: [T:W-1(V691_D-1) ] Succ: [G:W-1(V693_D-1) ] G:W-1(V693_D-1) Preds: [A:W-1(V692_D-1) ] Succ: [C:W-1(V694_D-1) ] C:W-1(V694_D-1) Preds: [G:W-1(V693_D-1) ] Succ: [C:W-1(V695_D-1) ] C:W-1(V695_D-1) Preds: [C:W-1(V694_D-1) ] Succ: [A:W-1(V696_D-1) ] A:W-1(V696_D-1) Preds: [C:W-1(V695_D-1) ] Succ: [G:W-1(V697_D-1) ] G:W-1(V697_D-1) Preds: [A:W-1(V696_D-1) ] Succ: [C:W-1(V698_D-1) ] C:W-1(V698_D-1) Preds: [G:W-1(V697_D-1) ] Succ: [C:W-1(V699_D-1) ] C:W-1(V699_D-1) Preds: [C:W-1(V698_D-1) ] Succ: [C:W-1(V700_D-1) ] C:W-1(V700_D-1) Preds: [C:W-1(V699_D-1) ] Succ: [C:W-1(V701_D-1) ] C:W-1(V701_D-1) Preds: [C:W-1(V700_D-1) ] Succ: [G:W-1(V702_D-1) ] G:W-1(V702_D-1) Preds: [C:W-1(V701_D-1) ] Succ: [T:W-1(V703_D-1) ] T:W-1(V703_D-1) Preds: [G:W-1(V702_D-1) ] Succ: [G:W-1(V704_D-1) ] G:W-1(V704_D-1) Preds: [T:W-1(V703_D-1) ] Succ: [G:W-1(V705_D-1) ] G:W-1(V705_D-1) Preds: [G:W-1(V704_D-1) ] Succ: [A:W-1(V706_D-1) ] A:W-1(V706_D-1) Preds: [G:W-1(V705_D-1) ] Succ: [G:W-1(V707_D-1) ] G:W-1(V707_D-1) Preds: [A:W-1(V706_D-1) ] Succ: [G:W-1(V708_D-1) ] G:W-1(V708_D-1) Preds: [G:W-1(V707_D-1) ] Succ: [G:W-1(V709_D-1) ] G:W-1(V709_D-1) Preds: [G:W-1(V708_D-1) ] Succ: [A:W-1(V710_D-1) ] A:W-1(V710_D-1) Preds: [G:W-1(V709_D-1) ] Succ: [G:W-1(V711_D-1) ] G:W-1(V711_D-1) Preds: [A:W-1(V710_D-1) ] Succ: [C:W-1(V712_D-1) ] C:W-1(V712_D-1) Preds: [G:W-1(V711_D-1) ] Succ: [C:W-1(V713_D-1) ] C:W-1(V713_D-1) Preds: [C:W-1(V712_D-1) ] Succ: [A:W-1(V714_D-1) ] A:W-1(V714_D-1) Preds: [C:W-1(V713_D-1) ] Succ: [C:W-1(V715_D-1) ] C:W-1(V715_D-1) Preds: [A:W-1(V714_D-1) ] Succ: [C:W-1(V716_D-1) ] C:W-1(V716_D-1) Preds: [C:W-1(V715_D-1) ] Succ: [A:W-1(V717_D-1) ] A:W-1(V717_D-1) Preds: [C:W-1(V716_D-1) C:W-1(V812_D-1) ] Succ: [G:W-1(V718_D-1) ] G:W-1(V718_D-1) Preds: [A:W-1(V717_D-1) ] Succ: [C:W-1(V719_D-1) ] C:W-1(V719_D-1) Preds: [G:W-1(V718_D-1) ] Succ: [C:W-1(V720_D-1) ] C:W-1(V720_D-1) Preds: [C:W-1(V719_D-1) ] Succ: [A:W-1(V721_D-1) ] A:W-1(V721_D-1) Preds: [C:W-1(V720_D-1) ] Succ: [C:W-1(V722_D-1) ] C:W-1(V722_D-1) Preds: [A:W-1(V721_D-1) ] Succ: [A:W-1(V723_D-1) ] A:W-1(V723_D-1) Preds: [C:W-1(V722_D-1) ] Succ: [G:W-1(V724_D-1) ] G:W-1(V724_D-1) Preds: [A:W-1(V723_D-1) ] Succ: [G:W-1(V725_D-1) ] G:W-1(V725_D-1) Preds: [G:W-1(V724_D-1) ] Succ: [T:W-1(V726_D-1) ] T:W-1(V726_D-1) Preds: [G:W-1(V725_D-1) ] Succ: [A:W-1(V727_D-1) ] A:W-1(V727_D-1) Preds: [T:W-1(V726_D-1) ] Succ: [C:W-1(V728_D-1) ] C:W-1(V728_D-1) Preds: [A:W-1(V727_D-1) ] Succ: [C:W-1(V729_D-1) ] C:W-1(V729_D-1) Preds: [C:W-1(V728_D-1) ] Succ: [T:W-1(V730_D-1) ] T:W-1(V730_D-1) Preds: [C:W-1(V729_D-1) ] Succ: [G:W-1(V731_D-1) ] G:W-1(V731_D-1) Preds: [T:W-1(V730_D-1) ] Succ: [A:W-1(V732_D-1) ] A:W-1(V732_D-1) Preds: [G:W-1(V731_D-1) ] Succ: [T:W-1(V733_D-1) ] T:W-1(V733_D-1) Preds: [A:W-1(V732_D-1) ] Succ: [G:W-1(V734_D-1) ] G:W-1(V734_D-1) Preds: [T:W-1(V733_D-1) ] Succ: [G:W-1(V735_D-1) ] G:W-1(V735_D-1) Preds: [G:W-1(V734_D-1) ] Succ: [A:W-1(V736_D-1) ] A:W-1(V736_D-1) Preds: [G:W-1(V735_D-1) ] Succ: [A:W-1(V737_D-1) ] A:W-1(V737_D-1) Preds: [A:W-1(V736_D-1) ] Succ: [A:W-1(V738_D-1) ] A:W-1(V738_D-1) Preds: [A:W-1(V737_D-1) ] Succ: [T:W-1(V739_D-1) ] T:W-1(V739_D-1) Preds: [A:W-1(V738_D-1) ] Succ: [G:W-1(V740_D-1) ] G:W-1(V740_D-1) Preds: [T:W-1(V739_D-1) ] Succ: [C:W-1(V741_D-1) ] C:W-1(V741_D-1) Preds: [G:W-1(V740_D-1) ] Succ: [C:W-1(V742_D-1) ] C:W-1(V742_D-1) Preds: [C:W-1(V741_D-1) ] Succ: [G:W-1(V743_D-1) ] G:W-1(V743_D-1) Preds: [C:W-1(V742_D-1) ] Succ: [G:W-1(V744_D-1) ] G:W-1(V744_D-1) Preds: [G:W-1(V743_D-1) ] Succ: [C:W-1(V745_D-1) ] C:W-1(V745_D-1) Preds: [G:W-1(V744_D-1) ] Succ: [T:W-1(V746_D-1) ] T:W-1(V746_D-1) Preds: [C:W-1(V745_D-1) ] Succ: [C:W-1(V747_D-1) ] C:W-1(V747_D-1) Preds: [T:W-1(V746_D-1) ] Succ: [A:W-1(V748_D-1) ] A:W-1(V748_D-1) Preds: [C:W-1(V747_D-1) ] Succ: [C:W-1(V749_D-1) ] C:W-1(V749_D-1) Preds: [A:W-1(V748_D-1) ] Succ: [T:W-1(V750_D-1) ] T:W-1(V750_D-1) Preds: [C:W-1(V749_D-1) ] Succ: [T:W-1(V751_D-1) ] T:W-1(V751_D-1) Preds: [T:W-1(V750_D-1) ] Succ: [C:W-1(V752_D-1) ] C:W-1(V752_D-1) Preds: [T:W-1(V751_D-1) ] Succ: [C:W-1(V753_D-1) ] C:W-1(V753_D-1) Preds: [C:W-1(V752_D-1) ] Succ: [T:W-1(V754_D-1) ] T:W-1(V754_D-1) Preds: [C:W-1(V753_D-1) ] Succ: [G:W-1(V755_D-1) ] G:W-1(V755_D-1) Preds: [T:W-1(V754_D-1) ] Succ: [T:W-1(V756_D-1) ] T:W-1(V756_D-1) Preds: [G:W-1(V755_D-1) ] Succ: [G:W-1(V757_D-1) ] G:W-1(V757_D-1) Preds: [T:W-1(V756_D-1) ] Succ: [A:W-1(V758_D-1) ] A:W-1(V758_D-1) Preds: [G:W-1(V757_D-1) ] Succ: [] GCTAGGGGAAATAGGGGAGCTCCA:W0(V786_D-1) Preds: [] Succ: [A:W-1(V787_D-1) ] A:W-1(V787_D-1) Preds: [GCTAGGGGAAATAGGGGAGCTCCA:W0(V786_D-1) ] Succ: [A:W-1(V788_D-1) ] A:W-1(V788_D-1) Preds: [A:W-1(V787_D-1) ] Succ: [C:W-1(V789_D-1) ] C:W-1(V789_D-1) Preds: [A:W-1(V788_D-1) ] Succ: [C:W-1(V790_D-1) ] C:W-1(V790_D-1) Preds: [C:W-1(V789_D-1) ] Succ: [C:W-1(V791_D-1) ] C:W-1(V791_D-1) Preds: [C:W-1(V790_D-1) ] Succ: [A:W-1(V792_D-1) ] A:W-1(V792_D-1) Preds: [C:W-1(V791_D-1) ] Succ: [G:W-1(V793_D-1) ] G:W-1(V793_D-1) Preds: [A:W-1(V792_D-1) ] Succ: [C:W-1(V794_D-1) ] C:W-1(V794_D-1) Preds: [G:W-1(V793_D-1) ] Succ: [C:W-1(V795_D-1) ] C:W-1(V795_D-1) Preds: [C:W-1(V794_D-1) ] Succ: [C:W-1(V796_D-1) ] C:W-1(V796_D-1) Preds: [C:W-1(V795_D-1) ] Succ: [C:W-1(V797_D-1) ] C:W-1(V797_D-1) Preds: [C:W-1(V796_D-1) ] Succ: [G:W-1(V798_D-1) ] G:W-1(V798_D-1) Preds: [C:W-1(V797_D-1) ] Succ: [T:W-1(V799_D-1) ] T:W-1(V799_D-1) Preds: [G:W-1(V798_D-1) ] Succ: [G:W-1(V800_D-1) ] G:W-1(V800_D-1) Preds: [T:W-1(V799_D-1) ] Succ: [G:W-1(V801_D-1) ] G:W-1(V801_D-1) Preds: [G:W-1(V800_D-1) ] Succ: [A:W-1(V802_D-1) ] A:W-1(V802_D-1) Preds: [G:W-1(V801_D-1) ] Succ: [G:W-1(V803_D-1) ] G:W-1(V803_D-1) Preds: [A:W-1(V802_D-1) ] Succ: [G:W-1(V804_D-1) ] G:W-1(V804_D-1) Preds: [G:W-1(V803_D-1) ] Succ: [G:W-1(V805_D-1) ] G:W-1(V805_D-1) Preds: [G:W-1(V804_D-1) ] Succ: [A:W-1(V806_D-1) ] A:W-1(V806_D-1) Preds: [G:W-1(V805_D-1) ] Succ: [G:W-1(V807_D-1) ] G:W-1(V807_D-1) Preds: [A:W-1(V806_D-1) ] Succ: [C:W-1(V808_D-1) ] C:W-1(V808_D-1) Preds: [G:W-1(V807_D-1) ] Succ: [C:W-1(V809_D-1) ] C:W-1(V809_D-1) Preds: [C:W-1(V808_D-1) ] Succ: [A:W-1(V810_D-1) ] A:W-1(V810_D-1) Preds: [C:W-1(V809_D-1) ] Succ: [C:W-1(V811_D-1) ] C:W-1(V811_D-1) Preds: [A:W-1(V810_D-1) ] Succ: [C:W-1(V812_D-1) ] C:W-1(V812_D-1) Preds: [C:W-1(V811_D-1) ] Succ: [A:W-1(V717_D-1) ] C:W-1(V813_D-1) Preds: [T:W-1(V524_D-1) ] Succ: [A:W-1(V814_D-1) ] A:W-1(V814_D-1) Preds: [C:W-1(V813_D-1) ] Succ: [G:W-1(V815_D-1) ] G:W-1(V815_D-1) Preds: [A:W-1(V814_D-1) ] Succ: [C:W-1(V816_D-1) ] C:W-1(V816_D-1) Preds: [G:W-1(V815_D-1) ] Succ: [A:W-1(V817_D-1) ] A:W-1(V817_D-1) Preds: [C:W-1(V816_D-1) ] Succ: [C:W-1(V818_D-1) ] C:W-1(V818_D-1) Preds: [A:W-1(V817_D-1) ] Succ: [T:W-1(V819_D-1) ] T:W-1(V819_D-1) Preds: [C:W-1(V818_D-1) ] Succ: [C:W-1(V820_D-1) ] C:W-1(V820_D-1) Preds: [T:W-1(V819_D-1) ] Succ: [T:W-1(V821_D-1) ] T:W-1(V821_D-1) Preds: [C:W-1(V820_D-1) ] Succ: [G:W-1(V822_D-1) ] G:W-1(V822_D-1) Preds: [T:W-1(V821_D-1) ] Succ: [A:W-1(V823_D-1) ] A:W-1(V823_D-1) Preds: [G:W-1(V822_D-1) ] Succ: [A:W-1(V824_D-1) ] A:W-1(V824_D-1) Preds: [A:W-1(V823_D-1) ] Succ: [C:W-1(V825_D-1) ] C:W-1(V825_D-1) Preds: [A:W-1(V824_D-1) ] Succ: [C:W-1(V826_D-1) ] C:W-1(V826_D-1) Preds: [C:W-1(V825_D-1) ] Succ: [C:W-1(V827_D-1) ] C:W-1(V827_D-1) Preds: [C:W-1(V826_D-1) ] Succ: [T:W-1(V828_D-1) ] T:W-1(V828_D-1) Preds: [C:W-1(V827_D-1) ] Succ: [G:W-1(V829_D-1) ] G:W-1(V829_D-1) Preds: [T:W-1(V828_D-1) ] Succ: [T:W-1(V830_D-1) ] T:W-1(V830_D-1) Preds: [G:W-1(V829_D-1) ] Succ: [G:W-1(V831_D-1) ] G:W-1(V831_D-1) Preds: [T:W-1(V830_D-1) ] Succ: [A:W-1(V832_D-1) ] A:W-1(V832_D-1) Preds: [G:W-1(V831_D-1) ] Succ: [G:W-1(V833_D-1) ] G:W-1(V833_D-1) Preds: [A:W-1(V832_D-1) ] Succ: [G:W-1(V834_D-1) ] G:W-1(V834_D-1) Preds: [G:W-1(V833_D-1) ] Succ: [C:W-1(V835_D-1) ] C:W-1(V835_D-1) Preds: [G:W-1(V834_D-1) ] Succ: [A:W-1(V836_D-1) ] A:W-1(V836_D-1) Preds: [C:W-1(V835_D-1) ] Succ: [A:W-1(V549_D-1) ] G:W-1(V885_D-1) Preds: [G:W-1(V415_D-1) ] Succ: [C:W-1(V886_D-1) ] C:W-1(V886_D-1) Preds: [G:W-1(V885_D-1) ] Succ: [T:W-1(V887_D-1) ] T:W-1(V887_D-1) Preds: [C:W-1(V886_D-1) ] Succ: [C:W-1(V888_D-1) ] C:W-1(V888_D-1) Preds: [T:W-1(V887_D-1) ] Succ: [A:W-1(V889_D-1) ] A:W-1(V889_D-1) Preds: [C:W-1(V888_D-1) ] Succ: [T:W-1(V890_D-1) ] T:W-1(V890_D-1) Preds: [A:W-1(V889_D-1) ] Succ: [C:W-1(V891_D-1) ] C:W-1(V891_D-1) Preds: [T:W-1(V890_D-1) ] Succ: [A:W-1(V892_D-1) ] A:W-1(V892_D-1) Preds: [C:W-1(V891_D-1) ] Succ: [G:W-1(V893_D-1) ] G:W-1(V893_D-1) Preds: [A:W-1(V892_D-1) ] Succ: [C:W-1(V894_D-1) ] C:W-1(V894_D-1) Preds: [G:W-1(V893_D-1) ] Succ: [A:W-1(V895_D-1) ] A:W-1(V895_D-1) Preds: [C:W-1(V894_D-1) ] Succ: [A:W-1(V896_D-1) ] A:W-1(V896_D-1) Preds: [A:W-1(V895_D-1) ] Succ: [G:W-1(V897_D-1) ] G:W-1(V897_D-1) Preds: [A:W-1(V896_D-1) ] Succ: [A:W-1(V898_D-1) ] A:W-1(V898_D-1) Preds: [G:W-1(V897_D-1) ] Succ: [A:W-1(V899_D-1) ] A:W-1(V899_D-1) Preds: [A:W-1(V898_D-1) ] Succ: [G:W-1(V900_D-1) ] G:W-1(V900_D-1) Preds: [A:W-1(V899_D-1) ] Succ: [A:W-1(V901_D-1) ] A:W-1(V901_D-1) Preds: [G:W-1(V900_D-1) ] Succ: [A:W-1(V902_D-1) ] A:W-1(V902_D-1) Preds: [A:W-1(V901_D-1) ] Succ: [A:W-1(V903_D-1) ] A:W-1(V903_D-1) Preds: [A:W-1(V902_D-1) ] Succ: [T:W-1(V904_D-1) ] T:W-1(V904_D-1) Preds: [A:W-1(V903_D-1) ] Succ: [C:W-1(V905_D-1) ] C:W-1(V905_D-1) Preds: [T:W-1(V904_D-1) ] Succ: [T:W-1(V906_D-1) ] T:W-1(V906_D-1) Preds: [C:W-1(V905_D-1) ] Succ: [T:W-1(V907_D-1) ] T:W-1(V907_D-1) Preds: [T:W-1(V906_D-1) ] Succ: [T:W-1(V908_D-1) ] T:W-1(V908_D-1) Preds: [T:W-1(V907_D-1) ] Succ: [C:W-1(V440_D-1) ] AGAATACAAAATGCCTTCCTCCAG:W0(V945_D-1) Preds: [] Succ: [C:W-1(V946_D-1) ] C:W-1(V946_D-1) Preds: [AGAATACAAAATGCCTTCCTCCAG:W0(V945_D-1) ] Succ: [C:W-1(V947_D-1) ] C:W-1(V947_D-1) Preds: [C:W-1(V946_D-1) ] Succ: [T:W-1(V948_D-1) ] T:W-1(V948_D-1) Preds: [C:W-1(V947_D-1) ] Succ: [C:W-1(V949_D-1) ] C:W-1(V949_D-1) Preds: [T:W-1(V948_D-1) ] Succ: [A:W-1(V950_D-1) ] A:W-1(V950_D-1) Preds: [C:W-1(V949_D-1) ] Succ: [T:W-1(V951_D-1) ] T:W-1(V951_D-1) Preds: [A:W-1(V950_D-1) ] Succ: [C:W-1(V952_D-1) ] C:W-1(V952_D-1) Preds: [T:W-1(V951_D-1) ] Succ: [A:W-1(V953_D-1) ] A:W-1(V953_D-1) Preds: [C:W-1(V952_D-1) ] Succ: [G:W-1(V954_D-1) ] G:W-1(V954_D-1) Preds: [A:W-1(V953_D-1) ] Succ: [C:W-1(V955_D-1) ] C:W-1(V955_D-1) Preds: [G:W-1(V954_D-1) ] Succ: [A:W-1(V956_D-1) ] A:W-1(V956_D-1) Preds: [C:W-1(V955_D-1) ] Succ: [G:W-1(V957_D-1) ] G:W-1(V957_D-1) Preds: [A:W-1(V956_D-1) ] Succ: [G:W-1(V958_D-1) ] G:W-1(V958_D-1) Preds: [G:W-1(V957_D-1) ] Succ: [A:W-1(V959_D-1) ] A:W-1(V959_D-1) Preds: [G:W-1(V958_D-1) ] Succ: [A:W-1(V960_D-1) ] A:W-1(V960_D-1) Preds: [A:W-1(V959_D-1) ] Succ: [G:W-1(V961_D-1) ] G:W-1(V961_D-1) Preds: [A:W-1(V960_D-1) ] Succ: [A:W-1(V962_D-1) ] A:W-1(V962_D-1) Preds: [G:W-1(V961_D-1) ] Succ: [A:W-1(V963_D-1) ] A:W-1(V963_D-1) Preds: [A:W-1(V962_D-1) ] Succ: [A:W-1(V964_D-1) ] A:W-1(V964_D-1) Preds: [A:W-1(V963_D-1) ] Succ: [T:W-1(V965_D-1) ] T:W-1(V965_D-1) Preds: [A:W-1(V964_D-1) ] Succ: [C:W-1(V966_D-1) ] C:W-1(V966_D-1) Preds: [T:W-1(V965_D-1) ] Succ: [T:W-1(V967_D-1) ] T:W-1(V967_D-1) Preds: [C:W-1(V966_D-1) ] Succ: [T:W-1(V968_D-1) ] T:W-1(V968_D-1) Preds: [T:W-1(V967_D-1) ] Succ: [T:W-1(V969_D-1) ] T:W-1(V969_D-1) Preds: [T:W-1(V968_D-1) ] Succ: [C:W-1(V970_D-1) ] C:W-1(V970_D-1) Preds: [T:W-1(V969_D-1) ] Succ: [T:W-1(V971_D-1) ] T:W-1(V971_D-1) Preds: [C:W-1(V970_D-1) ] Succ: [T:W-1(V972_D-1) ] T:W-1(V972_D-1) Preds: [T:W-1(V971_D-1) ] Succ: [T:W-1(V973_D-1) ] T:W-1(V973_D-1) Preds: [T:W-1(V972_D-1) ] Succ: [C:W-1(V974_D-1) ] C:W-1(V974_D-1) Preds: [T:W-1(V973_D-1) ] Succ: [C:W-1(V975_D-1) ] C:W-1(V975_D-1) Preds: [C:W-1(V974_D-1) ] Succ: [A:W-1(V976_D-1) ] A:W-1(V976_D-1) Preds: [C:W-1(V975_D-1) ] Succ: [A:W-1(V977_D-1) ] A:W-1(V977_D-1) Preds: [A:W-1(V976_D-1) ] Succ: [G:W-1(V978_D-1) ] G:W-1(V978_D-1) Preds: [A:W-1(V977_D-1) ] Succ: [T:W-1(V979_D-1) ] T:W-1(V979_D-1) Preds: [G:W-1(V978_D-1) ] Succ: [A:W-1(V980_D-1) ] A:W-1(V980_D-1) Preds: [T:W-1(V979_D-1) ] Succ: [G:W-1(V451_D-1) ] compactLinearPaths() SECTION ================= COMPACTING THE GRAPH ================= Found potential edge: Edge(380->381,w:2.0) between GGCCACACGATGGCTTATCACGTC:W0(V380_D-1) and C:W-1(V381_D-1) removing vertex C:W-1(V381_D-1) was concatenated into GGCCACACGATGGCTTATCACGTCC:W0(V380_D-1) Want to move edge Edge(381->382,w:2.0)(C:W-1(V381_D-1)->A:W-1(V382_D-1)) to (GGCCACACGATGGCTTATCACGTCC:W0(V380_D-1)->A:W-1(V382_D-1) adding edge: GGCCACACGATGGCTTATCACGTCC:W0(V380_D-1) to A:W-1(V382_D-1) removing edge Edge(381->382,w:2.0)(C:W-1(V381_D-1)->A:W-1(V382_D-1)) removing edge Edge(380->381,w:2.0)(GGCCACACGATGGCTTATCACGTCC:W0(V380_D-1)->C:W-1(V381_D-1)) Found potential edge: Edge(380->382,w:2.0) between GGCCACACGATGGCTTATCACGTCC:W0(V380_D-1) and A:W-1(V382_D-1) removing vertex A:W-1(V382_D-1) was concatenated into GGCCACACGATGGCTTATCACGTCCA:W0(V380_D-1) Want to move edge Edge(382->383,w:2.0)(A:W-1(V382_D-1)->C:W-1(V383_D-1)) to (GGCCACACGATGGCTTATCACGTCCA:W0(V380_D-1)->C:W-1(V383_D-1) adding edge: GGCCACACGATGGCTTATCACGTCCA:W0(V380_D-1) to C:W-1(V383_D-1) removing edge Edge(382->383,w:2.0)(A:W-1(V382_D-1)->C:W-1(V383_D-1)) removing edge Edge(380->382,w:2.0)(GGCCACACGATGGCTTATCACGTCCA:W0(V380_D-1)->A:W-1(V382_D-1)) Found potential edge: Edge(380->383,w:2.0) between GGCCACACGATGGCTTATCACGTCCA:W0(V380_D-1) and C:W-1(V383_D-1) removing vertex C:W-1(V383_D-1) was concatenated into GGCCACACGATGGCTTATCACGTCCAC:W0(V380_D-1) Want to move edge Edge(383->384,w:2.0)(C:W-1(V383_D-1)->A:W-1(V384_D-1)) to (GGCCACACGATGGCTTATCACGTCCAC:W0(V380_D-1)->A:W-1(V384_D-1) adding edge: GGCCACACGATGGCTTATCACGTCCAC:W0(V380_D-1) to A:W-1(V384_D-1) removing edge Edge(383->384,w:2.0)(C:W-1(V383_D-1)->A:W-1(V384_D-1)) removing edge Edge(380->383,w:2.0)(GGCCACACGATGGCTTATCACGTCCAC:W0(V380_D-1)->C:W-1(V383_D-1)) Found potential edge: Edge(380->384,w:2.0) between GGCCACACGATGGCTTATCACGTCCAC:W0(V380_D-1) and A:W-1(V384_D-1) removing vertex A:W-1(V384_D-1) was concatenated into GGCCACACGATGGCTTATCACGTCCACA:W0(V380_D-1) Want to move edge Edge(384->385,w:2.0)(A:W-1(V384_D-1)->T:W-1(V385_D-1)) to (GGCCACACGATGGCTTATCACGTCCACA:W0(V380_D-1)->T:W-1(V385_D-1) adding edge: GGCCACACGATGGCTTATCACGTCCACA:W0(V380_D-1) to T:W-1(V385_D-1) removing edge Edge(384->385,w:2.0)(A:W-1(V384_D-1)->T:W-1(V385_D-1)) removing edge Edge(380->384,w:2.0)(GGCCACACGATGGCTTATCACGTCCACA:W0(V380_D-1)->A:W-1(V384_D-1)) Found potential edge: Edge(380->385,w:2.0) between GGCCACACGATGGCTTATCACGTCCACA:W0(V380_D-1) and T:W-1(V385_D-1) removing vertex T:W-1(V385_D-1) was concatenated into GGCCACACGATGGCTTATCACGTCCACAT:W0(V380_D-1) Want to move edge Edge(385->386,w:2.0)(T:W-1(V385_D-1)->T:W-1(V386_D-1)) to (GGCCACACGATGGCTTATCACGTCCACAT:W0(V380_D-1)->T:W-1(V386_D-1) adding edge: GGCCACACGATGGCTTATCACGTCCACAT:W0(V380_D-1) to T:W-1(V386_D-1) removing edge Edge(385->386,w:2.0)(T:W-1(V385_D-1)->T:W-1(V386_D-1)) removing edge Edge(380->385,w:2.0)(GGCCACACGATGGCTTATCACGTCCACAT:W0(V380_D-1)->T:W-1(V385_D-1)) Found potential edge: Edge(380->386,w:2.0) between GGCCACACGATGGCTTATCACGTCCACAT:W0(V380_D-1) and T:W-1(V386_D-1) removing vertex T:W-1(V386_D-1) was concatenated into GGCCACACGATGGCTTATCACGTCCACATT:W0(V380_D-1) Want to move edge Edge(386->387,w:2.0)(T:W-1(V386_D-1)->T:W-1(V387_D-1)) to (GGCCACACGATGGCTTATCACGTCCACATT:W0(V380_D-1)->T:W-1(V387_D-1) adding edge: GGCCACACGATGGCTTATCACGTCCACATT:W0(V380_D-1) to T:W-1(V387_D-1) removing edge Edge(386->387,w:2.0)(T:W-1(V386_D-1)->T:W-1(V387_D-1)) removing edge Edge(380->386,w:2.0)(GGCCACACGATGGCTTATCACGTCCACATT:W0(V380_D-1)->T:W-1(V386_D-1)) Found potential edge: Edge(380->387,w:2.0) between GGCCACACGATGGCTTATCACGTCCACATT:W0(V380_D-1) and T:W-1(V387_D-1) removing vertex T:W-1(V387_D-1) was concatenated into GGCCACACGA...GTCCACATTT:W0(V380_D-1) Want to move edge Edge(387->388,w:2.0)(T:W-1(V387_D-1)->C:W-1(V388_D-1)) to (GGCCACACGA...GTCCACATTT:W0(V380_D-1)->C:W-1(V388_D-1) adding edge: GGCCACACGA...GTCCACATTT:W0(V380_D-1) to C:W-1(V388_D-1) removing edge Edge(387->388,w:2.0)(T:W-1(V387_D-1)->C:W-1(V388_D-1)) removing edge Edge(380->387,w:2.0)(GGCCACACGA...GTCCACATTT:W0(V380_D-1)->T:W-1(V387_D-1)) Found potential edge: Edge(380->388,w:2.0) between GGCCACACGA...GTCCACATTT:W0(V380_D-1) and C:W-1(V388_D-1) removing vertex C:W-1(V388_D-1) was concatenated into GGCCACACGA...TCCACATTTC:W1(V380_D-1) Want to move edge Edge(388->389,w:2.0)(C:W-1(V388_D-1)->T:W-1(V389_D-1)) to (GGCCACACGA...TCCACATTTC:W1(V380_D-1)->T:W-1(V389_D-1) adding edge: GGCCACACGA...TCCACATTTC:W1(V380_D-1) to T:W-1(V389_D-1) removing edge Edge(388->389,w:2.0)(C:W-1(V388_D-1)->T:W-1(V389_D-1)) removing edge Edge(380->388,w:2.0)(GGCCACACGA...TCCACATTTC:W1(V380_D-1)->C:W-1(V388_D-1)) Found potential edge: Edge(380->389,w:2.0) between GGCCACACGA...TCCACATTTC:W1(V380_D-1) and T:W-1(V389_D-1) removing vertex T:W-1(V389_D-1) was concatenated into GGCCACACGA...CCACATTTCT:W1(V380_D-1) Want to move edge Edge(389->390,w:2.0)(T:W-1(V389_D-1)->A:W-1(V390_D-1)) to (GGCCACACGA...CCACATTTCT:W1(V380_D-1)->A:W-1(V390_D-1) adding edge: GGCCACACGA...CCACATTTCT:W1(V380_D-1) to A:W-1(V390_D-1) removing edge Edge(389->390,w:2.0)(T:W-1(V389_D-1)->A:W-1(V390_D-1)) removing edge Edge(380->389,w:2.0)(GGCCACACGA...CCACATTTCT:W1(V380_D-1)->T:W-1(V389_D-1)) Found potential edge: Edge(380->390,w:2.0) between GGCCACACGA...CCACATTTCT:W1(V380_D-1) and A:W-1(V390_D-1) removing vertex A:W-1(V390_D-1) was concatenated into GGCCACACGA...CACATTTCTA:W1(V380_D-1) Want to move edge Edge(390->391,w:2.0)(A:W-1(V390_D-1)->C:W-1(V391_D-1)) to (GGCCACACGA...CACATTTCTA:W1(V380_D-1)->C:W-1(V391_D-1) adding edge: GGCCACACGA...CACATTTCTA:W1(V380_D-1) to C:W-1(V391_D-1) removing edge Edge(390->391,w:2.0)(A:W-1(V390_D-1)->C:W-1(V391_D-1)) removing edge Edge(380->390,w:2.0)(GGCCACACGA...CACATTTCTA:W1(V380_D-1)->A:W-1(V390_D-1)) Found potential edge: Edge(380->391,w:2.0) between GGCCACACGA...CACATTTCTA:W1(V380_D-1) and C:W-1(V391_D-1) removing vertex C:W-1(V391_D-1) was concatenated into GGCCACACGA...ACATTTCTAC:W1(V380_D-1) Want to move edge Edge(391->392,w:2.0)(C:W-1(V391_D-1)->T:W-1(V392_D-1)) to (GGCCACACGA...ACATTTCTAC:W1(V380_D-1)->T:W-1(V392_D-1) adding edge: GGCCACACGA...ACATTTCTAC:W1(V380_D-1) to T:W-1(V392_D-1) removing edge Edge(391->392,w:2.0)(C:W-1(V391_D-1)->T:W-1(V392_D-1)) removing edge Edge(380->391,w:2.0)(GGCCACACGA...ACATTTCTAC:W1(V380_D-1)->C:W-1(V391_D-1)) Found potential edge: Edge(380->392,w:2.0) between GGCCACACGA...ACATTTCTAC:W1(V380_D-1) and T:W-1(V392_D-1) removing vertex T:W-1(V392_D-1) was concatenated into GGCCACACGA...CATTTCTACT:W1(V380_D-1) Want to move edge Edge(392->393,w:2.0)(T:W-1(V392_D-1)->G:W-1(V393_D-1)) to (GGCCACACGA...CATTTCTACT:W1(V380_D-1)->G:W-1(V393_D-1) adding edge: GGCCACACGA...CATTTCTACT:W1(V380_D-1) to G:W-1(V393_D-1) removing edge Edge(392->393,w:2.0)(T:W-1(V392_D-1)->G:W-1(V393_D-1)) removing edge Edge(380->392,w:2.0)(GGCCACACGA...CATTTCTACT:W1(V380_D-1)->T:W-1(V392_D-1)) Found potential edge: Edge(380->393,w:2.0) between GGCCACACGA...CATTTCTACT:W1(V380_D-1) and G:W-1(V393_D-1) removing vertex G:W-1(V393_D-1) was concatenated into GGCCACACGA...ATTTCTACTG:W1(V380_D-1) Want to move edge Edge(393->394,w:2.0)(G:W-1(V393_D-1)->G:W-1(V394_D-1)) to (GGCCACACGA...ATTTCTACTG:W1(V380_D-1)->G:W-1(V394_D-1) adding edge: GGCCACACGA...ATTTCTACTG:W1(V380_D-1) to G:W-1(V394_D-1) removing edge Edge(393->394,w:2.0)(G:W-1(V393_D-1)->G:W-1(V394_D-1)) removing edge Edge(380->393,w:2.0)(GGCCACACGA...ATTTCTACTG:W1(V380_D-1)->G:W-1(V393_D-1)) Found potential edge: Edge(380->394,w:2.0) between GGCCACACGA...ATTTCTACTG:W1(V380_D-1) and G:W-1(V394_D-1) removing vertex G:W-1(V394_D-1) was concatenated into GGCCACACGA...TTTCTACTGG:W1(V380_D-1) Want to move edge Edge(394->395,w:2.0)(G:W-1(V394_D-1)->C:W-1(V395_D-1)) to (GGCCACACGA...TTTCTACTGG:W1(V380_D-1)->C:W-1(V395_D-1) adding edge: GGCCACACGA...TTTCTACTGG:W1(V380_D-1) to C:W-1(V395_D-1) removing edge Edge(394->395,w:2.0)(G:W-1(V394_D-1)->C:W-1(V395_D-1)) removing edge Edge(380->394,w:2.0)(GGCCACACGA...TTTCTACTGG:W1(V380_D-1)->G:W-1(V394_D-1)) Found potential edge: Edge(380->395,w:2.0) between GGCCACACGA...TTTCTACTGG:W1(V380_D-1) and C:W-1(V395_D-1) removing vertex C:W-1(V395_D-1) was concatenated into GGCCACACGA...TTCTACTGGC:W1(V380_D-1) Want to move edge Edge(395->396,w:2.0)(C:W-1(V395_D-1)->T:W-1(V396_D-1)) to (GGCCACACGA...TTCTACTGGC:W1(V380_D-1)->T:W-1(V396_D-1) adding edge: GGCCACACGA...TTCTACTGGC:W1(V380_D-1) to T:W-1(V396_D-1) removing edge Edge(395->396,w:2.0)(C:W-1(V395_D-1)->T:W-1(V396_D-1)) removing edge Edge(380->395,w:2.0)(GGCCACACGA...TTCTACTGGC:W1(V380_D-1)->C:W-1(V395_D-1)) Found potential edge: Edge(380->396,w:2.0) between GGCCACACGA...TTCTACTGGC:W1(V380_D-1) and T:W-1(V396_D-1) removing vertex T:W-1(V396_D-1) was concatenated into GGCCACACGA...TCTACTGGCT:W1(V380_D-1) Want to move edge Edge(396->397,w:2.0)(T:W-1(V396_D-1)->A:W-1(V397_D-1)) to (GGCCACACGA...TCTACTGGCT:W1(V380_D-1)->A:W-1(V397_D-1) adding edge: GGCCACACGA...TCTACTGGCT:W1(V380_D-1) to A:W-1(V397_D-1) removing edge Edge(396->397,w:2.0)(T:W-1(V396_D-1)->A:W-1(V397_D-1)) removing edge Edge(380->396,w:2.0)(GGCCACACGA...TCTACTGGCT:W1(V380_D-1)->T:W-1(V396_D-1)) Found potential edge: Edge(380->397,w:2.0) between GGCCACACGA...TCTACTGGCT:W1(V380_D-1) and A:W-1(V397_D-1) removing vertex A:W-1(V397_D-1) was concatenated into GGCCACACGA...CTACTGGCTA:W1(V380_D-1) Want to move edge Edge(397->398,w:2.0)(A:W-1(V397_D-1)->C:W-1(V398_D-1)) to (GGCCACACGA...CTACTGGCTA:W1(V380_D-1)->C:W-1(V398_D-1) adding edge: GGCCACACGA...CTACTGGCTA:W1(V380_D-1) to C:W-1(V398_D-1) removing edge Edge(397->398,w:2.0)(A:W-1(V397_D-1)->C:W-1(V398_D-1)) removing edge Edge(380->397,w:2.0)(GGCCACACGA...CTACTGGCTA:W1(V380_D-1)->A:W-1(V397_D-1)) Found potential edge: Edge(380->398,w:2.0) between GGCCACACGA...CTACTGGCTA:W1(V380_D-1) and C:W-1(V398_D-1) removing vertex C:W-1(V398_D-1) was concatenated into GGCCACACGA...TACTGGCTAC:W1(V380_D-1) Want to move edge Edge(398->399,w:2.0)(C:W-1(V398_D-1)->A:W-1(V399_D-1)) to (GGCCACACGA...TACTGGCTAC:W1(V380_D-1)->A:W-1(V399_D-1) adding edge: GGCCACACGA...TACTGGCTAC:W1(V380_D-1) to A:W-1(V399_D-1) removing edge Edge(398->399,w:2.0)(C:W-1(V398_D-1)->A:W-1(V399_D-1)) removing edge Edge(380->398,w:2.0)(GGCCACACGA...TACTGGCTAC:W1(V380_D-1)->C:W-1(V398_D-1)) Found potential edge: Edge(380->399,w:2.0) between GGCCACACGA...TACTGGCTAC:W1(V380_D-1) and A:W-1(V399_D-1) removing vertex A:W-1(V399_D-1) was concatenated into GGCCACACGA...ACTGGCTACA:W1(V380_D-1) Want to move edge Edge(399->400,w:2.0)(A:W-1(V399_D-1)->A:W-1(V400_D-1)) to (GGCCACACGA...ACTGGCTACA:W1(V380_D-1)->A:W-1(V400_D-1) adding edge: GGCCACACGA...ACTGGCTACA:W1(V380_D-1) to A:W-1(V400_D-1) removing edge Edge(399->400,w:2.0)(A:W-1(V399_D-1)->A:W-1(V400_D-1)) removing edge Edge(380->399,w:2.0)(GGCCACACGA...ACTGGCTACA:W1(V380_D-1)->A:W-1(V399_D-1)) Found potential edge: Edge(380->400,w:2.0) between GGCCACACGA...ACTGGCTACA:W1(V380_D-1) and A:W-1(V400_D-1) removing vertex A:W-1(V400_D-1) was concatenated into GGCCACACGA...CTGGCTACAA:W1(V380_D-1) Want to move edge Edge(400->401,w:2.0)(A:W-1(V400_D-1)->A:W-1(V401_D-1)) to (GGCCACACGA...CTGGCTACAA:W1(V380_D-1)->A:W-1(V401_D-1) adding edge: GGCCACACGA...CTGGCTACAA:W1(V380_D-1) to A:W-1(V401_D-1) removing edge Edge(400->401,w:2.0)(A:W-1(V400_D-1)->A:W-1(V401_D-1)) removing edge Edge(380->400,w:2.0)(GGCCACACGA...CTGGCTACAA:W1(V380_D-1)->A:W-1(V400_D-1)) Found potential edge: Edge(380->401,w:2.0) between GGCCACACGA...CTGGCTACAA:W1(V380_D-1) and A:W-1(V401_D-1) removing vertex A:W-1(V401_D-1) was concatenated into GGCCACACGA...TGGCTACAAA:W1(V380_D-1) Want to move edge Edge(401->402,w:4.0)(A:W-1(V401_D-1)->C:W-1(V402_D-1)) to (GGCCACACGA...TGGCTACAAA:W1(V380_D-1)->C:W-1(V402_D-1) adding edge: GGCCACACGA...TGGCTACAAA:W1(V380_D-1) to C:W-1(V402_D-1) removing edge Edge(401->402,w:4.0)(A:W-1(V401_D-1)->C:W-1(V402_D-1)) removing edge Edge(380->401,w:2.0)(GGCCACACGA...TGGCTACAAA:W1(V380_D-1)->A:W-1(V401_D-1)) Found potential edge: Edge(380->402,w:4.0) between GGCCACACGA...TGGCTACAAA:W1(V380_D-1) and C:W-1(V402_D-1) removing vertex C:W-1(V402_D-1) was concatenated into GGCCACACGA...GGCTACAAAC:W1(V380_D-1) Want to move edge Edge(402->403,w:4.0)(C:W-1(V402_D-1)->A:W-1(V403_D-1)) to (GGCCACACGA...GGCTACAAAC:W1(V380_D-1)->A:W-1(V403_D-1) adding edge: GGCCACACGA...GGCTACAAAC:W1(V380_D-1) to A:W-1(V403_D-1) removing edge Edge(402->403,w:4.0)(C:W-1(V402_D-1)->A:W-1(V403_D-1)) removing edge Edge(380->402,w:4.0)(GGCCACACGA...GGCTACAAAC:W1(V380_D-1)->C:W-1(V402_D-1)) Found potential edge: Edge(380->403,w:4.0) between GGCCACACGA...GGCTACAAAC:W1(V380_D-1) and A:W-1(V403_D-1) removing vertex A:W-1(V403_D-1) was concatenated into GGCCACACGA...GCTACAAACA:W1(V380_D-1) Want to move edge Edge(403->404,w:4.0)(A:W-1(V403_D-1)->G:W-1(V404_D-1)) to (GGCCACACGA...GCTACAAACA:W1(V380_D-1)->G:W-1(V404_D-1) adding edge: GGCCACACGA...GCTACAAACA:W1(V380_D-1) to G:W-1(V404_D-1) removing edge Edge(403->404,w:4.0)(A:W-1(V403_D-1)->G:W-1(V404_D-1)) removing edge Edge(380->403,w:4.0)(GGCCACACGA...GCTACAAACA:W1(V380_D-1)->A:W-1(V403_D-1)) Found potential edge: Edge(380->404,w:4.0) between GGCCACACGA...GCTACAAACA:W1(V380_D-1) and G:W-1(V404_D-1) removing vertex G:W-1(V404_D-1) was concatenated into GGCCACACGA...CTACAAACAG:W1(V380_D-1) Want to move edge Edge(404->405,w:4.0)(G:W-1(V404_D-1)->A:W-1(V405_D-1)) to (GGCCACACGA...CTACAAACAG:W1(V380_D-1)->A:W-1(V405_D-1) adding edge: GGCCACACGA...CTACAAACAG:W1(V380_D-1) to A:W-1(V405_D-1) removing edge Edge(404->405,w:4.0)(G:W-1(V404_D-1)->A:W-1(V405_D-1)) removing edge Edge(380->404,w:4.0)(GGCCACACGA...CTACAAACAG:W1(V380_D-1)->G:W-1(V404_D-1)) Found potential edge: Edge(380->405,w:4.0) between GGCCACACGA...CTACAAACAG:W1(V380_D-1) and A:W-1(V405_D-1) removing vertex A:W-1(V405_D-1) was concatenated into GGCCACACGA...TACAAACAGA:W1(V380_D-1) Want to move edge Edge(405->406,w:4.0)(A:W-1(V405_D-1)->C:W-1(V406_D-1)) to (GGCCACACGA...TACAAACAGA:W1(V380_D-1)->C:W-1(V406_D-1) adding edge: GGCCACACGA...TACAAACAGA:W1(V380_D-1) to C:W-1(V406_D-1) removing edge Edge(405->406,w:4.0)(A:W-1(V405_D-1)->C:W-1(V406_D-1)) removing edge Edge(380->405,w:4.0)(GGCCACACGA...TACAAACAGA:W1(V380_D-1)->A:W-1(V405_D-1)) Found potential edge: Edge(380->406,w:4.0) between GGCCACACGA...TACAAACAGA:W1(V380_D-1) and C:W-1(V406_D-1) removing vertex C:W-1(V406_D-1) was concatenated into GGCCACACGA...ACAAACAGAC:W1(V380_D-1) Want to move edge Edge(406->407,w:4.0)(C:W-1(V406_D-1)->T:W-1(V407_D-1)) to (GGCCACACGA...ACAAACAGAC:W1(V380_D-1)->T:W-1(V407_D-1) adding edge: GGCCACACGA...ACAAACAGAC:W1(V380_D-1) to T:W-1(V407_D-1) removing edge Edge(406->407,w:4.0)(C:W-1(V406_D-1)->T:W-1(V407_D-1)) removing edge Edge(380->406,w:4.0)(GGCCACACGA...ACAAACAGAC:W1(V380_D-1)->C:W-1(V406_D-1)) Found potential edge: Edge(380->407,w:4.0) between GGCCACACGA...ACAAACAGAC:W1(V380_D-1) and T:W-1(V407_D-1) removing vertex T:W-1(V407_D-1) was concatenated into GGCCACACGA...CAAACAGACT:W1(V380_D-1) Want to move edge Edge(407->408,w:4.0)(T:W-1(V407_D-1)->T:W-1(V408_D-1)) to (GGCCACACGA...CAAACAGACT:W1(V380_D-1)->T:W-1(V408_D-1) adding edge: GGCCACACGA...CAAACAGACT:W1(V380_D-1) to T:W-1(V408_D-1) removing edge Edge(407->408,w:4.0)(T:W-1(V407_D-1)->T:W-1(V408_D-1)) removing edge Edge(380->407,w:4.0)(GGCCACACGA...CAAACAGACT:W1(V380_D-1)->T:W-1(V407_D-1)) Found potential edge: Edge(380->408,w:4.0) between GGCCACACGA...CAAACAGACT:W1(V380_D-1) and T:W-1(V408_D-1) removing vertex T:W-1(V408_D-1) was concatenated into GGCCACACGA...AAACAGACTT:W1(V380_D-1) Want to move edge Edge(408->409,w:4.0)(T:W-1(V408_D-1)->C:W-1(V409_D-1)) to (GGCCACACGA...AAACAGACTT:W1(V380_D-1)->C:W-1(V409_D-1) adding edge: GGCCACACGA...AAACAGACTT:W1(V380_D-1) to C:W-1(V409_D-1) removing edge Edge(408->409,w:4.0)(T:W-1(V408_D-1)->C:W-1(V409_D-1)) removing edge Edge(380->408,w:4.0)(GGCCACACGA...AAACAGACTT:W1(V380_D-1)->T:W-1(V408_D-1)) Found potential edge: Edge(380->409,w:4.0) between GGCCACACGA...AAACAGACTT:W1(V380_D-1) and C:W-1(V409_D-1) removing vertex C:W-1(V409_D-1) was concatenated into GGCCACACGA...AACAGACTTC:W1(V380_D-1) Want to move edge Edge(409->410,w:4.0)(C:W-1(V409_D-1)->C:W-1(V410_D-1)) to (GGCCACACGA...AACAGACTTC:W1(V380_D-1)->C:W-1(V410_D-1) adding edge: GGCCACACGA...AACAGACTTC:W1(V380_D-1) to C:W-1(V410_D-1) removing edge Edge(409->410,w:4.0)(C:W-1(V409_D-1)->C:W-1(V410_D-1)) removing edge Edge(380->409,w:4.0)(GGCCACACGA...AACAGACTTC:W1(V380_D-1)->C:W-1(V409_D-1)) Found potential edge: Edge(380->410,w:4.0) between GGCCACACGA...AACAGACTTC:W1(V380_D-1) and C:W-1(V410_D-1) removing vertex C:W-1(V410_D-1) was concatenated into GGCCACACGA...ACAGACTTCC:W1(V380_D-1) Want to move edge Edge(410->411,w:4.0)(C:W-1(V410_D-1)->T:W-1(V411_D-1)) to (GGCCACACGA...ACAGACTTCC:W1(V380_D-1)->T:W-1(V411_D-1) adding edge: GGCCACACGA...ACAGACTTCC:W1(V380_D-1) to T:W-1(V411_D-1) removing edge Edge(410->411,w:4.0)(C:W-1(V410_D-1)->T:W-1(V411_D-1)) removing edge Edge(380->410,w:4.0)(GGCCACACGA...ACAGACTTCC:W1(V380_D-1)->C:W-1(V410_D-1)) Found potential edge: Edge(380->411,w:4.0) between GGCCACACGA...ACAGACTTCC:W1(V380_D-1) and T:W-1(V411_D-1) removing vertex T:W-1(V411_D-1) was concatenated into GGCCACACGA...CAGACTTCCT:W1(V380_D-1) Want to move edge Edge(411->412,w:6.0)(T:W-1(V411_D-1)->C:W-1(V412_D-1)) to (GGCCACACGA...CAGACTTCCT:W1(V380_D-1)->C:W-1(V412_D-1) adding edge: GGCCACACGA...CAGACTTCCT:W1(V380_D-1) to C:W-1(V412_D-1) removing edge Edge(411->412,w:6.0)(T:W-1(V411_D-1)->C:W-1(V412_D-1)) removing edge Edge(380->411,w:4.0)(GGCCACACGA...CAGACTTCCT:W1(V380_D-1)->T:W-1(V411_D-1)) Found potential edge: Edge(380->412,w:6.0) between GGCCACACGA...CAGACTTCCT:W1(V380_D-1) and C:W-1(V412_D-1) removing vertex C:W-1(V412_D-1) was concatenated into GGCCACACGA...AGACTTCCTC:W2(V380_D-1) Want to move edge Edge(412->413,w:6.0)(C:W-1(V412_D-1)->A:W-1(V413_D-1)) to (GGCCACACGA...AGACTTCCTC:W2(V380_D-1)->A:W-1(V413_D-1) adding edge: GGCCACACGA...AGACTTCCTC:W2(V380_D-1) to A:W-1(V413_D-1) removing edge Edge(412->413,w:6.0)(C:W-1(V412_D-1)->A:W-1(V413_D-1)) removing edge Edge(380->412,w:6.0)(GGCCACACGA...AGACTTCCTC:W2(V380_D-1)->C:W-1(V412_D-1)) Found potential edge: Edge(380->413,w:6.0) between GGCCACACGA...AGACTTCCTC:W2(V380_D-1) and A:W-1(V413_D-1) removing vertex A:W-1(V413_D-1) was concatenated into GGCCACACGA...GACTTCCTCA:W2(V380_D-1) Want to move edge Edge(413->414,w:8.0)(A:W-1(V413_D-1)->A:W-1(V414_D-1)) to (GGCCACACGA...GACTTCCTCA:W2(V380_D-1)->A:W-1(V414_D-1) adding edge: GGCCACACGA...GACTTCCTCA:W2(V380_D-1) to A:W-1(V414_D-1) removing edge Edge(413->414,w:8.0)(A:W-1(V413_D-1)->A:W-1(V414_D-1)) removing edge Edge(380->413,w:6.0)(GGCCACACGA...GACTTCCTCA:W2(V380_D-1)->A:W-1(V413_D-1)) Found potential edge: Edge(380->414,w:8.0) between GGCCACACGA...GACTTCCTCA:W2(V380_D-1) and A:W-1(V414_D-1) removing vertex A:W-1(V414_D-1) was concatenated into GGCCACACGA...ACTTCCTCAA:W2(V380_D-1) Want to move edge Edge(414->415,w:8.0)(A:W-1(V414_D-1)->G:W-1(V415_D-1)) to (GGCCACACGA...ACTTCCTCAA:W2(V380_D-1)->G:W-1(V415_D-1) adding edge: GGCCACACGA...ACTTCCTCAA:W2(V380_D-1) to G:W-1(V415_D-1) removing edge Edge(414->415,w:8.0)(A:W-1(V414_D-1)->G:W-1(V415_D-1)) removing edge Edge(380->414,w:8.0)(GGCCACACGA...ACTTCCTCAA:W2(V380_D-1)->A:W-1(V414_D-1)) Found potential edge: Edge(380->415,w:8.0) between GGCCACACGA...ACTTCCTCAA:W2(V380_D-1) and G:W-1(V415_D-1) removing vertex G:W-1(V415_D-1) was concatenated into GGCCACACGA...CTTCCTCAAG:W2(V380_D-1) Want to move edge Edge(415->416,w:6.0)(G:W-1(V415_D-1)->C:W-1(V416_D-1)) to (GGCCACACGA...CTTCCTCAAG:W2(V380_D-1)->C:W-1(V416_D-1) adding edge: GGCCACACGA...CTTCCTCAAG:W2(V380_D-1) to C:W-1(V416_D-1) Want to move edge Edge(415->885,w:2.0)(G:W-1(V415_D-1)->G:W-1(V885_D-1)) to (GGCCACACGA...CTTCCTCAAG:W2(V380_D-1)->G:W-1(V885_D-1) adding edge: GGCCACACGA...CTTCCTCAAG:W2(V380_D-1) to G:W-1(V885_D-1) removing edge Edge(415->416,w:6.0)(G:W-1(V415_D-1)->C:W-1(V416_D-1)) removing edge Edge(415->885,w:2.0)(G:W-1(V415_D-1)->G:W-1(V885_D-1)) removing edge Edge(380->415,w:8.0)(GGCCACACGA...CTTCCTCAAG:W2(V380_D-1)->G:W-1(V415_D-1)) Found potential edge: Edge(416->417,w:6.0) between C:W-1(V416_D-1) and C:W-1(V417_D-1) removing vertex C:W-1(V417_D-1) was concatenated into CC:W6(V416_D-1) Want to move edge Edge(417->418,w:6.0)(C:W-1(V417_D-1)->T:W-1(V418_D-1)) to (CC:W6(V416_D-1)->T:W-1(V418_D-1) adding edge: CC:W6(V416_D-1) to T:W-1(V418_D-1) removing edge Edge(417->418,w:6.0)(C:W-1(V417_D-1)->T:W-1(V418_D-1)) removing edge Edge(416->417,w:6.0)(CC:W6(V416_D-1)->C:W-1(V417_D-1)) Found potential edge: Edge(416->418,w:6.0) between CC:W6(V416_D-1) and T:W-1(V418_D-1) removing vertex T:W-1(V418_D-1) was concatenated into CCT:W6(V416_D-1) Want to move edge Edge(418->419,w:6.0)(T:W-1(V418_D-1)->C:W-1(V419_D-1)) to (CCT:W6(V416_D-1)->C:W-1(V419_D-1) adding edge: CCT:W6(V416_D-1) to C:W-1(V419_D-1) removing edge Edge(418->419,w:6.0)(T:W-1(V418_D-1)->C:W-1(V419_D-1)) removing edge Edge(416->418,w:6.0)(CCT:W6(V416_D-1)->T:W-1(V418_D-1)) Found potential edge: Edge(416->419,w:6.0) between CCT:W6(V416_D-1) and C:W-1(V419_D-1) removing vertex C:W-1(V419_D-1) was concatenated into CCTC:W6(V416_D-1) Want to move edge Edge(419->420,w:6.0)(C:W-1(V419_D-1)->A:W-1(V420_D-1)) to (CCTC:W6(V416_D-1)->A:W-1(V420_D-1) adding edge: CCTC:W6(V416_D-1) to A:W-1(V420_D-1) removing edge Edge(419->420,w:6.0)(C:W-1(V419_D-1)->A:W-1(V420_D-1)) removing edge Edge(416->419,w:6.0)(CCTC:W6(V416_D-1)->C:W-1(V419_D-1)) Found potential edge: Edge(416->420,w:6.0) between CCTC:W6(V416_D-1) and A:W-1(V420_D-1) removing vertex A:W-1(V420_D-1) was concatenated into CCTCA:W6(V416_D-1) Want to move edge Edge(420->421,w:6.0)(A:W-1(V420_D-1)->T:W-1(V421_D-1)) to (CCTCA:W6(V416_D-1)->T:W-1(V421_D-1) adding edge: CCTCA:W6(V416_D-1) to T:W-1(V421_D-1) removing edge Edge(420->421,w:6.0)(A:W-1(V420_D-1)->T:W-1(V421_D-1)) removing edge Edge(416->420,w:6.0)(CCTCA:W6(V416_D-1)->A:W-1(V420_D-1)) Found potential edge: Edge(416->421,w:6.0) between CCTCA:W6(V416_D-1) and T:W-1(V421_D-1) removing vertex T:W-1(V421_D-1) was concatenated into CCTCAT:W6(V416_D-1) Want to move edge Edge(421->422,w:6.0)(T:W-1(V421_D-1)->C:W-1(V422_D-1)) to (CCTCAT:W6(V416_D-1)->C:W-1(V422_D-1) adding edge: CCTCAT:W6(V416_D-1) to C:W-1(V422_D-1) removing edge Edge(421->422,w:6.0)(T:W-1(V421_D-1)->C:W-1(V422_D-1)) removing edge Edge(416->421,w:6.0)(CCTCAT:W6(V416_D-1)->T:W-1(V421_D-1)) Found potential edge: Edge(416->422,w:6.0) between CCTCAT:W6(V416_D-1) and C:W-1(V422_D-1) removing vertex C:W-1(V422_D-1) was concatenated into CCTCATC:W6(V416_D-1) Want to move edge Edge(422->423,w:8.0)(C:W-1(V422_D-1)->A:W-1(V423_D-1)) to (CCTCATC:W6(V416_D-1)->A:W-1(V423_D-1) adding edge: CCTCATC:W6(V416_D-1) to A:W-1(V423_D-1) removing edge Edge(422->423,w:8.0)(C:W-1(V422_D-1)->A:W-1(V423_D-1)) removing edge Edge(416->422,w:6.0)(CCTCATC:W6(V416_D-1)->C:W-1(V422_D-1)) Found potential edge: Edge(416->423,w:8.0) between CCTCATC:W6(V416_D-1) and A:W-1(V423_D-1) removing vertex A:W-1(V423_D-1) was concatenated into CCTCATCA:W6(V416_D-1) Want to move edge Edge(423->424,w:8.0)(A:W-1(V423_D-1)->G:W-1(V424_D-1)) to (CCTCATCA:W6(V416_D-1)->G:W-1(V424_D-1) adding edge: CCTCATCA:W6(V416_D-1) to G:W-1(V424_D-1) removing edge Edge(423->424,w:8.0)(A:W-1(V423_D-1)->G:W-1(V424_D-1)) removing edge Edge(416->423,w:8.0)(CCTCATCA:W6(V416_D-1)->A:W-1(V423_D-1)) Found potential edge: Edge(416->424,w:8.0) between CCTCATCA:W6(V416_D-1) and G:W-1(V424_D-1) removing vertex G:W-1(V424_D-1) was concatenated into CCTCATCAG:W7(V416_D-1) Want to move edge Edge(424->425,w:8.0)(G:W-1(V424_D-1)->C:W-1(V425_D-1)) to (CCTCATCAG:W7(V416_D-1)->C:W-1(V425_D-1) adding edge: CCTCATCAG:W7(V416_D-1) to C:W-1(V425_D-1) removing edge Edge(424->425,w:8.0)(G:W-1(V424_D-1)->C:W-1(V425_D-1)) removing edge Edge(416->424,w:8.0)(CCTCATCAG:W7(V416_D-1)->G:W-1(V424_D-1)) Found potential edge: Edge(416->425,w:8.0) between CCTCATCAG:W7(V416_D-1) and C:W-1(V425_D-1) removing vertex C:W-1(V425_D-1) was concatenated into CCTCATCAGC:W7(V416_D-1) Want to move edge Edge(425->426,w:8.0)(C:W-1(V425_D-1)->A:W-1(V426_D-1)) to (CCTCATCAGC:W7(V416_D-1)->A:W-1(V426_D-1) adding edge: CCTCATCAGC:W7(V416_D-1) to A:W-1(V426_D-1) removing edge Edge(425->426,w:8.0)(C:W-1(V425_D-1)->A:W-1(V426_D-1)) removing edge Edge(416->425,w:8.0)(CCTCATCAGC:W7(V416_D-1)->C:W-1(V425_D-1)) Found potential edge: Edge(416->426,w:8.0) between CCTCATCAGC:W7(V416_D-1) and A:W-1(V426_D-1) removing vertex A:W-1(V426_D-1) was concatenated into CCTCATCAGCA:W7(V416_D-1) Want to move edge Edge(426->427,w:8.0)(A:W-1(V426_D-1)->A:W-1(V427_D-1)) to (CCTCATCAGCA:W7(V416_D-1)->A:W-1(V427_D-1) adding edge: CCTCATCAGCA:W7(V416_D-1) to A:W-1(V427_D-1) removing edge Edge(426->427,w:8.0)(A:W-1(V426_D-1)->A:W-1(V427_D-1)) removing edge Edge(416->426,w:8.0)(CCTCATCAGCA:W7(V416_D-1)->A:W-1(V426_D-1)) Found potential edge: Edge(416->427,w:8.0) between CCTCATCAGCA:W7(V416_D-1) and A:W-1(V427_D-1) removing vertex A:W-1(V427_D-1) was concatenated into CCTCATCAGCAA:W7(V416_D-1) Want to move edge Edge(427->428,w:8.0)(A:W-1(V427_D-1)->G:W-1(V428_D-1)) to (CCTCATCAGCAA:W7(V416_D-1)->G:W-1(V428_D-1) adding edge: CCTCATCAGCAA:W7(V416_D-1) to G:W-1(V428_D-1) removing edge Edge(427->428,w:8.0)(A:W-1(V427_D-1)->G:W-1(V428_D-1)) removing edge Edge(416->427,w:8.0)(CCTCATCAGCAA:W7(V416_D-1)->A:W-1(V427_D-1)) Found potential edge: Edge(416->428,w:8.0) between CCTCATCAGCAA:W7(V416_D-1) and G:W-1(V428_D-1) removing vertex G:W-1(V428_D-1) was concatenated into CCTCATCAGCAAG:W7(V416_D-1) Want to move edge Edge(428->429,w:8.0)(G:W-1(V428_D-1)->A:W-1(V429_D-1)) to (CCTCATCAGCAAG:W7(V416_D-1)->A:W-1(V429_D-1) adding edge: CCTCATCAGCAAG:W7(V416_D-1) to A:W-1(V429_D-1) removing edge Edge(428->429,w:8.0)(G:W-1(V428_D-1)->A:W-1(V429_D-1)) removing edge Edge(416->428,w:8.0)(CCTCATCAGCAAG:W7(V416_D-1)->G:W-1(V428_D-1)) Found potential edge: Edge(416->429,w:8.0) between CCTCATCAGCAAG:W7(V416_D-1) and A:W-1(V429_D-1) removing vertex A:W-1(V429_D-1) was concatenated into CCTCATCAGCAAGA:W7(V416_D-1) Want to move edge Edge(429->430,w:8.0)(A:W-1(V429_D-1)->A:W-1(V430_D-1)) to (CCTCATCAGCAAGA:W7(V416_D-1)->A:W-1(V430_D-1) adding edge: CCTCATCAGCAAGA:W7(V416_D-1) to A:W-1(V430_D-1) removing edge Edge(429->430,w:8.0)(A:W-1(V429_D-1)->A:W-1(V430_D-1)) removing edge Edge(416->429,w:8.0)(CCTCATCAGCAAGA:W7(V416_D-1)->A:W-1(V429_D-1)) Found potential edge: Edge(416->430,w:8.0) between CCTCATCAGCAAGA:W7(V416_D-1) and A:W-1(V430_D-1) removing vertex A:W-1(V430_D-1) was concatenated into CCTCATCAGCAAGAA:W7(V416_D-1) Want to move edge Edge(430->431,w:8.0)(A:W-1(V430_D-1)->G:W-1(V431_D-1)) to (CCTCATCAGCAAGAA:W7(V416_D-1)->G:W-1(V431_D-1) adding edge: CCTCATCAGCAAGAA:W7(V416_D-1) to G:W-1(V431_D-1) removing edge Edge(430->431,w:8.0)(A:W-1(V430_D-1)->G:W-1(V431_D-1)) removing edge Edge(416->430,w:8.0)(CCTCATCAGCAAGAA:W7(V416_D-1)->A:W-1(V430_D-1)) Found potential edge: Edge(416->431,w:8.0) between CCTCATCAGCAAGAA:W7(V416_D-1) and G:W-1(V431_D-1) removing vertex G:W-1(V431_D-1) was concatenated into CCTCATCAGCAAGAAG:W7(V416_D-1) Want to move edge Edge(431->432,w:8.0)(G:W-1(V431_D-1)->A:W-1(V432_D-1)) to (CCTCATCAGCAAGAAG:W7(V416_D-1)->A:W-1(V432_D-1) adding edge: CCTCATCAGCAAGAAG:W7(V416_D-1) to A:W-1(V432_D-1) removing edge Edge(431->432,w:8.0)(G:W-1(V431_D-1)->A:W-1(V432_D-1)) removing edge Edge(416->431,w:8.0)(CCTCATCAGCAAGAAG:W7(V416_D-1)->G:W-1(V431_D-1)) Found potential edge: Edge(416->432,w:8.0) between CCTCATCAGCAAGAAG:W7(V416_D-1) and A:W-1(V432_D-1) removing vertex A:W-1(V432_D-1) was concatenated into CCTCATCAGCAAGAAGA:W7(V416_D-1) Want to move edge Edge(432->433,w:6.0)(A:W-1(V432_D-1)->A:W-1(V433_D-1)) to (CCTCATCAGCAAGAAGA:W7(V416_D-1)->A:W-1(V433_D-1) adding edge: CCTCATCAGCAAGAAGA:W7(V416_D-1) to A:W-1(V433_D-1) removing edge Edge(432->433,w:6.0)(A:W-1(V432_D-1)->A:W-1(V433_D-1)) removing edge Edge(416->432,w:8.0)(CCTCATCAGCAAGAAGA:W7(V416_D-1)->A:W-1(V432_D-1)) Found potential edge: Edge(416->433,w:6.0) between CCTCATCAGCAAGAAGA:W7(V416_D-1) and A:W-1(V433_D-1) removing vertex A:W-1(V433_D-1) was concatenated into CCTCATCAGCAAGAAGAA:W7(V416_D-1) Want to move edge Edge(433->434,w:6.0)(A:W-1(V433_D-1)->A:W-1(V434_D-1)) to (CCTCATCAGCAAGAAGAA:W7(V416_D-1)->A:W-1(V434_D-1) adding edge: CCTCATCAGCAAGAAGAA:W7(V416_D-1) to A:W-1(V434_D-1) removing edge Edge(433->434,w:6.0)(A:W-1(V433_D-1)->A:W-1(V434_D-1)) removing edge Edge(416->433,w:6.0)(CCTCATCAGCAAGAAGAA:W7(V416_D-1)->A:W-1(V433_D-1)) Found potential edge: Edge(416->434,w:6.0) between CCTCATCAGCAAGAAGAA:W7(V416_D-1) and A:W-1(V434_D-1) removing vertex A:W-1(V434_D-1) was concatenated into CCTCATCAGCAAGAAGAAA:W7(V416_D-1) Want to move edge Edge(434->435,w:6.0)(A:W-1(V434_D-1)->T:W-1(V435_D-1)) to (CCTCATCAGCAAGAAGAAA:W7(V416_D-1)->T:W-1(V435_D-1) adding edge: CCTCATCAGCAAGAAGAAA:W7(V416_D-1) to T:W-1(V435_D-1) removing edge Edge(434->435,w:6.0)(A:W-1(V434_D-1)->T:W-1(V435_D-1)) removing edge Edge(416->434,w:6.0)(CCTCATCAGCAAGAAGAAA:W7(V416_D-1)->A:W-1(V434_D-1)) Found potential edge: Edge(416->435,w:6.0) between CCTCATCAGCAAGAAGAAA:W7(V416_D-1) and T:W-1(V435_D-1) removing vertex T:W-1(V435_D-1) was concatenated into CCTCATCAGCAAGAAGAAAT:W7(V416_D-1) Want to move edge Edge(435->436,w:6.0)(T:W-1(V435_D-1)->C:W-1(V436_D-1)) to (CCTCATCAGCAAGAAGAAAT:W7(V416_D-1)->C:W-1(V436_D-1) adding edge: CCTCATCAGCAAGAAGAAAT:W7(V416_D-1) to C:W-1(V436_D-1) removing edge Edge(435->436,w:6.0)(T:W-1(V435_D-1)->C:W-1(V436_D-1)) removing edge Edge(416->435,w:6.0)(CCTCATCAGCAAGAAGAAAT:W7(V416_D-1)->T:W-1(V435_D-1)) Found potential edge: Edge(416->436,w:6.0) between CCTCATCAGCAAGAAGAAAT:W7(V416_D-1) and C:W-1(V436_D-1) removing vertex C:W-1(V436_D-1) was concatenated into CCTCATCAGCAAGAAGAAATC:W7(V416_D-1) Want to move edge Edge(436->437,w:6.0)(C:W-1(V436_D-1)->T:W-1(V437_D-1)) to (CCTCATCAGCAAGAAGAAATC:W7(V416_D-1)->T:W-1(V437_D-1) adding edge: CCTCATCAGCAAGAAGAAATC:W7(V416_D-1) to T:W-1(V437_D-1) removing edge Edge(436->437,w:6.0)(C:W-1(V436_D-1)->T:W-1(V437_D-1)) removing edge Edge(416->436,w:6.0)(CCTCATCAGCAAGAAGAAATC:W7(V416_D-1)->C:W-1(V436_D-1)) Found potential edge: Edge(416->437,w:6.0) between CCTCATCAGCAAGAAGAAATC:W7(V416_D-1) and T:W-1(V437_D-1) removing vertex T:W-1(V437_D-1) was concatenated into CCTCATCAGCAAGAAGAAATCT:W7(V416_D-1) Want to move edge Edge(437->438,w:6.0)(T:W-1(V437_D-1)->T:W-1(V438_D-1)) to (CCTCATCAGCAAGAAGAAATCT:W7(V416_D-1)->T:W-1(V438_D-1) adding edge: CCTCATCAGCAAGAAGAAATCT:W7(V416_D-1) to T:W-1(V438_D-1) removing edge Edge(437->438,w:6.0)(T:W-1(V437_D-1)->T:W-1(V438_D-1)) removing edge Edge(416->437,w:6.0)(CCTCATCAGCAAGAAGAAATCT:W7(V416_D-1)->T:W-1(V437_D-1)) Found potential edge: Edge(416->438,w:6.0) between CCTCATCAGCAAGAAGAAATCT:W7(V416_D-1) and T:W-1(V438_D-1) removing vertex T:W-1(V438_D-1) was concatenated into CCTCATCAGCAAGAAGAAATCTT:W7(V416_D-1) Want to move edge Edge(438->439,w:6.0)(T:W-1(V438_D-1)->T:W-1(V439_D-1)) to (CCTCATCAGCAAGAAGAAATCTT:W7(V416_D-1)->T:W-1(V439_D-1) adding edge: CCTCATCAGCAAGAAGAAATCTT:W7(V416_D-1) to T:W-1(V439_D-1) removing edge Edge(438->439,w:6.0)(T:W-1(V438_D-1)->T:W-1(V439_D-1)) removing edge Edge(416->438,w:6.0)(CCTCATCAGCAAGAAGAAATCTT:W7(V416_D-1)->T:W-1(V438_D-1)) Found potential edge: Edge(416->439,w:6.0) between CCTCATCAGCAAGAAGAAATCTT:W7(V416_D-1) and T:W-1(V439_D-1) removing vertex T:W-1(V439_D-1) was concatenated into CCTCATCAGCAAGAAGAAATCTTT:W7(V416_D-1) Want to move edge Edge(439->440,w:6.0)(T:W-1(V439_D-1)->C:W-1(V440_D-1)) to (CCTCATCAGCAAGAAGAAATCTTT:W7(V416_D-1)->C:W-1(V440_D-1) adding edge: CCTCATCAGCAAGAAGAAATCTTT:W7(V416_D-1) to C:W-1(V440_D-1) removing edge Edge(439->440,w:6.0)(T:W-1(V439_D-1)->C:W-1(V440_D-1)) removing edge Edge(416->439,w:6.0)(CCTCATCAGCAAGAAGAAATCTTT:W7(V416_D-1)->T:W-1(V439_D-1)) Found potential edge: Edge(440->441,w:8.0) between C:W-1(V440_D-1) and T:W-1(V441_D-1) removing vertex T:W-1(V441_D-1) was concatenated into CT:W8(V440_D-1) Want to move edge Edge(441->442,w:8.0)(T:W-1(V441_D-1)->T:W-1(V442_D-1)) to (CT:W8(V440_D-1)->T:W-1(V442_D-1) adding edge: CT:W8(V440_D-1) to T:W-1(V442_D-1) removing edge Edge(441->442,w:8.0)(T:W-1(V441_D-1)->T:W-1(V442_D-1)) removing edge Edge(440->441,w:8.0)(CT:W8(V440_D-1)->T:W-1(V441_D-1)) Found potential edge: Edge(440->442,w:8.0) between CT:W8(V440_D-1) and T:W-1(V442_D-1) removing vertex T:W-1(V442_D-1) was concatenated into CTT:W8(V440_D-1) Want to move edge Edge(442->443,w:8.0)(T:W-1(V442_D-1)->T:W-1(V443_D-1)) to (CTT:W8(V440_D-1)->T:W-1(V443_D-1) adding edge: CTT:W8(V440_D-1) to T:W-1(V443_D-1) removing edge Edge(442->443,w:8.0)(T:W-1(V442_D-1)->T:W-1(V443_D-1)) removing edge Edge(440->442,w:8.0)(CTT:W8(V440_D-1)->T:W-1(V442_D-1)) Found potential edge: Edge(440->443,w:8.0) between CTT:W8(V440_D-1) and T:W-1(V443_D-1) removing vertex T:W-1(V443_D-1) was concatenated into CTTT:W8(V440_D-1) Want to move edge Edge(443->444,w:8.0)(T:W-1(V443_D-1)->C:W-1(V444_D-1)) to (CTTT:W8(V440_D-1)->C:W-1(V444_D-1) adding edge: CTTT:W8(V440_D-1) to C:W-1(V444_D-1) removing edge Edge(443->444,w:8.0)(T:W-1(V443_D-1)->C:W-1(V444_D-1)) removing edge Edge(440->443,w:8.0)(CTTT:W8(V440_D-1)->T:W-1(V443_D-1)) Found potential edge: Edge(440->444,w:8.0) between CTTT:W8(V440_D-1) and C:W-1(V444_D-1) removing vertex C:W-1(V444_D-1) was concatenated into CTTTC:W8(V440_D-1) Want to move edge Edge(444->445,w:8.0)(C:W-1(V444_D-1)->C:W-1(V445_D-1)) to (CTTTC:W8(V440_D-1)->C:W-1(V445_D-1) adding edge: CTTTC:W8(V440_D-1) to C:W-1(V445_D-1) removing edge Edge(444->445,w:8.0)(C:W-1(V444_D-1)->C:W-1(V445_D-1)) removing edge Edge(440->444,w:8.0)(CTTTC:W8(V440_D-1)->C:W-1(V444_D-1)) Found potential edge: Edge(440->445,w:8.0) between CTTTC:W8(V440_D-1) and C:W-1(V445_D-1) removing vertex C:W-1(V445_D-1) was concatenated into CTTTCC:W8(V440_D-1) Want to move edge Edge(445->446,w:8.0)(C:W-1(V445_D-1)->A:W-1(V446_D-1)) to (CTTTCC:W8(V440_D-1)->A:W-1(V446_D-1) adding edge: CTTTCC:W8(V440_D-1) to A:W-1(V446_D-1) removing edge Edge(445->446,w:8.0)(C:W-1(V445_D-1)->A:W-1(V446_D-1)) removing edge Edge(440->445,w:8.0)(CTTTCC:W8(V440_D-1)->C:W-1(V445_D-1)) Found potential edge: Edge(440->446,w:8.0) between CTTTCC:W8(V440_D-1) and A:W-1(V446_D-1) removing vertex A:W-1(V446_D-1) was concatenated into CTTTCCA:W8(V440_D-1) Want to move edge Edge(446->447,w:8.0)(A:W-1(V446_D-1)->A:W-1(V447_D-1)) to (CTTTCCA:W8(V440_D-1)->A:W-1(V447_D-1) adding edge: CTTTCCA:W8(V440_D-1) to A:W-1(V447_D-1) removing edge Edge(446->447,w:8.0)(A:W-1(V446_D-1)->A:W-1(V447_D-1)) removing edge Edge(440->446,w:8.0)(CTTTCCA:W8(V440_D-1)->A:W-1(V446_D-1)) Found potential edge: Edge(440->447,w:8.0) between CTTTCCA:W8(V440_D-1) and A:W-1(V447_D-1) removing vertex A:W-1(V447_D-1) was concatenated into CTTTCCAA:W8(V440_D-1) Want to move edge Edge(447->448,w:8.0)(A:W-1(V447_D-1)->G:W-1(V448_D-1)) to (CTTTCCAA:W8(V440_D-1)->G:W-1(V448_D-1) adding edge: CTTTCCAA:W8(V440_D-1) to G:W-1(V448_D-1) removing edge Edge(447->448,w:8.0)(A:W-1(V447_D-1)->G:W-1(V448_D-1)) removing edge Edge(440->447,w:8.0)(CTTTCCAA:W8(V440_D-1)->A:W-1(V447_D-1)) Found potential edge: Edge(440->448,w:8.0) between CTTTCCAA:W8(V440_D-1) and G:W-1(V448_D-1) removing vertex G:W-1(V448_D-1) was concatenated into CTTTCCAAG:W8(V440_D-1) Want to move edge Edge(448->449,w:8.0)(G:W-1(V448_D-1)->T:W-1(V449_D-1)) to (CTTTCCAAG:W8(V440_D-1)->T:W-1(V449_D-1) adding edge: CTTTCCAAG:W8(V440_D-1) to T:W-1(V449_D-1) removing edge Edge(448->449,w:8.0)(G:W-1(V448_D-1)->T:W-1(V449_D-1)) removing edge Edge(440->448,w:8.0)(CTTTCCAAG:W8(V440_D-1)->G:W-1(V448_D-1)) Found potential edge: Edge(440->449,w:8.0) between CTTTCCAAG:W8(V440_D-1) and T:W-1(V449_D-1) removing vertex T:W-1(V449_D-1) was concatenated into CTTTCCAAGT:W8(V440_D-1) Want to move edge Edge(449->450,w:8.0)(T:W-1(V449_D-1)->A:W-1(V450_D-1)) to (CTTTCCAAGT:W8(V440_D-1)->A:W-1(V450_D-1) adding edge: CTTTCCAAGT:W8(V440_D-1) to A:W-1(V450_D-1) removing edge Edge(449->450,w:8.0)(T:W-1(V449_D-1)->A:W-1(V450_D-1)) removing edge Edge(440->449,w:8.0)(CTTTCCAAGT:W8(V440_D-1)->T:W-1(V449_D-1)) Found potential edge: Edge(440->450,w:8.0) between CTTTCCAAGT:W8(V440_D-1) and A:W-1(V450_D-1) removing vertex A:W-1(V450_D-1) was concatenated into CTTTCCAAGTA:W8(V440_D-1) Want to move edge Edge(450->451,w:8.0)(A:W-1(V450_D-1)->G:W-1(V451_D-1)) to (CTTTCCAAGTA:W8(V440_D-1)->G:W-1(V451_D-1) adding edge: CTTTCCAAGTA:W8(V440_D-1) to G:W-1(V451_D-1) removing edge Edge(450->451,w:8.0)(A:W-1(V450_D-1)->G:W-1(V451_D-1)) removing edge Edge(440->450,w:8.0)(CTTTCCAAGTA:W8(V440_D-1)->A:W-1(V450_D-1)) Found potential edge: Edge(451->452,w:10.0) between G:W-1(V451_D-1) and T:W-1(V452_D-1) removing vertex T:W-1(V452_D-1) was concatenated into GT:W10(V451_D-1) Want to move edge Edge(452->453,w:10.0)(T:W-1(V452_D-1)->G:W-1(V453_D-1)) to (GT:W10(V451_D-1)->G:W-1(V453_D-1) adding edge: GT:W10(V451_D-1) to G:W-1(V453_D-1) removing edge Edge(452->453,w:10.0)(T:W-1(V452_D-1)->G:W-1(V453_D-1)) removing edge Edge(451->452,w:10.0)(GT:W10(V451_D-1)->T:W-1(V452_D-1)) Found potential edge: Edge(451->453,w:10.0) between GT:W10(V451_D-1) and G:W-1(V453_D-1) removing vertex G:W-1(V453_D-1) was concatenated into GTG:W10(V451_D-1) Want to move edge Edge(453->454,w:8.0)(G:W-1(V453_D-1)->T:W-1(V454_D-1)) to (GTG:W10(V451_D-1)->T:W-1(V454_D-1) adding edge: GTG:W10(V451_D-1) to T:W-1(V454_D-1) removing edge Edge(453->454,w:8.0)(G:W-1(V453_D-1)->T:W-1(V454_D-1)) removing edge Edge(451->453,w:10.0)(GTG:W10(V451_D-1)->G:W-1(V453_D-1)) Found potential edge: Edge(451->454,w:8.0) between GTG:W10(V451_D-1) and T:W-1(V454_D-1) removing vertex T:W-1(V454_D-1) was concatenated into GTGT:W9(V451_D-1) Want to move edge Edge(454->455,w:8.0)(T:W-1(V454_D-1)->C:W-1(V455_D-1)) to (GTGT:W9(V451_D-1)->C:W-1(V455_D-1) adding edge: GTGT:W9(V451_D-1) to C:W-1(V455_D-1) removing edge Edge(454->455,w:8.0)(T:W-1(V454_D-1)->C:W-1(V455_D-1)) removing edge Edge(451->454,w:8.0)(GTGT:W9(V451_D-1)->T:W-1(V454_D-1)) Found potential edge: Edge(451->455,w:8.0) between GTGT:W9(V451_D-1) and C:W-1(V455_D-1) removing vertex C:W-1(V455_D-1) was concatenated into GTGTC:W9(V451_D-1) Want to move edge Edge(455->456,w:8.0)(C:W-1(V455_D-1)->T:W-1(V456_D-1)) to (GTGTC:W9(V451_D-1)->T:W-1(V456_D-1) adding edge: GTGTC:W9(V451_D-1) to T:W-1(V456_D-1) removing edge Edge(455->456,w:8.0)(C:W-1(V455_D-1)->T:W-1(V456_D-1)) removing edge Edge(451->455,w:8.0)(GTGTC:W9(V451_D-1)->C:W-1(V455_D-1)) Found potential edge: Edge(451->456,w:8.0) between GTGTC:W9(V451_D-1) and T:W-1(V456_D-1) removing vertex T:W-1(V456_D-1) was concatenated into GTGTCT:W9(V451_D-1) Want to move edge Edge(456->457,w:8.0)(T:W-1(V456_D-1)->T:W-1(V457_D-1)) to (GTGTCT:W9(V451_D-1)->T:W-1(V457_D-1) adding edge: GTGTCT:W9(V451_D-1) to T:W-1(V457_D-1) removing edge Edge(456->457,w:8.0)(T:W-1(V456_D-1)->T:W-1(V457_D-1)) removing edge Edge(451->456,w:8.0)(GTGTCT:W9(V451_D-1)->T:W-1(V456_D-1)) Found potential edge: Edge(451->457,w:8.0) between GTGTCT:W9(V451_D-1) and T:W-1(V457_D-1) removing vertex T:W-1(V457_D-1) was concatenated into GTGTCTT:W9(V451_D-1) Want to move edge Edge(457->458,w:8.0)(T:W-1(V457_D-1)->A:W-1(V458_D-1)) to (GTGTCTT:W9(V451_D-1)->A:W-1(V458_D-1) adding edge: GTGTCTT:W9(V451_D-1) to A:W-1(V458_D-1) removing edge Edge(457->458,w:8.0)(T:W-1(V457_D-1)->A:W-1(V458_D-1)) removing edge Edge(451->457,w:8.0)(GTGTCTT:W9(V451_D-1)->T:W-1(V457_D-1)) Found potential edge: Edge(451->458,w:8.0) between GTGTCTT:W9(V451_D-1) and A:W-1(V458_D-1) removing vertex A:W-1(V458_D-1) was concatenated into GTGTCTTA:W9(V451_D-1) Want to move edge Edge(458->459,w:8.0)(A:W-1(V458_D-1)->A:W-1(V459_D-1)) to (GTGTCTTA:W9(V451_D-1)->A:W-1(V459_D-1) adding edge: GTGTCTTA:W9(V451_D-1) to A:W-1(V459_D-1) removing edge Edge(458->459,w:8.0)(A:W-1(V458_D-1)->A:W-1(V459_D-1)) removing edge Edge(451->458,w:8.0)(GTGTCTTA:W9(V451_D-1)->A:W-1(V458_D-1)) Found potential edge: Edge(451->459,w:8.0) between GTGTCTTA:W9(V451_D-1) and A:W-1(V459_D-1) removing vertex A:W-1(V459_D-1) was concatenated into GTGTCTTAA:W9(V451_D-1) Want to move edge Edge(459->460,w:8.0)(A:W-1(V459_D-1)->C:W-1(V460_D-1)) to (GTGTCTTAA:W9(V451_D-1)->C:W-1(V460_D-1) adding edge: GTGTCTTAA:W9(V451_D-1) to C:W-1(V460_D-1) removing edge Edge(459->460,w:8.0)(A:W-1(V459_D-1)->C:W-1(V460_D-1)) removing edge Edge(451->459,w:8.0)(GTGTCTTAA:W9(V451_D-1)->A:W-1(V459_D-1)) Found potential edge: Edge(451->460,w:8.0) between GTGTCTTAA:W9(V451_D-1) and C:W-1(V460_D-1) removing vertex C:W-1(V460_D-1) was concatenated into GTGTCTTAAC:W8(V451_D-1) Want to move edge Edge(460->461,w:8.0)(C:W-1(V460_D-1)->T:W-1(V461_D-1)) to (GTGTCTTAAC:W8(V451_D-1)->T:W-1(V461_D-1) adding edge: GTGTCTTAAC:W8(V451_D-1) to T:W-1(V461_D-1) removing edge Edge(460->461,w:8.0)(C:W-1(V460_D-1)->T:W-1(V461_D-1)) removing edge Edge(451->460,w:8.0)(GTGTCTTAAC:W8(V451_D-1)->C:W-1(V460_D-1)) Found potential edge: Edge(451->461,w:8.0) between GTGTCTTAAC:W8(V451_D-1) and T:W-1(V461_D-1) removing vertex T:W-1(V461_D-1) was concatenated into GTGTCTTAACT:W8(V451_D-1) Want to move edge Edge(461->462,w:8.0)(T:W-1(V461_D-1)->C:W-1(V462_D-1)) to (GTGTCTTAACT:W8(V451_D-1)->C:W-1(V462_D-1) adding edge: GTGTCTTAACT:W8(V451_D-1) to C:W-1(V462_D-1) removing edge Edge(461->462,w:8.0)(T:W-1(V461_D-1)->C:W-1(V462_D-1)) removing edge Edge(451->461,w:8.0)(GTGTCTTAACT:W8(V451_D-1)->T:W-1(V461_D-1)) Found potential edge: Edge(451->462,w:8.0) between GTGTCTTAACT:W8(V451_D-1) and C:W-1(V462_D-1) removing vertex C:W-1(V462_D-1) was concatenated into GTGTCTTAACTC:W8(V451_D-1) Want to move edge Edge(462->463,w:8.0)(C:W-1(V462_D-1)->A:W-1(V463_D-1)) to (GTGTCTTAACTC:W8(V451_D-1)->A:W-1(V463_D-1) adding edge: GTGTCTTAACTC:W8(V451_D-1) to A:W-1(V463_D-1) removing edge Edge(462->463,w:8.0)(C:W-1(V462_D-1)->A:W-1(V463_D-1)) removing edge Edge(451->462,w:8.0)(GTGTCTTAACTC:W8(V451_D-1)->C:W-1(V462_D-1)) Found potential edge: Edge(451->463,w:8.0) between GTGTCTTAACTC:W8(V451_D-1) and A:W-1(V463_D-1) removing vertex A:W-1(V463_D-1) was concatenated into GTGTCTTAACTCA:W8(V451_D-1) Want to move edge Edge(463->464,w:6.0)(A:W-1(V463_D-1)->G:W-1(V464_D-1)) to (GTGTCTTAACTCA:W8(V451_D-1)->G:W-1(V464_D-1) adding edge: GTGTCTTAACTCA:W8(V451_D-1) to G:W-1(V464_D-1) removing edge Edge(463->464,w:6.0)(A:W-1(V463_D-1)->G:W-1(V464_D-1)) removing edge Edge(451->463,w:8.0)(GTGTCTTAACTCA:W8(V451_D-1)->A:W-1(V463_D-1)) Found potential edge: Edge(451->464,w:6.0) between GTGTCTTAACTCA:W8(V451_D-1) and G:W-1(V464_D-1) removing vertex G:W-1(V464_D-1) was concatenated into GTGTCTTAACTCAG:W8(V451_D-1) Want to move edge Edge(464->465,w:6.0)(G:W-1(V464_D-1)->G:W-1(V465_D-1)) to (GTGTCTTAACTCAG:W8(V451_D-1)->G:W-1(V465_D-1) adding edge: GTGTCTTAACTCAG:W8(V451_D-1) to G:W-1(V465_D-1) removing edge Edge(464->465,w:6.0)(G:W-1(V464_D-1)->G:W-1(V465_D-1)) removing edge Edge(451->464,w:6.0)(GTGTCTTAACTCAG:W8(V451_D-1)->G:W-1(V464_D-1)) Found potential edge: Edge(451->465,w:6.0) between GTGTCTTAACTCAG:W8(V451_D-1) and G:W-1(V465_D-1) removing vertex G:W-1(V465_D-1) was concatenated into GTGTCTTAACTCAGG:W8(V451_D-1) Want to move edge Edge(465->466,w:4.0)(G:W-1(V465_D-1)->A:W-1(V466_D-1)) to (GTGTCTTAACTCAGG:W8(V451_D-1)->A:W-1(V466_D-1) adding edge: GTGTCTTAACTCAGG:W8(V451_D-1) to A:W-1(V466_D-1) removing edge Edge(465->466,w:4.0)(G:W-1(V465_D-1)->A:W-1(V466_D-1)) removing edge Edge(451->465,w:6.0)(GTGTCTTAACTCAGG:W8(V451_D-1)->G:W-1(V465_D-1)) Found potential edge: Edge(451->466,w:4.0) between GTGTCTTAACTCAGG:W8(V451_D-1) and A:W-1(V466_D-1) removing vertex A:W-1(V466_D-1) was concatenated into GTGTCTTAACTCAGGA:W8(V451_D-1) Want to move edge Edge(466->467,w:4.0)(A:W-1(V466_D-1)->G:W-1(V467_D-1)) to (GTGTCTTAACTCAGGA:W8(V451_D-1)->G:W-1(V467_D-1) adding edge: GTGTCTTAACTCAGGA:W8(V451_D-1) to G:W-1(V467_D-1) removing edge Edge(466->467,w:4.0)(A:W-1(V466_D-1)->G:W-1(V467_D-1)) removing edge Edge(451->466,w:4.0)(GTGTCTTAACTCAGGA:W8(V451_D-1)->A:W-1(V466_D-1)) Found potential edge: Edge(451->467,w:4.0) between GTGTCTTAACTCAGGA:W8(V451_D-1) and G:W-1(V467_D-1) removing vertex G:W-1(V467_D-1) was concatenated into GTGTCTTAACTCAGGAG:W8(V451_D-1) Want to move edge Edge(467->468,w:2.0)(G:W-1(V467_D-1)->A:W-1(V468_D-1)) to (GTGTCTTAACTCAGGAG:W8(V451_D-1)->A:W-1(V468_D-1) adding edge: GTGTCTTAACTCAGGAG:W8(V451_D-1) to A:W-1(V468_D-1) removing edge Edge(467->468,w:2.0)(G:W-1(V467_D-1)->A:W-1(V468_D-1)) removing edge Edge(451->467,w:4.0)(GTGTCTTAACTCAGGAG:W8(V451_D-1)->G:W-1(V467_D-1)) Found potential edge: Edge(451->468,w:2.0) between GTGTCTTAACTCAGGAG:W8(V451_D-1) and A:W-1(V468_D-1) removing vertex A:W-1(V468_D-1) was concatenated into GTGTCTTAACTCAGGAGA:W7(V451_D-1) Want to move edge Edge(468->469,w:2.0)(A:W-1(V468_D-1)->T:W-1(V469_D-1)) to (GTGTCTTAACTCAGGAGA:W7(V451_D-1)->T:W-1(V469_D-1) adding edge: GTGTCTTAACTCAGGAGA:W7(V451_D-1) to T:W-1(V469_D-1) removing edge Edge(468->469,w:2.0)(A:W-1(V468_D-1)->T:W-1(V469_D-1)) removing edge Edge(451->468,w:2.0)(GTGTCTTAACTCAGGAGA:W7(V451_D-1)->A:W-1(V468_D-1)) Found potential edge: Edge(451->469,w:2.0) between GTGTCTTAACTCAGGAGA:W7(V451_D-1) and T:W-1(V469_D-1) removing vertex T:W-1(V469_D-1) was concatenated into GTGTCTTAACTCAGGAGAT:W7(V451_D-1) Want to move edge Edge(469->470,w:2.0)(T:W-1(V469_D-1)->C:W-1(V470_D-1)) to (GTGTCTTAACTCAGGAGAT:W7(V451_D-1)->C:W-1(V470_D-1) adding edge: GTGTCTTAACTCAGGAGAT:W7(V451_D-1) to C:W-1(V470_D-1) removing edge Edge(469->470,w:2.0)(T:W-1(V469_D-1)->C:W-1(V470_D-1)) removing edge Edge(451->469,w:2.0)(GTGTCTTAACTCAGGAGAT:W7(V451_D-1)->T:W-1(V469_D-1)) Found potential edge: Edge(451->470,w:2.0) between GTGTCTTAACTCAGGAGAT:W7(V451_D-1) and C:W-1(V470_D-1) removing vertex C:W-1(V470_D-1) was concatenated into GTGTCTTAACTCAGGAGATC:W7(V451_D-1) Want to move edge Edge(470->471,w:2.0)(C:W-1(V470_D-1)->A:W-1(V471_D-1)) to (GTGTCTTAACTCAGGAGATC:W7(V451_D-1)->A:W-1(V471_D-1) adding edge: GTGTCTTAACTCAGGAGATC:W7(V451_D-1) to A:W-1(V471_D-1) removing edge Edge(470->471,w:2.0)(C:W-1(V470_D-1)->A:W-1(V471_D-1)) removing edge Edge(451->470,w:2.0)(GTGTCTTAACTCAGGAGATC:W7(V451_D-1)->C:W-1(V470_D-1)) Found potential edge: Edge(451->471,w:2.0) between GTGTCTTAACTCAGGAGATC:W7(V451_D-1) and A:W-1(V471_D-1) removing vertex A:W-1(V471_D-1) was concatenated into GTGTCTTAACTCAGGAGATCA:W6(V451_D-1) Want to move edge Edge(471->472,w:2.0)(A:W-1(V471_D-1)->T:W-1(V472_D-1)) to (GTGTCTTAACTCAGGAGATCA:W6(V451_D-1)->T:W-1(V472_D-1) adding edge: GTGTCTTAACTCAGGAGATCA:W6(V451_D-1) to T:W-1(V472_D-1) removing edge Edge(471->472,w:2.0)(A:W-1(V471_D-1)->T:W-1(V472_D-1)) removing edge Edge(451->471,w:2.0)(GTGTCTTAACTCAGGAGATCA:W6(V451_D-1)->A:W-1(V471_D-1)) Found potential edge: Edge(451->472,w:2.0) between GTGTCTTAACTCAGGAGATCA:W6(V451_D-1) and T:W-1(V472_D-1) removing vertex T:W-1(V472_D-1) was concatenated into GTGTCTTAACTCAGGAGATCAT:W6(V451_D-1) Want to move edge Edge(472->473,w:2.0)(T:W-1(V472_D-1)->G:W-1(V473_D-1)) to (GTGTCTTAACTCAGGAGATCAT:W6(V451_D-1)->G:W-1(V473_D-1) adding edge: GTGTCTTAACTCAGGAGATCAT:W6(V451_D-1) to G:W-1(V473_D-1) removing edge Edge(472->473,w:2.0)(T:W-1(V472_D-1)->G:W-1(V473_D-1)) removing edge Edge(451->472,w:2.0)(GTGTCTTAACTCAGGAGATCAT:W6(V451_D-1)->T:W-1(V472_D-1)) Found potential edge: Edge(451->473,w:2.0) between GTGTCTTAACTCAGGAGATCAT:W6(V451_D-1) and G:W-1(V473_D-1) removing vertex G:W-1(V473_D-1) was concatenated into GTGTCTTAACTCAGGAGATCATG:W6(V451_D-1) Want to move edge Edge(473->474,w:4.0)(G:W-1(V473_D-1)->G:W-1(V474_D-1)) to (GTGTCTTAACTCAGGAGATCATG:W6(V451_D-1)->G:W-1(V474_D-1) adding edge: GTGTCTTAACTCAGGAGATCATG:W6(V451_D-1) to G:W-1(V474_D-1) removing edge Edge(473->474,w:4.0)(G:W-1(V473_D-1)->G:W-1(V474_D-1)) removing edge Edge(451->473,w:2.0)(GTGTCTTAACTCAGGAGATCATG:W6(V451_D-1)->G:W-1(V473_D-1)) Found potential edge: Edge(451->474,w:4.0) between GTGTCTTAACTCAGGAGATCATG:W6(V451_D-1) and G:W-1(V474_D-1) removing vertex G:W-1(V474_D-1) was concatenated into GTGTCTTAACTCAGGAGATCATGG:W6(V451_D-1) Want to move edge Edge(474->475,w:2.0)(G:W-1(V474_D-1)->T:W-1(V475_D-1)) to (GTGTCTTAACTCAGGAGATCATGG:W6(V451_D-1)->T:W-1(V475_D-1) adding edge: GTGTCTTAACTCAGGAGATCATGG:W6(V451_D-1) to T:W-1(V475_D-1) removing edge Edge(474->475,w:2.0)(G:W-1(V474_D-1)->T:W-1(V475_D-1)) removing edge Edge(451->474,w:4.0)(GTGTCTTAACTCAGGAGATCATGG:W6(V451_D-1)->G:W-1(V474_D-1)) Found potential edge: Edge(451->475,w:2.0) between GTGTCTTAACTCAGGAGATCATGG:W6(V451_D-1) and T:W-1(V475_D-1) removing vertex T:W-1(V475_D-1) was concatenated into GTGTCTTAACTCAGGAGATCATGGT:W6(V451_D-1) Want to move edge Edge(475->476,w:2.0)(T:W-1(V475_D-1)->A:W-1(V476_D-1)) to (GTGTCTTAACTCAGGAGATCATGGT:W6(V451_D-1)->A:W-1(V476_D-1) adding edge: GTGTCTTAACTCAGGAGATCATGGT:W6(V451_D-1) to A:W-1(V476_D-1) removing edge Edge(475->476,w:2.0)(T:W-1(V475_D-1)->A:W-1(V476_D-1)) removing edge Edge(451->475,w:2.0)(GTGTCTTAACTCAGGAGATCATGGT:W6(V451_D-1)->T:W-1(V475_D-1)) Found potential edge: Edge(451->476,w:2.0) between GTGTCTTAACTCAGGAGATCATGGT:W6(V451_D-1) and A:W-1(V476_D-1) removing vertex A:W-1(V476_D-1) was concatenated into GTGTCTTAACTCAGGAGATCATGGTA:W6(V451_D-1) Want to move edge Edge(476->477,w:2.0)(A:W-1(V476_D-1)->G:W-1(V477_D-1)) to (GTGTCTTAACTCAGGAGATCATGGTA:W6(V451_D-1)->G:W-1(V477_D-1) adding edge: GTGTCTTAACTCAGGAGATCATGGTA:W6(V451_D-1) to G:W-1(V477_D-1) removing edge Edge(476->477,w:2.0)(A:W-1(V476_D-1)->G:W-1(V477_D-1)) removing edge Edge(451->476,w:2.0)(GTGTCTTAACTCAGGAGATCATGGTA:W6(V451_D-1)->A:W-1(V476_D-1)) Found potential edge: Edge(451->477,w:2.0) between GTGTCTTAACTCAGGAGATCATGGTA:W6(V451_D-1) and G:W-1(V477_D-1) removing vertex G:W-1(V477_D-1) was concatenated into GTGTCTTAACTCAGGAGATCATGGTAG:W5(V451_D-1) Want to move edge Edge(477->478,w:2.0)(G:W-1(V477_D-1)->G:W-1(V478_D-1)) to (GTGTCTTAACTCAGGAGATCATGGTAG:W5(V451_D-1)->G:W-1(V478_D-1) adding edge: GTGTCTTAACTCAGGAGATCATGGTAG:W5(V451_D-1) to G:W-1(V478_D-1) removing edge Edge(477->478,w:2.0)(G:W-1(V477_D-1)->G:W-1(V478_D-1)) removing edge Edge(451->477,w:2.0)(GTGTCTTAACTCAGGAGATCATGGTAG:W5(V451_D-1)->G:W-1(V477_D-1)) Found potential edge: Edge(451->478,w:2.0) between GTGTCTTAACTCAGGAGATCATGGTAG:W5(V451_D-1) and G:W-1(V478_D-1) removing vertex G:W-1(V478_D-1) was concatenated into GTGTCTTAACTCAGGAGATCATGGTAGG:W5(V451_D-1) Want to move edge Edge(478->479,w:2.0)(G:W-1(V478_D-1)->G:W-1(V479_D-1)) to (GTGTCTTAACTCAGGAGATCATGGTAGG:W5(V451_D-1)->G:W-1(V479_D-1) adding edge: GTGTCTTAACTCAGGAGATCATGGTAGG:W5(V451_D-1) to G:W-1(V479_D-1) removing edge Edge(478->479,w:2.0)(G:W-1(V478_D-1)->G:W-1(V479_D-1)) removing edge Edge(451->478,w:2.0)(GTGTCTTAACTCAGGAGATCATGGTAGG:W5(V451_D-1)->G:W-1(V478_D-1)) Found potential edge: Edge(451->479,w:2.0) between GTGTCTTAACTCAGGAGATCATGGTAGG:W5(V451_D-1) and G:W-1(V479_D-1) removing vertex G:W-1(V479_D-1) was concatenated into GTGTCTTAACTCAGGAGATCATGGTAGGG:W5(V451_D-1) Want to move edge Edge(479->480,w:2.0)(G:W-1(V479_D-1)->A:W-1(V480_D-1)) to (GTGTCTTAACTCAGGAGATCATGGTAGGG:W5(V451_D-1)->A:W-1(V480_D-1) adding edge: GTGTCTTAACTCAGGAGATCATGGTAGGG:W5(V451_D-1) to A:W-1(V480_D-1) removing edge Edge(479->480,w:2.0)(G:W-1(V479_D-1)->A:W-1(V480_D-1)) removing edge Edge(451->479,w:2.0)(GTGTCTTAACTCAGGAGATCATGGTAGGG:W5(V451_D-1)->G:W-1(V479_D-1)) Found potential edge: Edge(451->480,w:2.0) between GTGTCTTAACTCAGGAGATCATGGTAGGG:W5(V451_D-1) and A:W-1(V480_D-1) removing vertex A:W-1(V480_D-1) was concatenated into GTGTCTTAACTCAGGAGATCATGGTAGGGA:W5(V451_D-1) Want to move edge Edge(480->481,w:2.0)(A:W-1(V480_D-1)->A:W-1(V481_D-1)) to (GTGTCTTAACTCAGGAGATCATGGTAGGGA:W5(V451_D-1)->A:W-1(V481_D-1) adding edge: GTGTCTTAACTCAGGAGATCATGGTAGGGA:W5(V451_D-1) to A:W-1(V481_D-1) removing edge Edge(480->481,w:2.0)(A:W-1(V480_D-1)->A:W-1(V481_D-1)) removing edge Edge(451->480,w:2.0)(GTGTCTTAACTCAGGAGATCATGGTAGGGA:W5(V451_D-1)->A:W-1(V480_D-1)) Found potential edge: Edge(451->481,w:2.0) between GTGTCTTAACTCAGGAGATCATGGTAGGGA:W5(V451_D-1) and A:W-1(V481_D-1) removing vertex A:W-1(V481_D-1) was concatenated into GTGTCTTAAC...TGGTAGGGAA:W5(V451_D-1) Want to move edge Edge(481->482,w:2.0)(A:W-1(V481_D-1)->G:W-1(V482_D-1)) to (GTGTCTTAAC...TGGTAGGGAA:W5(V451_D-1)->G:W-1(V482_D-1) adding edge: GTGTCTTAAC...TGGTAGGGAA:W5(V451_D-1) to G:W-1(V482_D-1) removing edge Edge(481->482,w:2.0)(A:W-1(V481_D-1)->G:W-1(V482_D-1)) removing edge Edge(451->481,w:2.0)(GTGTCTTAAC...TGGTAGGGAA:W5(V451_D-1)->A:W-1(V481_D-1)) Found potential edge: Edge(451->482,w:2.0) between GTGTCTTAAC...TGGTAGGGAA:W5(V451_D-1) and G:W-1(V482_D-1) removing vertex G:W-1(V482_D-1) was concatenated into GTGTCTTAAC...GGTAGGGAAG:W5(V451_D-1) Want to move edge Edge(482->483,w:2.0)(G:W-1(V482_D-1)->G:W-1(V483_D-1)) to (GTGTCTTAAC...GGTAGGGAAG:W5(V451_D-1)->G:W-1(V483_D-1) adding edge: GTGTCTTAAC...GGTAGGGAAG:W5(V451_D-1) to G:W-1(V483_D-1) removing edge Edge(482->483,w:2.0)(G:W-1(V482_D-1)->G:W-1(V483_D-1)) removing edge Edge(451->482,w:2.0)(GTGTCTTAAC...GGTAGGGAAG:W5(V451_D-1)->G:W-1(V482_D-1)) Found potential edge: Edge(451->483,w:2.0) between GTGTCTTAAC...GGTAGGGAAG:W5(V451_D-1) and G:W-1(V483_D-1) removing vertex G:W-1(V483_D-1) was concatenated into GTGTCTTAAC...GTAGGGAAGG:W5(V451_D-1) Want to move edge Edge(483->484,w:2.0)(G:W-1(V483_D-1)->G:W-1(V484_D-1)) to (GTGTCTTAAC...GTAGGGAAGG:W5(V451_D-1)->G:W-1(V484_D-1) adding edge: GTGTCTTAAC...GTAGGGAAGG:W5(V451_D-1) to G:W-1(V484_D-1) removing edge Edge(483->484,w:2.0)(G:W-1(V483_D-1)->G:W-1(V484_D-1)) removing edge Edge(451->483,w:2.0)(GTGTCTTAAC...GTAGGGAAGG:W5(V451_D-1)->G:W-1(V483_D-1)) Found potential edge: Edge(451->484,w:2.0) between GTGTCTTAAC...GTAGGGAAGG:W5(V451_D-1) and G:W-1(V484_D-1) removing vertex G:W-1(V484_D-1) was concatenated into GTGTCTTAAC...TAGGGAAGGG:W5(V451_D-1) Want to move edge Edge(484->485,w:2.0)(G:W-1(V484_D-1)->G:W-1(V485_D-1)) to (GTGTCTTAAC...TAGGGAAGGG:W5(V451_D-1)->G:W-1(V485_D-1) adding edge: GTGTCTTAAC...TAGGGAAGGG:W5(V451_D-1) to G:W-1(V485_D-1) removing edge Edge(484->485,w:2.0)(G:W-1(V484_D-1)->G:W-1(V485_D-1)) removing edge Edge(451->484,w:2.0)(GTGTCTTAAC...TAGGGAAGGG:W5(V451_D-1)->G:W-1(V484_D-1)) Found potential edge: Edge(451->485,w:2.0) between GTGTCTTAAC...TAGGGAAGGG:W5(V451_D-1) and G:W-1(V485_D-1) removing vertex G:W-1(V485_D-1) was concatenated into GTGTCTTAAC...AGGGAAGGGG:W5(V451_D-1) Want to move edge Edge(485->486,w:4.0)(G:W-1(V485_D-1)->T:W-1(V486_D-1)) to (GTGTCTTAAC...AGGGAAGGGG:W5(V451_D-1)->T:W-1(V486_D-1) adding edge: GTGTCTTAAC...AGGGAAGGGG:W5(V451_D-1) to T:W-1(V486_D-1) removing edge Edge(485->486,w:4.0)(G:W-1(V485_D-1)->T:W-1(V486_D-1)) removing edge Edge(451->485,w:2.0)(GTGTCTTAAC...AGGGAAGGGG:W5(V451_D-1)->G:W-1(V485_D-1)) Found potential edge: Edge(451->486,w:4.0) between GTGTCTTAAC...AGGGAAGGGG:W5(V451_D-1) and T:W-1(V486_D-1) removing vertex T:W-1(V486_D-1) was concatenated into GTGTCTTAAC...GGGAAGGGGT:W5(V451_D-1) Want to move edge Edge(486->487,w:4.0)(T:W-1(V486_D-1)->C:W-1(V487_D-1)) to (GTGTCTTAAC...GGGAAGGGGT:W5(V451_D-1)->C:W-1(V487_D-1) adding edge: GTGTCTTAAC...GGGAAGGGGT:W5(V451_D-1) to C:W-1(V487_D-1) removing edge Edge(486->487,w:4.0)(T:W-1(V486_D-1)->C:W-1(V487_D-1)) removing edge Edge(451->486,w:4.0)(GTGTCTTAAC...GGGAAGGGGT:W5(V451_D-1)->T:W-1(V486_D-1)) Found potential edge: Edge(451->487,w:4.0) between GTGTCTTAAC...GGGAAGGGGT:W5(V451_D-1) and C:W-1(V487_D-1) removing vertex C:W-1(V487_D-1) was concatenated into GTGTCTTAAC...GGAAGGGGTC:W5(V451_D-1) Want to move edge Edge(487->488,w:4.0)(C:W-1(V487_D-1)->A:W-1(V488_D-1)) to (GTGTCTTAAC...GGAAGGGGTC:W5(V451_D-1)->A:W-1(V488_D-1) adding edge: GTGTCTTAAC...GGAAGGGGTC:W5(V451_D-1) to A:W-1(V488_D-1) removing edge Edge(487->488,w:4.0)(C:W-1(V487_D-1)->A:W-1(V488_D-1)) removing edge Edge(451->487,w:4.0)(GTGTCTTAAC...GGAAGGGGTC:W5(V451_D-1)->C:W-1(V487_D-1)) Found potential edge: Edge(451->488,w:4.0) between GTGTCTTAAC...GGAAGGGGTC:W5(V451_D-1) and A:W-1(V488_D-1) removing vertex A:W-1(V488_D-1) was concatenated into GTGTCTTAAC...GAAGGGGTCA:W5(V451_D-1) Want to move edge Edge(488->489,w:4.0)(A:W-1(V488_D-1)->G:W-1(V489_D-1)) to (GTGTCTTAAC...GAAGGGGTCA:W5(V451_D-1)->G:W-1(V489_D-1) adding edge: GTGTCTTAAC...GAAGGGGTCA:W5(V451_D-1) to G:W-1(V489_D-1) removing edge Edge(488->489,w:4.0)(A:W-1(V488_D-1)->G:W-1(V489_D-1)) removing edge Edge(451->488,w:4.0)(GTGTCTTAAC...GAAGGGGTCA:W5(V451_D-1)->A:W-1(V488_D-1)) Found potential edge: Edge(451->489,w:4.0) between GTGTCTTAAC...GAAGGGGTCA:W5(V451_D-1) and G:W-1(V489_D-1) removing vertex G:W-1(V489_D-1) was concatenated into GTGTCTTAAC...AAGGGGTCAG:W5(V451_D-1) Want to move edge Edge(489->490,w:4.0)(G:W-1(V489_D-1)->G:W-1(V490_D-1)) to (GTGTCTTAAC...AAGGGGTCAG:W5(V451_D-1)->G:W-1(V490_D-1) adding edge: GTGTCTTAAC...AAGGGGTCAG:W5(V451_D-1) to G:W-1(V490_D-1) removing edge Edge(489->490,w:4.0)(G:W-1(V489_D-1)->G:W-1(V490_D-1)) removing edge Edge(451->489,w:4.0)(GTGTCTTAAC...AAGGGGTCAG:W5(V451_D-1)->G:W-1(V489_D-1)) Found potential edge: Edge(451->490,w:4.0) between GTGTCTTAAC...AAGGGGTCAG:W5(V451_D-1) and G:W-1(V490_D-1) removing vertex G:W-1(V490_D-1) was concatenated into GTGTCTTAAC...AGGGGTCAGG:W5(V451_D-1) Want to move edge Edge(490->491,w:4.0)(G:W-1(V490_D-1)->C:W-1(V491_D-1)) to (GTGTCTTAAC...AGGGGTCAGG:W5(V451_D-1)->C:W-1(V491_D-1) adding edge: GTGTCTTAAC...AGGGGTCAGG:W5(V451_D-1) to C:W-1(V491_D-1) removing edge Edge(490->491,w:4.0)(G:W-1(V490_D-1)->C:W-1(V491_D-1)) removing edge Edge(451->490,w:4.0)(GTGTCTTAAC...AGGGGTCAGG:W5(V451_D-1)->G:W-1(V490_D-1)) Found potential edge: Edge(451->491,w:4.0) between GTGTCTTAAC...AGGGGTCAGG:W5(V451_D-1) and C:W-1(V491_D-1) removing vertex C:W-1(V491_D-1) was concatenated into GTGTCTTAAC...GGGGTCAGGC:W5(V451_D-1) Want to move edge Edge(491->492,w:4.0)(C:W-1(V491_D-1)->C:W-1(V492_D-1)) to (GTGTCTTAAC...GGGGTCAGGC:W5(V451_D-1)->C:W-1(V492_D-1) adding edge: GTGTCTTAAC...GGGGTCAGGC:W5(V451_D-1) to C:W-1(V492_D-1) removing edge Edge(491->492,w:4.0)(C:W-1(V491_D-1)->C:W-1(V492_D-1)) removing edge Edge(451->491,w:4.0)(GTGTCTTAAC...GGGGTCAGGC:W5(V451_D-1)->C:W-1(V491_D-1)) Found potential edge: Edge(451->492,w:4.0) between GTGTCTTAAC...GGGGTCAGGC:W5(V451_D-1) and C:W-1(V492_D-1) removing vertex C:W-1(V492_D-1) was concatenated into GTGTCTTAAC...GGGTCAGGCC:W5(V451_D-1) Want to move edge Edge(492->493,w:4.0)(C:W-1(V492_D-1)->A:W-1(V493_D-1)) to (GTGTCTTAAC...GGGTCAGGCC:W5(V451_D-1)->A:W-1(V493_D-1) adding edge: GTGTCTTAAC...GGGTCAGGCC:W5(V451_D-1) to A:W-1(V493_D-1) removing edge Edge(492->493,w:4.0)(C:W-1(V492_D-1)->A:W-1(V493_D-1)) removing edge Edge(451->492,w:4.0)(GTGTCTTAAC...GGGTCAGGCC:W5(V451_D-1)->C:W-1(V492_D-1)) Found potential edge: Edge(451->493,w:4.0) between GTGTCTTAAC...GGGTCAGGCC:W5(V451_D-1) and A:W-1(V493_D-1) removing vertex A:W-1(V493_D-1) was concatenated into GTGTCTTAAC...GGTCAGGCCA:W5(V451_D-1) Want to move edge Edge(493->494,w:4.0)(A:W-1(V493_D-1)->C:W-1(V494_D-1)) to (GTGTCTTAAC...GGTCAGGCCA:W5(V451_D-1)->C:W-1(V494_D-1) adding edge: GTGTCTTAAC...GGTCAGGCCA:W5(V451_D-1) to C:W-1(V494_D-1) removing edge Edge(493->494,w:4.0)(A:W-1(V493_D-1)->C:W-1(V494_D-1)) removing edge Edge(451->493,w:4.0)(GTGTCTTAAC...GGTCAGGCCA:W5(V451_D-1)->A:W-1(V493_D-1)) Found potential edge: Edge(451->494,w:4.0) between GTGTCTTAAC...GGTCAGGCCA:W5(V451_D-1) and C:W-1(V494_D-1) removing vertex C:W-1(V494_D-1) was concatenated into GTGTCTTAAC...GTCAGGCCAC:W5(V451_D-1) Want to move edge Edge(494->495,w:4.0)(C:W-1(V494_D-1)->T:W-1(V495_D-1)) to (GTGTCTTAAC...GTCAGGCCAC:W5(V451_D-1)->T:W-1(V495_D-1) adding edge: GTGTCTTAAC...GTCAGGCCAC:W5(V451_D-1) to T:W-1(V495_D-1) removing edge Edge(494->495,w:4.0)(C:W-1(V494_D-1)->T:W-1(V495_D-1)) removing edge Edge(451->494,w:4.0)(GTGTCTTAAC...GTCAGGCCAC:W5(V451_D-1)->C:W-1(V494_D-1)) Found potential edge: Edge(451->495,w:4.0) between GTGTCTTAAC...GTCAGGCCAC:W5(V451_D-1) and T:W-1(V495_D-1) removing vertex T:W-1(V495_D-1) was concatenated into GTGTCTTAAC...TCAGGCCACT:W5(V451_D-1) Want to move edge Edge(495->496,w:4.0)(T:W-1(V495_D-1)->T:W-1(V496_D-1)) to (GTGTCTTAAC...TCAGGCCACT:W5(V451_D-1)->T:W-1(V496_D-1) adding edge: GTGTCTTAAC...TCAGGCCACT:W5(V451_D-1) to T:W-1(V496_D-1) removing edge Edge(495->496,w:4.0)(T:W-1(V495_D-1)->T:W-1(V496_D-1)) removing edge Edge(451->495,w:4.0)(GTGTCTTAAC...TCAGGCCACT:W5(V451_D-1)->T:W-1(V495_D-1)) Found potential edge: Edge(451->496,w:4.0) between GTGTCTTAAC...TCAGGCCACT:W5(V451_D-1) and T:W-1(V496_D-1) removing vertex T:W-1(V496_D-1) was concatenated into GTGTCTTAAC...CAGGCCACTT:W4(V451_D-1) Want to move edge Edge(496->497,w:4.0)(T:W-1(V496_D-1)->C:W-1(V497_D-1)) to (GTGTCTTAAC...CAGGCCACTT:W4(V451_D-1)->C:W-1(V497_D-1) adding edge: GTGTCTTAAC...CAGGCCACTT:W4(V451_D-1) to C:W-1(V497_D-1) removing edge Edge(496->497,w:4.0)(T:W-1(V496_D-1)->C:W-1(V497_D-1)) removing edge Edge(451->496,w:4.0)(GTGTCTTAAC...CAGGCCACTT:W4(V451_D-1)->T:W-1(V496_D-1)) Found potential edge: Edge(451->497,w:4.0) between GTGTCTTAAC...CAGGCCACTT:W4(V451_D-1) and C:W-1(V497_D-1) removing vertex C:W-1(V497_D-1) was concatenated into GTGTCTTAAC...AGGCCACTTC:W4(V451_D-1) Want to move edge Edge(497->498,w:4.0)(C:W-1(V497_D-1)->A:W-1(V498_D-1)) to (GTGTCTTAAC...AGGCCACTTC:W4(V451_D-1)->A:W-1(V498_D-1) adding edge: GTGTCTTAAC...AGGCCACTTC:W4(V451_D-1) to A:W-1(V498_D-1) removing edge Edge(497->498,w:4.0)(C:W-1(V497_D-1)->A:W-1(V498_D-1)) removing edge Edge(451->497,w:4.0)(GTGTCTTAAC...AGGCCACTTC:W4(V451_D-1)->C:W-1(V497_D-1)) Found potential edge: Edge(451->498,w:4.0) between GTGTCTTAAC...AGGCCACTTC:W4(V451_D-1) and A:W-1(V498_D-1) removing vertex A:W-1(V498_D-1) was concatenated into GTGTCTTAAC...GGCCACTTCA:W4(V451_D-1) Want to move edge Edge(498->499,w:4.0)(A:W-1(V498_D-1)->C:W-1(V499_D-1)) to (GTGTCTTAAC...GGCCACTTCA:W4(V451_D-1)->C:W-1(V499_D-1) adding edge: GTGTCTTAAC...GGCCACTTCA:W4(V451_D-1) to C:W-1(V499_D-1) removing edge Edge(498->499,w:4.0)(A:W-1(V498_D-1)->C:W-1(V499_D-1)) removing edge Edge(451->498,w:4.0)(GTGTCTTAAC...GGCCACTTCA:W4(V451_D-1)->A:W-1(V498_D-1)) Found potential edge: Edge(451->499,w:4.0) between GTGTCTTAAC...GGCCACTTCA:W4(V451_D-1) and C:W-1(V499_D-1) removing vertex C:W-1(V499_D-1) was concatenated into GTGTCTTAAC...GCCACTTCAC:W4(V451_D-1) Want to move edge Edge(499->500,w:4.0)(C:W-1(V499_D-1)->A:W-1(V500_D-1)) to (GTGTCTTAAC...GCCACTTCAC:W4(V451_D-1)->A:W-1(V500_D-1) adding edge: GTGTCTTAAC...GCCACTTCAC:W4(V451_D-1) to A:W-1(V500_D-1) removing edge Edge(499->500,w:4.0)(C:W-1(V499_D-1)->A:W-1(V500_D-1)) removing edge Edge(451->499,w:4.0)(GTGTCTTAAC...GCCACTTCAC:W4(V451_D-1)->C:W-1(V499_D-1)) Found potential edge: Edge(451->500,w:4.0) between GTGTCTTAAC...GCCACTTCAC:W4(V451_D-1) and A:W-1(V500_D-1) removing vertex A:W-1(V500_D-1) was concatenated into GTGTCTTAAC...CCACTTCACA:W4(V451_D-1) Want to move edge Edge(500->501,w:4.0)(A:W-1(V500_D-1)->A:W-1(V501_D-1)) to (GTGTCTTAAC...CCACTTCACA:W4(V451_D-1)->A:W-1(V501_D-1) adding edge: GTGTCTTAAC...CCACTTCACA:W4(V451_D-1) to A:W-1(V501_D-1) removing edge Edge(500->501,w:4.0)(A:W-1(V500_D-1)->A:W-1(V501_D-1)) removing edge Edge(451->500,w:4.0)(GTGTCTTAAC...CCACTTCACA:W4(V451_D-1)->A:W-1(V500_D-1)) Found potential edge: Edge(451->501,w:4.0) between GTGTCTTAAC...CCACTTCACA:W4(V451_D-1) and A:W-1(V501_D-1) removing vertex A:W-1(V501_D-1) was concatenated into GTGTCTTAAC...CACTTCACAA:W4(V451_D-1) Want to move edge Edge(501->502,w:4.0)(A:W-1(V501_D-1)->G:W-1(V502_D-1)) to (GTGTCTTAAC...CACTTCACAA:W4(V451_D-1)->G:W-1(V502_D-1) adding edge: GTGTCTTAAC...CACTTCACAA:W4(V451_D-1) to G:W-1(V502_D-1) removing edge Edge(501->502,w:4.0)(A:W-1(V501_D-1)->G:W-1(V502_D-1)) removing edge Edge(451->501,w:4.0)(GTGTCTTAAC...CACTTCACAA:W4(V451_D-1)->A:W-1(V501_D-1)) Found potential edge: Edge(451->502,w:4.0) between GTGTCTTAAC...CACTTCACAA:W4(V451_D-1) and G:W-1(V502_D-1) removing vertex G:W-1(V502_D-1) was concatenated into GTGTCTTAAC...ACTTCACAAG:W4(V451_D-1) Want to move edge Edge(502->503,w:6.0)(G:W-1(V502_D-1)->G:W-1(V503_D-1)) to (GTGTCTTAAC...ACTTCACAAG:W4(V451_D-1)->G:W-1(V503_D-1) adding edge: GTGTCTTAAC...ACTTCACAAG:W4(V451_D-1) to G:W-1(V503_D-1) removing edge Edge(502->503,w:6.0)(G:W-1(V502_D-1)->G:W-1(V503_D-1)) removing edge Edge(451->502,w:4.0)(GTGTCTTAAC...ACTTCACAAG:W4(V451_D-1)->G:W-1(V502_D-1)) Found potential edge: Edge(451->503,w:6.0) between GTGTCTTAAC...ACTTCACAAG:W4(V451_D-1) and G:W-1(V503_D-1) removing vertex G:W-1(V503_D-1) was concatenated into GTGTCTTAAC...CTTCACAAGG:W4(V451_D-1) Want to move edge Edge(503->504,w:6.0)(G:W-1(V503_D-1)->A:W-1(V504_D-1)) to (GTGTCTTAAC...CTTCACAAGG:W4(V451_D-1)->A:W-1(V504_D-1) adding edge: GTGTCTTAAC...CTTCACAAGG:W4(V451_D-1) to A:W-1(V504_D-1) removing edge Edge(503->504,w:6.0)(G:W-1(V503_D-1)->A:W-1(V504_D-1)) removing edge Edge(451->503,w:6.0)(GTGTCTTAAC...CTTCACAAGG:W4(V451_D-1)->G:W-1(V503_D-1)) Found potential edge: Edge(451->504,w:6.0) between GTGTCTTAAC...CTTCACAAGG:W4(V451_D-1) and A:W-1(V504_D-1) removing vertex A:W-1(V504_D-1) was concatenated into GTGTCTTAAC...TTCACAAGGA:W4(V451_D-1) Want to move edge Edge(504->505,w:8.0)(A:W-1(V504_D-1)->G:W-1(V505_D-1)) to (GTGTCTTAAC...TTCACAAGGA:W4(V451_D-1)->G:W-1(V505_D-1) adding edge: GTGTCTTAAC...TTCACAAGGA:W4(V451_D-1) to G:W-1(V505_D-1) removing edge Edge(504->505,w:8.0)(A:W-1(V504_D-1)->G:W-1(V505_D-1)) removing edge Edge(451->504,w:6.0)(GTGTCTTAAC...TTCACAAGGA:W4(V451_D-1)->A:W-1(V504_D-1)) Found potential edge: Edge(451->505,w:8.0) between GTGTCTTAAC...TTCACAAGGA:W4(V451_D-1) and G:W-1(V505_D-1) removing vertex G:W-1(V505_D-1) was concatenated into GTGTCTTAAC...TCACAAGGAG:W5(V451_D-1) Want to move edge Edge(505->506,w:8.0)(G:W-1(V505_D-1)->C:W-1(V506_D-1)) to (GTGTCTTAAC...TCACAAGGAG:W5(V451_D-1)->C:W-1(V506_D-1) adding edge: GTGTCTTAAC...TCACAAGGAG:W5(V451_D-1) to C:W-1(V506_D-1) removing edge Edge(505->506,w:8.0)(G:W-1(V505_D-1)->C:W-1(V506_D-1)) removing edge Edge(451->505,w:8.0)(GTGTCTTAAC...TCACAAGGAG:W5(V451_D-1)->G:W-1(V505_D-1)) Found potential edge: Edge(451->506,w:8.0) between GTGTCTTAAC...TCACAAGGAG:W5(V451_D-1) and C:W-1(V506_D-1) removing vertex C:W-1(V506_D-1) was concatenated into GTGTCTTAAC...CACAAGGAGC:W5(V451_D-1) Want to move edge Edge(506->507,w:8.0)(C:W-1(V506_D-1)->A:W-1(V507_D-1)) to (GTGTCTTAAC...CACAAGGAGC:W5(V451_D-1)->A:W-1(V507_D-1) adding edge: GTGTCTTAAC...CACAAGGAGC:W5(V451_D-1) to A:W-1(V507_D-1) removing edge Edge(506->507,w:8.0)(C:W-1(V506_D-1)->A:W-1(V507_D-1)) removing edge Edge(451->506,w:8.0)(GTGTCTTAAC...CACAAGGAGC:W5(V451_D-1)->C:W-1(V506_D-1)) Found potential edge: Edge(451->507,w:8.0) between GTGTCTTAAC...CACAAGGAGC:W5(V451_D-1) and A:W-1(V507_D-1) removing vertex A:W-1(V507_D-1) was concatenated into GTGTCTTAAC...ACAAGGAGCA:W5(V451_D-1) Want to move edge Edge(507->508,w:10.0)(A:W-1(V507_D-1)->G:W-1(V508_D-1)) to (GTGTCTTAAC...ACAAGGAGCA:W5(V451_D-1)->G:W-1(V508_D-1) adding edge: GTGTCTTAAC...ACAAGGAGCA:W5(V451_D-1) to G:W-1(V508_D-1) removing edge Edge(507->508,w:10.0)(A:W-1(V507_D-1)->G:W-1(V508_D-1)) removing edge Edge(451->507,w:8.0)(GTGTCTTAAC...ACAAGGAGCA:W5(V451_D-1)->A:W-1(V507_D-1)) Found potential edge: Edge(451->508,w:10.0) between GTGTCTTAAC...ACAAGGAGCA:W5(V451_D-1) and G:W-1(V508_D-1) removing vertex G:W-1(V508_D-1) was concatenated into GTGTCTTAAC...CAAGGAGCAG:W5(V451_D-1) Want to move edge Edge(508->509,w:10.0)(G:W-1(V508_D-1)->A:W-1(V509_D-1)) to (GTGTCTTAAC...CAAGGAGCAG:W5(V451_D-1)->A:W-1(V509_D-1) adding edge: GTGTCTTAAC...CAAGGAGCAG:W5(V451_D-1) to A:W-1(V509_D-1) removing edge Edge(508->509,w:10.0)(G:W-1(V508_D-1)->A:W-1(V509_D-1)) removing edge Edge(451->508,w:10.0)(GTGTCTTAAC...CAAGGAGCAG:W5(V451_D-1)->G:W-1(V508_D-1)) Found potential edge: Edge(451->509,w:10.0) between GTGTCTTAAC...CAAGGAGCAG:W5(V451_D-1) and A:W-1(V509_D-1) removing vertex A:W-1(V509_D-1) was concatenated into GTGTCTTAAC...AAGGAGCAGA:W5(V451_D-1) Want to move edge Edge(509->510,w:10.0)(A:W-1(V509_D-1)->G:W-1(V510_D-1)) to (GTGTCTTAAC...AAGGAGCAGA:W5(V451_D-1)->G:W-1(V510_D-1) adding edge: GTGTCTTAAC...AAGGAGCAGA:W5(V451_D-1) to G:W-1(V510_D-1) removing edge Edge(509->510,w:10.0)(A:W-1(V509_D-1)->G:W-1(V510_D-1)) removing edge Edge(451->509,w:10.0)(GTGTCTTAAC...AAGGAGCAGA:W5(V451_D-1)->A:W-1(V509_D-1)) Found potential edge: Edge(451->510,w:10.0) between GTGTCTTAAC...AAGGAGCAGA:W5(V451_D-1) and G:W-1(V510_D-1) removing vertex G:W-1(V510_D-1) was concatenated into GTGTCTTAAC...AGGAGCAGAG:W5(V451_D-1) Want to move edge Edge(510->511,w:10.0)(G:W-1(V510_D-1)->T:W-1(V511_D-1)) to (GTGTCTTAAC...AGGAGCAGAG:W5(V451_D-1)->T:W-1(V511_D-1) adding edge: GTGTCTTAAC...AGGAGCAGAG:W5(V451_D-1) to T:W-1(V511_D-1) removing edge Edge(510->511,w:10.0)(G:W-1(V510_D-1)->T:W-1(V511_D-1)) removing edge Edge(451->510,w:10.0)(GTGTCTTAAC...AGGAGCAGAG:W5(V451_D-1)->G:W-1(V510_D-1)) Found potential edge: Edge(451->511,w:10.0) between GTGTCTTAAC...AGGAGCAGAG:W5(V451_D-1) and T:W-1(V511_D-1) removing vertex T:W-1(V511_D-1) was concatenated into GTGTCTTAAC...GGAGCAGAGT:W5(V451_D-1) Want to move edge Edge(511->512,w:10.0)(T:W-1(V511_D-1)->T:W-1(V512_D-1)) to (GTGTCTTAAC...GGAGCAGAGT:W5(V451_D-1)->T:W-1(V512_D-1) adding edge: GTGTCTTAAC...GGAGCAGAGT:W5(V451_D-1) to T:W-1(V512_D-1) removing edge Edge(511->512,w:10.0)(T:W-1(V511_D-1)->T:W-1(V512_D-1)) removing edge Edge(451->511,w:10.0)(GTGTCTTAAC...GGAGCAGAGT:W5(V451_D-1)->T:W-1(V511_D-1)) Found potential edge: Edge(451->512,w:10.0) between GTGTCTTAAC...GGAGCAGAGT:W5(V451_D-1) and T:W-1(V512_D-1) removing vertex T:W-1(V512_D-1) was concatenated into GTGTCTTAAC...GAGCAGAGTT:W5(V451_D-1) Want to move edge Edge(512->513,w:10.0)(T:W-1(V512_D-1)->A:W-1(V513_D-1)) to (GTGTCTTAAC...GAGCAGAGTT:W5(V451_D-1)->A:W-1(V513_D-1) adding edge: GTGTCTTAAC...GAGCAGAGTT:W5(V451_D-1) to A:W-1(V513_D-1) removing edge Edge(512->513,w:10.0)(T:W-1(V512_D-1)->A:W-1(V513_D-1)) removing edge Edge(451->512,w:10.0)(GTGTCTTAAC...GAGCAGAGTT:W5(V451_D-1)->T:W-1(V512_D-1)) Found potential edge: Edge(451->513,w:10.0) between GTGTCTTAAC...GAGCAGAGTT:W5(V451_D-1) and A:W-1(V513_D-1) removing vertex A:W-1(V513_D-1) was concatenated into GTGTCTTAAC...AGCAGAGTTA:W5(V451_D-1) Want to move edge Edge(513->514,w:10.0)(A:W-1(V513_D-1)->G:W-1(V514_D-1)) to (GTGTCTTAAC...AGCAGAGTTA:W5(V451_D-1)->G:W-1(V514_D-1) adding edge: GTGTCTTAAC...AGCAGAGTTA:W5(V451_D-1) to G:W-1(V514_D-1) removing edge Edge(513->514,w:10.0)(A:W-1(V513_D-1)->G:W-1(V514_D-1)) removing edge Edge(451->513,w:10.0)(GTGTCTTAAC...AGCAGAGTTA:W5(V451_D-1)->A:W-1(V513_D-1)) Found potential edge: Edge(451->514,w:10.0) between GTGTCTTAAC...AGCAGAGTTA:W5(V451_D-1) and G:W-1(V514_D-1) removing vertex G:W-1(V514_D-1) was concatenated into GTGTCTTAAC...GCAGAGTTAG:W5(V451_D-1) Want to move edge Edge(514->515,w:10.0)(G:W-1(V514_D-1)->G:W-1(V515_D-1)) to (GTGTCTTAAC...GCAGAGTTAG:W5(V451_D-1)->G:W-1(V515_D-1) adding edge: GTGTCTTAAC...GCAGAGTTAG:W5(V451_D-1) to G:W-1(V515_D-1) removing edge Edge(514->515,w:10.0)(G:W-1(V514_D-1)->G:W-1(V515_D-1)) removing edge Edge(451->514,w:10.0)(GTGTCTTAAC...GCAGAGTTAG:W5(V451_D-1)->G:W-1(V514_D-1)) Found potential edge: Edge(451->515,w:10.0) between GTGTCTTAAC...GCAGAGTTAG:W5(V451_D-1) and G:W-1(V515_D-1) removing vertex G:W-1(V515_D-1) was concatenated into GTGTCTTAAC...CAGAGTTAGG:W5(V451_D-1) Want to move edge Edge(515->516,w:10.0)(G:W-1(V515_D-1)->A:W-1(V516_D-1)) to (GTGTCTTAAC...CAGAGTTAGG:W5(V451_D-1)->A:W-1(V516_D-1) adding edge: GTGTCTTAAC...CAGAGTTAGG:W5(V451_D-1) to A:W-1(V516_D-1) removing edge Edge(515->516,w:10.0)(G:W-1(V515_D-1)->A:W-1(V516_D-1)) removing edge Edge(451->515,w:10.0)(GTGTCTTAAC...CAGAGTTAGG:W5(V451_D-1)->G:W-1(V515_D-1)) Found potential edge: Edge(451->516,w:10.0) between GTGTCTTAAC...CAGAGTTAGG:W5(V451_D-1) and A:W-1(V516_D-1) removing vertex A:W-1(V516_D-1) was concatenated into GTGTCTTAAC...AGAGTTAGGA:W5(V451_D-1) Want to move edge Edge(516->517,w:10.0)(A:W-1(V516_D-1)->A:W-1(V517_D-1)) to (GTGTCTTAAC...AGAGTTAGGA:W5(V451_D-1)->A:W-1(V517_D-1) adding edge: GTGTCTTAAC...AGAGTTAGGA:W5(V451_D-1) to A:W-1(V517_D-1) removing edge Edge(516->517,w:10.0)(A:W-1(V516_D-1)->A:W-1(V517_D-1)) removing edge Edge(451->516,w:10.0)(GTGTCTTAAC...AGAGTTAGGA:W5(V451_D-1)->A:W-1(V516_D-1)) Found potential edge: Edge(451->517,w:10.0) between GTGTCTTAAC...AGAGTTAGGA:W5(V451_D-1) and A:W-1(V517_D-1) removing vertex A:W-1(V517_D-1) was concatenated into GTGTCTTAAC...GAGTTAGGAA:W5(V451_D-1) Want to move edge Edge(517->518,w:10.0)(A:W-1(V517_D-1)->G:W-1(V518_D-1)) to (GTGTCTTAAC...GAGTTAGGAA:W5(V451_D-1)->G:W-1(V518_D-1) adding edge: GTGTCTTAAC...GAGTTAGGAA:W5(V451_D-1) to G:W-1(V518_D-1) removing edge Edge(517->518,w:10.0)(A:W-1(V517_D-1)->G:W-1(V518_D-1)) removing edge Edge(451->517,w:10.0)(GTGTCTTAAC...GAGTTAGGAA:W5(V451_D-1)->A:W-1(V517_D-1)) Found potential edge: Edge(451->518,w:10.0) between GTGTCTTAAC...GAGTTAGGAA:W5(V451_D-1) and G:W-1(V518_D-1) removing vertex G:W-1(V518_D-1) was concatenated into GTGTCTTAAC...AGTTAGGAAG:W6(V451_D-1) Want to move edge Edge(518->519,w:10.0)(G:W-1(V518_D-1)->C:W-1(V519_D-1)) to (GTGTCTTAAC...AGTTAGGAAG:W6(V451_D-1)->C:W-1(V519_D-1) adding edge: GTGTCTTAAC...AGTTAGGAAG:W6(V451_D-1) to C:W-1(V519_D-1) removing edge Edge(518->519,w:10.0)(G:W-1(V518_D-1)->C:W-1(V519_D-1)) removing edge Edge(451->518,w:10.0)(GTGTCTTAAC...AGTTAGGAAG:W6(V451_D-1)->G:W-1(V518_D-1)) Found potential edge: Edge(451->519,w:10.0) between GTGTCTTAAC...AGTTAGGAAG:W6(V451_D-1) and C:W-1(V519_D-1) removing vertex C:W-1(V519_D-1) was concatenated into GTGTCTTAAC...GTTAGGAAGC:W6(V451_D-1) Want to move edge Edge(519->520,w:10.0)(C:W-1(V519_D-1)->T:W-1(V520_D-1)) to (GTGTCTTAAC...GTTAGGAAGC:W6(V451_D-1)->T:W-1(V520_D-1) adding edge: GTGTCTTAAC...GTTAGGAAGC:W6(V451_D-1) to T:W-1(V520_D-1) removing edge Edge(519->520,w:10.0)(C:W-1(V519_D-1)->T:W-1(V520_D-1)) removing edge Edge(451->519,w:10.0)(GTGTCTTAAC...GTTAGGAAGC:W6(V451_D-1)->C:W-1(V519_D-1)) Found potential edge: Edge(451->520,w:10.0) between GTGTCTTAAC...GTTAGGAAGC:W6(V451_D-1) and T:W-1(V520_D-1) removing vertex T:W-1(V520_D-1) was concatenated into GTGTCTTAAC...TTAGGAAGCT:W6(V451_D-1) Want to move edge Edge(520->521,w:10.0)(T:W-1(V520_D-1)->C:W-1(V521_D-1)) to (GTGTCTTAAC...TTAGGAAGCT:W6(V451_D-1)->C:W-1(V521_D-1) adding edge: GTGTCTTAAC...TTAGGAAGCT:W6(V451_D-1) to C:W-1(V521_D-1) removing edge Edge(520->521,w:10.0)(T:W-1(V520_D-1)->C:W-1(V521_D-1)) removing edge Edge(451->520,w:10.0)(GTGTCTTAAC...TTAGGAAGCT:W6(V451_D-1)->T:W-1(V520_D-1)) Found potential edge: Edge(451->521,w:10.0) between GTGTCTTAAC...TTAGGAAGCT:W6(V451_D-1) and C:W-1(V521_D-1) removing vertex C:W-1(V521_D-1) was concatenated into GTGTCTTAAC...TAGGAAGCTC:W6(V451_D-1) Want to move edge Edge(521->522,w:10.0)(C:W-1(V521_D-1)->C:W-1(V522_D-1)) to (GTGTCTTAAC...TAGGAAGCTC:W6(V451_D-1)->C:W-1(V522_D-1) adding edge: GTGTCTTAAC...TAGGAAGCTC:W6(V451_D-1) to C:W-1(V522_D-1) removing edge Edge(521->522,w:10.0)(C:W-1(V521_D-1)->C:W-1(V522_D-1)) removing edge Edge(451->521,w:10.0)(GTGTCTTAAC...TAGGAAGCTC:W6(V451_D-1)->C:W-1(V521_D-1)) Found potential edge: Edge(451->522,w:10.0) between GTGTCTTAAC...TAGGAAGCTC:W6(V451_D-1) and C:W-1(V522_D-1) removing vertex C:W-1(V522_D-1) was concatenated into GTGTCTTAAC...AGGAAGCTCC:W6(V451_D-1) Want to move edge Edge(522->523,w:10.0)(C:W-1(V522_D-1)->C:W-1(V523_D-1)) to (GTGTCTTAAC...AGGAAGCTCC:W6(V451_D-1)->C:W-1(V523_D-1) adding edge: GTGTCTTAAC...AGGAAGCTCC:W6(V451_D-1) to C:W-1(V523_D-1) removing edge Edge(522->523,w:10.0)(C:W-1(V522_D-1)->C:W-1(V523_D-1)) removing edge Edge(451->522,w:10.0)(GTGTCTTAAC...AGGAAGCTCC:W6(V451_D-1)->C:W-1(V522_D-1)) Found potential edge: Edge(451->523,w:10.0) between GTGTCTTAAC...AGGAAGCTCC:W6(V451_D-1) and C:W-1(V523_D-1) removing vertex C:W-1(V523_D-1) was concatenated into GTGTCTTAAC...GGAAGCTCCC:W6(V451_D-1) Want to move edge Edge(523->524,w:10.0)(C:W-1(V523_D-1)->T:W-1(V524_D-1)) to (GTGTCTTAAC...GGAAGCTCCC:W6(V451_D-1)->T:W-1(V524_D-1) adding edge: GTGTCTTAAC...GGAAGCTCCC:W6(V451_D-1) to T:W-1(V524_D-1) removing edge Edge(523->524,w:10.0)(C:W-1(V523_D-1)->T:W-1(V524_D-1)) removing edge Edge(451->523,w:10.0)(GTGTCTTAAC...GGAAGCTCCC:W6(V451_D-1)->C:W-1(V523_D-1)) Found potential edge: Edge(451->524,w:10.0) between GTGTCTTAAC...GGAAGCTCCC:W6(V451_D-1) and T:W-1(V524_D-1) removing vertex T:W-1(V524_D-1) was concatenated into GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) Want to move edge Edge(524->525,w:8.0)(T:W-1(V524_D-1)->G:W-1(V525_D-1)) to (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1)->G:W-1(V525_D-1) adding edge: GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) to G:W-1(V525_D-1) Want to move edge Edge(524->813,w:2.0)(T:W-1(V524_D-1)->C:W-1(V813_D-1)) to (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1)->C:W-1(V813_D-1) adding edge: GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) to C:W-1(V813_D-1) removing edge Edge(524->525,w:8.0)(T:W-1(V524_D-1)->G:W-1(V525_D-1)) removing edge Edge(524->813,w:2.0)(T:W-1(V524_D-1)->C:W-1(V813_D-1)) removing edge Edge(451->524,w:10.0)(GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1)->T:W-1(V524_D-1)) Found potential edge: Edge(525->526,w:6.0) between G:W-1(V525_D-1) and A:W-1(V526_D-1) removing vertex A:W-1(V526_D-1) was concatenated into GA:W6(V525_D-1) Want to move edge Edge(526->527,w:6.0)(A:W-1(V526_D-1)->G:W-1(V527_D-1)) to (GA:W6(V525_D-1)->G:W-1(V527_D-1) adding edge: GA:W6(V525_D-1) to G:W-1(V527_D-1) removing edge Edge(526->527,w:6.0)(A:W-1(V526_D-1)->G:W-1(V527_D-1)) removing edge Edge(525->526,w:6.0)(GA:W6(V525_D-1)->A:W-1(V526_D-1)) Found potential edge: Edge(525->527,w:6.0) between GA:W6(V525_D-1) and G:W-1(V527_D-1) removing vertex G:W-1(V527_D-1) was concatenated into GAG:W6(V525_D-1) Want to move edge Edge(527->528,w:6.0)(G:W-1(V527_D-1)->C:W-1(V528_D-1)) to (GAG:W6(V525_D-1)->C:W-1(V528_D-1) adding edge: GAG:W6(V525_D-1) to C:W-1(V528_D-1) removing edge Edge(527->528,w:6.0)(G:W-1(V527_D-1)->C:W-1(V528_D-1)) removing edge Edge(525->527,w:6.0)(GAG:W6(V525_D-1)->G:W-1(V527_D-1)) Found potential edge: Edge(525->528,w:6.0) between GAG:W6(V525_D-1) and C:W-1(V528_D-1) removing vertex C:W-1(V528_D-1) was concatenated into GAGC:W6(V525_D-1) Want to move edge Edge(528->529,w:6.0)(C:W-1(V528_D-1)->A:W-1(V529_D-1)) to (GAGC:W6(V525_D-1)->A:W-1(V529_D-1) adding edge: GAGC:W6(V525_D-1) to A:W-1(V529_D-1) removing edge Edge(528->529,w:6.0)(C:W-1(V528_D-1)->A:W-1(V529_D-1)) removing edge Edge(525->528,w:6.0)(GAGC:W6(V525_D-1)->C:W-1(V528_D-1)) Found potential edge: Edge(525->529,w:6.0) between GAGC:W6(V525_D-1) and A:W-1(V529_D-1) removing vertex A:W-1(V529_D-1) was concatenated into GAGCA:W6(V525_D-1) Want to move edge Edge(529->530,w:6.0)(A:W-1(V529_D-1)->C:W-1(V530_D-1)) to (GAGCA:W6(V525_D-1)->C:W-1(V530_D-1) adding edge: GAGCA:W6(V525_D-1) to C:W-1(V530_D-1) removing edge Edge(529->530,w:6.0)(A:W-1(V529_D-1)->C:W-1(V530_D-1)) removing edge Edge(525->529,w:6.0)(GAGCA:W6(V525_D-1)->A:W-1(V529_D-1)) Found potential edge: Edge(525->530,w:6.0) between GAGCA:W6(V525_D-1) and C:W-1(V530_D-1) removing vertex C:W-1(V530_D-1) was concatenated into GAGCAC:W6(V525_D-1) Want to move edge Edge(530->531,w:6.0)(C:W-1(V530_D-1)->T:W-1(V531_D-1)) to (GAGCAC:W6(V525_D-1)->T:W-1(V531_D-1) adding edge: GAGCAC:W6(V525_D-1) to T:W-1(V531_D-1) removing edge Edge(530->531,w:6.0)(C:W-1(V530_D-1)->T:W-1(V531_D-1)) removing edge Edge(525->530,w:6.0)(GAGCAC:W6(V525_D-1)->C:W-1(V530_D-1)) Found potential edge: Edge(525->531,w:6.0) between GAGCAC:W6(V525_D-1) and T:W-1(V531_D-1) removing vertex T:W-1(V531_D-1) was concatenated into GAGCACT:W6(V525_D-1) Want to move edge Edge(531->532,w:6.0)(T:W-1(V531_D-1)->C:W-1(V532_D-1)) to (GAGCACT:W6(V525_D-1)->C:W-1(V532_D-1) adding edge: GAGCACT:W6(V525_D-1) to C:W-1(V532_D-1) removing edge Edge(531->532,w:6.0)(T:W-1(V531_D-1)->C:W-1(V532_D-1)) removing edge Edge(525->531,w:6.0)(GAGCACT:W6(V525_D-1)->T:W-1(V531_D-1)) Found potential edge: Edge(525->532,w:6.0) between GAGCACT:W6(V525_D-1) and C:W-1(V532_D-1) removing vertex C:W-1(V532_D-1) was concatenated into GAGCACTC:W6(V525_D-1) Want to move edge Edge(532->533,w:6.0)(C:W-1(V532_D-1)->T:W-1(V533_D-1)) to (GAGCACTC:W6(V525_D-1)->T:W-1(V533_D-1) adding edge: GAGCACTC:W6(V525_D-1) to T:W-1(V533_D-1) removing edge Edge(532->533,w:6.0)(C:W-1(V532_D-1)->T:W-1(V533_D-1)) removing edge Edge(525->532,w:6.0)(GAGCACTC:W6(V525_D-1)->C:W-1(V532_D-1)) Found potential edge: Edge(525->533,w:6.0) between GAGCACTC:W6(V525_D-1) and T:W-1(V533_D-1) removing vertex T:W-1(V533_D-1) was concatenated into GAGCACTCT:W6(V525_D-1) Want to move edge Edge(533->534,w:6.0)(T:W-1(V533_D-1)->G:W-1(V534_D-1)) to (GAGCACTCT:W6(V525_D-1)->G:W-1(V534_D-1) adding edge: GAGCACTCT:W6(V525_D-1) to G:W-1(V534_D-1) removing edge Edge(533->534,w:6.0)(T:W-1(V533_D-1)->G:W-1(V534_D-1)) removing edge Edge(525->533,w:6.0)(GAGCACTCT:W6(V525_D-1)->T:W-1(V533_D-1)) Found potential edge: Edge(525->534,w:6.0) between GAGCACTCT:W6(V525_D-1) and G:W-1(V534_D-1) removing vertex G:W-1(V534_D-1) was concatenated into GAGCACTCTG:W6(V525_D-1) Want to move edge Edge(534->535,w:6.0)(G:W-1(V534_D-1)->A:W-1(V535_D-1)) to (GAGCACTCTG:W6(V525_D-1)->A:W-1(V535_D-1) adding edge: GAGCACTCTG:W6(V525_D-1) to A:W-1(V535_D-1) removing edge Edge(534->535,w:6.0)(G:W-1(V534_D-1)->A:W-1(V535_D-1)) removing edge Edge(525->534,w:6.0)(GAGCACTCTG:W6(V525_D-1)->G:W-1(V534_D-1)) Found potential edge: Edge(525->535,w:6.0) between GAGCACTCTG:W6(V525_D-1) and A:W-1(V535_D-1) removing vertex A:W-1(V535_D-1) was concatenated into GAGCACTCTGA:W6(V525_D-1) Want to move edge Edge(535->536,w:6.0)(A:W-1(V535_D-1)->A:W-1(V536_D-1)) to (GAGCACTCTGA:W6(V525_D-1)->A:W-1(V536_D-1) adding edge: GAGCACTCTGA:W6(V525_D-1) to A:W-1(V536_D-1) removing edge Edge(535->536,w:6.0)(A:W-1(V535_D-1)->A:W-1(V536_D-1)) removing edge Edge(525->535,w:6.0)(GAGCACTCTGA:W6(V525_D-1)->A:W-1(V535_D-1)) Found potential edge: Edge(525->536,w:6.0) between GAGCACTCTGA:W6(V525_D-1) and A:W-1(V536_D-1) removing vertex A:W-1(V536_D-1) was concatenated into GAGCACTCTGAA:W6(V525_D-1) Want to move edge Edge(536->537,w:6.0)(A:W-1(V536_D-1)->C:W-1(V537_D-1)) to (GAGCACTCTGAA:W6(V525_D-1)->C:W-1(V537_D-1) adding edge: GAGCACTCTGAA:W6(V525_D-1) to C:W-1(V537_D-1) removing edge Edge(536->537,w:6.0)(A:W-1(V536_D-1)->C:W-1(V537_D-1)) removing edge Edge(525->536,w:6.0)(GAGCACTCTGAA:W6(V525_D-1)->A:W-1(V536_D-1)) Found potential edge: Edge(525->537,w:6.0) between GAGCACTCTGAA:W6(V525_D-1) and C:W-1(V537_D-1) removing vertex C:W-1(V537_D-1) was concatenated into GAGCACTCTGAAC:W6(V525_D-1) Want to move edge Edge(537->538,w:4.0)(C:W-1(V537_D-1)->C:W-1(V538_D-1)) to (GAGCACTCTGAAC:W6(V525_D-1)->C:W-1(V538_D-1) adding edge: GAGCACTCTGAAC:W6(V525_D-1) to C:W-1(V538_D-1) removing edge Edge(537->538,w:4.0)(C:W-1(V537_D-1)->C:W-1(V538_D-1)) removing edge Edge(525->537,w:6.0)(GAGCACTCTGAAC:W6(V525_D-1)->C:W-1(V537_D-1)) Found potential edge: Edge(525->538,w:4.0) between GAGCACTCTGAAC:W6(V525_D-1) and C:W-1(V538_D-1) removing vertex C:W-1(V538_D-1) was concatenated into GAGCACTCTGAACC:W6(V525_D-1) Want to move edge Edge(538->539,w:6.0)(C:W-1(V538_D-1)->C:W-1(V539_D-1)) to (GAGCACTCTGAACC:W6(V525_D-1)->C:W-1(V539_D-1) adding edge: GAGCACTCTGAACC:W6(V525_D-1) to C:W-1(V539_D-1) removing edge Edge(538->539,w:6.0)(C:W-1(V538_D-1)->C:W-1(V539_D-1)) removing edge Edge(525->538,w:4.0)(GAGCACTCTGAACC:W6(V525_D-1)->C:W-1(V538_D-1)) Found potential edge: Edge(525->539,w:6.0) between GAGCACTCTGAACC:W6(V525_D-1) and C:W-1(V539_D-1) removing vertex C:W-1(V539_D-1) was concatenated into GAGCACTCTGAACCC:W6(V525_D-1) Want to move edge Edge(539->540,w:6.0)(C:W-1(V539_D-1)->T:W-1(V540_D-1)) to (GAGCACTCTGAACCC:W6(V525_D-1)->T:W-1(V540_D-1) adding edge: GAGCACTCTGAACCC:W6(V525_D-1) to T:W-1(V540_D-1) removing edge Edge(539->540,w:6.0)(C:W-1(V539_D-1)->T:W-1(V540_D-1)) removing edge Edge(525->539,w:6.0)(GAGCACTCTGAACCC:W6(V525_D-1)->C:W-1(V539_D-1)) Found potential edge: Edge(525->540,w:6.0) between GAGCACTCTGAACCC:W6(V525_D-1) and T:W-1(V540_D-1) removing vertex T:W-1(V540_D-1) was concatenated into GAGCACTCTGAACCCT:W6(V525_D-1) Want to move edge Edge(540->541,w:6.0)(T:W-1(V540_D-1)->G:W-1(V541_D-1)) to (GAGCACTCTGAACCCT:W6(V525_D-1)->G:W-1(V541_D-1) adding edge: GAGCACTCTGAACCCT:W6(V525_D-1) to G:W-1(V541_D-1) removing edge Edge(540->541,w:6.0)(T:W-1(V540_D-1)->G:W-1(V541_D-1)) removing edge Edge(525->540,w:6.0)(GAGCACTCTGAACCCT:W6(V525_D-1)->T:W-1(V540_D-1)) Found potential edge: Edge(525->541,w:6.0) between GAGCACTCTGAACCCT:W6(V525_D-1) and G:W-1(V541_D-1) removing vertex G:W-1(V541_D-1) was concatenated into GAGCACTCTGAACCCTG:W6(V525_D-1) Want to move edge Edge(541->542,w:6.0)(G:W-1(V541_D-1)->T:W-1(V542_D-1)) to (GAGCACTCTGAACCCTG:W6(V525_D-1)->T:W-1(V542_D-1) adding edge: GAGCACTCTGAACCCTG:W6(V525_D-1) to T:W-1(V542_D-1) removing edge Edge(541->542,w:6.0)(G:W-1(V541_D-1)->T:W-1(V542_D-1)) removing edge Edge(525->541,w:6.0)(GAGCACTCTGAACCCTG:W6(V525_D-1)->G:W-1(V541_D-1)) Found potential edge: Edge(525->542,w:6.0) between GAGCACTCTGAACCCTG:W6(V525_D-1) and T:W-1(V542_D-1) removing vertex T:W-1(V542_D-1) was concatenated into GAGCACTCTGAACCCTGT:W6(V525_D-1) Want to move edge Edge(542->543,w:6.0)(T:W-1(V542_D-1)->G:W-1(V543_D-1)) to (GAGCACTCTGAACCCTGT:W6(V525_D-1)->G:W-1(V543_D-1) adding edge: GAGCACTCTGAACCCTGT:W6(V525_D-1) to G:W-1(V543_D-1) removing edge Edge(542->543,w:6.0)(T:W-1(V542_D-1)->G:W-1(V543_D-1)) removing edge Edge(525->542,w:6.0)(GAGCACTCTGAACCCTGT:W6(V525_D-1)->T:W-1(V542_D-1)) Found potential edge: Edge(525->543,w:6.0) between GAGCACTCTGAACCCTGT:W6(V525_D-1) and G:W-1(V543_D-1) removing vertex G:W-1(V543_D-1) was concatenated into GAGCACTCTGAACCCTGTG:W6(V525_D-1) Want to move edge Edge(543->544,w:6.0)(G:W-1(V543_D-1)->A:W-1(V544_D-1)) to (GAGCACTCTGAACCCTGTG:W6(V525_D-1)->A:W-1(V544_D-1) adding edge: GAGCACTCTGAACCCTGTG:W6(V525_D-1) to A:W-1(V544_D-1) removing edge Edge(543->544,w:6.0)(G:W-1(V543_D-1)->A:W-1(V544_D-1)) removing edge Edge(525->543,w:6.0)(GAGCACTCTGAACCCTGTG:W6(V525_D-1)->G:W-1(V543_D-1)) Found potential edge: Edge(525->544,w:6.0) between GAGCACTCTGAACCCTGTG:W6(V525_D-1) and A:W-1(V544_D-1) removing vertex A:W-1(V544_D-1) was concatenated into GAGCACTCTGAACCCTGTGA:W6(V525_D-1) Want to move edge Edge(544->545,w:6.0)(A:W-1(V544_D-1)->G:W-1(V545_D-1)) to (GAGCACTCTGAACCCTGTGA:W6(V525_D-1)->G:W-1(V545_D-1) adding edge: GAGCACTCTGAACCCTGTGA:W6(V525_D-1) to G:W-1(V545_D-1) removing edge Edge(544->545,w:6.0)(A:W-1(V544_D-1)->G:W-1(V545_D-1)) removing edge Edge(525->544,w:6.0)(GAGCACTCTGAACCCTGTGA:W6(V525_D-1)->A:W-1(V544_D-1)) Found potential edge: Edge(525->545,w:6.0) between GAGCACTCTGAACCCTGTGA:W6(V525_D-1) and G:W-1(V545_D-1) removing vertex G:W-1(V545_D-1) was concatenated into GAGCACTCTGAACCCTGTGAG:W6(V525_D-1) Want to move edge Edge(545->546,w:6.0)(G:W-1(V545_D-1)->G:W-1(V546_D-1)) to (GAGCACTCTGAACCCTGTGAG:W6(V525_D-1)->G:W-1(V546_D-1) adding edge: GAGCACTCTGAACCCTGTGAG:W6(V525_D-1) to G:W-1(V546_D-1) removing edge Edge(545->546,w:6.0)(G:W-1(V545_D-1)->G:W-1(V546_D-1)) removing edge Edge(525->545,w:6.0)(GAGCACTCTGAACCCTGTGAG:W6(V525_D-1)->G:W-1(V545_D-1)) Found potential edge: Edge(525->546,w:6.0) between GAGCACTCTGAACCCTGTGAG:W6(V525_D-1) and G:W-1(V546_D-1) removing vertex G:W-1(V546_D-1) was concatenated into GAGCACTCTGAACCCTGTGAGG:W6(V525_D-1) Want to move edge Edge(546->547,w:6.0)(G:W-1(V546_D-1)->C:W-1(V547_D-1)) to (GAGCACTCTGAACCCTGTGAGG:W6(V525_D-1)->C:W-1(V547_D-1) adding edge: GAGCACTCTGAACCCTGTGAGG:W6(V525_D-1) to C:W-1(V547_D-1) removing edge Edge(546->547,w:6.0)(G:W-1(V546_D-1)->C:W-1(V547_D-1)) removing edge Edge(525->546,w:6.0)(GAGCACTCTGAACCCTGTGAGG:W6(V525_D-1)->G:W-1(V546_D-1)) Found potential edge: Edge(525->547,w:6.0) between GAGCACTCTGAACCCTGTGAGG:W6(V525_D-1) and C:W-1(V547_D-1) removing vertex C:W-1(V547_D-1) was concatenated into GAGCACTCTGAACCCTGTGAGGC:W6(V525_D-1) Want to move edge Edge(547->548,w:6.0)(C:W-1(V547_D-1)->A:W-1(V548_D-1)) to (GAGCACTCTGAACCCTGTGAGGC:W6(V525_D-1)->A:W-1(V548_D-1) adding edge: GAGCACTCTGAACCCTGTGAGGC:W6(V525_D-1) to A:W-1(V548_D-1) removing edge Edge(547->548,w:6.0)(C:W-1(V547_D-1)->A:W-1(V548_D-1)) removing edge Edge(525->547,w:6.0)(GAGCACTCTGAACCCTGTGAGGC:W6(V525_D-1)->C:W-1(V547_D-1)) Found potential edge: Edge(525->548,w:6.0) between GAGCACTCTGAACCCTGTGAGGC:W6(V525_D-1) and A:W-1(V548_D-1) removing vertex A:W-1(V548_D-1) was concatenated into GAGCACTCTGAACCCTGTGAGGCA:W6(V525_D-1) Want to move edge Edge(548->549,w:6.0)(A:W-1(V548_D-1)->A:W-1(V549_D-1)) to (GAGCACTCTGAACCCTGTGAGGCA:W6(V525_D-1)->A:W-1(V549_D-1) adding edge: GAGCACTCTGAACCCTGTGAGGCA:W6(V525_D-1) to A:W-1(V549_D-1) removing edge Edge(548->549,w:6.0)(A:W-1(V548_D-1)->A:W-1(V549_D-1)) removing edge Edge(525->548,w:6.0)(GAGCACTCTGAACCCTGTGAGGCA:W6(V525_D-1)->A:W-1(V548_D-1)) Found potential edge: Edge(549->550,w:8.0) between A:W-1(V549_D-1) and G:W-1(V550_D-1) removing vertex G:W-1(V550_D-1) was concatenated into AG:W8(V549_D-1) Want to move edge Edge(550->551,w:8.0)(G:W-1(V550_D-1)->T:W-1(V551_D-1)) to (AG:W8(V549_D-1)->T:W-1(V551_D-1) adding edge: AG:W8(V549_D-1) to T:W-1(V551_D-1) removing edge Edge(550->551,w:8.0)(G:W-1(V550_D-1)->T:W-1(V551_D-1)) removing edge Edge(549->550,w:8.0)(AG:W8(V549_D-1)->G:W-1(V550_D-1)) Found potential edge: Edge(549->551,w:8.0) between AG:W8(V549_D-1) and T:W-1(V551_D-1) removing vertex T:W-1(V551_D-1) was concatenated into AGT:W8(V549_D-1) Want to move edge Edge(551->552,w:8.0)(T:W-1(V551_D-1)->C:W-1(V552_D-1)) to (AGT:W8(V549_D-1)->C:W-1(V552_D-1) adding edge: AGT:W8(V549_D-1) to C:W-1(V552_D-1) removing edge Edge(551->552,w:8.0)(T:W-1(V551_D-1)->C:W-1(V552_D-1)) removing edge Edge(549->551,w:8.0)(AGT:W8(V549_D-1)->T:W-1(V551_D-1)) Found potential edge: Edge(549->552,w:8.0) between AGT:W8(V549_D-1) and C:W-1(V552_D-1) removing vertex C:W-1(V552_D-1) was concatenated into AGTC:W8(V549_D-1) Want to move edge Edge(552->553,w:8.0)(C:W-1(V552_D-1)->C:W-1(V553_D-1)) to (AGTC:W8(V549_D-1)->C:W-1(V553_D-1) adding edge: AGTC:W8(V549_D-1) to C:W-1(V553_D-1) removing edge Edge(552->553,w:8.0)(C:W-1(V552_D-1)->C:W-1(V553_D-1)) removing edge Edge(549->552,w:8.0)(AGTC:W8(V549_D-1)->C:W-1(V552_D-1)) Found potential edge: Edge(549->553,w:8.0) between AGTC:W8(V549_D-1) and C:W-1(V553_D-1) removing vertex C:W-1(V553_D-1) was concatenated into AGTCC:W8(V549_D-1) Want to move edge Edge(553->554,w:8.0)(C:W-1(V553_D-1)->A:W-1(V554_D-1)) to (AGTCC:W8(V549_D-1)->A:W-1(V554_D-1) adding edge: AGTCC:W8(V549_D-1) to A:W-1(V554_D-1) removing edge Edge(553->554,w:8.0)(C:W-1(V553_D-1)->A:W-1(V554_D-1)) removing edge Edge(549->553,w:8.0)(AGTCC:W8(V549_D-1)->C:W-1(V553_D-1)) Found potential edge: Edge(549->554,w:8.0) between AGTCC:W8(V549_D-1) and A:W-1(V554_D-1) removing vertex A:W-1(V554_D-1) was concatenated into AGTCCA:W8(V549_D-1) Want to move edge Edge(554->555,w:6.0)(A:W-1(V554_D-1)->C:W-1(V555_D-1)) to (AGTCCA:W8(V549_D-1)->C:W-1(V555_D-1) adding edge: AGTCCA:W8(V549_D-1) to C:W-1(V555_D-1) removing edge Edge(554->555,w:6.0)(A:W-1(V554_D-1)->C:W-1(V555_D-1)) removing edge Edge(549->554,w:8.0)(AGTCCA:W8(V549_D-1)->A:W-1(V554_D-1)) Found potential edge: Edge(549->555,w:6.0) between AGTCCA:W8(V549_D-1) and C:W-1(V555_D-1) removing vertex C:W-1(V555_D-1) was concatenated into AGTCCAC:W8(V549_D-1) Want to move edge Edge(555->556,w:6.0)(C:W-1(V555_D-1)->C:W-1(V556_D-1)) to (AGTCCAC:W8(V549_D-1)->C:W-1(V556_D-1) adding edge: AGTCCAC:W8(V549_D-1) to C:W-1(V556_D-1) removing edge Edge(555->556,w:6.0)(C:W-1(V555_D-1)->C:W-1(V556_D-1)) removing edge Edge(549->555,w:6.0)(AGTCCAC:W8(V549_D-1)->C:W-1(V555_D-1)) Found potential edge: Edge(549->556,w:6.0) between AGTCCAC:W8(V549_D-1) and C:W-1(V556_D-1) removing vertex C:W-1(V556_D-1) was concatenated into AGTCCACC:W7(V549_D-1) Want to move edge Edge(556->557,w:4.0)(C:W-1(V556_D-1)->A:W-1(V557_D-1)) to (AGTCCACC:W7(V549_D-1)->A:W-1(V557_D-1) adding edge: AGTCCACC:W7(V549_D-1) to A:W-1(V557_D-1) removing edge Edge(556->557,w:4.0)(C:W-1(V556_D-1)->A:W-1(V557_D-1)) removing edge Edge(549->556,w:6.0)(AGTCCACC:W7(V549_D-1)->C:W-1(V556_D-1)) Found potential edge: Edge(549->557,w:4.0) between AGTCCACC:W7(V549_D-1) and A:W-1(V557_D-1) removing vertex A:W-1(V557_D-1) was concatenated into AGTCCACCA:W7(V549_D-1) Want to move edge Edge(557->558,w:4.0)(A:W-1(V557_D-1)->C:W-1(V558_D-1)) to (AGTCCACCA:W7(V549_D-1)->C:W-1(V558_D-1) adding edge: AGTCCACCA:W7(V549_D-1) to C:W-1(V558_D-1) removing edge Edge(557->558,w:4.0)(A:W-1(V557_D-1)->C:W-1(V558_D-1)) removing edge Edge(549->557,w:4.0)(AGTCCACCA:W7(V549_D-1)->A:W-1(V557_D-1)) Found potential edge: Edge(549->558,w:4.0) between AGTCCACCA:W7(V549_D-1) and C:W-1(V558_D-1) removing vertex C:W-1(V558_D-1) was concatenated into AGTCCACCAC:W7(V549_D-1) Want to move edge Edge(558->559,w:4.0)(C:W-1(V558_D-1)->C:W-1(V559_D-1)) to (AGTCCACCAC:W7(V549_D-1)->C:W-1(V559_D-1) adding edge: AGTCCACCAC:W7(V549_D-1) to C:W-1(V559_D-1) removing edge Edge(558->559,w:4.0)(C:W-1(V558_D-1)->C:W-1(V559_D-1)) removing edge Edge(549->558,w:4.0)(AGTCCACCAC:W7(V549_D-1)->C:W-1(V558_D-1)) Found potential edge: Edge(549->559,w:4.0) between AGTCCACCAC:W7(V549_D-1) and C:W-1(V559_D-1) removing vertex C:W-1(V559_D-1) was concatenated into AGTCCACCACC:W6(V549_D-1) Want to move edge Edge(559->560,w:2.0)(C:W-1(V559_D-1)->A:W-1(V560_D-1)) to (AGTCCACCACC:W6(V549_D-1)->A:W-1(V560_D-1) adding edge: AGTCCACCACC:W6(V549_D-1) to A:W-1(V560_D-1) removing edge Edge(559->560,w:2.0)(C:W-1(V559_D-1)->A:W-1(V560_D-1)) removing edge Edge(549->559,w:4.0)(AGTCCACCACC:W6(V549_D-1)->C:W-1(V559_D-1)) Found potential edge: Edge(549->560,w:2.0) between AGTCCACCACC:W6(V549_D-1) and A:W-1(V560_D-1) removing vertex A:W-1(V560_D-1) was concatenated into AGTCCACCACCA:W6(V549_D-1) Want to move edge Edge(560->561,w:2.0)(A:W-1(V560_D-1)->G:W-1(V561_D-1)) to (AGTCCACCACCA:W6(V549_D-1)->G:W-1(V561_D-1) adding edge: AGTCCACCACCA:W6(V549_D-1) to G:W-1(V561_D-1) removing edge Edge(560->561,w:2.0)(A:W-1(V560_D-1)->G:W-1(V561_D-1)) removing edge Edge(549->560,w:2.0)(AGTCCACCACCA:W6(V549_D-1)->A:W-1(V560_D-1)) Found potential edge: Edge(549->561,w:2.0) between AGTCCACCACCA:W6(V549_D-1) and G:W-1(V561_D-1) removing vertex G:W-1(V561_D-1) was concatenated into AGTCCACCACCAG:W6(V549_D-1) Want to move edge Edge(561->562,w:2.0)(G:W-1(V561_D-1)->C:W-1(V562_D-1)) to (AGTCCACCACCAG:W6(V549_D-1)->C:W-1(V562_D-1) adding edge: AGTCCACCACCAG:W6(V549_D-1) to C:W-1(V562_D-1) removing edge Edge(561->562,w:2.0)(G:W-1(V561_D-1)->C:W-1(V562_D-1)) removing edge Edge(549->561,w:2.0)(AGTCCACCACCAG:W6(V549_D-1)->G:W-1(V561_D-1)) Found potential edge: Edge(549->562,w:2.0) between AGTCCACCACCAG:W6(V549_D-1) and C:W-1(V562_D-1) removing vertex C:W-1(V562_D-1) was concatenated into AGTCCACCACCAGC:W5(V549_D-1) Want to move edge Edge(562->563,w:2.0)(C:W-1(V562_D-1)->G:W-1(V563_D-1)) to (AGTCCACCACCAGC:W5(V549_D-1)->G:W-1(V563_D-1) adding edge: AGTCCACCACCAGC:W5(V549_D-1) to G:W-1(V563_D-1) removing edge Edge(562->563,w:2.0)(C:W-1(V562_D-1)->G:W-1(V563_D-1)) removing edge Edge(549->562,w:2.0)(AGTCCACCACCAGC:W5(V549_D-1)->C:W-1(V562_D-1)) Found potential edge: Edge(549->563,w:2.0) between AGTCCACCACCAGC:W5(V549_D-1) and G:W-1(V563_D-1) removing vertex G:W-1(V563_D-1) was concatenated into AGTCCACCACCAGCG:W5(V549_D-1) Want to move edge Edge(563->564,w:2.0)(G:W-1(V563_D-1)->T:W-1(V564_D-1)) to (AGTCCACCACCAGCG:W5(V549_D-1)->T:W-1(V564_D-1) adding edge: AGTCCACCACCAGCG:W5(V549_D-1) to T:W-1(V564_D-1) removing edge Edge(563->564,w:2.0)(G:W-1(V563_D-1)->T:W-1(V564_D-1)) removing edge Edge(549->563,w:2.0)(AGTCCACCACCAGCG:W5(V549_D-1)->G:W-1(V563_D-1)) Found potential edge: Edge(549->564,w:2.0) between AGTCCACCACCAGCG:W5(V549_D-1) and T:W-1(V564_D-1) removing vertex T:W-1(V564_D-1) was concatenated into AGTCCACCACCAGCGT:W5(V549_D-1) Want to move edge Edge(564->565,w:2.0)(T:W-1(V564_D-1)->A:W-1(V565_D-1)) to (AGTCCACCACCAGCGT:W5(V549_D-1)->A:W-1(V565_D-1) adding edge: AGTCCACCACCAGCGT:W5(V549_D-1) to A:W-1(V565_D-1) removing edge Edge(564->565,w:2.0)(T:W-1(V564_D-1)->A:W-1(V565_D-1)) removing edge Edge(549->564,w:2.0)(AGTCCACCACCAGCGT:W5(V549_D-1)->T:W-1(V564_D-1)) Found potential edge: Edge(549->565,w:2.0) between AGTCCACCACCAGCGT:W5(V549_D-1) and A:W-1(V565_D-1) removing vertex A:W-1(V565_D-1) was concatenated into AGTCCACCACCAGCGTA:W5(V549_D-1) Want to move edge Edge(565->566,w:2.0)(A:W-1(V565_D-1)->T:W-1(V566_D-1)) to (AGTCCACCACCAGCGTA:W5(V549_D-1)->T:W-1(V566_D-1) adding edge: AGTCCACCACCAGCGTA:W5(V549_D-1) to T:W-1(V566_D-1) removing edge Edge(565->566,w:2.0)(A:W-1(V565_D-1)->T:W-1(V566_D-1)) removing edge Edge(549->565,w:2.0)(AGTCCACCACCAGCGTA:W5(V549_D-1)->A:W-1(V565_D-1)) Found potential edge: Edge(549->566,w:2.0) between AGTCCACCACCAGCGTA:W5(V549_D-1) and T:W-1(V566_D-1) removing vertex T:W-1(V566_D-1) was concatenated into AGTCCACCACCAGCGTAT:W5(V549_D-1) Want to move edge Edge(566->567,w:2.0)(T:W-1(V566_D-1)->C:W-1(V567_D-1)) to (AGTCCACCACCAGCGTAT:W5(V549_D-1)->C:W-1(V567_D-1) adding edge: AGTCCACCACCAGCGTAT:W5(V549_D-1) to C:W-1(V567_D-1) removing edge Edge(566->567,w:2.0)(T:W-1(V566_D-1)->C:W-1(V567_D-1)) removing edge Edge(549->566,w:2.0)(AGTCCACCACCAGCGTAT:W5(V549_D-1)->T:W-1(V566_D-1)) Found potential edge: Edge(549->567,w:2.0) between AGTCCACCACCAGCGTAT:W5(V549_D-1) and C:W-1(V567_D-1) removing vertex C:W-1(V567_D-1) was concatenated into AGTCCACCACCAGCGTATC:W4(V549_D-1) Want to move edge Edge(567->568,w:4.0)(C:W-1(V567_D-1)->T:W-1(V568_D-1)) to (AGTCCACCACCAGCGTATC:W4(V549_D-1)->T:W-1(V568_D-1) adding edge: AGTCCACCACCAGCGTATC:W4(V549_D-1) to T:W-1(V568_D-1) removing edge Edge(567->568,w:4.0)(C:W-1(V567_D-1)->T:W-1(V568_D-1)) removing edge Edge(549->567,w:2.0)(AGTCCACCACCAGCGTATC:W4(V549_D-1)->C:W-1(V567_D-1)) Found potential edge: Edge(549->568,w:4.0) between AGTCCACCACCAGCGTATC:W4(V549_D-1) and T:W-1(V568_D-1) removing vertex T:W-1(V568_D-1) was concatenated into AGTCCACCACCAGCGTATCT:W4(V549_D-1) Want to move edge Edge(568->569,w:4.0)(T:W-1(V568_D-1)->A:W-1(V569_D-1)) to (AGTCCACCACCAGCGTATCT:W4(V549_D-1)->A:W-1(V569_D-1) adding edge: AGTCCACCACCAGCGTATCT:W4(V549_D-1) to A:W-1(V569_D-1) removing edge Edge(568->569,w:4.0)(T:W-1(V568_D-1)->A:W-1(V569_D-1)) removing edge Edge(549->568,w:4.0)(AGTCCACCACCAGCGTATCT:W4(V549_D-1)->T:W-1(V568_D-1)) Found potential edge: Edge(549->569,w:4.0) between AGTCCACCACCAGCGTATCT:W4(V549_D-1) and A:W-1(V569_D-1) removing vertex A:W-1(V569_D-1) was concatenated into AGTCCACCACCAGCGTATCTA:W4(V549_D-1) Want to move edge Edge(569->570,w:4.0)(A:W-1(V569_D-1)->G:W-1(V570_D-1)) to (AGTCCACCACCAGCGTATCTA:W4(V549_D-1)->G:W-1(V570_D-1) adding edge: AGTCCACCACCAGCGTATCTA:W4(V549_D-1) to G:W-1(V570_D-1) removing edge Edge(569->570,w:4.0)(A:W-1(V569_D-1)->G:W-1(V570_D-1)) removing edge Edge(549->569,w:4.0)(AGTCCACCACCAGCGTATCTA:W4(V549_D-1)->A:W-1(V569_D-1)) Found potential edge: Edge(549->570,w:4.0) between AGTCCACCACCAGCGTATCTA:W4(V549_D-1) and G:W-1(V570_D-1) removing vertex G:W-1(V570_D-1) was concatenated into AGTCCACCACCAGCGTATCTAG:W4(V549_D-1) Want to move edge Edge(570->571,w:4.0)(G:W-1(V570_D-1)->A:W-1(V571_D-1)) to (AGTCCACCACCAGCGTATCTAG:W4(V549_D-1)->A:W-1(V571_D-1) adding edge: AGTCCACCACCAGCGTATCTAG:W4(V549_D-1) to A:W-1(V571_D-1) removing edge Edge(570->571,w:4.0)(G:W-1(V570_D-1)->A:W-1(V571_D-1)) removing edge Edge(549->570,w:4.0)(AGTCCACCACCAGCGTATCTAG:W4(V549_D-1)->G:W-1(V570_D-1)) Found potential edge: Edge(549->571,w:4.0) between AGTCCACCACCAGCGTATCTAG:W4(V549_D-1) and A:W-1(V571_D-1) removing vertex A:W-1(V571_D-1) was concatenated into AGTCCACCACCAGCGTATCTAGA:W4(V549_D-1) Want to move edge Edge(571->572,w:4.0)(A:W-1(V571_D-1)->C:W-1(V572_D-1)) to (AGTCCACCACCAGCGTATCTAGA:W4(V549_D-1)->C:W-1(V572_D-1) adding edge: AGTCCACCACCAGCGTATCTAGA:W4(V549_D-1) to C:W-1(V572_D-1) removing edge Edge(571->572,w:4.0)(A:W-1(V571_D-1)->C:W-1(V572_D-1)) removing edge Edge(549->571,w:4.0)(AGTCCACCACCAGCGTATCTAGA:W4(V549_D-1)->A:W-1(V571_D-1)) Found potential edge: Edge(549->572,w:4.0) between AGTCCACCACCAGCGTATCTAGA:W4(V549_D-1) and C:W-1(V572_D-1) removing vertex C:W-1(V572_D-1) was concatenated into AGTCCACCACCAGCGTATCTAGAC:W4(V549_D-1) Want to move edge Edge(572->573,w:4.0)(C:W-1(V572_D-1)->C:W-1(V573_D-1)) to (AGTCCACCACCAGCGTATCTAGAC:W4(V549_D-1)->C:W-1(V573_D-1) adding edge: AGTCCACCACCAGCGTATCTAGAC:W4(V549_D-1) to C:W-1(V573_D-1) removing edge Edge(572->573,w:4.0)(C:W-1(V572_D-1)->C:W-1(V573_D-1)) removing edge Edge(549->572,w:4.0)(AGTCCACCACCAGCGTATCTAGAC:W4(V549_D-1)->C:W-1(V572_D-1)) Found potential edge: Edge(549->573,w:4.0) between AGTCCACCACCAGCGTATCTAGAC:W4(V549_D-1) and C:W-1(V573_D-1) removing vertex C:W-1(V573_D-1) was concatenated into AGTCCACCACCAGCGTATCTAGACC:W4(V549_D-1) Want to move edge Edge(573->574,w:4.0)(C:W-1(V573_D-1)->C:W-1(V574_D-1)) to (AGTCCACCACCAGCGTATCTAGACC:W4(V549_D-1)->C:W-1(V574_D-1) adding edge: AGTCCACCACCAGCGTATCTAGACC:W4(V549_D-1) to C:W-1(V574_D-1) removing edge Edge(573->574,w:4.0)(C:W-1(V573_D-1)->C:W-1(V574_D-1)) removing edge Edge(549->573,w:4.0)(AGTCCACCACCAGCGTATCTAGACC:W4(V549_D-1)->C:W-1(V573_D-1)) Found potential edge: Edge(549->574,w:4.0) between AGTCCACCACCAGCGTATCTAGACC:W4(V549_D-1) and C:W-1(V574_D-1) removing vertex C:W-1(V574_D-1) was concatenated into AGTCCACCACCAGCGTATCTAGACCC:W4(V549_D-1) Want to move edge Edge(574->575,w:4.0)(C:W-1(V574_D-1)->A:W-1(V575_D-1)) to (AGTCCACCACCAGCGTATCTAGACCC:W4(V549_D-1)->A:W-1(V575_D-1) adding edge: AGTCCACCACCAGCGTATCTAGACCC:W4(V549_D-1) to A:W-1(V575_D-1) removing edge Edge(574->575,w:4.0)(C:W-1(V574_D-1)->A:W-1(V575_D-1)) removing edge Edge(549->574,w:4.0)(AGTCCACCACCAGCGTATCTAGACCC:W4(V549_D-1)->C:W-1(V574_D-1)) Found potential edge: Edge(549->575,w:4.0) between AGTCCACCACCAGCGTATCTAGACCC:W4(V549_D-1) and A:W-1(V575_D-1) removing vertex A:W-1(V575_D-1) was concatenated into AGTCCACCACCAGCGTATCTAGACCCA:W4(V549_D-1) Want to move edge Edge(575->576,w:4.0)(A:W-1(V575_D-1)->G:W-1(V576_D-1)) to (AGTCCACCACCAGCGTATCTAGACCCA:W4(V549_D-1)->G:W-1(V576_D-1) adding edge: AGTCCACCACCAGCGTATCTAGACCCA:W4(V549_D-1) to G:W-1(V576_D-1) removing edge Edge(575->576,w:4.0)(A:W-1(V575_D-1)->G:W-1(V576_D-1)) removing edge Edge(549->575,w:4.0)(AGTCCACCACCAGCGTATCTAGACCCA:W4(V549_D-1)->A:W-1(V575_D-1)) Found potential edge: Edge(549->576,w:4.0) between AGTCCACCACCAGCGTATCTAGACCCA:W4(V549_D-1) and G:W-1(V576_D-1) removing vertex G:W-1(V576_D-1) was concatenated into AGTCCACCACCAGCGTATCTAGACCCAG:W4(V549_D-1) Want to move edge Edge(576->577,w:4.0)(G:W-1(V576_D-1)->G:W-1(V577_D-1)) to (AGTCCACCACCAGCGTATCTAGACCCAG:W4(V549_D-1)->G:W-1(V577_D-1) adding edge: AGTCCACCACCAGCGTATCTAGACCCAG:W4(V549_D-1) to G:W-1(V577_D-1) removing edge Edge(576->577,w:4.0)(G:W-1(V576_D-1)->G:W-1(V577_D-1)) removing edge Edge(549->576,w:4.0)(AGTCCACCACCAGCGTATCTAGACCCAG:W4(V549_D-1)->G:W-1(V576_D-1)) Found potential edge: Edge(549->577,w:4.0) between AGTCCACCACCAGCGTATCTAGACCCAG:W4(V549_D-1) and G:W-1(V577_D-1) removing vertex G:W-1(V577_D-1) was concatenated into AGTCCACCACCAGCGTATCTAGACCCAGG:W4(V549_D-1) Want to move edge Edge(577->578,w:4.0)(G:W-1(V577_D-1)->C:W-1(V578_D-1)) to (AGTCCACCACCAGCGTATCTAGACCCAGG:W4(V549_D-1)->C:W-1(V578_D-1) adding edge: AGTCCACCACCAGCGTATCTAGACCCAGG:W4(V549_D-1) to C:W-1(V578_D-1) removing edge Edge(577->578,w:4.0)(G:W-1(V577_D-1)->C:W-1(V578_D-1)) removing edge Edge(549->577,w:4.0)(AGTCCACCACCAGCGTATCTAGACCCAGG:W4(V549_D-1)->G:W-1(V577_D-1)) Found potential edge: Edge(549->578,w:4.0) between AGTCCACCACCAGCGTATCTAGACCCAGG:W4(V549_D-1) and C:W-1(V578_D-1) removing vertex C:W-1(V578_D-1) was concatenated into AGTCCACCACCAGCGTATCTAGACCCAGGC:W4(V549_D-1) Want to move edge Edge(578->579,w:4.0)(C:W-1(V578_D-1)->C:W-1(V579_D-1)) to (AGTCCACCACCAGCGTATCTAGACCCAGGC:W4(V549_D-1)->C:W-1(V579_D-1) adding edge: AGTCCACCACCAGCGTATCTAGACCCAGGC:W4(V549_D-1) to C:W-1(V579_D-1) removing edge Edge(578->579,w:4.0)(C:W-1(V578_D-1)->C:W-1(V579_D-1)) removing edge Edge(549->578,w:4.0)(AGTCCACCACCAGCGTATCTAGACCCAGGC:W4(V549_D-1)->C:W-1(V578_D-1)) Found potential edge: Edge(549->579,w:4.0) between AGTCCACCACCAGCGTATCTAGACCCAGGC:W4(V549_D-1) and C:W-1(V579_D-1) removing vertex C:W-1(V579_D-1) was concatenated into AGTCCACCAC...GACCCAGGCC:W4(V549_D-1) Want to move edge Edge(579->580,w:4.0)(C:W-1(V579_D-1)->A:W-1(V580_D-1)) to (AGTCCACCAC...GACCCAGGCC:W4(V549_D-1)->A:W-1(V580_D-1) adding edge: AGTCCACCAC...GACCCAGGCC:W4(V549_D-1) to A:W-1(V580_D-1) removing edge Edge(579->580,w:4.0)(C:W-1(V579_D-1)->A:W-1(V580_D-1)) removing edge Edge(549->579,w:4.0)(AGTCCACCAC...GACCCAGGCC:W4(V549_D-1)->C:W-1(V579_D-1)) Found potential edge: Edge(549->580,w:4.0) between AGTCCACCAC...GACCCAGGCC:W4(V549_D-1) and A:W-1(V580_D-1) removing vertex A:W-1(V580_D-1) was concatenated into AGTCCACCAC...ACCCAGGCCA:W4(V549_D-1) Want to move edge Edge(580->581,w:4.0)(A:W-1(V580_D-1)->T:W-1(V581_D-1)) to (AGTCCACCAC...ACCCAGGCCA:W4(V549_D-1)->T:W-1(V581_D-1) adding edge: AGTCCACCAC...ACCCAGGCCA:W4(V549_D-1) to T:W-1(V581_D-1) removing edge Edge(580->581,w:4.0)(A:W-1(V580_D-1)->T:W-1(V581_D-1)) removing edge Edge(549->580,w:4.0)(AGTCCACCAC...ACCCAGGCCA:W4(V549_D-1)->A:W-1(V580_D-1)) Found potential edge: Edge(549->581,w:4.0) between AGTCCACCAC...ACCCAGGCCA:W4(V549_D-1) and T:W-1(V581_D-1) removing vertex T:W-1(V581_D-1) was concatenated into AGTCCACCAC...CCCAGGCCAT:W4(V549_D-1) Want to move edge Edge(581->582,w:4.0)(T:W-1(V581_D-1)->C:W-1(V582_D-1)) to (AGTCCACCAC...CCCAGGCCAT:W4(V549_D-1)->C:W-1(V582_D-1) adding edge: AGTCCACCAC...CCCAGGCCAT:W4(V549_D-1) to C:W-1(V582_D-1) removing edge Edge(581->582,w:4.0)(T:W-1(V581_D-1)->C:W-1(V582_D-1)) removing edge Edge(549->581,w:4.0)(AGTCCACCAC...CCCAGGCCAT:W4(V549_D-1)->T:W-1(V581_D-1)) Found potential edge: Edge(549->582,w:4.0) between AGTCCACCAC...CCCAGGCCAT:W4(V549_D-1) and C:W-1(V582_D-1) removing vertex C:W-1(V582_D-1) was concatenated into AGTCCACCAC...CCAGGCCATC:W4(V549_D-1) Want to move edge Edge(582->583,w:4.0)(C:W-1(V582_D-1)->T:W-1(V583_D-1)) to (AGTCCACCAC...CCAGGCCATC:W4(V549_D-1)->T:W-1(V583_D-1) adding edge: AGTCCACCAC...CCAGGCCATC:W4(V549_D-1) to T:W-1(V583_D-1) removing edge Edge(582->583,w:4.0)(C:W-1(V582_D-1)->T:W-1(V583_D-1)) removing edge Edge(549->582,w:4.0)(AGTCCACCAC...CCAGGCCATC:W4(V549_D-1)->C:W-1(V582_D-1)) Found potential edge: Edge(549->583,w:4.0) between AGTCCACCAC...CCAGGCCATC:W4(V549_D-1) and T:W-1(V583_D-1) removing vertex T:W-1(V583_D-1) was concatenated into AGTCCACCAC...CAGGCCATCT:W4(V549_D-1) Want to move edge Edge(583->584,w:4.0)(T:W-1(V583_D-1)->A:W-1(V584_D-1)) to (AGTCCACCAC...CAGGCCATCT:W4(V549_D-1)->A:W-1(V584_D-1) adding edge: AGTCCACCAC...CAGGCCATCT:W4(V549_D-1) to A:W-1(V584_D-1) removing edge Edge(583->584,w:4.0)(T:W-1(V583_D-1)->A:W-1(V584_D-1)) removing edge Edge(549->583,w:4.0)(AGTCCACCAC...CAGGCCATCT:W4(V549_D-1)->T:W-1(V583_D-1)) Found potential edge: Edge(549->584,w:4.0) between AGTCCACCAC...CAGGCCATCT:W4(V549_D-1) and A:W-1(V584_D-1) removing vertex A:W-1(V584_D-1) was concatenated into AGTCCACCAC...AGGCCATCTA:W4(V549_D-1) Want to move edge Edge(584->585,w:4.0)(A:W-1(V584_D-1)->A:W-1(V585_D-1)) to (AGTCCACCAC...AGGCCATCTA:W4(V549_D-1)->A:W-1(V585_D-1) adding edge: AGTCCACCAC...AGGCCATCTA:W4(V549_D-1) to A:W-1(V585_D-1) removing edge Edge(584->585,w:4.0)(A:W-1(V584_D-1)->A:W-1(V585_D-1)) removing edge Edge(549->584,w:4.0)(AGTCCACCAC...AGGCCATCTA:W4(V549_D-1)->A:W-1(V584_D-1)) Found potential edge: Edge(549->585,w:4.0) between AGTCCACCAC...AGGCCATCTA:W4(V549_D-1) and A:W-1(V585_D-1) removing vertex A:W-1(V585_D-1) was concatenated into AGTCCACCAC...GGCCATCTAA:W4(V549_D-1) Want to move edge Edge(585->586,w:4.0)(A:W-1(V585_D-1)->T:W-1(V586_D-1)) to (AGTCCACCAC...GGCCATCTAA:W4(V549_D-1)->T:W-1(V586_D-1) adding edge: AGTCCACCAC...GGCCATCTAA:W4(V549_D-1) to T:W-1(V586_D-1) removing edge Edge(585->586,w:4.0)(A:W-1(V585_D-1)->T:W-1(V586_D-1)) removing edge Edge(549->585,w:4.0)(AGTCCACCAC...GGCCATCTAA:W4(V549_D-1)->A:W-1(V585_D-1)) Found potential edge: Edge(549->586,w:4.0) between AGTCCACCAC...GGCCATCTAA:W4(V549_D-1) and T:W-1(V586_D-1) removing vertex T:W-1(V586_D-1) was concatenated into AGTCCACCAC...GCCATCTAAT:W4(V549_D-1) Want to move edge Edge(586->587,w:4.0)(T:W-1(V586_D-1)->A:W-1(V587_D-1)) to (AGTCCACCAC...GCCATCTAAT:W4(V549_D-1)->A:W-1(V587_D-1) adding edge: AGTCCACCAC...GCCATCTAAT:W4(V549_D-1) to A:W-1(V587_D-1) removing edge Edge(586->587,w:4.0)(T:W-1(V586_D-1)->A:W-1(V587_D-1)) removing edge Edge(549->586,w:4.0)(AGTCCACCAC...GCCATCTAAT:W4(V549_D-1)->T:W-1(V586_D-1)) Found potential edge: Edge(549->587,w:4.0) between AGTCCACCAC...GCCATCTAAT:W4(V549_D-1) and A:W-1(V587_D-1) removing vertex A:W-1(V587_D-1) was concatenated into AGTCCACCAC...CCATCTAATA:W4(V549_D-1) Want to move edge Edge(587->588,w:4.0)(A:W-1(V587_D-1)->A:W-1(V588_D-1)) to (AGTCCACCAC...CCATCTAATA:W4(V549_D-1)->A:W-1(V588_D-1) adding edge: AGTCCACCAC...CCATCTAATA:W4(V549_D-1) to A:W-1(V588_D-1) removing edge Edge(587->588,w:4.0)(A:W-1(V587_D-1)->A:W-1(V588_D-1)) removing edge Edge(549->587,w:4.0)(AGTCCACCAC...CCATCTAATA:W4(V549_D-1)->A:W-1(V587_D-1)) Found potential edge: Edge(549->588,w:4.0) between AGTCCACCAC...CCATCTAATA:W4(V549_D-1) and A:W-1(V588_D-1) removing vertex A:W-1(V588_D-1) was concatenated into AGTCCACCAC...CATCTAATAA:W4(V549_D-1) Want to move edge Edge(588->589,w:4.0)(A:W-1(V588_D-1)->A:W-1(V589_D-1)) to (AGTCCACCAC...CATCTAATAA:W4(V549_D-1)->A:W-1(V589_D-1) adding edge: AGTCCACCAC...CATCTAATAA:W4(V549_D-1) to A:W-1(V589_D-1) removing edge Edge(588->589,w:4.0)(A:W-1(V588_D-1)->A:W-1(V589_D-1)) removing edge Edge(549->588,w:4.0)(AGTCCACCAC...CATCTAATAA:W4(V549_D-1)->A:W-1(V588_D-1)) Found potential edge: Edge(549->589,w:4.0) between AGTCCACCAC...CATCTAATAA:W4(V549_D-1) and A:W-1(V589_D-1) removing vertex A:W-1(V589_D-1) was concatenated into AGTCCACCAC...ATCTAATAAA:W4(V549_D-1) Want to move edge Edge(589->590,w:4.0)(A:W-1(V589_D-1)->G:W-1(V590_D-1)) to (AGTCCACCAC...ATCTAATAAA:W4(V549_D-1)->G:W-1(V590_D-1) adding edge: AGTCCACCAC...ATCTAATAAA:W4(V549_D-1) to G:W-1(V590_D-1) removing edge Edge(589->590,w:4.0)(A:W-1(V589_D-1)->G:W-1(V590_D-1)) removing edge Edge(549->589,w:4.0)(AGTCCACCAC...ATCTAATAAA:W4(V549_D-1)->A:W-1(V589_D-1)) Found potential edge: Edge(549->590,w:4.0) between AGTCCACCAC...ATCTAATAAA:W4(V549_D-1) and G:W-1(V590_D-1) removing vertex G:W-1(V590_D-1) was concatenated into AGTCCACCAC...TCTAATAAAG:W4(V549_D-1) Want to move edge Edge(590->591,w:2.0)(G:W-1(V590_D-1)->G:W-1(V591_D-1)) to (AGTCCACCAC...TCTAATAAAG:W4(V549_D-1)->G:W-1(V591_D-1) adding edge: AGTCCACCAC...TCTAATAAAG:W4(V549_D-1) to G:W-1(V591_D-1) removing edge Edge(590->591,w:2.0)(G:W-1(V590_D-1)->G:W-1(V591_D-1)) removing edge Edge(549->590,w:4.0)(AGTCCACCAC...TCTAATAAAG:W4(V549_D-1)->G:W-1(V590_D-1)) Found potential edge: Edge(549->591,w:2.0) between AGTCCACCAC...TCTAATAAAG:W4(V549_D-1) and G:W-1(V591_D-1) removing vertex G:W-1(V591_D-1) was concatenated into AGTCCACCAC...CTAATAAAGG:W4(V549_D-1) Want to move edge Edge(591->592,w:2.0)(G:W-1(V591_D-1)->A:W-1(V592_D-1)) to (AGTCCACCAC...CTAATAAAGG:W4(V549_D-1)->A:W-1(V592_D-1) adding edge: AGTCCACCAC...CTAATAAAGG:W4(V549_D-1) to A:W-1(V592_D-1) removing edge Edge(591->592,w:2.0)(G:W-1(V591_D-1)->A:W-1(V592_D-1)) removing edge Edge(549->591,w:2.0)(AGTCCACCAC...CTAATAAAGG:W4(V549_D-1)->G:W-1(V591_D-1)) Found potential edge: Edge(549->592,w:2.0) between AGTCCACCAC...CTAATAAAGG:W4(V549_D-1) and A:W-1(V592_D-1) removing vertex A:W-1(V592_D-1) was concatenated into AGTCCACCAC...TAATAAAGGA:W4(V549_D-1) Want to move edge Edge(592->593,w:2.0)(A:W-1(V592_D-1)->A:W-1(V593_D-1)) to (AGTCCACCAC...TAATAAAGGA:W4(V549_D-1)->A:W-1(V593_D-1) adding edge: AGTCCACCAC...TAATAAAGGA:W4(V549_D-1) to A:W-1(V593_D-1) removing edge Edge(592->593,w:2.0)(A:W-1(V592_D-1)->A:W-1(V593_D-1)) removing edge Edge(549->592,w:2.0)(AGTCCACCAC...TAATAAAGGA:W4(V549_D-1)->A:W-1(V592_D-1)) Found potential edge: Edge(549->593,w:2.0) between AGTCCACCAC...TAATAAAGGA:W4(V549_D-1) and A:W-1(V593_D-1) removing vertex A:W-1(V593_D-1) was concatenated into AGTCCACCAC...AATAAAGGAA:W4(V549_D-1) Want to move edge Edge(593->594,w:2.0)(A:W-1(V593_D-1)->A:W-1(V594_D-1)) to (AGTCCACCAC...AATAAAGGAA:W4(V549_D-1)->A:W-1(V594_D-1) adding edge: AGTCCACCAC...AATAAAGGAA:W4(V549_D-1) to A:W-1(V594_D-1) removing edge Edge(593->594,w:2.0)(A:W-1(V593_D-1)->A:W-1(V594_D-1)) removing edge Edge(549->593,w:2.0)(AGTCCACCAC...AATAAAGGAA:W4(V549_D-1)->A:W-1(V593_D-1)) Found potential edge: Edge(549->594,w:2.0) between AGTCCACCAC...AATAAAGGAA:W4(V549_D-1) and A:W-1(V594_D-1) removing vertex A:W-1(V594_D-1) was concatenated into AGTCCACCAC...ATAAAGGAAA:W4(V549_D-1) Want to move edge Edge(594->595,w:2.0)(A:W-1(V594_D-1)->A:W-1(V595_D-1)) to (AGTCCACCAC...ATAAAGGAAA:W4(V549_D-1)->A:W-1(V595_D-1) adding edge: AGTCCACCAC...ATAAAGGAAA:W4(V549_D-1) to A:W-1(V595_D-1) removing edge Edge(594->595,w:2.0)(A:W-1(V594_D-1)->A:W-1(V595_D-1)) removing edge Edge(549->594,w:2.0)(AGTCCACCAC...ATAAAGGAAA:W4(V549_D-1)->A:W-1(V594_D-1)) Found potential edge: Edge(549->595,w:2.0) between AGTCCACCAC...ATAAAGGAAA:W4(V549_D-1) and A:W-1(V595_D-1) removing vertex A:W-1(V595_D-1) was concatenated into AGTCCACCAC...TAAAGGAAAA:W4(V549_D-1) Want to move edge Edge(595->596,w:2.0)(A:W-1(V595_D-1)->C:W-1(V596_D-1)) to (AGTCCACCAC...TAAAGGAAAA:W4(V549_D-1)->C:W-1(V596_D-1) adding edge: AGTCCACCAC...TAAAGGAAAA:W4(V549_D-1) to C:W-1(V596_D-1) removing edge Edge(595->596,w:2.0)(A:W-1(V595_D-1)->C:W-1(V596_D-1)) removing edge Edge(549->595,w:2.0)(AGTCCACCAC...TAAAGGAAAA:W4(V549_D-1)->A:W-1(V595_D-1)) Found potential edge: Edge(549->596,w:2.0) between AGTCCACCAC...TAAAGGAAAA:W4(V549_D-1) and C:W-1(V596_D-1) removing vertex C:W-1(V596_D-1) was concatenated into AGTCCACCAC...AAAGGAAAAC:W4(V549_D-1) Want to move edge Edge(596->597,w:2.0)(C:W-1(V596_D-1)->T:W-1(V597_D-1)) to (AGTCCACCAC...AAAGGAAAAC:W4(V549_D-1)->T:W-1(V597_D-1) adding edge: AGTCCACCAC...AAAGGAAAAC:W4(V549_D-1) to T:W-1(V597_D-1) removing edge Edge(596->597,w:2.0)(C:W-1(V596_D-1)->T:W-1(V597_D-1)) removing edge Edge(549->596,w:2.0)(AGTCCACCAC...AAAGGAAAAC:W4(V549_D-1)->C:W-1(V596_D-1)) Found potential edge: Edge(549->597,w:2.0) between AGTCCACCAC...AAAGGAAAAC:W4(V549_D-1) and T:W-1(V597_D-1) removing vertex T:W-1(V597_D-1) was concatenated into AGTCCACCAC...AAGGAAAACT:W4(V549_D-1) Want to move edge Edge(597->598,w:2.0)(T:W-1(V597_D-1)->G:W-1(V598_D-1)) to (AGTCCACCAC...AAGGAAAACT:W4(V549_D-1)->G:W-1(V598_D-1) adding edge: AGTCCACCAC...AAGGAAAACT:W4(V549_D-1) to G:W-1(V598_D-1) removing edge Edge(597->598,w:2.0)(T:W-1(V597_D-1)->G:W-1(V598_D-1)) removing edge Edge(549->597,w:2.0)(AGTCCACCAC...AAGGAAAACT:W4(V549_D-1)->T:W-1(V597_D-1)) Found potential edge: Edge(549->598,w:2.0) between AGTCCACCAC...AAGGAAAACT:W4(V549_D-1) and G:W-1(V598_D-1) removing vertex G:W-1(V598_D-1) was concatenated into AGTCCACCAC...AGGAAAACTG:W4(V549_D-1) Want to move edge Edge(598->599,w:2.0)(G:W-1(V598_D-1)->C:W-1(V599_D-1)) to (AGTCCACCAC...AGGAAAACTG:W4(V549_D-1)->C:W-1(V599_D-1) adding edge: AGTCCACCAC...AGGAAAACTG:W4(V549_D-1) to C:W-1(V599_D-1) removing edge Edge(598->599,w:2.0)(G:W-1(V598_D-1)->C:W-1(V599_D-1)) removing edge Edge(549->598,w:2.0)(AGTCCACCAC...AGGAAAACTG:W4(V549_D-1)->G:W-1(V598_D-1)) Found potential edge: Edge(549->599,w:2.0) between AGTCCACCAC...AGGAAAACTG:W4(V549_D-1) and C:W-1(V599_D-1) removing vertex C:W-1(V599_D-1) was concatenated into AGTCCACCAC...GGAAAACTGC:W4(V549_D-1) Want to move edge Edge(599->600,w:2.0)(C:W-1(V599_D-1)->A:W-1(V600_D-1)) to (AGTCCACCAC...GGAAAACTGC:W4(V549_D-1)->A:W-1(V600_D-1) adding edge: AGTCCACCAC...GGAAAACTGC:W4(V549_D-1) to A:W-1(V600_D-1) removing edge Edge(599->600,w:2.0)(C:W-1(V599_D-1)->A:W-1(V600_D-1)) removing edge Edge(549->599,w:2.0)(AGTCCACCAC...GGAAAACTGC:W4(V549_D-1)->C:W-1(V599_D-1)) Found potential edge: Edge(549->600,w:2.0) between AGTCCACCAC...GGAAAACTGC:W4(V549_D-1) and A:W-1(V600_D-1) removing vertex A:W-1(V600_D-1) was concatenated into AGTCCACCAC...GAAAACTGCA:W4(V549_D-1) Want to move edge Edge(600->601,w:2.0)(A:W-1(V600_D-1)->T:W-1(V601_D-1)) to (AGTCCACCAC...GAAAACTGCA:W4(V549_D-1)->T:W-1(V601_D-1) adding edge: AGTCCACCAC...GAAAACTGCA:W4(V549_D-1) to T:W-1(V601_D-1) removing edge Edge(600->601,w:2.0)(A:W-1(V600_D-1)->T:W-1(V601_D-1)) removing edge Edge(549->600,w:2.0)(AGTCCACCAC...GAAAACTGCA:W4(V549_D-1)->A:W-1(V600_D-1)) Found potential edge: Edge(549->601,w:2.0) between AGTCCACCAC...GAAAACTGCA:W4(V549_D-1) and T:W-1(V601_D-1) removing vertex T:W-1(V601_D-1) was concatenated into AGTCCACCAC...AAAACTGCAT:W4(V549_D-1) Want to move edge Edge(601->602,w:2.0)(T:W-1(V601_D-1)->C:W-1(V602_D-1)) to (AGTCCACCAC...AAAACTGCAT:W4(V549_D-1)->C:W-1(V602_D-1) adding edge: AGTCCACCAC...AAAACTGCAT:W4(V549_D-1) to C:W-1(V602_D-1) removing edge Edge(601->602,w:2.0)(T:W-1(V601_D-1)->C:W-1(V602_D-1)) removing edge Edge(549->601,w:2.0)(AGTCCACCAC...AAAACTGCAT:W4(V549_D-1)->T:W-1(V601_D-1)) Found potential edge: Edge(549->602,w:2.0) between AGTCCACCAC...AAAACTGCAT:W4(V549_D-1) and C:W-1(V602_D-1) removing vertex C:W-1(V602_D-1) was concatenated into AGTCCACCAC...AAACTGCATC:W4(V549_D-1) Want to move edge Edge(602->603,w:2.0)(C:W-1(V602_D-1)->T:W-1(V603_D-1)) to (AGTCCACCAC...AAACTGCATC:W4(V549_D-1)->T:W-1(V603_D-1) adding edge: AGTCCACCAC...AAACTGCATC:W4(V549_D-1) to T:W-1(V603_D-1) removing edge Edge(602->603,w:2.0)(C:W-1(V602_D-1)->T:W-1(V603_D-1)) removing edge Edge(549->602,w:2.0)(AGTCCACCAC...AAACTGCATC:W4(V549_D-1)->C:W-1(V602_D-1)) Found potential edge: Edge(549->603,w:2.0) between AGTCCACCAC...AAACTGCATC:W4(V549_D-1) and T:W-1(V603_D-1) removing vertex T:W-1(V603_D-1) was concatenated into AGTCCACCAC...AACTGCATCT:W4(V549_D-1) Want to move edge Edge(603->604,w:2.0)(T:W-1(V603_D-1)->T:W-1(V604_D-1)) to (AGTCCACCAC...AACTGCATCT:W4(V549_D-1)->T:W-1(V604_D-1) adding edge: AGTCCACCAC...AACTGCATCT:W4(V549_D-1) to T:W-1(V604_D-1) removing edge Edge(603->604,w:2.0)(T:W-1(V603_D-1)->T:W-1(V604_D-1)) removing edge Edge(549->603,w:2.0)(AGTCCACCAC...AACTGCATCT:W4(V549_D-1)->T:W-1(V603_D-1)) Found potential edge: Edge(549->604,w:2.0) between AGTCCACCAC...AACTGCATCT:W4(V549_D-1) and T:W-1(V604_D-1) removing vertex T:W-1(V604_D-1) was concatenated into AGTCCACCAC...ACTGCATCTT:W4(V549_D-1) Want to move edge Edge(604->605,w:2.0)(T:W-1(V604_D-1)->T:W-1(V605_D-1)) to (AGTCCACCAC...ACTGCATCTT:W4(V549_D-1)->T:W-1(V605_D-1) adding edge: AGTCCACCAC...ACTGCATCTT:W4(V549_D-1) to T:W-1(V605_D-1) removing edge Edge(604->605,w:2.0)(T:W-1(V604_D-1)->T:W-1(V605_D-1)) removing edge Edge(549->604,w:2.0)(AGTCCACCAC...ACTGCATCTT:W4(V549_D-1)->T:W-1(V604_D-1)) Found potential edge: Edge(549->605,w:2.0) between AGTCCACCAC...ACTGCATCTT:W4(V549_D-1) and T:W-1(V605_D-1) removing vertex T:W-1(V605_D-1) was concatenated into AGTCCACCAC...CTGCATCTTT:W4(V549_D-1) Want to move edge Edge(605->606,w:2.0)(T:W-1(V605_D-1)->G:W-1(V606_D-1)) to (AGTCCACCAC...CTGCATCTTT:W4(V549_D-1)->G:W-1(V606_D-1) adding edge: AGTCCACCAC...CTGCATCTTT:W4(V549_D-1) to G:W-1(V606_D-1) removing edge Edge(605->606,w:2.0)(T:W-1(V605_D-1)->G:W-1(V606_D-1)) removing edge Edge(549->605,w:2.0)(AGTCCACCAC...CTGCATCTTT:W4(V549_D-1)->T:W-1(V605_D-1)) Found potential edge: Edge(549->606,w:2.0) between AGTCCACCAC...CTGCATCTTT:W4(V549_D-1) and G:W-1(V606_D-1) removing vertex G:W-1(V606_D-1) was concatenated into AGTCCACCAC...TGCATCTTTG:W4(V549_D-1) Want to move edge Edge(606->607,w:4.0)(G:W-1(V606_D-1)->C:W-1(V607_D-1)) to (AGTCCACCAC...TGCATCTTTG:W4(V549_D-1)->C:W-1(V607_D-1) adding edge: AGTCCACCAC...TGCATCTTTG:W4(V549_D-1) to C:W-1(V607_D-1) removing edge Edge(606->607,w:4.0)(G:W-1(V606_D-1)->C:W-1(V607_D-1)) removing edge Edge(549->606,w:2.0)(AGTCCACCAC...TGCATCTTTG:W4(V549_D-1)->G:W-1(V606_D-1)) Found potential edge: Edge(549->607,w:4.0) between AGTCCACCAC...TGCATCTTTG:W4(V549_D-1) and C:W-1(V607_D-1) removing vertex C:W-1(V607_D-1) was concatenated into AGTCCACCAC...GCATCTTTGC:W4(V549_D-1) Want to move edge Edge(607->608,w:4.0)(C:W-1(V607_D-1)->C:W-1(V608_D-1)) to (AGTCCACCAC...GCATCTTTGC:W4(V549_D-1)->C:W-1(V608_D-1) adding edge: AGTCCACCAC...GCATCTTTGC:W4(V549_D-1) to C:W-1(V608_D-1) removing edge Edge(607->608,w:4.0)(C:W-1(V607_D-1)->C:W-1(V608_D-1)) removing edge Edge(549->607,w:4.0)(AGTCCACCAC...GCATCTTTGC:W4(V549_D-1)->C:W-1(V607_D-1)) Found potential edge: Edge(549->608,w:4.0) between AGTCCACCAC...GCATCTTTGC:W4(V549_D-1) and C:W-1(V608_D-1) removing vertex C:W-1(V608_D-1) was concatenated into AGTCCACCAC...CATCTTTGCC:W4(V549_D-1) Want to move edge Edge(608->609,w:4.0)(C:W-1(V608_D-1)->C:W-1(V609_D-1)) to (AGTCCACCAC...CATCTTTGCC:W4(V549_D-1)->C:W-1(V609_D-1) adding edge: AGTCCACCAC...CATCTTTGCC:W4(V549_D-1) to C:W-1(V609_D-1) removing edge Edge(608->609,w:4.0)(C:W-1(V608_D-1)->C:W-1(V609_D-1)) removing edge Edge(549->608,w:4.0)(AGTCCACCAC...CATCTTTGCC:W4(V549_D-1)->C:W-1(V608_D-1)) Found potential edge: Edge(549->609,w:4.0) between AGTCCACCAC...CATCTTTGCC:W4(V549_D-1) and C:W-1(V609_D-1) removing vertex C:W-1(V609_D-1) was concatenated into AGTCCACCAC...ATCTTTGCCC:W4(V549_D-1) Want to move edge Edge(609->610,w:4.0)(C:W-1(V609_D-1)->A:W-1(V610_D-1)) to (AGTCCACCAC...ATCTTTGCCC:W4(V549_D-1)->A:W-1(V610_D-1) adding edge: AGTCCACCAC...ATCTTTGCCC:W4(V549_D-1) to A:W-1(V610_D-1) removing edge Edge(609->610,w:4.0)(C:W-1(V609_D-1)->A:W-1(V610_D-1)) removing edge Edge(549->609,w:4.0)(AGTCCACCAC...ATCTTTGCCC:W4(V549_D-1)->C:W-1(V609_D-1)) Found potential edge: Edge(549->610,w:4.0) between AGTCCACCAC...ATCTTTGCCC:W4(V549_D-1) and A:W-1(V610_D-1) removing vertex A:W-1(V610_D-1) was concatenated into AGTCCACCAC...TCTTTGCCCA:W4(V549_D-1) Want to move edge Edge(610->611,w:4.0)(A:W-1(V610_D-1)->C:W-1(V611_D-1)) to (AGTCCACCAC...TCTTTGCCCA:W4(V549_D-1)->C:W-1(V611_D-1) adding edge: AGTCCACCAC...TCTTTGCCCA:W4(V549_D-1) to C:W-1(V611_D-1) removing edge Edge(610->611,w:4.0)(A:W-1(V610_D-1)->C:W-1(V611_D-1)) removing edge Edge(549->610,w:4.0)(AGTCCACCAC...TCTTTGCCCA:W4(V549_D-1)->A:W-1(V610_D-1)) Found potential edge: Edge(549->611,w:4.0) between AGTCCACCAC...TCTTTGCCCA:W4(V549_D-1) and C:W-1(V611_D-1) removing vertex C:W-1(V611_D-1) was concatenated into AGTCCACCAC...CTTTGCCCAC:W4(V549_D-1) Want to move edge Edge(611->612,w:4.0)(C:W-1(V611_D-1)->A:W-1(V612_D-1)) to (AGTCCACCAC...CTTTGCCCAC:W4(V549_D-1)->A:W-1(V612_D-1) adding edge: AGTCCACCAC...CTTTGCCCAC:W4(V549_D-1) to A:W-1(V612_D-1) removing edge Edge(611->612,w:4.0)(C:W-1(V611_D-1)->A:W-1(V612_D-1)) removing edge Edge(549->611,w:4.0)(AGTCCACCAC...CTTTGCCCAC:W4(V549_D-1)->C:W-1(V611_D-1)) Found potential edge: Edge(549->612,w:4.0) between AGTCCACCAC...CTTTGCCCAC:W4(V549_D-1) and A:W-1(V612_D-1) removing vertex A:W-1(V612_D-1) was concatenated into AGTCCACCAC...TTTGCCCACA:W4(V549_D-1) Want to move edge Edge(612->613,w:6.0)(A:W-1(V612_D-1)->T:W-1(V613_D-1)) to (AGTCCACCAC...TTTGCCCACA:W4(V549_D-1)->T:W-1(V613_D-1) adding edge: AGTCCACCAC...TTTGCCCACA:W4(V549_D-1) to T:W-1(V613_D-1) removing edge Edge(612->613,w:6.0)(A:W-1(V612_D-1)->T:W-1(V613_D-1)) removing edge Edge(549->612,w:4.0)(AGTCCACCAC...TTTGCCCACA:W4(V549_D-1)->A:W-1(V612_D-1)) Found potential edge: Edge(549->613,w:6.0) between AGTCCACCAC...TTTGCCCACA:W4(V549_D-1) and T:W-1(V613_D-1) removing vertex T:W-1(V613_D-1) was concatenated into AGTCCACCAC...TTGCCCACAT:W4(V549_D-1) Want to move edge Edge(613->614,w:6.0)(T:W-1(V613_D-1)->G:W-1(V614_D-1)) to (AGTCCACCAC...TTGCCCACAT:W4(V549_D-1)->G:W-1(V614_D-1) adding edge: AGTCCACCAC...TTGCCCACAT:W4(V549_D-1) to G:W-1(V614_D-1) removing edge Edge(613->614,w:6.0)(T:W-1(V613_D-1)->G:W-1(V614_D-1)) removing edge Edge(549->613,w:6.0)(AGTCCACCAC...TTGCCCACAT:W4(V549_D-1)->T:W-1(V613_D-1)) Found potential edge: Edge(549->614,w:6.0) between AGTCCACCAC...TTGCCCACAT:W4(V549_D-1) and G:W-1(V614_D-1) removing vertex G:W-1(V614_D-1) was concatenated into AGTCCACCAC...TGCCCACATG:W4(V549_D-1) Want to move edge Edge(614->615,w:6.0)(G:W-1(V614_D-1)->A:W-1(V615_D-1)) to (AGTCCACCAC...TGCCCACATG:W4(V549_D-1)->A:W-1(V615_D-1) adding edge: AGTCCACCAC...TGCCCACATG:W4(V549_D-1) to A:W-1(V615_D-1) removing edge Edge(614->615,w:6.0)(G:W-1(V614_D-1)->A:W-1(V615_D-1)) removing edge Edge(549->614,w:6.0)(AGTCCACCAC...TGCCCACATG:W4(V549_D-1)->G:W-1(V614_D-1)) Found potential edge: Edge(549->615,w:6.0) between AGTCCACCAC...TGCCCACATG:W4(V549_D-1) and A:W-1(V615_D-1) removing vertex A:W-1(V615_D-1) was concatenated into AGTCCACCAC...GCCCACATGA:W4(V549_D-1) Want to move edge Edge(615->616,w:6.0)(A:W-1(V615_D-1)->T:W-1(V616_D-1)) to (AGTCCACCAC...GCCCACATGA:W4(V549_D-1)->T:W-1(V616_D-1) adding edge: AGTCCACCAC...GCCCACATGA:W4(V549_D-1) to T:W-1(V616_D-1) removing edge Edge(615->616,w:6.0)(A:W-1(V615_D-1)->T:W-1(V616_D-1)) removing edge Edge(549->615,w:6.0)(AGTCCACCAC...GCCCACATGA:W4(V549_D-1)->A:W-1(V615_D-1)) Found potential edge: Edge(549->616,w:6.0) between AGTCCACCAC...GCCCACATGA:W4(V549_D-1) and T:W-1(V616_D-1) removing vertex T:W-1(V616_D-1) was concatenated into AGTCCACCAC...CCCACATGAT:W4(V549_D-1) Want to move edge Edge(616->617,w:6.0)(T:W-1(V616_D-1)->G:W-1(V617_D-1)) to (AGTCCACCAC...CCCACATGAT:W4(V549_D-1)->G:W-1(V617_D-1) adding edge: AGTCCACCAC...CCCACATGAT:W4(V549_D-1) to G:W-1(V617_D-1) removing edge Edge(616->617,w:6.0)(T:W-1(V616_D-1)->G:W-1(V617_D-1)) removing edge Edge(549->616,w:6.0)(AGTCCACCAC...CCCACATGAT:W4(V549_D-1)->T:W-1(V616_D-1)) Found potential edge: Edge(549->617,w:6.0) between AGTCCACCAC...CCCACATGAT:W4(V549_D-1) and G:W-1(V617_D-1) removing vertex G:W-1(V617_D-1) was concatenated into AGTCCACCAC...CCACATGATG:W4(V549_D-1) Want to move edge Edge(617->618,w:6.0)(G:W-1(V617_D-1)->C:W-1(V618_D-1)) to (AGTCCACCAC...CCACATGATG:W4(V549_D-1)->C:W-1(V618_D-1) adding edge: AGTCCACCAC...CCACATGATG:W4(V549_D-1) to C:W-1(V618_D-1) removing edge Edge(617->618,w:6.0)(G:W-1(V617_D-1)->C:W-1(V618_D-1)) removing edge Edge(549->617,w:6.0)(AGTCCACCAC...CCACATGATG:W4(V549_D-1)->G:W-1(V617_D-1)) Found potential edge: Edge(549->618,w:6.0) between AGTCCACCAC...CCACATGATG:W4(V549_D-1) and C:W-1(V618_D-1) removing vertex C:W-1(V618_D-1) was concatenated into AGTCCACCAC...CACATGATGC:W4(V549_D-1) Want to move edge Edge(618->619,w:6.0)(C:W-1(V618_D-1)->T:W-1(V619_D-1)) to (AGTCCACCAC...CACATGATGC:W4(V549_D-1)->T:W-1(V619_D-1) adding edge: AGTCCACCAC...CACATGATGC:W4(V549_D-1) to T:W-1(V619_D-1) removing edge Edge(618->619,w:6.0)(C:W-1(V618_D-1)->T:W-1(V619_D-1)) removing edge Edge(549->618,w:6.0)(AGTCCACCAC...CACATGATGC:W4(V549_D-1)->C:W-1(V618_D-1)) Found potential edge: Edge(549->619,w:6.0) between AGTCCACCAC...CACATGATGC:W4(V549_D-1) and T:W-1(V619_D-1) removing vertex T:W-1(V619_D-1) was concatenated into AGTCCACCAC...ACATGATGCT:W4(V549_D-1) Want to move edge Edge(619->620,w:4.0)(T:W-1(V619_D-1)->T:W-1(V620_D-1)) to (AGTCCACCAC...ACATGATGCT:W4(V549_D-1)->T:W-1(V620_D-1) adding edge: AGTCCACCAC...ACATGATGCT:W4(V549_D-1) to T:W-1(V620_D-1) removing edge Edge(619->620,w:4.0)(T:W-1(V619_D-1)->T:W-1(V620_D-1)) removing edge Edge(549->619,w:6.0)(AGTCCACCAC...ACATGATGCT:W4(V549_D-1)->T:W-1(V619_D-1)) Found potential edge: Edge(549->620,w:4.0) between AGTCCACCAC...ACATGATGCT:W4(V549_D-1) and T:W-1(V620_D-1) removing vertex T:W-1(V620_D-1) was concatenated into AGTCCACCAC...CATGATGCTT:W4(V549_D-1) Want to move edge Edge(620->621,w:4.0)(T:W-1(V620_D-1)->G:W-1(V621_D-1)) to (AGTCCACCAC...CATGATGCTT:W4(V549_D-1)->G:W-1(V621_D-1) adding edge: AGTCCACCAC...CATGATGCTT:W4(V549_D-1) to G:W-1(V621_D-1) removing edge Edge(620->621,w:4.0)(T:W-1(V620_D-1)->G:W-1(V621_D-1)) removing edge Edge(549->620,w:4.0)(AGTCCACCAC...CATGATGCTT:W4(V549_D-1)->T:W-1(V620_D-1)) Found potential edge: Edge(549->621,w:4.0) between AGTCCACCAC...CATGATGCTT:W4(V549_D-1) and G:W-1(V621_D-1) removing vertex G:W-1(V621_D-1) was concatenated into AGTCCACCAC...ATGATGCTTG:W4(V549_D-1) Want to move edge Edge(621->622,w:4.0)(G:W-1(V621_D-1)->G:W-1(V622_D-1)) to (AGTCCACCAC...ATGATGCTTG:W4(V549_D-1)->G:W-1(V622_D-1) adding edge: AGTCCACCAC...ATGATGCTTG:W4(V549_D-1) to G:W-1(V622_D-1) removing edge Edge(621->622,w:4.0)(G:W-1(V621_D-1)->G:W-1(V622_D-1)) removing edge Edge(549->621,w:4.0)(AGTCCACCAC...ATGATGCTTG:W4(V549_D-1)->G:W-1(V621_D-1)) Found potential edge: Edge(549->622,w:4.0) between AGTCCACCAC...ATGATGCTTG:W4(V549_D-1) and G:W-1(V622_D-1) removing vertex G:W-1(V622_D-1) was concatenated into AGTCCACCAC...TGATGCTTGG:W4(V549_D-1) Want to move edge Edge(622->623,w:4.0)(G:W-1(V622_D-1)->T:W-1(V623_D-1)) to (AGTCCACCAC...TGATGCTTGG:W4(V549_D-1)->T:W-1(V623_D-1) adding edge: AGTCCACCAC...TGATGCTTGG:W4(V549_D-1) to T:W-1(V623_D-1) removing edge Edge(622->623,w:4.0)(G:W-1(V622_D-1)->T:W-1(V623_D-1)) removing edge Edge(549->622,w:4.0)(AGTCCACCAC...TGATGCTTGG:W4(V549_D-1)->G:W-1(V622_D-1)) Found potential edge: Edge(549->623,w:4.0) between AGTCCACCAC...TGATGCTTGG:W4(V549_D-1) and T:W-1(V623_D-1) removing vertex T:W-1(V623_D-1) was concatenated into AGTCCACCAC...GATGCTTGGT:W4(V549_D-1) Want to move edge Edge(623->624,w:4.0)(T:W-1(V623_D-1)->T:W-1(V624_D-1)) to (AGTCCACCAC...GATGCTTGGT:W4(V549_D-1)->T:W-1(V624_D-1) adding edge: AGTCCACCAC...GATGCTTGGT:W4(V549_D-1) to T:W-1(V624_D-1) removing edge Edge(623->624,w:4.0)(T:W-1(V623_D-1)->T:W-1(V624_D-1)) removing edge Edge(549->623,w:4.0)(AGTCCACCAC...GATGCTTGGT:W4(V549_D-1)->T:W-1(V623_D-1)) Found potential edge: Edge(549->624,w:4.0) between AGTCCACCAC...GATGCTTGGT:W4(V549_D-1) and T:W-1(V624_D-1) removing vertex T:W-1(V624_D-1) was concatenated into AGTCCACCAC...ATGCTTGGTT:W4(V549_D-1) Want to move edge Edge(624->625,w:4.0)(T:W-1(V624_D-1)->A:W-1(V625_D-1)) to (AGTCCACCAC...ATGCTTGGTT:W4(V549_D-1)->A:W-1(V625_D-1) adding edge: AGTCCACCAC...ATGCTTGGTT:W4(V549_D-1) to A:W-1(V625_D-1) removing edge Edge(624->625,w:4.0)(T:W-1(V624_D-1)->A:W-1(V625_D-1)) removing edge Edge(549->624,w:4.0)(AGTCCACCAC...ATGCTTGGTT:W4(V549_D-1)->T:W-1(V624_D-1)) Found potential edge: Edge(549->625,w:4.0) between AGTCCACCAC...ATGCTTGGTT:W4(V549_D-1) and A:W-1(V625_D-1) removing vertex A:W-1(V625_D-1) was concatenated into AGTCCACCAC...TGCTTGGTTA:W4(V549_D-1) Want to move edge Edge(625->626,w:4.0)(A:W-1(V625_D-1)->A:W-1(V626_D-1)) to (AGTCCACCAC...TGCTTGGTTA:W4(V549_D-1)->A:W-1(V626_D-1) adding edge: AGTCCACCAC...TGCTTGGTTA:W4(V549_D-1) to A:W-1(V626_D-1) removing edge Edge(625->626,w:4.0)(A:W-1(V625_D-1)->A:W-1(V626_D-1)) removing edge Edge(549->625,w:4.0)(AGTCCACCAC...TGCTTGGTTA:W4(V549_D-1)->A:W-1(V625_D-1)) Found potential edge: Edge(549->626,w:4.0) between AGTCCACCAC...TGCTTGGTTA:W4(V549_D-1) and A:W-1(V626_D-1) removing vertex A:W-1(V626_D-1) was concatenated into AGTCCACCAC...GCTTGGTTAA:W4(V549_D-1) Want to move edge Edge(626->627,w:4.0)(A:W-1(V626_D-1)->G:W-1(V627_D-1)) to (AGTCCACCAC...GCTTGGTTAA:W4(V549_D-1)->G:W-1(V627_D-1) adding edge: AGTCCACCAC...GCTTGGTTAA:W4(V549_D-1) to G:W-1(V627_D-1) removing edge Edge(626->627,w:4.0)(A:W-1(V626_D-1)->G:W-1(V627_D-1)) removing edge Edge(549->626,w:4.0)(AGTCCACCAC...GCTTGGTTAA:W4(V549_D-1)->A:W-1(V626_D-1)) Found potential edge: Edge(549->627,w:4.0) between AGTCCACCAC...GCTTGGTTAA:W4(V549_D-1) and G:W-1(V627_D-1) removing vertex G:W-1(V627_D-1) was concatenated into AGTCCACCAC...CTTGGTTAAG:W4(V549_D-1) Want to move edge Edge(627->628,w:4.0)(G:W-1(V627_D-1)->A:W-1(V628_D-1)) to (AGTCCACCAC...CTTGGTTAAG:W4(V549_D-1)->A:W-1(V628_D-1) adding edge: AGTCCACCAC...CTTGGTTAAG:W4(V549_D-1) to A:W-1(V628_D-1) removing edge Edge(627->628,w:4.0)(G:W-1(V627_D-1)->A:W-1(V628_D-1)) removing edge Edge(549->627,w:4.0)(AGTCCACCAC...CTTGGTTAAG:W4(V549_D-1)->G:W-1(V627_D-1)) Found potential edge: Edge(549->628,w:4.0) between AGTCCACCAC...CTTGGTTAAG:W4(V549_D-1) and A:W-1(V628_D-1) removing vertex A:W-1(V628_D-1) was concatenated into AGTCCACCAC...TTGGTTAAGA:W4(V549_D-1) Want to move edge Edge(628->629,w:4.0)(A:W-1(V628_D-1)->C:W-1(V629_D-1)) to (AGTCCACCAC...TTGGTTAAGA:W4(V549_D-1)->C:W-1(V629_D-1) adding edge: AGTCCACCAC...TTGGTTAAGA:W4(V549_D-1) to C:W-1(V629_D-1) removing edge Edge(628->629,w:4.0)(A:W-1(V628_D-1)->C:W-1(V629_D-1)) removing edge Edge(549->628,w:4.0)(AGTCCACCAC...TTGGTTAAGA:W4(V549_D-1)->A:W-1(V628_D-1)) Found potential edge: Edge(549->629,w:4.0) between AGTCCACCAC...TTGGTTAAGA:W4(V549_D-1) and C:W-1(V629_D-1) removing vertex C:W-1(V629_D-1) was concatenated into AGTCCACCAC...TGGTTAAGAC:W4(V549_D-1) Want to move edge Edge(629->630,w:4.0)(C:W-1(V629_D-1)->A:W-1(V630_D-1)) to (AGTCCACCAC...TGGTTAAGAC:W4(V549_D-1)->A:W-1(V630_D-1) adding edge: AGTCCACCAC...TGGTTAAGAC:W4(V549_D-1) to A:W-1(V630_D-1) removing edge Edge(629->630,w:4.0)(C:W-1(V629_D-1)->A:W-1(V630_D-1)) removing edge Edge(549->629,w:4.0)(AGTCCACCAC...TGGTTAAGAC:W4(V549_D-1)->C:W-1(V629_D-1)) Found potential edge: Edge(549->630,w:4.0) between AGTCCACCAC...TGGTTAAGAC:W4(V549_D-1) and A:W-1(V630_D-1) removing vertex A:W-1(V630_D-1) was concatenated into AGTCCACCAC...GGTTAAGACA:W4(V549_D-1) Want to move edge Edge(630->631,w:4.0)(A:W-1(V630_D-1)->A:W-1(V631_D-1)) to (AGTCCACCAC...GGTTAAGACA:W4(V549_D-1)->A:W-1(V631_D-1) adding edge: AGTCCACCAC...GGTTAAGACA:W4(V549_D-1) to A:W-1(V631_D-1) removing edge Edge(630->631,w:4.0)(A:W-1(V630_D-1)->A:W-1(V631_D-1)) removing edge Edge(549->630,w:4.0)(AGTCCACCAC...GGTTAAGACA:W4(V549_D-1)->A:W-1(V630_D-1)) Found potential edge: Edge(549->631,w:4.0) between AGTCCACCAC...GGTTAAGACA:W4(V549_D-1) and A:W-1(V631_D-1) removing vertex A:W-1(V631_D-1) was concatenated into AGTCCACCAC...GTTAAGACAA:W4(V549_D-1) Want to move edge Edge(631->632,w:6.0)(A:W-1(V631_D-1)->G:W-1(V632_D-1)) to (AGTCCACCAC...GTTAAGACAA:W4(V549_D-1)->G:W-1(V632_D-1) adding edge: AGTCCACCAC...GTTAAGACAA:W4(V549_D-1) to G:W-1(V632_D-1) removing edge Edge(631->632,w:6.0)(A:W-1(V631_D-1)->G:W-1(V632_D-1)) removing edge Edge(549->631,w:4.0)(AGTCCACCAC...GTTAAGACAA:W4(V549_D-1)->A:W-1(V631_D-1)) Found potential edge: Edge(549->632,w:6.0) between AGTCCACCAC...GTTAAGACAA:W4(V549_D-1) and G:W-1(V632_D-1) removing vertex G:W-1(V632_D-1) was concatenated into AGTCCACCAC...TTAAGACAAG:W4(V549_D-1) Want to move edge Edge(632->633,w:6.0)(G:W-1(V632_D-1)->G:W-1(V633_D-1)) to (AGTCCACCAC...TTAAGACAAG:W4(V549_D-1)->G:W-1(V633_D-1) adding edge: AGTCCACCAC...TTAAGACAAG:W4(V549_D-1) to G:W-1(V633_D-1) removing edge Edge(632->633,w:6.0)(G:W-1(V632_D-1)->G:W-1(V633_D-1)) removing edge Edge(549->632,w:6.0)(AGTCCACCAC...TTAAGACAAG:W4(V549_D-1)->G:W-1(V632_D-1)) Found potential edge: Edge(549->633,w:6.0) between AGTCCACCAC...TTAAGACAAG:W4(V549_D-1) and G:W-1(V633_D-1) removing vertex G:W-1(V633_D-1) was concatenated into AGTCCACCAC...TAAGACAAGG:W4(V549_D-1) Want to move edge Edge(633->634,w:6.0)(G:W-1(V633_D-1)->G:W-1(V634_D-1)) to (AGTCCACCAC...TAAGACAAGG:W4(V549_D-1)->G:W-1(V634_D-1) adding edge: AGTCCACCAC...TAAGACAAGG:W4(V549_D-1) to G:W-1(V634_D-1) removing edge Edge(633->634,w:6.0)(G:W-1(V633_D-1)->G:W-1(V634_D-1)) removing edge Edge(549->633,w:6.0)(AGTCCACCAC...TAAGACAAGG:W4(V549_D-1)->G:W-1(V633_D-1)) Found potential edge: Edge(549->634,w:6.0) between AGTCCACCAC...TAAGACAAGG:W4(V549_D-1) and G:W-1(V634_D-1) removing vertex G:W-1(V634_D-1) was concatenated into AGTCCACCAC...AAGACAAGGG:W4(V549_D-1) Want to move edge Edge(634->635,w:6.0)(G:W-1(V634_D-1)->G:W-1(V635_D-1)) to (AGTCCACCAC...AAGACAAGGG:W4(V549_D-1)->G:W-1(V635_D-1) adding edge: AGTCCACCAC...AAGACAAGGG:W4(V549_D-1) to G:W-1(V635_D-1) removing edge Edge(634->635,w:6.0)(G:W-1(V634_D-1)->G:W-1(V635_D-1)) removing edge Edge(549->634,w:6.0)(AGTCCACCAC...AAGACAAGGG:W4(V549_D-1)->G:W-1(V634_D-1)) Found potential edge: Edge(549->635,w:6.0) between AGTCCACCAC...AAGACAAGGG:W4(V549_D-1) and G:W-1(V635_D-1) removing vertex G:W-1(V635_D-1) was concatenated into AGTCCACCAC...AGACAAGGGG:W4(V549_D-1) Want to move edge Edge(635->636,w:6.0)(G:W-1(V635_D-1)->T:W-1(V636_D-1)) to (AGTCCACCAC...AGACAAGGGG:W4(V549_D-1)->T:W-1(V636_D-1) adding edge: AGTCCACCAC...AGACAAGGGG:W4(V549_D-1) to T:W-1(V636_D-1) removing edge Edge(635->636,w:6.0)(G:W-1(V635_D-1)->T:W-1(V636_D-1)) removing edge Edge(549->635,w:6.0)(AGTCCACCAC...AGACAAGGGG:W4(V549_D-1)->G:W-1(V635_D-1)) Found potential edge: Edge(549->636,w:6.0) between AGTCCACCAC...AGACAAGGGG:W4(V549_D-1) and T:W-1(V636_D-1) removing vertex T:W-1(V636_D-1) was concatenated into AGTCCACCAC...GACAAGGGGT:W4(V549_D-1) Want to move edge Edge(636->637,w:6.0)(T:W-1(V636_D-1)->T:W-1(V637_D-1)) to (AGTCCACCAC...GACAAGGGGT:W4(V549_D-1)->T:W-1(V637_D-1) adding edge: AGTCCACCAC...GACAAGGGGT:W4(V549_D-1) to T:W-1(V637_D-1) removing edge Edge(636->637,w:6.0)(T:W-1(V636_D-1)->T:W-1(V637_D-1)) removing edge Edge(549->636,w:6.0)(AGTCCACCAC...GACAAGGGGT:W4(V549_D-1)->T:W-1(V636_D-1)) Found potential edge: Edge(549->637,w:6.0) between AGTCCACCAC...GACAAGGGGT:W4(V549_D-1) and T:W-1(V637_D-1) removing vertex T:W-1(V637_D-1) was concatenated into AGTCCACCAC...ACAAGGGGTT:W4(V549_D-1) Want to move edge Edge(637->638,w:6.0)(T:W-1(V637_D-1)->A:W-1(V638_D-1)) to (AGTCCACCAC...ACAAGGGGTT:W4(V549_D-1)->A:W-1(V638_D-1) adding edge: AGTCCACCAC...ACAAGGGGTT:W4(V549_D-1) to A:W-1(V638_D-1) removing edge Edge(637->638,w:6.0)(T:W-1(V637_D-1)->A:W-1(V638_D-1)) removing edge Edge(549->637,w:6.0)(AGTCCACCAC...ACAAGGGGTT:W4(V549_D-1)->T:W-1(V637_D-1)) Found potential edge: Edge(549->638,w:6.0) between AGTCCACCAC...ACAAGGGGTT:W4(V549_D-1) and A:W-1(V638_D-1) removing vertex A:W-1(V638_D-1) was concatenated into AGTCCACCAC...CAAGGGGTTA:W4(V549_D-1) Want to move edge Edge(638->639,w:6.0)(A:W-1(V638_D-1)->G:W-1(V639_D-1)) to (AGTCCACCAC...CAAGGGGTTA:W4(V549_D-1)->G:W-1(V639_D-1) adding edge: AGTCCACCAC...CAAGGGGTTA:W4(V549_D-1) to G:W-1(V639_D-1) removing edge Edge(638->639,w:6.0)(A:W-1(V638_D-1)->G:W-1(V639_D-1)) removing edge Edge(549->638,w:6.0)(AGTCCACCAC...CAAGGGGTTA:W4(V549_D-1)->A:W-1(V638_D-1)) Found potential edge: Edge(549->639,w:6.0) between AGTCCACCAC...CAAGGGGTTA:W4(V549_D-1) and G:W-1(V639_D-1) removing vertex G:W-1(V639_D-1) was concatenated into AGTCCACCAC...AAGGGGTTAG:W4(V549_D-1) Want to move edge Edge(639->640,w:8.0)(G:W-1(V639_D-1)->T:W-1(V640_D-1)) to (AGTCCACCAC...AAGGGGTTAG:W4(V549_D-1)->T:W-1(V640_D-1) adding edge: AGTCCACCAC...AAGGGGTTAG:W4(V549_D-1) to T:W-1(V640_D-1) removing edge Edge(639->640,w:8.0)(G:W-1(V639_D-1)->T:W-1(V640_D-1)) removing edge Edge(549->639,w:6.0)(AGTCCACCAC...AAGGGGTTAG:W4(V549_D-1)->G:W-1(V639_D-1)) Found potential edge: Edge(549->640,w:8.0) between AGTCCACCAC...AAGGGGTTAG:W4(V549_D-1) and T:W-1(V640_D-1) removing vertex T:W-1(V640_D-1) was concatenated into AGTCCACCAC...AGGGGTTAGT:W4(V549_D-1) Want to move edge Edge(640->641,w:8.0)(T:W-1(V640_D-1)->G:W-1(V641_D-1)) to (AGTCCACCAC...AGGGGTTAGT:W4(V549_D-1)->G:W-1(V641_D-1) adding edge: AGTCCACCAC...AGGGGTTAGT:W4(V549_D-1) to G:W-1(V641_D-1) removing edge Edge(640->641,w:8.0)(T:W-1(V640_D-1)->G:W-1(V641_D-1)) removing edge Edge(549->640,w:8.0)(AGTCCACCAC...AGGGGTTAGT:W4(V549_D-1)->T:W-1(V640_D-1)) Found potential edge: Edge(549->641,w:8.0) between AGTCCACCAC...AGGGGTTAGT:W4(V549_D-1) and G:W-1(V641_D-1) removing vertex G:W-1(V641_D-1) was concatenated into AGTCCACCAC...GGGGTTAGTG:W4(V549_D-1) Want to move edge Edge(641->642,w:8.0)(G:W-1(V641_D-1)->A:W-1(V642_D-1)) to (AGTCCACCAC...GGGGTTAGTG:W4(V549_D-1)->A:W-1(V642_D-1) adding edge: AGTCCACCAC...GGGGTTAGTG:W4(V549_D-1) to A:W-1(V642_D-1) removing edge Edge(641->642,w:8.0)(G:W-1(V641_D-1)->A:W-1(V642_D-1)) removing edge Edge(549->641,w:8.0)(AGTCCACCAC...GGGGTTAGTG:W4(V549_D-1)->G:W-1(V641_D-1)) Found potential edge: Edge(549->642,w:8.0) between AGTCCACCAC...GGGGTTAGTG:W4(V549_D-1) and A:W-1(V642_D-1) removing vertex A:W-1(V642_D-1) was concatenated into AGTCCACCAC...GGGTTAGTGA:W4(V549_D-1) Want to move edge Edge(642->643,w:8.0)(A:W-1(V642_D-1)->C:W-1(V643_D-1)) to (AGTCCACCAC...GGGTTAGTGA:W4(V549_D-1)->C:W-1(V643_D-1) adding edge: AGTCCACCAC...GGGTTAGTGA:W4(V549_D-1) to C:W-1(V643_D-1) removing edge Edge(642->643,w:8.0)(A:W-1(V642_D-1)->C:W-1(V643_D-1)) removing edge Edge(549->642,w:8.0)(AGTCCACCAC...GGGTTAGTGA:W4(V549_D-1)->A:W-1(V642_D-1)) Found potential edge: Edge(549->643,w:8.0) between AGTCCACCAC...GGGTTAGTGA:W4(V549_D-1) and C:W-1(V643_D-1) removing vertex C:W-1(V643_D-1) was concatenated into AGTCCACCAC...GGTTAGTGAC:W4(V549_D-1) Want to move edge Edge(643->644,w:8.0)(C:W-1(V643_D-1)->A:W-1(V644_D-1)) to (AGTCCACCAC...GGTTAGTGAC:W4(V549_D-1)->A:W-1(V644_D-1) adding edge: AGTCCACCAC...GGTTAGTGAC:W4(V549_D-1) to A:W-1(V644_D-1) removing edge Edge(643->644,w:8.0)(C:W-1(V643_D-1)->A:W-1(V644_D-1)) removing edge Edge(549->643,w:8.0)(AGTCCACCAC...GGTTAGTGAC:W4(V549_D-1)->C:W-1(V643_D-1)) Found potential edge: Edge(549->644,w:8.0) between AGTCCACCAC...GGTTAGTGAC:W4(V549_D-1) and A:W-1(V644_D-1) removing vertex A:W-1(V644_D-1) was concatenated into AGTCCACCAC...GTTAGTGACA:W4(V549_D-1) Want to move edge Edge(644->645,w:8.0)(A:W-1(V644_D-1)->A:W-1(V645_D-1)) to (AGTCCACCAC...GTTAGTGACA:W4(V549_D-1)->A:W-1(V645_D-1) adding edge: AGTCCACCAC...GTTAGTGACA:W4(V549_D-1) to A:W-1(V645_D-1) removing edge Edge(644->645,w:8.0)(A:W-1(V644_D-1)->A:W-1(V645_D-1)) removing edge Edge(549->644,w:8.0)(AGTCCACCAC...GTTAGTGACA:W4(V549_D-1)->A:W-1(V644_D-1)) Found potential edge: Edge(549->645,w:8.0) between AGTCCACCAC...GTTAGTGACA:W4(V549_D-1) and A:W-1(V645_D-1) removing vertex A:W-1(V645_D-1) was concatenated into AGTCCACCAC...TTAGTGACAA:W4(V549_D-1) Want to move edge Edge(645->646,w:8.0)(A:W-1(V645_D-1)->A:W-1(V646_D-1)) to (AGTCCACCAC...TTAGTGACAA:W4(V549_D-1)->A:W-1(V646_D-1) adding edge: AGTCCACCAC...TTAGTGACAA:W4(V549_D-1) to A:W-1(V646_D-1) removing edge Edge(645->646,w:8.0)(A:W-1(V645_D-1)->A:W-1(V646_D-1)) removing edge Edge(549->645,w:8.0)(AGTCCACCAC...TTAGTGACAA:W4(V549_D-1)->A:W-1(V645_D-1)) Found potential edge: Edge(549->646,w:8.0) between AGTCCACCAC...TTAGTGACAA:W4(V549_D-1) and A:W-1(V646_D-1) removing vertex A:W-1(V646_D-1) was concatenated into AGTCCACCAC...TAGTGACAAA:W4(V549_D-1) Want to move edge Edge(646->647,w:8.0)(A:W-1(V646_D-1)->G:W-1(V647_D-1)) to (AGTCCACCAC...TAGTGACAAA:W4(V549_D-1)->G:W-1(V647_D-1) adding edge: AGTCCACCAC...TAGTGACAAA:W4(V549_D-1) to G:W-1(V647_D-1) removing edge Edge(646->647,w:8.0)(A:W-1(V646_D-1)->G:W-1(V647_D-1)) removing edge Edge(549->646,w:8.0)(AGTCCACCAC...TAGTGACAAA:W4(V549_D-1)->A:W-1(V646_D-1)) Found potential edge: Edge(549->647,w:8.0) between AGTCCACCAC...TAGTGACAAA:W4(V549_D-1) and G:W-1(V647_D-1) removing vertex G:W-1(V647_D-1) was concatenated into AGTCCACCAC...AGTGACAAAG:W4(V549_D-1) Want to move edge Edge(647->648,w:8.0)(G:W-1(V647_D-1)->T:W-1(V648_D-1)) to (AGTCCACCAC...AGTGACAAAG:W4(V549_D-1)->T:W-1(V648_D-1) adding edge: AGTCCACCAC...AGTGACAAAG:W4(V549_D-1) to T:W-1(V648_D-1) removing edge Edge(647->648,w:8.0)(G:W-1(V647_D-1)->T:W-1(V648_D-1)) removing edge Edge(549->647,w:8.0)(AGTCCACCAC...AGTGACAAAG:W4(V549_D-1)->G:W-1(V647_D-1)) Found potential edge: Edge(549->648,w:8.0) between AGTCCACCAC...AGTGACAAAG:W4(V549_D-1) and T:W-1(V648_D-1) removing vertex T:W-1(V648_D-1) was concatenated into AGTCCACCAC...GTGACAAAGT:W4(V549_D-1) Want to move edge Edge(648->649,w:8.0)(T:W-1(V648_D-1)->A:W-1(V649_D-1)) to (AGTCCACCAC...GTGACAAAGT:W4(V549_D-1)->A:W-1(V649_D-1) adding edge: AGTCCACCAC...GTGACAAAGT:W4(V549_D-1) to A:W-1(V649_D-1) removing edge Edge(648->649,w:8.0)(T:W-1(V648_D-1)->A:W-1(V649_D-1)) removing edge Edge(549->648,w:8.0)(AGTCCACCAC...GTGACAAAGT:W4(V549_D-1)->T:W-1(V648_D-1)) Found potential edge: Edge(549->649,w:8.0) between AGTCCACCAC...GTGACAAAGT:W4(V549_D-1) and A:W-1(V649_D-1) removing vertex A:W-1(V649_D-1) was concatenated into AGTCCACCAC...TGACAAAGTA:W4(V549_D-1) Want to move edge Edge(649->650,w:8.0)(A:W-1(V649_D-1)->A:W-1(V650_D-1)) to (AGTCCACCAC...TGACAAAGTA:W4(V549_D-1)->A:W-1(V650_D-1) adding edge: AGTCCACCAC...TGACAAAGTA:W4(V549_D-1) to A:W-1(V650_D-1) removing edge Edge(649->650,w:8.0)(A:W-1(V649_D-1)->A:W-1(V650_D-1)) removing edge Edge(549->649,w:8.0)(AGTCCACCAC...TGACAAAGTA:W4(V549_D-1)->A:W-1(V649_D-1)) Found potential edge: Edge(549->650,w:8.0) between AGTCCACCAC...TGACAAAGTA:W4(V549_D-1) and A:W-1(V650_D-1) removing vertex A:W-1(V650_D-1) was concatenated into AGTCCACCAC...GACAAAGTAA:W4(V549_D-1) Want to move edge Edge(650->651,w:8.0)(A:W-1(V650_D-1)->A:W-1(V651_D-1)) to (AGTCCACCAC...GACAAAGTAA:W4(V549_D-1)->A:W-1(V651_D-1) adding edge: AGTCCACCAC...GACAAAGTAA:W4(V549_D-1) to A:W-1(V651_D-1) removing edge Edge(650->651,w:8.0)(A:W-1(V650_D-1)->A:W-1(V651_D-1)) removing edge Edge(549->650,w:8.0)(AGTCCACCAC...GACAAAGTAA:W4(V549_D-1)->A:W-1(V650_D-1)) Found potential edge: Edge(549->651,w:8.0) between AGTCCACCAC...GACAAAGTAA:W4(V549_D-1) and A:W-1(V651_D-1) removing vertex A:W-1(V651_D-1) was concatenated into AGTCCACCAC...ACAAAGTAAA:W5(V549_D-1) Want to move edge Edge(651->652,w:8.0)(A:W-1(V651_D-1)->G:W-1(V652_D-1)) to (AGTCCACCAC...ACAAAGTAAA:W5(V549_D-1)->G:W-1(V652_D-1) adding edge: AGTCCACCAC...ACAAAGTAAA:W5(V549_D-1) to G:W-1(V652_D-1) removing edge Edge(651->652,w:8.0)(A:W-1(V651_D-1)->G:W-1(V652_D-1)) removing edge Edge(549->651,w:8.0)(AGTCCACCAC...ACAAAGTAAA:W5(V549_D-1)->A:W-1(V651_D-1)) Found potential edge: Edge(549->652,w:8.0) between AGTCCACCAC...ACAAAGTAAA:W5(V549_D-1) and G:W-1(V652_D-1) removing vertex G:W-1(V652_D-1) was concatenated into AGTCCACCAC...CAAAGTAAAG:W5(V549_D-1) Want to move edge Edge(652->653,w:8.0)(G:W-1(V652_D-1)->A:W-1(V653_D-1)) to (AGTCCACCAC...CAAAGTAAAG:W5(V549_D-1)->A:W-1(V653_D-1) adding edge: AGTCCACCAC...CAAAGTAAAG:W5(V549_D-1) to A:W-1(V653_D-1) removing edge Edge(652->653,w:8.0)(G:W-1(V652_D-1)->A:W-1(V653_D-1)) removing edge Edge(549->652,w:8.0)(AGTCCACCAC...CAAAGTAAAG:W5(V549_D-1)->G:W-1(V652_D-1)) Found potential edge: Edge(549->653,w:8.0) between AGTCCACCAC...CAAAGTAAAG:W5(V549_D-1) and A:W-1(V653_D-1) removing vertex A:W-1(V653_D-1) was concatenated into AGTCCACCAC...AAAGTAAAGA:W5(V549_D-1) Want to move edge Edge(653->654,w:8.0)(A:W-1(V653_D-1)->G:W-1(V654_D-1)) to (AGTCCACCAC...AAAGTAAAGA:W5(V549_D-1)->G:W-1(V654_D-1) adding edge: AGTCCACCAC...AAAGTAAAGA:W5(V549_D-1) to G:W-1(V654_D-1) removing edge Edge(653->654,w:8.0)(A:W-1(V653_D-1)->G:W-1(V654_D-1)) removing edge Edge(549->653,w:8.0)(AGTCCACCAC...AAAGTAAAGA:W5(V549_D-1)->A:W-1(V653_D-1)) Found potential edge: Edge(549->654,w:8.0) between AGTCCACCAC...AAAGTAAAGA:W5(V549_D-1) and G:W-1(V654_D-1) removing vertex G:W-1(V654_D-1) was concatenated into AGTCCACCAC...AAGTAAAGAG:W5(V549_D-1) Want to move edge Edge(654->655,w:10.0)(G:W-1(V654_D-1)->G:W-1(V655_D-1)) to (AGTCCACCAC...AAGTAAAGAG:W5(V549_D-1)->G:W-1(V655_D-1) adding edge: AGTCCACCAC...AAGTAAAGAG:W5(V549_D-1) to G:W-1(V655_D-1) removing edge Edge(654->655,w:10.0)(G:W-1(V654_D-1)->G:W-1(V655_D-1)) removing edge Edge(549->654,w:8.0)(AGTCCACCAC...AAGTAAAGAG:W5(V549_D-1)->G:W-1(V654_D-1)) Found potential edge: Edge(549->655,w:10.0) between AGTCCACCAC...AAGTAAAGAG:W5(V549_D-1) and G:W-1(V655_D-1) removing vertex G:W-1(V655_D-1) was concatenated into AGTCCACCAC...AGTAAAGAGG:W5(V549_D-1) Want to move edge Edge(655->656,w:10.0)(G:W-1(V655_D-1)->A:W-1(V656_D-1)) to (AGTCCACCAC...AGTAAAGAGG:W5(V549_D-1)->A:W-1(V656_D-1) adding edge: AGTCCACCAC...AGTAAAGAGG:W5(V549_D-1) to A:W-1(V656_D-1) removing edge Edge(655->656,w:10.0)(G:W-1(V655_D-1)->A:W-1(V656_D-1)) removing edge Edge(549->655,w:10.0)(AGTCCACCAC...AGTAAAGAGG:W5(V549_D-1)->G:W-1(V655_D-1)) Found potential edge: Edge(549->656,w:10.0) between AGTCCACCAC...AGTAAAGAGG:W5(V549_D-1) and A:W-1(V656_D-1) removing vertex A:W-1(V656_D-1) was concatenated into AGTCCACCAC...GTAAAGAGGA:W5(V549_D-1) Want to move edge Edge(656->657,w:10.0)(A:W-1(V656_D-1)->T:W-1(V657_D-1)) to (AGTCCACCAC...GTAAAGAGGA:W5(V549_D-1)->T:W-1(V657_D-1) adding edge: AGTCCACCAC...GTAAAGAGGA:W5(V549_D-1) to T:W-1(V657_D-1) removing edge Edge(656->657,w:10.0)(A:W-1(V656_D-1)->T:W-1(V657_D-1)) removing edge Edge(549->656,w:10.0)(AGTCCACCAC...GTAAAGAGGA:W5(V549_D-1)->A:W-1(V656_D-1)) Found potential edge: Edge(549->657,w:10.0) between AGTCCACCAC...GTAAAGAGGA:W5(V549_D-1) and T:W-1(V657_D-1) removing vertex T:W-1(V657_D-1) was concatenated into AGTCCACCAC...TAAAGAGGAT:W5(V549_D-1) Want to move edge Edge(657->658,w:12.0)(T:W-1(V657_D-1)->G:W-1(V658_D-1)) to (AGTCCACCAC...TAAAGAGGAT:W5(V549_D-1)->G:W-1(V658_D-1) adding edge: AGTCCACCAC...TAAAGAGGAT:W5(V549_D-1) to G:W-1(V658_D-1) removing edge Edge(657->658,w:12.0)(T:W-1(V657_D-1)->G:W-1(V658_D-1)) removing edge Edge(549->657,w:10.0)(AGTCCACCAC...TAAAGAGGAT:W5(V549_D-1)->T:W-1(V657_D-1)) Found potential edge: Edge(549->658,w:12.0) between AGTCCACCAC...TAAAGAGGAT:W5(V549_D-1) and G:W-1(V658_D-1) removing vertex G:W-1(V658_D-1) was concatenated into AGTCCACCAC...AAAGAGGATG:W5(V549_D-1) Want to move edge Edge(658->659,w:10.0)(G:W-1(V658_D-1)->A:W-1(V659_D-1)) to (AGTCCACCAC...AAAGAGGATG:W5(V549_D-1)->A:W-1(V659_D-1) adding edge: AGTCCACCAC...AAAGAGGATG:W5(V549_D-1) to A:W-1(V659_D-1) removing edge Edge(658->659,w:10.0)(G:W-1(V658_D-1)->A:W-1(V659_D-1)) removing edge Edge(549->658,w:12.0)(AGTCCACCAC...AAAGAGGATG:W5(V549_D-1)->G:W-1(V658_D-1)) Found potential edge: Edge(549->659,w:10.0) between AGTCCACCAC...AAAGAGGATG:W5(V549_D-1) and A:W-1(V659_D-1) removing vertex A:W-1(V659_D-1) was concatenated into AGTCCACCAC...AAGAGGATGA:W5(V549_D-1) Want to move edge Edge(659->660,w:10.0)(A:W-1(V659_D-1)->C:W-1(V660_D-1)) to (AGTCCACCAC...AAGAGGATGA:W5(V549_D-1)->C:W-1(V660_D-1) adding edge: AGTCCACCAC...AAGAGGATGA:W5(V549_D-1) to C:W-1(V660_D-1) removing edge Edge(659->660,w:10.0)(A:W-1(V659_D-1)->C:W-1(V660_D-1)) removing edge Edge(549->659,w:10.0)(AGTCCACCAC...AAGAGGATGA:W5(V549_D-1)->A:W-1(V659_D-1)) Found potential edge: Edge(549->660,w:10.0) between AGTCCACCAC...AAGAGGATGA:W5(V549_D-1) and C:W-1(V660_D-1) removing vertex C:W-1(V660_D-1) was concatenated into AGTCCACCAC...AGAGGATGAC:W5(V549_D-1) Want to move edge Edge(660->661,w:10.0)(C:W-1(V660_D-1)->A:W-1(V661_D-1)) to (AGTCCACCAC...AGAGGATGAC:W5(V549_D-1)->A:W-1(V661_D-1) adding edge: AGTCCACCAC...AGAGGATGAC:W5(V549_D-1) to A:W-1(V661_D-1) removing edge Edge(660->661,w:10.0)(C:W-1(V660_D-1)->A:W-1(V661_D-1)) removing edge Edge(549->660,w:10.0)(AGTCCACCAC...AGAGGATGAC:W5(V549_D-1)->C:W-1(V660_D-1)) Found potential edge: Edge(549->661,w:10.0) between AGTCCACCAC...AGAGGATGAC:W5(V549_D-1) and A:W-1(V661_D-1) removing vertex A:W-1(V661_D-1) was concatenated into AGTCCACCAC...GAGGATGACA:W5(V549_D-1) Want to move edge Edge(661->662,w:10.0)(A:W-1(V661_D-1)->G:W-1(V662_D-1)) to (AGTCCACCAC...GAGGATGACA:W5(V549_D-1)->G:W-1(V662_D-1) adding edge: AGTCCACCAC...GAGGATGACA:W5(V549_D-1) to G:W-1(V662_D-1) removing edge Edge(661->662,w:10.0)(A:W-1(V661_D-1)->G:W-1(V662_D-1)) removing edge Edge(549->661,w:10.0)(AGTCCACCAC...GAGGATGACA:W5(V549_D-1)->A:W-1(V661_D-1)) Found potential edge: Edge(549->662,w:10.0) between AGTCCACCAC...GAGGATGACA:W5(V549_D-1) and G:W-1(V662_D-1) removing vertex G:W-1(V662_D-1) was concatenated into AGTCCACCAC...AGGATGACAG:W5(V549_D-1) Want to move edge Edge(662->663,w:10.0)(G:W-1(V662_D-1)->A:W-1(V663_D-1)) to (AGTCCACCAC...AGGATGACAG:W5(V549_D-1)->A:W-1(V663_D-1) adding edge: AGTCCACCAC...AGGATGACAG:W5(V549_D-1) to A:W-1(V663_D-1) removing edge Edge(662->663,w:10.0)(G:W-1(V662_D-1)->A:W-1(V663_D-1)) removing edge Edge(549->662,w:10.0)(AGTCCACCAC...AGGATGACAG:W5(V549_D-1)->G:W-1(V662_D-1)) Found potential edge: Edge(549->663,w:10.0) between AGTCCACCAC...AGGATGACAG:W5(V549_D-1) and A:W-1(V663_D-1) removing vertex A:W-1(V663_D-1) was concatenated into AGTCCACCAC...GGATGACAGA:W5(V549_D-1) Want to move edge Edge(663->664,w:10.0)(A:W-1(V663_D-1)->C:W-1(V664_D-1)) to (AGTCCACCAC...GGATGACAGA:W5(V549_D-1)->C:W-1(V664_D-1) adding edge: AGTCCACCAC...GGATGACAGA:W5(V549_D-1) to C:W-1(V664_D-1) removing edge Edge(663->664,w:10.0)(A:W-1(V663_D-1)->C:W-1(V664_D-1)) removing edge Edge(549->663,w:10.0)(AGTCCACCAC...GGATGACAGA:W5(V549_D-1)->A:W-1(V663_D-1)) Found potential edge: Edge(549->664,w:10.0) between AGTCCACCAC...GGATGACAGA:W5(V549_D-1) and C:W-1(V664_D-1) removing vertex C:W-1(V664_D-1) was concatenated into AGTCCACCAC...GATGACAGAC:W5(V549_D-1) Want to move edge Edge(664->665,w:8.0)(C:W-1(V664_D-1)->T:W-1(V665_D-1)) to (AGTCCACCAC...GATGACAGAC:W5(V549_D-1)->T:W-1(V665_D-1) adding edge: AGTCCACCAC...GATGACAGAC:W5(V549_D-1) to T:W-1(V665_D-1) removing edge Edge(664->665,w:8.0)(C:W-1(V664_D-1)->T:W-1(V665_D-1)) removing edge Edge(549->664,w:10.0)(AGTCCACCAC...GATGACAGAC:W5(V549_D-1)->C:W-1(V664_D-1)) Found potential edge: Edge(549->665,w:8.0) between AGTCCACCAC...GATGACAGAC:W5(V549_D-1) and T:W-1(V665_D-1) removing vertex T:W-1(V665_D-1) was concatenated into AGTCCACCAC...ATGACAGACT:W5(V549_D-1) Want to move edge Edge(665->666,w:8.0)(T:W-1(V665_D-1)->C:W-1(V666_D-1)) to (AGTCCACCAC...ATGACAGACT:W5(V549_D-1)->C:W-1(V666_D-1) adding edge: AGTCCACCAC...ATGACAGACT:W5(V549_D-1) to C:W-1(V666_D-1) removing edge Edge(665->666,w:8.0)(T:W-1(V665_D-1)->C:W-1(V666_D-1)) removing edge Edge(549->665,w:8.0)(AGTCCACCAC...ATGACAGACT:W5(V549_D-1)->T:W-1(V665_D-1)) Found potential edge: Edge(549->666,w:8.0) between AGTCCACCAC...ATGACAGACT:W5(V549_D-1) and C:W-1(V666_D-1) removing vertex C:W-1(V666_D-1) was concatenated into AGTCCACCAC...TGACAGACTC:W5(V549_D-1) Want to move edge Edge(666->667,w:8.0)(C:W-1(V666_D-1)->T:W-1(V667_D-1)) to (AGTCCACCAC...TGACAGACTC:W5(V549_D-1)->T:W-1(V667_D-1) adding edge: AGTCCACCAC...TGACAGACTC:W5(V549_D-1) to T:W-1(V667_D-1) removing edge Edge(666->667,w:8.0)(C:W-1(V666_D-1)->T:W-1(V667_D-1)) removing edge Edge(549->666,w:8.0)(AGTCCACCAC...TGACAGACTC:W5(V549_D-1)->C:W-1(V666_D-1)) Found potential edge: Edge(549->667,w:8.0) between AGTCCACCAC...TGACAGACTC:W5(V549_D-1) and T:W-1(V667_D-1) removing vertex T:W-1(V667_D-1) was concatenated into AGTCCACCAC...GACAGACTCT:W5(V549_D-1) Want to move edge Edge(667->668,w:8.0)(T:W-1(V667_D-1)->C:W-1(V668_D-1)) to (AGTCCACCAC...GACAGACTCT:W5(V549_D-1)->C:W-1(V668_D-1) adding edge: AGTCCACCAC...GACAGACTCT:W5(V549_D-1) to C:W-1(V668_D-1) removing edge Edge(667->668,w:8.0)(T:W-1(V667_D-1)->C:W-1(V668_D-1)) removing edge Edge(549->667,w:8.0)(AGTCCACCAC...GACAGACTCT:W5(V549_D-1)->T:W-1(V667_D-1)) Found potential edge: Edge(549->668,w:8.0) between AGTCCACCAC...GACAGACTCT:W5(V549_D-1) and C:W-1(V668_D-1) removing vertex C:W-1(V668_D-1) was concatenated into AGTCCACCAC...ACAGACTCTC:W5(V549_D-1) Want to move edge Edge(668->669,w:8.0)(C:W-1(V668_D-1)->T:W-1(V669_D-1)) to (AGTCCACCAC...ACAGACTCTC:W5(V549_D-1)->T:W-1(V669_D-1) adding edge: AGTCCACCAC...ACAGACTCTC:W5(V549_D-1) to T:W-1(V669_D-1) removing edge Edge(668->669,w:8.0)(C:W-1(V668_D-1)->T:W-1(V669_D-1)) removing edge Edge(549->668,w:8.0)(AGTCCACCAC...ACAGACTCTC:W5(V549_D-1)->C:W-1(V668_D-1)) Found potential edge: Edge(549->669,w:8.0) between AGTCCACCAC...ACAGACTCTC:W5(V549_D-1) and T:W-1(V669_D-1) removing vertex T:W-1(V669_D-1) was concatenated into AGTCCACCAC...CAGACTCTCT:W5(V549_D-1) Want to move edge Edge(669->670,w:8.0)(T:W-1(V669_D-1)->A:W-1(V670_D-1)) to (AGTCCACCAC...CAGACTCTCT:W5(V549_D-1)->A:W-1(V670_D-1) adding edge: AGTCCACCAC...CAGACTCTCT:W5(V549_D-1) to A:W-1(V670_D-1) removing edge Edge(669->670,w:8.0)(T:W-1(V669_D-1)->A:W-1(V670_D-1)) removing edge Edge(549->669,w:8.0)(AGTCCACCAC...CAGACTCTCT:W5(V549_D-1)->T:W-1(V669_D-1)) Found potential edge: Edge(549->670,w:8.0) between AGTCCACCAC...CAGACTCTCT:W5(V549_D-1) and A:W-1(V670_D-1) removing vertex A:W-1(V670_D-1) was concatenated into AGTCCACCAC...AGACTCTCTA:W5(V549_D-1) Want to move edge Edge(670->671,w:8.0)(A:W-1(V670_D-1)->A:W-1(V671_D-1)) to (AGTCCACCAC...AGACTCTCTA:W5(V549_D-1)->A:W-1(V671_D-1) adding edge: AGTCCACCAC...AGACTCTCTA:W5(V549_D-1) to A:W-1(V671_D-1) removing edge Edge(670->671,w:8.0)(A:W-1(V670_D-1)->A:W-1(V671_D-1)) removing edge Edge(549->670,w:8.0)(AGTCCACCAC...AGACTCTCTA:W5(V549_D-1)->A:W-1(V670_D-1)) Found potential edge: Edge(549->671,w:8.0) between AGTCCACCAC...AGACTCTCTA:W5(V549_D-1) and A:W-1(V671_D-1) removing vertex A:W-1(V671_D-1) was concatenated into AGTCCACCAC...GACTCTCTAA:W5(V549_D-1) Want to move edge Edge(671->672,w:8.0)(A:W-1(V671_D-1)->G:W-1(V672_D-1)) to (AGTCCACCAC...GACTCTCTAA:W5(V549_D-1)->G:W-1(V672_D-1) adding edge: AGTCCACCAC...GACTCTCTAA:W5(V549_D-1) to G:W-1(V672_D-1) removing edge Edge(671->672,w:8.0)(A:W-1(V671_D-1)->G:W-1(V672_D-1)) removing edge Edge(549->671,w:8.0)(AGTCCACCAC...GACTCTCTAA:W5(V549_D-1)->A:W-1(V671_D-1)) Found potential edge: Edge(549->672,w:8.0) between AGTCCACCAC...GACTCTCTAA:W5(V549_D-1) and G:W-1(V672_D-1) removing vertex G:W-1(V672_D-1) was concatenated into AGTCCACCAC...ACTCTCTAAG:W5(V549_D-1) Want to move edge Edge(672->673,w:8.0)(G:W-1(V672_D-1)->G:W-1(V673_D-1)) to (AGTCCACCAC...ACTCTCTAAG:W5(V549_D-1)->G:W-1(V673_D-1) adding edge: AGTCCACCAC...ACTCTCTAAG:W5(V549_D-1) to G:W-1(V673_D-1) removing edge Edge(672->673,w:8.0)(G:W-1(V672_D-1)->G:W-1(V673_D-1)) removing edge Edge(549->672,w:8.0)(AGTCCACCAC...ACTCTCTAAG:W5(V549_D-1)->G:W-1(V672_D-1)) Found potential edge: Edge(549->673,w:8.0) between AGTCCACCAC...ACTCTCTAAG:W5(V549_D-1) and G:W-1(V673_D-1) removing vertex G:W-1(V673_D-1) was concatenated into AGTCCACCAC...CTCTCTAAGG:W5(V549_D-1) Want to move edge Edge(673->674,w:8.0)(G:W-1(V673_D-1)->G:W-1(V674_D-1)) to (AGTCCACCAC...CTCTCTAAGG:W5(V549_D-1)->G:W-1(V674_D-1) adding edge: AGTCCACCAC...CTCTCTAAGG:W5(V549_D-1) to G:W-1(V674_D-1) removing edge Edge(673->674,w:8.0)(G:W-1(V673_D-1)->G:W-1(V674_D-1)) removing edge Edge(549->673,w:8.0)(AGTCCACCAC...CTCTCTAAGG:W5(V549_D-1)->G:W-1(V673_D-1)) Found potential edge: Edge(549->674,w:8.0) between AGTCCACCAC...CTCTCTAAGG:W5(V549_D-1) and G:W-1(V674_D-1) removing vertex G:W-1(V674_D-1) was concatenated into AGTCCACCAC...TCTCTAAGGG:W5(V549_D-1) Want to move edge Edge(674->675,w:8.0)(G:W-1(V674_D-1)->A:W-1(V675_D-1)) to (AGTCCACCAC...TCTCTAAGGG:W5(V549_D-1)->A:W-1(V675_D-1) adding edge: AGTCCACCAC...TCTCTAAGGG:W5(V549_D-1) to A:W-1(V675_D-1) removing edge Edge(674->675,w:8.0)(G:W-1(V674_D-1)->A:W-1(V675_D-1)) removing edge Edge(549->674,w:8.0)(AGTCCACCAC...TCTCTAAGGG:W5(V549_D-1)->G:W-1(V674_D-1)) Found potential edge: Edge(549->675,w:8.0) between AGTCCACCAC...TCTCTAAGGG:W5(V549_D-1) and A:W-1(V675_D-1) removing vertex A:W-1(V675_D-1) was concatenated into AGTCCACCAC...CTCTAAGGGA:W5(V549_D-1) Want to move edge Edge(675->676,w:8.0)(A:W-1(V675_D-1)->C:W-1(V676_D-1)) to (AGTCCACCAC...CTCTAAGGGA:W5(V549_D-1)->C:W-1(V676_D-1) adding edge: AGTCCACCAC...CTCTAAGGGA:W5(V549_D-1) to C:W-1(V676_D-1) removing edge Edge(675->676,w:8.0)(A:W-1(V675_D-1)->C:W-1(V676_D-1)) removing edge Edge(549->675,w:8.0)(AGTCCACCAC...CTCTAAGGGA:W5(V549_D-1)->A:W-1(V675_D-1)) Found potential edge: Edge(549->676,w:8.0) between AGTCCACCAC...CTCTAAGGGA:W5(V549_D-1) and C:W-1(V676_D-1) removing vertex C:W-1(V676_D-1) was concatenated into AGTCCACCAC...TCTAAGGGAC:W5(V549_D-1) Want to move edge Edge(676->677,w:8.0)(C:W-1(V676_D-1)->A:W-1(V677_D-1)) to (AGTCCACCAC...TCTAAGGGAC:W5(V549_D-1)->A:W-1(V677_D-1) adding edge: AGTCCACCAC...TCTAAGGGAC:W5(V549_D-1) to A:W-1(V677_D-1) removing edge Edge(676->677,w:8.0)(C:W-1(V676_D-1)->A:W-1(V677_D-1)) removing edge Edge(549->676,w:8.0)(AGTCCACCAC...TCTAAGGGAC:W5(V549_D-1)->C:W-1(V676_D-1)) Found potential edge: Edge(549->677,w:8.0) between AGTCCACCAC...TCTAAGGGAC:W5(V549_D-1) and A:W-1(V677_D-1) removing vertex A:W-1(V677_D-1) was concatenated into AGTCCACCAC...CTAAGGGACA:W5(V549_D-1) Want to move edge Edge(677->678,w:8.0)(A:W-1(V677_D-1)->T:W-1(V678_D-1)) to (AGTCCACCAC...CTAAGGGACA:W5(V549_D-1)->T:W-1(V678_D-1) adding edge: AGTCCACCAC...CTAAGGGACA:W5(V549_D-1) to T:W-1(V678_D-1) removing edge Edge(677->678,w:8.0)(A:W-1(V677_D-1)->T:W-1(V678_D-1)) removing edge Edge(549->677,w:8.0)(AGTCCACCAC...CTAAGGGACA:W5(V549_D-1)->A:W-1(V677_D-1)) Found potential edge: Edge(549->678,w:8.0) between AGTCCACCAC...CTAAGGGACA:W5(V549_D-1) and T:W-1(V678_D-1) removing vertex T:W-1(V678_D-1) was concatenated into AGTCCACCAC...TAAGGGACAT:W5(V549_D-1) Want to move edge Edge(678->679,w:8.0)(T:W-1(V678_D-1)->A:W-1(V679_D-1)) to (AGTCCACCAC...TAAGGGACAT:W5(V549_D-1)->A:W-1(V679_D-1) adding edge: AGTCCACCAC...TAAGGGACAT:W5(V549_D-1) to A:W-1(V679_D-1) removing edge Edge(678->679,w:8.0)(T:W-1(V678_D-1)->A:W-1(V679_D-1)) removing edge Edge(549->678,w:8.0)(AGTCCACCAC...TAAGGGACAT:W5(V549_D-1)->T:W-1(V678_D-1)) Found potential edge: Edge(549->679,w:8.0) between AGTCCACCAC...TAAGGGACAT:W5(V549_D-1) and A:W-1(V679_D-1) removing vertex A:W-1(V679_D-1) was concatenated into AGTCCACCAC...AAGGGACATA:W5(V549_D-1) Want to move edge Edge(679->680,w:8.0)(A:W-1(V679_D-1)->T:W-1(V680_D-1)) to (AGTCCACCAC...AAGGGACATA:W5(V549_D-1)->T:W-1(V680_D-1) adding edge: AGTCCACCAC...AAGGGACATA:W5(V549_D-1) to T:W-1(V680_D-1) removing edge Edge(679->680,w:8.0)(A:W-1(V679_D-1)->T:W-1(V680_D-1)) removing edge Edge(549->679,w:8.0)(AGTCCACCAC...AAGGGACATA:W5(V549_D-1)->A:W-1(V679_D-1)) Found potential edge: Edge(549->680,w:8.0) between AGTCCACCAC...AAGGGACATA:W5(V549_D-1) and T:W-1(V680_D-1) removing vertex T:W-1(V680_D-1) was concatenated into AGTCCACCAC...AGGGACATAT:W5(V549_D-1) Want to move edge Edge(680->681,w:10.0)(T:W-1(V680_D-1)->G:W-1(V681_D-1)) to (AGTCCACCAC...AGGGACATAT:W5(V549_D-1)->G:W-1(V681_D-1) adding edge: AGTCCACCAC...AGGGACATAT:W5(V549_D-1) to G:W-1(V681_D-1) removing edge Edge(680->681,w:10.0)(T:W-1(V680_D-1)->G:W-1(V681_D-1)) removing edge Edge(549->680,w:8.0)(AGTCCACCAC...AGGGACATAT:W5(V549_D-1)->T:W-1(V680_D-1)) Found potential edge: Edge(549->681,w:10.0) between AGTCCACCAC...AGGGACATAT:W5(V549_D-1) and G:W-1(V681_D-1) removing vertex G:W-1(V681_D-1) was concatenated into AGTCCACCAC...GGGACATATG:W6(V549_D-1) Want to move edge Edge(681->682,w:10.0)(G:W-1(V681_D-1)->G:W-1(V682_D-1)) to (AGTCCACCAC...GGGACATATG:W6(V549_D-1)->G:W-1(V682_D-1) adding edge: AGTCCACCAC...GGGACATATG:W6(V549_D-1) to G:W-1(V682_D-1) removing edge Edge(681->682,w:10.0)(G:W-1(V681_D-1)->G:W-1(V682_D-1)) removing edge Edge(549->681,w:10.0)(AGTCCACCAC...GGGACATATG:W6(V549_D-1)->G:W-1(V681_D-1)) Found potential edge: Edge(549->682,w:10.0) between AGTCCACCAC...GGGACATATG:W6(V549_D-1) and G:W-1(V682_D-1) removing vertex G:W-1(V682_D-1) was concatenated into AGTCCACCAC...GGACATATGG:W6(V549_D-1) Want to move edge Edge(682->683,w:10.0)(G:W-1(V682_D-1)->G:W-1(V683_D-1)) to (AGTCCACCAC...GGACATATGG:W6(V549_D-1)->G:W-1(V683_D-1) adding edge: AGTCCACCAC...GGACATATGG:W6(V549_D-1) to G:W-1(V683_D-1) removing edge Edge(682->683,w:10.0)(G:W-1(V682_D-1)->G:W-1(V683_D-1)) removing edge Edge(549->682,w:10.0)(AGTCCACCAC...GGACATATGG:W6(V549_D-1)->G:W-1(V682_D-1)) Found potential edge: Edge(549->683,w:10.0) between AGTCCACCAC...GGACATATGG:W6(V549_D-1) and G:W-1(V683_D-1) removing vertex G:W-1(V683_D-1) was concatenated into AGTCCACCAC...GACATATGGG:W6(V549_D-1) Want to move edge Edge(683->684,w:8.0)(G:W-1(V683_D-1)->A:W-1(V684_D-1)) to (AGTCCACCAC...GACATATGGG:W6(V549_D-1)->A:W-1(V684_D-1) adding edge: AGTCCACCAC...GACATATGGG:W6(V549_D-1) to A:W-1(V684_D-1) removing edge Edge(683->684,w:8.0)(G:W-1(V683_D-1)->A:W-1(V684_D-1)) removing edge Edge(549->683,w:10.0)(AGTCCACCAC...GACATATGGG:W6(V549_D-1)->G:W-1(V683_D-1)) Found potential edge: Edge(549->684,w:8.0) between AGTCCACCAC...GACATATGGG:W6(V549_D-1) and A:W-1(V684_D-1) removing vertex A:W-1(V684_D-1) was concatenated into AGTCCACCAC...ACATATGGGA:W6(V549_D-1) Want to move edge Edge(684->685,w:8.0)(A:W-1(V684_D-1)->G:W-1(V685_D-1)) to (AGTCCACCAC...ACATATGGGA:W6(V549_D-1)->G:W-1(V685_D-1) adding edge: AGTCCACCAC...ACATATGGGA:W6(V549_D-1) to G:W-1(V685_D-1) removing edge Edge(684->685,w:8.0)(A:W-1(V684_D-1)->G:W-1(V685_D-1)) removing edge Edge(549->684,w:8.0)(AGTCCACCAC...ACATATGGGA:W6(V549_D-1)->A:W-1(V684_D-1)) Found potential edge: Edge(549->685,w:8.0) between AGTCCACCAC...ACATATGGGA:W6(V549_D-1) and G:W-1(V685_D-1) removing vertex G:W-1(V685_D-1) was concatenated into AGTCCACCAC...CATATGGGAG:W6(V549_D-1) Want to move edge Edge(685->686,w:8.0)(G:W-1(V685_D-1)->C:W-1(V686_D-1)) to (AGTCCACCAC...CATATGGGAG:W6(V549_D-1)->C:W-1(V686_D-1) adding edge: AGTCCACCAC...CATATGGGAG:W6(V549_D-1) to C:W-1(V686_D-1) removing edge Edge(685->686,w:8.0)(G:W-1(V685_D-1)->C:W-1(V686_D-1)) removing edge Edge(549->685,w:8.0)(AGTCCACCAC...CATATGGGAG:W6(V549_D-1)->G:W-1(V685_D-1)) Found potential edge: Edge(549->686,w:8.0) between AGTCCACCAC...CATATGGGAG:W6(V549_D-1) and C:W-1(V686_D-1) removing vertex C:W-1(V686_D-1) was concatenated into AGTCCACCAC...ATATGGGAGC:W6(V549_D-1) Want to move edge Edge(686->687,w:8.0)(C:W-1(V686_D-1)->T:W-1(V687_D-1)) to (AGTCCACCAC...ATATGGGAGC:W6(V549_D-1)->T:W-1(V687_D-1) adding edge: AGTCCACCAC...ATATGGGAGC:W6(V549_D-1) to T:W-1(V687_D-1) removing edge Edge(686->687,w:8.0)(C:W-1(V686_D-1)->T:W-1(V687_D-1)) removing edge Edge(549->686,w:8.0)(AGTCCACCAC...ATATGGGAGC:W6(V549_D-1)->C:W-1(V686_D-1)) Found potential edge: Edge(549->687,w:8.0) between AGTCCACCAC...ATATGGGAGC:W6(V549_D-1) and T:W-1(V687_D-1) removing vertex T:W-1(V687_D-1) was concatenated into AGTCCACCAC...TATGGGAGCT:W6(V549_D-1) Want to move edge Edge(687->688,w:8.0)(T:W-1(V687_D-1)->A:W-1(V688_D-1)) to (AGTCCACCAC...TATGGGAGCT:W6(V549_D-1)->A:W-1(V688_D-1) adding edge: AGTCCACCAC...TATGGGAGCT:W6(V549_D-1) to A:W-1(V688_D-1) removing edge Edge(687->688,w:8.0)(T:W-1(V687_D-1)->A:W-1(V688_D-1)) removing edge Edge(549->687,w:8.0)(AGTCCACCAC...TATGGGAGCT:W6(V549_D-1)->T:W-1(V687_D-1)) Found potential edge: Edge(549->688,w:8.0) between AGTCCACCAC...TATGGGAGCT:W6(V549_D-1) and A:W-1(V688_D-1) removing vertex A:W-1(V688_D-1) was concatenated into AGTCCACCAC...ATGGGAGCTA:W6(V549_D-1) Want to move edge Edge(688->689,w:6.0)(A:W-1(V688_D-1)->C:W-1(V689_D-1)) to (AGTCCACCAC...ATGGGAGCTA:W6(V549_D-1)->C:W-1(V689_D-1) adding edge: AGTCCACCAC...ATGGGAGCTA:W6(V549_D-1) to C:W-1(V689_D-1) removing edge Edge(688->689,w:6.0)(A:W-1(V688_D-1)->C:W-1(V689_D-1)) removing edge Edge(549->688,w:8.0)(AGTCCACCAC...ATGGGAGCTA:W6(V549_D-1)->A:W-1(V688_D-1)) Found potential edge: Edge(549->689,w:6.0) between AGTCCACCAC...ATGGGAGCTA:W6(V549_D-1) and C:W-1(V689_D-1) removing vertex C:W-1(V689_D-1) was concatenated into AGTCCACCAC...TGGGAGCTAC:W6(V549_D-1) Want to move edge Edge(689->690,w:6.0)(C:W-1(V689_D-1)->A:W-1(V690_D-1)) to (AGTCCACCAC...TGGGAGCTAC:W6(V549_D-1)->A:W-1(V690_D-1) adding edge: AGTCCACCAC...TGGGAGCTAC:W6(V549_D-1) to A:W-1(V690_D-1) removing edge Edge(689->690,w:6.0)(C:W-1(V689_D-1)->A:W-1(V690_D-1)) removing edge Edge(549->689,w:6.0)(AGTCCACCAC...TGGGAGCTAC:W6(V549_D-1)->C:W-1(V689_D-1)) Found potential edge: Edge(549->690,w:6.0) between AGTCCACCAC...TGGGAGCTAC:W6(V549_D-1) and A:W-1(V690_D-1) removing vertex A:W-1(V690_D-1) was concatenated into AGTCCACCAC...GGGAGCTACA:W6(V549_D-1) Want to move edge Edge(690->691,w:6.0)(A:W-1(V690_D-1)->T:W-1(V691_D-1)) to (AGTCCACCAC...GGGAGCTACA:W6(V549_D-1)->T:W-1(V691_D-1) adding edge: AGTCCACCAC...GGGAGCTACA:W6(V549_D-1) to T:W-1(V691_D-1) removing edge Edge(690->691,w:6.0)(A:W-1(V690_D-1)->T:W-1(V691_D-1)) removing edge Edge(549->690,w:6.0)(AGTCCACCAC...GGGAGCTACA:W6(V549_D-1)->A:W-1(V690_D-1)) Found potential edge: Edge(549->691,w:6.0) between AGTCCACCAC...GGGAGCTACA:W6(V549_D-1) and T:W-1(V691_D-1) removing vertex T:W-1(V691_D-1) was concatenated into AGTCCACCAC...GGAGCTACAT:W6(V549_D-1) Want to move edge Edge(691->692,w:4.0)(T:W-1(V691_D-1)->A:W-1(V692_D-1)) to (AGTCCACCAC...GGAGCTACAT:W6(V549_D-1)->A:W-1(V692_D-1) adding edge: AGTCCACCAC...GGAGCTACAT:W6(V549_D-1) to A:W-1(V692_D-1) removing edge Edge(691->692,w:4.0)(T:W-1(V691_D-1)->A:W-1(V692_D-1)) removing edge Edge(549->691,w:6.0)(AGTCCACCAC...GGAGCTACAT:W6(V549_D-1)->T:W-1(V691_D-1)) Found potential edge: Edge(549->692,w:4.0) between AGTCCACCAC...GGAGCTACAT:W6(V549_D-1) and A:W-1(V692_D-1) removing vertex A:W-1(V692_D-1) was concatenated into AGTCCACCAC...GAGCTACATA:W6(V549_D-1) Want to move edge Edge(692->693,w:4.0)(A:W-1(V692_D-1)->G:W-1(V693_D-1)) to (AGTCCACCAC...GAGCTACATA:W6(V549_D-1)->G:W-1(V693_D-1) adding edge: AGTCCACCAC...GAGCTACATA:W6(V549_D-1) to G:W-1(V693_D-1) removing edge Edge(692->693,w:4.0)(A:W-1(V692_D-1)->G:W-1(V693_D-1)) removing edge Edge(549->692,w:4.0)(AGTCCACCAC...GAGCTACATA:W6(V549_D-1)->A:W-1(V692_D-1)) Found potential edge: Edge(549->693,w:4.0) between AGTCCACCAC...GAGCTACATA:W6(V549_D-1) and G:W-1(V693_D-1) removing vertex G:W-1(V693_D-1) was concatenated into AGTCCACCAC...AGCTACATAG:W6(V549_D-1) Want to move edge Edge(693->694,w:4.0)(G:W-1(V693_D-1)->C:W-1(V694_D-1)) to (AGTCCACCAC...AGCTACATAG:W6(V549_D-1)->C:W-1(V694_D-1) adding edge: AGTCCACCAC...AGCTACATAG:W6(V549_D-1) to C:W-1(V694_D-1) removing edge Edge(693->694,w:4.0)(G:W-1(V693_D-1)->C:W-1(V694_D-1)) removing edge Edge(549->693,w:4.0)(AGTCCACCAC...AGCTACATAG:W6(V549_D-1)->G:W-1(V693_D-1)) Found potential edge: Edge(549->694,w:4.0) between AGTCCACCAC...AGCTACATAG:W6(V549_D-1) and C:W-1(V694_D-1) removing vertex C:W-1(V694_D-1) was concatenated into AGTCCACCAC...GCTACATAGC:W6(V549_D-1) Want to move edge Edge(694->695,w:4.0)(C:W-1(V694_D-1)->C:W-1(V695_D-1)) to (AGTCCACCAC...GCTACATAGC:W6(V549_D-1)->C:W-1(V695_D-1) adding edge: AGTCCACCAC...GCTACATAGC:W6(V549_D-1) to C:W-1(V695_D-1) removing edge Edge(694->695,w:4.0)(C:W-1(V694_D-1)->C:W-1(V695_D-1)) removing edge Edge(549->694,w:4.0)(AGTCCACCAC...GCTACATAGC:W6(V549_D-1)->C:W-1(V694_D-1)) Found potential edge: Edge(549->695,w:4.0) between AGTCCACCAC...GCTACATAGC:W6(V549_D-1) and C:W-1(V695_D-1) removing vertex C:W-1(V695_D-1) was concatenated into AGTCCACCAC...CTACATAGCC:W6(V549_D-1) Want to move edge Edge(695->696,w:4.0)(C:W-1(V695_D-1)->A:W-1(V696_D-1)) to (AGTCCACCAC...CTACATAGCC:W6(V549_D-1)->A:W-1(V696_D-1) adding edge: AGTCCACCAC...CTACATAGCC:W6(V549_D-1) to A:W-1(V696_D-1) removing edge Edge(695->696,w:4.0)(C:W-1(V695_D-1)->A:W-1(V696_D-1)) removing edge Edge(549->695,w:4.0)(AGTCCACCAC...CTACATAGCC:W6(V549_D-1)->C:W-1(V695_D-1)) Found potential edge: Edge(549->696,w:4.0) between AGTCCACCAC...CTACATAGCC:W6(V549_D-1) and A:W-1(V696_D-1) removing vertex A:W-1(V696_D-1) was concatenated into AGTCCACCAC...TACATAGCCA:W6(V549_D-1) Want to move edge Edge(696->697,w:6.0)(A:W-1(V696_D-1)->G:W-1(V697_D-1)) to (AGTCCACCAC...TACATAGCCA:W6(V549_D-1)->G:W-1(V697_D-1) adding edge: AGTCCACCAC...TACATAGCCA:W6(V549_D-1) to G:W-1(V697_D-1) removing edge Edge(696->697,w:6.0)(A:W-1(V696_D-1)->G:W-1(V697_D-1)) removing edge Edge(549->696,w:4.0)(AGTCCACCAC...TACATAGCCA:W6(V549_D-1)->A:W-1(V696_D-1)) Found potential edge: Edge(549->697,w:6.0) between AGTCCACCAC...TACATAGCCA:W6(V549_D-1) and G:W-1(V697_D-1) removing vertex G:W-1(V697_D-1) was concatenated into AGTCCACCAC...ACATAGCCAG:W6(V549_D-1) Want to move edge Edge(697->698,w:6.0)(G:W-1(V697_D-1)->C:W-1(V698_D-1)) to (AGTCCACCAC...ACATAGCCAG:W6(V549_D-1)->C:W-1(V698_D-1) adding edge: AGTCCACCAC...ACATAGCCAG:W6(V549_D-1) to C:W-1(V698_D-1) removing edge Edge(697->698,w:6.0)(G:W-1(V697_D-1)->C:W-1(V698_D-1)) removing edge Edge(549->697,w:6.0)(AGTCCACCAC...ACATAGCCAG:W6(V549_D-1)->G:W-1(V697_D-1)) Found potential edge: Edge(549->698,w:6.0) between AGTCCACCAC...ACATAGCCAG:W6(V549_D-1) and C:W-1(V698_D-1) removing vertex C:W-1(V698_D-1) was concatenated into AGTCCACCAC...CATAGCCAGC:W6(V549_D-1) Want to move edge Edge(698->699,w:6.0)(C:W-1(V698_D-1)->C:W-1(V699_D-1)) to (AGTCCACCAC...CATAGCCAGC:W6(V549_D-1)->C:W-1(V699_D-1) adding edge: AGTCCACCAC...CATAGCCAGC:W6(V549_D-1) to C:W-1(V699_D-1) removing edge Edge(698->699,w:6.0)(C:W-1(V698_D-1)->C:W-1(V699_D-1)) removing edge Edge(549->698,w:6.0)(AGTCCACCAC...CATAGCCAGC:W6(V549_D-1)->C:W-1(V698_D-1)) Found potential edge: Edge(549->699,w:6.0) between AGTCCACCAC...CATAGCCAGC:W6(V549_D-1) and C:W-1(V699_D-1) removing vertex C:W-1(V699_D-1) was concatenated into AGTCCACCAC...ATAGCCAGCC:W6(V549_D-1) Want to move edge Edge(699->700,w:6.0)(C:W-1(V699_D-1)->C:W-1(V700_D-1)) to (AGTCCACCAC...ATAGCCAGCC:W6(V549_D-1)->C:W-1(V700_D-1) adding edge: AGTCCACCAC...ATAGCCAGCC:W6(V549_D-1) to C:W-1(V700_D-1) removing edge Edge(699->700,w:6.0)(C:W-1(V699_D-1)->C:W-1(V700_D-1)) removing edge Edge(549->699,w:6.0)(AGTCCACCAC...ATAGCCAGCC:W6(V549_D-1)->C:W-1(V699_D-1)) Found potential edge: Edge(549->700,w:6.0) between AGTCCACCAC...ATAGCCAGCC:W6(V549_D-1) and C:W-1(V700_D-1) removing vertex C:W-1(V700_D-1) was concatenated into AGTCCACCAC...TAGCCAGCCC:W6(V549_D-1) Want to move edge Edge(700->701,w:6.0)(C:W-1(V700_D-1)->C:W-1(V701_D-1)) to (AGTCCACCAC...TAGCCAGCCC:W6(V549_D-1)->C:W-1(V701_D-1) adding edge: AGTCCACCAC...TAGCCAGCCC:W6(V549_D-1) to C:W-1(V701_D-1) removing edge Edge(700->701,w:6.0)(C:W-1(V700_D-1)->C:W-1(V701_D-1)) removing edge Edge(549->700,w:6.0)(AGTCCACCAC...TAGCCAGCCC:W6(V549_D-1)->C:W-1(V700_D-1)) Found potential edge: Edge(549->701,w:6.0) between AGTCCACCAC...TAGCCAGCCC:W6(V549_D-1) and C:W-1(V701_D-1) removing vertex C:W-1(V701_D-1) was concatenated into AGTCCACCAC...AGCCAGCCCC:W6(V549_D-1) Want to move edge Edge(701->702,w:6.0)(C:W-1(V701_D-1)->G:W-1(V702_D-1)) to (AGTCCACCAC...AGCCAGCCCC:W6(V549_D-1)->G:W-1(V702_D-1) adding edge: AGTCCACCAC...AGCCAGCCCC:W6(V549_D-1) to G:W-1(V702_D-1) removing edge Edge(701->702,w:6.0)(C:W-1(V701_D-1)->G:W-1(V702_D-1)) removing edge Edge(549->701,w:6.0)(AGTCCACCAC...AGCCAGCCCC:W6(V549_D-1)->C:W-1(V701_D-1)) Found potential edge: Edge(549->702,w:6.0) between AGTCCACCAC...AGCCAGCCCC:W6(V549_D-1) and G:W-1(V702_D-1) removing vertex G:W-1(V702_D-1) was concatenated into AGTCCACCAC...GCCAGCCCCG:W6(V549_D-1) Want to move edge Edge(702->703,w:6.0)(G:W-1(V702_D-1)->T:W-1(V703_D-1)) to (AGTCCACCAC...GCCAGCCCCG:W6(V549_D-1)->T:W-1(V703_D-1) adding edge: AGTCCACCAC...GCCAGCCCCG:W6(V549_D-1) to T:W-1(V703_D-1) removing edge Edge(702->703,w:6.0)(G:W-1(V702_D-1)->T:W-1(V703_D-1)) removing edge Edge(549->702,w:6.0)(AGTCCACCAC...GCCAGCCCCG:W6(V549_D-1)->G:W-1(V702_D-1)) Found potential edge: Edge(549->703,w:6.0) between AGTCCACCAC...GCCAGCCCCG:W6(V549_D-1) and T:W-1(V703_D-1) removing vertex T:W-1(V703_D-1) was concatenated into AGTCCACCAC...CCAGCCCCGT:W6(V549_D-1) Want to move edge Edge(703->704,w:6.0)(T:W-1(V703_D-1)->G:W-1(V704_D-1)) to (AGTCCACCAC...CCAGCCCCGT:W6(V549_D-1)->G:W-1(V704_D-1) adding edge: AGTCCACCAC...CCAGCCCCGT:W6(V549_D-1) to G:W-1(V704_D-1) removing edge Edge(703->704,w:6.0)(T:W-1(V703_D-1)->G:W-1(V704_D-1)) removing edge Edge(549->703,w:6.0)(AGTCCACCAC...CCAGCCCCGT:W6(V549_D-1)->T:W-1(V703_D-1)) Found potential edge: Edge(549->704,w:6.0) between AGTCCACCAC...CCAGCCCCGT:W6(V549_D-1) and G:W-1(V704_D-1) removing vertex G:W-1(V704_D-1) was concatenated into AGTCCACCAC...CAGCCCCGTG:W6(V549_D-1) Want to move edge Edge(704->705,w:6.0)(G:W-1(V704_D-1)->G:W-1(V705_D-1)) to (AGTCCACCAC...CAGCCCCGTG:W6(V549_D-1)->G:W-1(V705_D-1) adding edge: AGTCCACCAC...CAGCCCCGTG:W6(V549_D-1) to G:W-1(V705_D-1) removing edge Edge(704->705,w:6.0)(G:W-1(V704_D-1)->G:W-1(V705_D-1)) removing edge Edge(549->704,w:6.0)(AGTCCACCAC...CAGCCCCGTG:W6(V549_D-1)->G:W-1(V704_D-1)) Found potential edge: Edge(549->705,w:6.0) between AGTCCACCAC...CAGCCCCGTG:W6(V549_D-1) and G:W-1(V705_D-1) removing vertex G:W-1(V705_D-1) was concatenated into AGTCCACCAC...AGCCCCGTGG:W6(V549_D-1) Want to move edge Edge(705->706,w:6.0)(G:W-1(V705_D-1)->A:W-1(V706_D-1)) to (AGTCCACCAC...AGCCCCGTGG:W6(V549_D-1)->A:W-1(V706_D-1) adding edge: AGTCCACCAC...AGCCCCGTGG:W6(V549_D-1) to A:W-1(V706_D-1) removing edge Edge(705->706,w:6.0)(G:W-1(V705_D-1)->A:W-1(V706_D-1)) removing edge Edge(549->705,w:6.0)(AGTCCACCAC...AGCCCCGTGG:W6(V549_D-1)->G:W-1(V705_D-1)) Found potential edge: Edge(549->706,w:6.0) between AGTCCACCAC...AGCCCCGTGG:W6(V549_D-1) and A:W-1(V706_D-1) removing vertex A:W-1(V706_D-1) was concatenated into AGTCCACCAC...GCCCCGTGGA:W6(V549_D-1) Want to move edge Edge(706->707,w:6.0)(A:W-1(V706_D-1)->G:W-1(V707_D-1)) to (AGTCCACCAC...GCCCCGTGGA:W6(V549_D-1)->G:W-1(V707_D-1) adding edge: AGTCCACCAC...GCCCCGTGGA:W6(V549_D-1) to G:W-1(V707_D-1) removing edge Edge(706->707,w:6.0)(A:W-1(V706_D-1)->G:W-1(V707_D-1)) removing edge Edge(549->706,w:6.0)(AGTCCACCAC...GCCCCGTGGA:W6(V549_D-1)->A:W-1(V706_D-1)) Found potential edge: Edge(549->707,w:6.0) between AGTCCACCAC...GCCCCGTGGA:W6(V549_D-1) and G:W-1(V707_D-1) removing vertex G:W-1(V707_D-1) was concatenated into AGTCCACCAC...CCCCGTGGAG:W6(V549_D-1) Want to move edge Edge(707->708,w:6.0)(G:W-1(V707_D-1)->G:W-1(V708_D-1)) to (AGTCCACCAC...CCCCGTGGAG:W6(V549_D-1)->G:W-1(V708_D-1) adding edge: AGTCCACCAC...CCCCGTGGAG:W6(V549_D-1) to G:W-1(V708_D-1) removing edge Edge(707->708,w:6.0)(G:W-1(V707_D-1)->G:W-1(V708_D-1)) removing edge Edge(549->707,w:6.0)(AGTCCACCAC...CCCCGTGGAG:W6(V549_D-1)->G:W-1(V707_D-1)) Found potential edge: Edge(549->708,w:6.0) between AGTCCACCAC...CCCCGTGGAG:W6(V549_D-1) and G:W-1(V708_D-1) removing vertex G:W-1(V708_D-1) was concatenated into AGTCCACCAC...CCCGTGGAGG:W6(V549_D-1) Want to move edge Edge(708->709,w:6.0)(G:W-1(V708_D-1)->G:W-1(V709_D-1)) to (AGTCCACCAC...CCCGTGGAGG:W6(V549_D-1)->G:W-1(V709_D-1) adding edge: AGTCCACCAC...CCCGTGGAGG:W6(V549_D-1) to G:W-1(V709_D-1) removing edge Edge(708->709,w:6.0)(G:W-1(V708_D-1)->G:W-1(V709_D-1)) removing edge Edge(549->708,w:6.0)(AGTCCACCAC...CCCGTGGAGG:W6(V549_D-1)->G:W-1(V708_D-1)) Found potential edge: Edge(549->709,w:6.0) between AGTCCACCAC...CCCGTGGAGG:W6(V549_D-1) and G:W-1(V709_D-1) removing vertex G:W-1(V709_D-1) was concatenated into AGTCCACCAC...CCGTGGAGGG:W6(V549_D-1) Want to move edge Edge(709->710,w:4.0)(G:W-1(V709_D-1)->A:W-1(V710_D-1)) to (AGTCCACCAC...CCGTGGAGGG:W6(V549_D-1)->A:W-1(V710_D-1) adding edge: AGTCCACCAC...CCGTGGAGGG:W6(V549_D-1) to A:W-1(V710_D-1) removing edge Edge(709->710,w:4.0)(G:W-1(V709_D-1)->A:W-1(V710_D-1)) removing edge Edge(549->709,w:6.0)(AGTCCACCAC...CCGTGGAGGG:W6(V549_D-1)->G:W-1(V709_D-1)) Found potential edge: Edge(549->710,w:4.0) between AGTCCACCAC...CCGTGGAGGG:W6(V549_D-1) and A:W-1(V710_D-1) removing vertex A:W-1(V710_D-1) was concatenated into AGTCCACCAC...CGTGGAGGGA:W6(V549_D-1) Want to move edge Edge(710->711,w:4.0)(A:W-1(V710_D-1)->G:W-1(V711_D-1)) to (AGTCCACCAC...CGTGGAGGGA:W6(V549_D-1)->G:W-1(V711_D-1) adding edge: AGTCCACCAC...CGTGGAGGGA:W6(V549_D-1) to G:W-1(V711_D-1) removing edge Edge(710->711,w:4.0)(A:W-1(V710_D-1)->G:W-1(V711_D-1)) removing edge Edge(549->710,w:4.0)(AGTCCACCAC...CGTGGAGGGA:W6(V549_D-1)->A:W-1(V710_D-1)) Found potential edge: Edge(549->711,w:4.0) between AGTCCACCAC...CGTGGAGGGA:W6(V549_D-1) and G:W-1(V711_D-1) removing vertex G:W-1(V711_D-1) was concatenated into AGTCCACCAC...GTGGAGGGAG:W6(V549_D-1) Want to move edge Edge(711->712,w:4.0)(G:W-1(V711_D-1)->C:W-1(V712_D-1)) to (AGTCCACCAC...GTGGAGGGAG:W6(V549_D-1)->C:W-1(V712_D-1) adding edge: AGTCCACCAC...GTGGAGGGAG:W6(V549_D-1) to C:W-1(V712_D-1) removing edge Edge(711->712,w:4.0)(G:W-1(V711_D-1)->C:W-1(V712_D-1)) removing edge Edge(549->711,w:4.0)(AGTCCACCAC...GTGGAGGGAG:W6(V549_D-1)->G:W-1(V711_D-1)) Found potential edge: Edge(549->712,w:4.0) between AGTCCACCAC...GTGGAGGGAG:W6(V549_D-1) and C:W-1(V712_D-1) removing vertex C:W-1(V712_D-1) was concatenated into AGTCCACCAC...TGGAGGGAGC:W6(V549_D-1) Want to move edge Edge(712->713,w:4.0)(C:W-1(V712_D-1)->C:W-1(V713_D-1)) to (AGTCCACCAC...TGGAGGGAGC:W6(V549_D-1)->C:W-1(V713_D-1) adding edge: AGTCCACCAC...TGGAGGGAGC:W6(V549_D-1) to C:W-1(V713_D-1) removing edge Edge(712->713,w:4.0)(C:W-1(V712_D-1)->C:W-1(V713_D-1)) removing edge Edge(549->712,w:4.0)(AGTCCACCAC...TGGAGGGAGC:W6(V549_D-1)->C:W-1(V712_D-1)) Found potential edge: Edge(549->713,w:4.0) between AGTCCACCAC...TGGAGGGAGC:W6(V549_D-1) and C:W-1(V713_D-1) removing vertex C:W-1(V713_D-1) was concatenated into AGTCCACCAC...GGAGGGAGCC:W6(V549_D-1) Want to move edge Edge(713->714,w:4.0)(C:W-1(V713_D-1)->A:W-1(V714_D-1)) to (AGTCCACCAC...GGAGGGAGCC:W6(V549_D-1)->A:W-1(V714_D-1) adding edge: AGTCCACCAC...GGAGGGAGCC:W6(V549_D-1) to A:W-1(V714_D-1) removing edge Edge(713->714,w:4.0)(C:W-1(V713_D-1)->A:W-1(V714_D-1)) removing edge Edge(549->713,w:4.0)(AGTCCACCAC...GGAGGGAGCC:W6(V549_D-1)->C:W-1(V713_D-1)) Found potential edge: Edge(549->714,w:4.0) between AGTCCACCAC...GGAGGGAGCC:W6(V549_D-1) and A:W-1(V714_D-1) removing vertex A:W-1(V714_D-1) was concatenated into AGTCCACCAC...GAGGGAGCCA:W6(V549_D-1) Want to move edge Edge(714->715,w:4.0)(A:W-1(V714_D-1)->C:W-1(V715_D-1)) to (AGTCCACCAC...GAGGGAGCCA:W6(V549_D-1)->C:W-1(V715_D-1) adding edge: AGTCCACCAC...GAGGGAGCCA:W6(V549_D-1) to C:W-1(V715_D-1) removing edge Edge(714->715,w:4.0)(A:W-1(V714_D-1)->C:W-1(V715_D-1)) removing edge Edge(549->714,w:4.0)(AGTCCACCAC...GAGGGAGCCA:W6(V549_D-1)->A:W-1(V714_D-1)) Found potential edge: Edge(549->715,w:4.0) between AGTCCACCAC...GAGGGAGCCA:W6(V549_D-1) and C:W-1(V715_D-1) removing vertex C:W-1(V715_D-1) was concatenated into AGTCCACCAC...AGGGAGCCAC:W6(V549_D-1) Want to move edge Edge(715->716,w:4.0)(C:W-1(V715_D-1)->C:W-1(V716_D-1)) to (AGTCCACCAC...AGGGAGCCAC:W6(V549_D-1)->C:W-1(V716_D-1) adding edge: AGTCCACCAC...AGGGAGCCAC:W6(V549_D-1) to C:W-1(V716_D-1) removing edge Edge(715->716,w:4.0)(C:W-1(V715_D-1)->C:W-1(V716_D-1)) removing edge Edge(549->715,w:4.0)(AGTCCACCAC...AGGGAGCCAC:W6(V549_D-1)->C:W-1(V715_D-1)) Found potential edge: Edge(549->716,w:4.0) between AGTCCACCAC...AGGGAGCCAC:W6(V549_D-1) and C:W-1(V716_D-1) removing vertex C:W-1(V716_D-1) was concatenated into AGTCCACCAC...GGGAGCCACC:W6(V549_D-1) Want to move edge Edge(716->717,w:4.0)(C:W-1(V716_D-1)->A:W-1(V717_D-1)) to (AGTCCACCAC...GGGAGCCACC:W6(V549_D-1)->A:W-1(V717_D-1) adding edge: AGTCCACCAC...GGGAGCCACC:W6(V549_D-1) to A:W-1(V717_D-1) removing edge Edge(716->717,w:4.0)(C:W-1(V716_D-1)->A:W-1(V717_D-1)) removing edge Edge(549->716,w:4.0)(AGTCCACCAC...GGGAGCCACC:W6(V549_D-1)->C:W-1(V716_D-1)) Found potential edge: Edge(717->718,w:6.0) between A:W-1(V717_D-1) and G:W-1(V718_D-1) removing vertex G:W-1(V718_D-1) was concatenated into AG:W6(V717_D-1) Want to move edge Edge(718->719,w:6.0)(G:W-1(V718_D-1)->C:W-1(V719_D-1)) to (AG:W6(V717_D-1)->C:W-1(V719_D-1) adding edge: AG:W6(V717_D-1) to C:W-1(V719_D-1) removing edge Edge(718->719,w:6.0)(G:W-1(V718_D-1)->C:W-1(V719_D-1)) removing edge Edge(717->718,w:6.0)(AG:W6(V717_D-1)->G:W-1(V718_D-1)) Found potential edge: Edge(717->719,w:6.0) between AG:W6(V717_D-1) and C:W-1(V719_D-1) removing vertex C:W-1(V719_D-1) was concatenated into AGC:W6(V717_D-1) Want to move edge Edge(719->720,w:6.0)(C:W-1(V719_D-1)->C:W-1(V720_D-1)) to (AGC:W6(V717_D-1)->C:W-1(V720_D-1) adding edge: AGC:W6(V717_D-1) to C:W-1(V720_D-1) removing edge Edge(719->720,w:6.0)(C:W-1(V719_D-1)->C:W-1(V720_D-1)) removing edge Edge(717->719,w:6.0)(AGC:W6(V717_D-1)->C:W-1(V719_D-1)) Found potential edge: Edge(717->720,w:6.0) between AGC:W6(V717_D-1) and C:W-1(V720_D-1) removing vertex C:W-1(V720_D-1) was concatenated into AGCC:W6(V717_D-1) Want to move edge Edge(720->721,w:6.0)(C:W-1(V720_D-1)->A:W-1(V721_D-1)) to (AGCC:W6(V717_D-1)->A:W-1(V721_D-1) adding edge: AGCC:W6(V717_D-1) to A:W-1(V721_D-1) removing edge Edge(720->721,w:6.0)(C:W-1(V720_D-1)->A:W-1(V721_D-1)) removing edge Edge(717->720,w:6.0)(AGCC:W6(V717_D-1)->C:W-1(V720_D-1)) Found potential edge: Edge(717->721,w:6.0) between AGCC:W6(V717_D-1) and A:W-1(V721_D-1) removing vertex A:W-1(V721_D-1) was concatenated into AGCCA:W6(V717_D-1) Want to move edge Edge(721->722,w:6.0)(A:W-1(V721_D-1)->C:W-1(V722_D-1)) to (AGCCA:W6(V717_D-1)->C:W-1(V722_D-1) adding edge: AGCCA:W6(V717_D-1) to C:W-1(V722_D-1) removing edge Edge(721->722,w:6.0)(A:W-1(V721_D-1)->C:W-1(V722_D-1)) removing edge Edge(717->721,w:6.0)(AGCCA:W6(V717_D-1)->A:W-1(V721_D-1)) Found potential edge: Edge(717->722,w:6.0) between AGCCA:W6(V717_D-1) and C:W-1(V722_D-1) removing vertex C:W-1(V722_D-1) was concatenated into AGCCAC:W6(V717_D-1) Want to move edge Edge(722->723,w:6.0)(C:W-1(V722_D-1)->A:W-1(V723_D-1)) to (AGCCAC:W6(V717_D-1)->A:W-1(V723_D-1) adding edge: AGCCAC:W6(V717_D-1) to A:W-1(V723_D-1) removing edge Edge(722->723,w:6.0)(C:W-1(V722_D-1)->A:W-1(V723_D-1)) removing edge Edge(717->722,w:6.0)(AGCCAC:W6(V717_D-1)->C:W-1(V722_D-1)) Found potential edge: Edge(717->723,w:6.0) between AGCCAC:W6(V717_D-1) and A:W-1(V723_D-1) removing vertex A:W-1(V723_D-1) was concatenated into AGCCACA:W6(V717_D-1) Want to move edge Edge(723->724,w:6.0)(A:W-1(V723_D-1)->G:W-1(V724_D-1)) to (AGCCACA:W6(V717_D-1)->G:W-1(V724_D-1) adding edge: AGCCACA:W6(V717_D-1) to G:W-1(V724_D-1) removing edge Edge(723->724,w:6.0)(A:W-1(V723_D-1)->G:W-1(V724_D-1)) removing edge Edge(717->723,w:6.0)(AGCCACA:W6(V717_D-1)->A:W-1(V723_D-1)) Found potential edge: Edge(717->724,w:6.0) between AGCCACA:W6(V717_D-1) and G:W-1(V724_D-1) removing vertex G:W-1(V724_D-1) was concatenated into AGCCACAG:W6(V717_D-1) Want to move edge Edge(724->725,w:6.0)(G:W-1(V724_D-1)->G:W-1(V725_D-1)) to (AGCCACAG:W6(V717_D-1)->G:W-1(V725_D-1) adding edge: AGCCACAG:W6(V717_D-1) to G:W-1(V725_D-1) removing edge Edge(724->725,w:6.0)(G:W-1(V724_D-1)->G:W-1(V725_D-1)) removing edge Edge(717->724,w:6.0)(AGCCACAG:W6(V717_D-1)->G:W-1(V724_D-1)) Found potential edge: Edge(717->725,w:6.0) between AGCCACAG:W6(V717_D-1) and G:W-1(V725_D-1) removing vertex G:W-1(V725_D-1) was concatenated into AGCCACAGG:W6(V717_D-1) Want to move edge Edge(725->726,w:6.0)(G:W-1(V725_D-1)->T:W-1(V726_D-1)) to (AGCCACAGG:W6(V717_D-1)->T:W-1(V726_D-1) adding edge: AGCCACAGG:W6(V717_D-1) to T:W-1(V726_D-1) removing edge Edge(725->726,w:6.0)(G:W-1(V725_D-1)->T:W-1(V726_D-1)) removing edge Edge(717->725,w:6.0)(AGCCACAGG:W6(V717_D-1)->G:W-1(V725_D-1)) Found potential edge: Edge(717->726,w:6.0) between AGCCACAGG:W6(V717_D-1) and T:W-1(V726_D-1) removing vertex T:W-1(V726_D-1) was concatenated into AGCCACAGGT:W6(V717_D-1) Want to move edge Edge(726->727,w:6.0)(T:W-1(V726_D-1)->A:W-1(V727_D-1)) to (AGCCACAGGT:W6(V717_D-1)->A:W-1(V727_D-1) adding edge: AGCCACAGGT:W6(V717_D-1) to A:W-1(V727_D-1) removing edge Edge(726->727,w:6.0)(T:W-1(V726_D-1)->A:W-1(V727_D-1)) removing edge Edge(717->726,w:6.0)(AGCCACAGGT:W6(V717_D-1)->T:W-1(V726_D-1)) Found potential edge: Edge(717->727,w:6.0) between AGCCACAGGT:W6(V717_D-1) and A:W-1(V727_D-1) removing vertex A:W-1(V727_D-1) was concatenated into AGCCACAGGTA:W6(V717_D-1) Want to move edge Edge(727->728,w:6.0)(A:W-1(V727_D-1)->C:W-1(V728_D-1)) to (AGCCACAGGTA:W6(V717_D-1)->C:W-1(V728_D-1) adding edge: AGCCACAGGTA:W6(V717_D-1) to C:W-1(V728_D-1) removing edge Edge(727->728,w:6.0)(A:W-1(V727_D-1)->C:W-1(V728_D-1)) removing edge Edge(717->727,w:6.0)(AGCCACAGGTA:W6(V717_D-1)->A:W-1(V727_D-1)) Found potential edge: Edge(717->728,w:6.0) between AGCCACAGGTA:W6(V717_D-1) and C:W-1(V728_D-1) removing vertex C:W-1(V728_D-1) was concatenated into AGCCACAGGTAC:W6(V717_D-1) Want to move edge Edge(728->729,w:6.0)(C:W-1(V728_D-1)->C:W-1(V729_D-1)) to (AGCCACAGGTAC:W6(V717_D-1)->C:W-1(V729_D-1) adding edge: AGCCACAGGTAC:W6(V717_D-1) to C:W-1(V729_D-1) removing edge Edge(728->729,w:6.0)(C:W-1(V728_D-1)->C:W-1(V729_D-1)) removing edge Edge(717->728,w:6.0)(AGCCACAGGTAC:W6(V717_D-1)->C:W-1(V728_D-1)) Found potential edge: Edge(717->729,w:6.0) between AGCCACAGGTAC:W6(V717_D-1) and C:W-1(V729_D-1) removing vertex C:W-1(V729_D-1) was concatenated into AGCCACAGGTACC:W6(V717_D-1) Want to move edge Edge(729->730,w:6.0)(C:W-1(V729_D-1)->T:W-1(V730_D-1)) to (AGCCACAGGTACC:W6(V717_D-1)->T:W-1(V730_D-1) adding edge: AGCCACAGGTACC:W6(V717_D-1) to T:W-1(V730_D-1) removing edge Edge(729->730,w:6.0)(C:W-1(V729_D-1)->T:W-1(V730_D-1)) removing edge Edge(717->729,w:6.0)(AGCCACAGGTACC:W6(V717_D-1)->C:W-1(V729_D-1)) Found potential edge: Edge(717->730,w:6.0) between AGCCACAGGTACC:W6(V717_D-1) and T:W-1(V730_D-1) removing vertex T:W-1(V730_D-1) was concatenated into AGCCACAGGTACCT:W6(V717_D-1) Want to move edge Edge(730->731,w:6.0)(T:W-1(V730_D-1)->G:W-1(V731_D-1)) to (AGCCACAGGTACCT:W6(V717_D-1)->G:W-1(V731_D-1) adding edge: AGCCACAGGTACCT:W6(V717_D-1) to G:W-1(V731_D-1) removing edge Edge(730->731,w:6.0)(T:W-1(V730_D-1)->G:W-1(V731_D-1)) removing edge Edge(717->730,w:6.0)(AGCCACAGGTACCT:W6(V717_D-1)->T:W-1(V730_D-1)) Found potential edge: Edge(717->731,w:6.0) between AGCCACAGGTACCT:W6(V717_D-1) and G:W-1(V731_D-1) removing vertex G:W-1(V731_D-1) was concatenated into AGCCACAGGTACCTG:W6(V717_D-1) Want to move edge Edge(731->732,w:6.0)(G:W-1(V731_D-1)->A:W-1(V732_D-1)) to (AGCCACAGGTACCTG:W6(V717_D-1)->A:W-1(V732_D-1) adding edge: AGCCACAGGTACCTG:W6(V717_D-1) to A:W-1(V732_D-1) removing edge Edge(731->732,w:6.0)(G:W-1(V731_D-1)->A:W-1(V732_D-1)) removing edge Edge(717->731,w:6.0)(AGCCACAGGTACCTG:W6(V717_D-1)->G:W-1(V731_D-1)) Found potential edge: Edge(717->732,w:6.0) between AGCCACAGGTACCTG:W6(V717_D-1) and A:W-1(V732_D-1) removing vertex A:W-1(V732_D-1) was concatenated into AGCCACAGGTACCTGA:W6(V717_D-1) Want to move edge Edge(732->733,w:6.0)(A:W-1(V732_D-1)->T:W-1(V733_D-1)) to (AGCCACAGGTACCTGA:W6(V717_D-1)->T:W-1(V733_D-1) adding edge: AGCCACAGGTACCTGA:W6(V717_D-1) to T:W-1(V733_D-1) removing edge Edge(732->733,w:6.0)(A:W-1(V732_D-1)->T:W-1(V733_D-1)) removing edge Edge(717->732,w:6.0)(AGCCACAGGTACCTGA:W6(V717_D-1)->A:W-1(V732_D-1)) Found potential edge: Edge(717->733,w:6.0) between AGCCACAGGTACCTGA:W6(V717_D-1) and T:W-1(V733_D-1) removing vertex T:W-1(V733_D-1) was concatenated into AGCCACAGGTACCTGAT:W6(V717_D-1) Want to move edge Edge(733->734,w:6.0)(T:W-1(V733_D-1)->G:W-1(V734_D-1)) to (AGCCACAGGTACCTGAT:W6(V717_D-1)->G:W-1(V734_D-1) adding edge: AGCCACAGGTACCTGAT:W6(V717_D-1) to G:W-1(V734_D-1) removing edge Edge(733->734,w:6.0)(T:W-1(V733_D-1)->G:W-1(V734_D-1)) removing edge Edge(717->733,w:6.0)(AGCCACAGGTACCTGAT:W6(V717_D-1)->T:W-1(V733_D-1)) Found potential edge: Edge(717->734,w:6.0) between AGCCACAGGTACCTGAT:W6(V717_D-1) and G:W-1(V734_D-1) removing vertex G:W-1(V734_D-1) was concatenated into AGCCACAGGTACCTGATG:W6(V717_D-1) Want to move edge Edge(734->735,w:6.0)(G:W-1(V734_D-1)->G:W-1(V735_D-1)) to (AGCCACAGGTACCTGATG:W6(V717_D-1)->G:W-1(V735_D-1) adding edge: AGCCACAGGTACCTGATG:W6(V717_D-1) to G:W-1(V735_D-1) removing edge Edge(734->735,w:6.0)(G:W-1(V734_D-1)->G:W-1(V735_D-1)) removing edge Edge(717->734,w:6.0)(AGCCACAGGTACCTGATG:W6(V717_D-1)->G:W-1(V734_D-1)) Found potential edge: Edge(717->735,w:6.0) between AGCCACAGGTACCTGATG:W6(V717_D-1) and G:W-1(V735_D-1) removing vertex G:W-1(V735_D-1) was concatenated into AGCCACAGGTACCTGATGG:W6(V717_D-1) Want to move edge Edge(735->736,w:6.0)(G:W-1(V735_D-1)->A:W-1(V736_D-1)) to (AGCCACAGGTACCTGATGG:W6(V717_D-1)->A:W-1(V736_D-1) adding edge: AGCCACAGGTACCTGATGG:W6(V717_D-1) to A:W-1(V736_D-1) removing edge Edge(735->736,w:6.0)(G:W-1(V735_D-1)->A:W-1(V736_D-1)) removing edge Edge(717->735,w:6.0)(AGCCACAGGTACCTGATGG:W6(V717_D-1)->G:W-1(V735_D-1)) Found potential edge: Edge(717->736,w:6.0) between AGCCACAGGTACCTGATGG:W6(V717_D-1) and A:W-1(V736_D-1) removing vertex A:W-1(V736_D-1) was concatenated into AGCCACAGGTACCTGATGGA:W6(V717_D-1) Want to move edge Edge(736->737,w:6.0)(A:W-1(V736_D-1)->A:W-1(V737_D-1)) to (AGCCACAGGTACCTGATGGA:W6(V717_D-1)->A:W-1(V737_D-1) adding edge: AGCCACAGGTACCTGATGGA:W6(V717_D-1) to A:W-1(V737_D-1) removing edge Edge(736->737,w:6.0)(A:W-1(V736_D-1)->A:W-1(V737_D-1)) removing edge Edge(717->736,w:6.0)(AGCCACAGGTACCTGATGGA:W6(V717_D-1)->A:W-1(V736_D-1)) Found potential edge: Edge(717->737,w:6.0) between AGCCACAGGTACCTGATGGA:W6(V717_D-1) and A:W-1(V737_D-1) removing vertex A:W-1(V737_D-1) was concatenated into AGCCACAGGTACCTGATGGAA:W6(V717_D-1) Want to move edge Edge(737->738,w:6.0)(A:W-1(V737_D-1)->A:W-1(V738_D-1)) to (AGCCACAGGTACCTGATGGAA:W6(V717_D-1)->A:W-1(V738_D-1) adding edge: AGCCACAGGTACCTGATGGAA:W6(V717_D-1) to A:W-1(V738_D-1) removing edge Edge(737->738,w:6.0)(A:W-1(V737_D-1)->A:W-1(V738_D-1)) removing edge Edge(717->737,w:6.0)(AGCCACAGGTACCTGATGGAA:W6(V717_D-1)->A:W-1(V737_D-1)) Found potential edge: Edge(717->738,w:6.0) between AGCCACAGGTACCTGATGGAA:W6(V717_D-1) and A:W-1(V738_D-1) removing vertex A:W-1(V738_D-1) was concatenated into AGCCACAGGTACCTGATGGAAA:W6(V717_D-1) Want to move edge Edge(738->739,w:6.0)(A:W-1(V738_D-1)->T:W-1(V739_D-1)) to (AGCCACAGGTACCTGATGGAAA:W6(V717_D-1)->T:W-1(V739_D-1) adding edge: AGCCACAGGTACCTGATGGAAA:W6(V717_D-1) to T:W-1(V739_D-1) removing edge Edge(738->739,w:6.0)(A:W-1(V738_D-1)->T:W-1(V739_D-1)) removing edge Edge(717->738,w:6.0)(AGCCACAGGTACCTGATGGAAA:W6(V717_D-1)->A:W-1(V738_D-1)) Found potential edge: Edge(717->739,w:6.0) between AGCCACAGGTACCTGATGGAAA:W6(V717_D-1) and T:W-1(V739_D-1) removing vertex T:W-1(V739_D-1) was concatenated into AGCCACAGGTACCTGATGGAAAT:W6(V717_D-1) Want to move edge Edge(739->740,w:6.0)(T:W-1(V739_D-1)->G:W-1(V740_D-1)) to (AGCCACAGGTACCTGATGGAAAT:W6(V717_D-1)->G:W-1(V740_D-1) adding edge: AGCCACAGGTACCTGATGGAAAT:W6(V717_D-1) to G:W-1(V740_D-1) removing edge Edge(739->740,w:6.0)(T:W-1(V739_D-1)->G:W-1(V740_D-1)) removing edge Edge(717->739,w:6.0)(AGCCACAGGTACCTGATGGAAAT:W6(V717_D-1)->T:W-1(V739_D-1)) Found potential edge: Edge(717->740,w:6.0) between AGCCACAGGTACCTGATGGAAAT:W6(V717_D-1) and G:W-1(V740_D-1) removing vertex G:W-1(V740_D-1) was concatenated into AGCCACAGGTACCTGATGGAAATG:W6(V717_D-1) Want to move edge Edge(740->741,w:6.0)(G:W-1(V740_D-1)->C:W-1(V741_D-1)) to (AGCCACAGGTACCTGATGGAAATG:W6(V717_D-1)->C:W-1(V741_D-1) adding edge: AGCCACAGGTACCTGATGGAAATG:W6(V717_D-1) to C:W-1(V741_D-1) removing edge Edge(740->741,w:6.0)(G:W-1(V740_D-1)->C:W-1(V741_D-1)) removing edge Edge(717->740,w:6.0)(AGCCACAGGTACCTGATGGAAATG:W6(V717_D-1)->G:W-1(V740_D-1)) Found potential edge: Edge(717->741,w:6.0) between AGCCACAGGTACCTGATGGAAATG:W6(V717_D-1) and C:W-1(V741_D-1) removing vertex C:W-1(V741_D-1) was concatenated into AGCCACAGGTACCTGATGGAAATGC:W6(V717_D-1) Want to move edge Edge(741->742,w:6.0)(C:W-1(V741_D-1)->C:W-1(V742_D-1)) to (AGCCACAGGTACCTGATGGAAATGC:W6(V717_D-1)->C:W-1(V742_D-1) adding edge: AGCCACAGGTACCTGATGGAAATGC:W6(V717_D-1) to C:W-1(V742_D-1) removing edge Edge(741->742,w:6.0)(C:W-1(V741_D-1)->C:W-1(V742_D-1)) removing edge Edge(717->741,w:6.0)(AGCCACAGGTACCTGATGGAAATGC:W6(V717_D-1)->C:W-1(V741_D-1)) Found potential edge: Edge(717->742,w:6.0) between AGCCACAGGTACCTGATGGAAATGC:W6(V717_D-1) and C:W-1(V742_D-1) removing vertex C:W-1(V742_D-1) was concatenated into AGCCACAGGTACCTGATGGAAATGCC:W6(V717_D-1) Want to move edge Edge(742->743,w:4.0)(C:W-1(V742_D-1)->G:W-1(V743_D-1)) to (AGCCACAGGTACCTGATGGAAATGCC:W6(V717_D-1)->G:W-1(V743_D-1) adding edge: AGCCACAGGTACCTGATGGAAATGCC:W6(V717_D-1) to G:W-1(V743_D-1) removing edge Edge(742->743,w:4.0)(C:W-1(V742_D-1)->G:W-1(V743_D-1)) removing edge Edge(717->742,w:6.0)(AGCCACAGGTACCTGATGGAAATGCC:W6(V717_D-1)->C:W-1(V742_D-1)) Found potential edge: Edge(717->743,w:4.0) between AGCCACAGGTACCTGATGGAAATGCC:W6(V717_D-1) and G:W-1(V743_D-1) removing vertex G:W-1(V743_D-1) was concatenated into AGCCACAGGTACCTGATGGAAATGCCG:W6(V717_D-1) Want to move edge Edge(743->744,w:4.0)(G:W-1(V743_D-1)->G:W-1(V744_D-1)) to (AGCCACAGGTACCTGATGGAAATGCCG:W6(V717_D-1)->G:W-1(V744_D-1) adding edge: AGCCACAGGTACCTGATGGAAATGCCG:W6(V717_D-1) to G:W-1(V744_D-1) removing edge Edge(743->744,w:4.0)(G:W-1(V743_D-1)->G:W-1(V744_D-1)) removing edge Edge(717->743,w:4.0)(AGCCACAGGTACCTGATGGAAATGCCG:W6(V717_D-1)->G:W-1(V743_D-1)) Found potential edge: Edge(717->744,w:4.0) between AGCCACAGGTACCTGATGGAAATGCCG:W6(V717_D-1) and G:W-1(V744_D-1) removing vertex G:W-1(V744_D-1) was concatenated into AGCCACAGGTACCTGATGGAAATGCCGG:W6(V717_D-1) Want to move edge Edge(744->745,w:4.0)(G:W-1(V744_D-1)->C:W-1(V745_D-1)) to (AGCCACAGGTACCTGATGGAAATGCCGG:W6(V717_D-1)->C:W-1(V745_D-1) adding edge: AGCCACAGGTACCTGATGGAAATGCCGG:W6(V717_D-1) to C:W-1(V745_D-1) removing edge Edge(744->745,w:4.0)(G:W-1(V744_D-1)->C:W-1(V745_D-1)) removing edge Edge(717->744,w:4.0)(AGCCACAGGTACCTGATGGAAATGCCGG:W6(V717_D-1)->G:W-1(V744_D-1)) Found potential edge: Edge(717->745,w:4.0) between AGCCACAGGTACCTGATGGAAATGCCGG:W6(V717_D-1) and C:W-1(V745_D-1) removing vertex C:W-1(V745_D-1) was concatenated into AGCCACAGGTACCTGATGGAAATGCCGGC:W6(V717_D-1) Want to move edge Edge(745->746,w:4.0)(C:W-1(V745_D-1)->T:W-1(V746_D-1)) to (AGCCACAGGTACCTGATGGAAATGCCGGC:W6(V717_D-1)->T:W-1(V746_D-1) adding edge: AGCCACAGGTACCTGATGGAAATGCCGGC:W6(V717_D-1) to T:W-1(V746_D-1) removing edge Edge(745->746,w:4.0)(C:W-1(V745_D-1)->T:W-1(V746_D-1)) removing edge Edge(717->745,w:4.0)(AGCCACAGGTACCTGATGGAAATGCCGGC:W6(V717_D-1)->C:W-1(V745_D-1)) Found potential edge: Edge(717->746,w:4.0) between AGCCACAGGTACCTGATGGAAATGCCGGC:W6(V717_D-1) and T:W-1(V746_D-1) removing vertex T:W-1(V746_D-1) was concatenated into AGCCACAGGTACCTGATGGAAATGCCGGCT:W6(V717_D-1) Want to move edge Edge(746->747,w:4.0)(T:W-1(V746_D-1)->C:W-1(V747_D-1)) to (AGCCACAGGTACCTGATGGAAATGCCGGCT:W6(V717_D-1)->C:W-1(V747_D-1) adding edge: AGCCACAGGTACCTGATGGAAATGCCGGCT:W6(V717_D-1) to C:W-1(V747_D-1) removing edge Edge(746->747,w:4.0)(T:W-1(V746_D-1)->C:W-1(V747_D-1)) removing edge Edge(717->746,w:4.0)(AGCCACAGGTACCTGATGGAAATGCCGGCT:W6(V717_D-1)->T:W-1(V746_D-1)) Found potential edge: Edge(717->747,w:4.0) between AGCCACAGGTACCTGATGGAAATGCCGGCT:W6(V717_D-1) and C:W-1(V747_D-1) removing vertex C:W-1(V747_D-1) was concatenated into AGCCACAGGT...ATGCCGGCTC:W6(V717_D-1) Want to move edge Edge(747->748,w:4.0)(C:W-1(V747_D-1)->A:W-1(V748_D-1)) to (AGCCACAGGT...ATGCCGGCTC:W6(V717_D-1)->A:W-1(V748_D-1) adding edge: AGCCACAGGT...ATGCCGGCTC:W6(V717_D-1) to A:W-1(V748_D-1) removing edge Edge(747->748,w:4.0)(C:W-1(V747_D-1)->A:W-1(V748_D-1)) removing edge Edge(717->747,w:4.0)(AGCCACAGGT...ATGCCGGCTC:W6(V717_D-1)->C:W-1(V747_D-1)) Found potential edge: Edge(717->748,w:4.0) between AGCCACAGGT...ATGCCGGCTC:W6(V717_D-1) and A:W-1(V748_D-1) removing vertex A:W-1(V748_D-1) was concatenated into AGCCACAGGT...TGCCGGCTCA:W6(V717_D-1) Want to move edge Edge(748->749,w:2.0)(A:W-1(V748_D-1)->C:W-1(V749_D-1)) to (AGCCACAGGT...TGCCGGCTCA:W6(V717_D-1)->C:W-1(V749_D-1) adding edge: AGCCACAGGT...TGCCGGCTCA:W6(V717_D-1) to C:W-1(V749_D-1) removing edge Edge(748->749,w:2.0)(A:W-1(V748_D-1)->C:W-1(V749_D-1)) removing edge Edge(717->748,w:4.0)(AGCCACAGGT...TGCCGGCTCA:W6(V717_D-1)->A:W-1(V748_D-1)) Found potential edge: Edge(717->749,w:2.0) between AGCCACAGGT...TGCCGGCTCA:W6(V717_D-1) and C:W-1(V749_D-1) removing vertex C:W-1(V749_D-1) was concatenated into AGCCACAGGT...GCCGGCTCAC:W6(V717_D-1) Want to move edge Edge(749->750,w:2.0)(C:W-1(V749_D-1)->T:W-1(V750_D-1)) to (AGCCACAGGT...GCCGGCTCAC:W6(V717_D-1)->T:W-1(V750_D-1) adding edge: AGCCACAGGT...GCCGGCTCAC:W6(V717_D-1) to T:W-1(V750_D-1) removing edge Edge(749->750,w:2.0)(C:W-1(V749_D-1)->T:W-1(V750_D-1)) removing edge Edge(717->749,w:2.0)(AGCCACAGGT...GCCGGCTCAC:W6(V717_D-1)->C:W-1(V749_D-1)) Found potential edge: Edge(717->750,w:2.0) between AGCCACAGGT...GCCGGCTCAC:W6(V717_D-1) and T:W-1(V750_D-1) removing vertex T:W-1(V750_D-1) was concatenated into AGCCACAGGT...CCGGCTCACT:W5(V717_D-1) Want to move edge Edge(750->751,w:2.0)(T:W-1(V750_D-1)->T:W-1(V751_D-1)) to (AGCCACAGGT...CCGGCTCACT:W5(V717_D-1)->T:W-1(V751_D-1) adding edge: AGCCACAGGT...CCGGCTCACT:W5(V717_D-1) to T:W-1(V751_D-1) removing edge Edge(750->751,w:2.0)(T:W-1(V750_D-1)->T:W-1(V751_D-1)) removing edge Edge(717->750,w:2.0)(AGCCACAGGT...CCGGCTCACT:W5(V717_D-1)->T:W-1(V750_D-1)) Found potential edge: Edge(717->751,w:2.0) between AGCCACAGGT...CCGGCTCACT:W5(V717_D-1) and T:W-1(V751_D-1) removing vertex T:W-1(V751_D-1) was concatenated into AGCCACAGGT...CGGCTCACTT:W5(V717_D-1) Want to move edge Edge(751->752,w:2.0)(T:W-1(V751_D-1)->C:W-1(V752_D-1)) to (AGCCACAGGT...CGGCTCACTT:W5(V717_D-1)->C:W-1(V752_D-1) adding edge: AGCCACAGGT...CGGCTCACTT:W5(V717_D-1) to C:W-1(V752_D-1) removing edge Edge(751->752,w:2.0)(T:W-1(V751_D-1)->C:W-1(V752_D-1)) removing edge Edge(717->751,w:2.0)(AGCCACAGGT...CGGCTCACTT:W5(V717_D-1)->T:W-1(V751_D-1)) Found potential edge: Edge(717->752,w:2.0) between AGCCACAGGT...CGGCTCACTT:W5(V717_D-1) and C:W-1(V752_D-1) removing vertex C:W-1(V752_D-1) was concatenated into AGCCACAGGT...GGCTCACTTC:W5(V717_D-1) Want to move edge Edge(752->753,w:2.0)(C:W-1(V752_D-1)->C:W-1(V753_D-1)) to (AGCCACAGGT...GGCTCACTTC:W5(V717_D-1)->C:W-1(V753_D-1) adding edge: AGCCACAGGT...GGCTCACTTC:W5(V717_D-1) to C:W-1(V753_D-1) removing edge Edge(752->753,w:2.0)(C:W-1(V752_D-1)->C:W-1(V753_D-1)) removing edge Edge(717->752,w:2.0)(AGCCACAGGT...GGCTCACTTC:W5(V717_D-1)->C:W-1(V752_D-1)) Found potential edge: Edge(717->753,w:2.0) between AGCCACAGGT...GGCTCACTTC:W5(V717_D-1) and C:W-1(V753_D-1) removing vertex C:W-1(V753_D-1) was concatenated into AGCCACAGGT...GCTCACTTCC:W5(V717_D-1) Want to move edge Edge(753->754,w:2.0)(C:W-1(V753_D-1)->T:W-1(V754_D-1)) to (AGCCACAGGT...GCTCACTTCC:W5(V717_D-1)->T:W-1(V754_D-1) adding edge: AGCCACAGGT...GCTCACTTCC:W5(V717_D-1) to T:W-1(V754_D-1) removing edge Edge(753->754,w:2.0)(C:W-1(V753_D-1)->T:W-1(V754_D-1)) removing edge Edge(717->753,w:2.0)(AGCCACAGGT...GCTCACTTCC:W5(V717_D-1)->C:W-1(V753_D-1)) Found potential edge: Edge(717->754,w:2.0) between AGCCACAGGT...GCTCACTTCC:W5(V717_D-1) and T:W-1(V754_D-1) removing vertex T:W-1(V754_D-1) was concatenated into AGCCACAGGT...CTCACTTCCT:W5(V717_D-1) Want to move edge Edge(754->755,w:2.0)(T:W-1(V754_D-1)->G:W-1(V755_D-1)) to (AGCCACAGGT...CTCACTTCCT:W5(V717_D-1)->G:W-1(V755_D-1) adding edge: AGCCACAGGT...CTCACTTCCT:W5(V717_D-1) to G:W-1(V755_D-1) removing edge Edge(754->755,w:2.0)(T:W-1(V754_D-1)->G:W-1(V755_D-1)) removing edge Edge(717->754,w:2.0)(AGCCACAGGT...CTCACTTCCT:W5(V717_D-1)->T:W-1(V754_D-1)) Found potential edge: Edge(717->755,w:2.0) between AGCCACAGGT...CTCACTTCCT:W5(V717_D-1) and G:W-1(V755_D-1) removing vertex G:W-1(V755_D-1) was concatenated into AGCCACAGGT...TCACTTCCTG:W5(V717_D-1) Want to move edge Edge(755->756,w:2.0)(G:W-1(V755_D-1)->T:W-1(V756_D-1)) to (AGCCACAGGT...TCACTTCCTG:W5(V717_D-1)->T:W-1(V756_D-1) adding edge: AGCCACAGGT...TCACTTCCTG:W5(V717_D-1) to T:W-1(V756_D-1) removing edge Edge(755->756,w:2.0)(G:W-1(V755_D-1)->T:W-1(V756_D-1)) removing edge Edge(717->755,w:2.0)(AGCCACAGGT...TCACTTCCTG:W5(V717_D-1)->G:W-1(V755_D-1)) Found potential edge: Edge(717->756,w:2.0) between AGCCACAGGT...TCACTTCCTG:W5(V717_D-1) and T:W-1(V756_D-1) removing vertex T:W-1(V756_D-1) was concatenated into AGCCACAGGT...CACTTCCTGT:W5(V717_D-1) Want to move edge Edge(756->757,w:2.0)(T:W-1(V756_D-1)->G:W-1(V757_D-1)) to (AGCCACAGGT...CACTTCCTGT:W5(V717_D-1)->G:W-1(V757_D-1) adding edge: AGCCACAGGT...CACTTCCTGT:W5(V717_D-1) to G:W-1(V757_D-1) removing edge Edge(756->757,w:2.0)(T:W-1(V756_D-1)->G:W-1(V757_D-1)) removing edge Edge(717->756,w:2.0)(AGCCACAGGT...CACTTCCTGT:W5(V717_D-1)->T:W-1(V756_D-1)) Found potential edge: Edge(717->757,w:2.0) between AGCCACAGGT...CACTTCCTGT:W5(V717_D-1) and G:W-1(V757_D-1) removing vertex G:W-1(V757_D-1) was concatenated into AGCCACAGGT...ACTTCCTGTG:W5(V717_D-1) Want to move edge Edge(757->758,w:2.0)(G:W-1(V757_D-1)->A:W-1(V758_D-1)) to (AGCCACAGGT...ACTTCCTGTG:W5(V717_D-1)->A:W-1(V758_D-1) adding edge: AGCCACAGGT...ACTTCCTGTG:W5(V717_D-1) to A:W-1(V758_D-1) removing edge Edge(757->758,w:2.0)(G:W-1(V757_D-1)->A:W-1(V758_D-1)) removing edge Edge(717->757,w:2.0)(AGCCACAGGT...ACTTCCTGTG:W5(V717_D-1)->G:W-1(V757_D-1)) Found potential edge: Edge(717->758,w:2.0) between AGCCACAGGT...ACTTCCTGTG:W5(V717_D-1) and A:W-1(V758_D-1) removing vertex A:W-1(V758_D-1) was concatenated into AGCCACAGGT...CTTCCTGTGA:W5(V717_D-1) removing edge Edge(717->758,w:2.0)(AGCCACAGGT...CTTCCTGTGA:W5(V717_D-1)->A:W-1(V758_D-1)) Found potential edge: Edge(786->787,w:2.0) between GCTAGGGGAAATAGGGGAGCTCCA:W0(V786_D-1) and A:W-1(V787_D-1) removing vertex A:W-1(V787_D-1) was concatenated into GCTAGGGGAAATAGGGGAGCTCCAA:W0(V786_D-1) Want to move edge Edge(787->788,w:2.0)(A:W-1(V787_D-1)->A:W-1(V788_D-1)) to (GCTAGGGGAAATAGGGGAGCTCCAA:W0(V786_D-1)->A:W-1(V788_D-1) adding edge: GCTAGGGGAAATAGGGGAGCTCCAA:W0(V786_D-1) to A:W-1(V788_D-1) removing edge Edge(787->788,w:2.0)(A:W-1(V787_D-1)->A:W-1(V788_D-1)) removing edge Edge(786->787,w:2.0)(GCTAGGGGAAATAGGGGAGCTCCAA:W0(V786_D-1)->A:W-1(V787_D-1)) Found potential edge: Edge(786->788,w:2.0) between GCTAGGGGAAATAGGGGAGCTCCAA:W0(V786_D-1) and A:W-1(V788_D-1) removing vertex A:W-1(V788_D-1) was concatenated into GCTAGGGGAAATAGGGGAGCTCCAAA:W0(V786_D-1) Want to move edge Edge(788->789,w:2.0)(A:W-1(V788_D-1)->C:W-1(V789_D-1)) to (GCTAGGGGAAATAGGGGAGCTCCAAA:W0(V786_D-1)->C:W-1(V789_D-1) adding edge: GCTAGGGGAAATAGGGGAGCTCCAAA:W0(V786_D-1) to C:W-1(V789_D-1) removing edge Edge(788->789,w:2.0)(A:W-1(V788_D-1)->C:W-1(V789_D-1)) removing edge Edge(786->788,w:2.0)(GCTAGGGGAAATAGGGGAGCTCCAAA:W0(V786_D-1)->A:W-1(V788_D-1)) Found potential edge: Edge(786->789,w:2.0) between GCTAGGGGAAATAGGGGAGCTCCAAA:W0(V786_D-1) and C:W-1(V789_D-1) removing vertex C:W-1(V789_D-1) was concatenated into GCTAGGGGAAATAGGGGAGCTCCAAAC:W0(V786_D-1) Want to move edge Edge(789->790,w:2.0)(C:W-1(V789_D-1)->C:W-1(V790_D-1)) to (GCTAGGGGAAATAGGGGAGCTCCAAAC:W0(V786_D-1)->C:W-1(V790_D-1) adding edge: GCTAGGGGAAATAGGGGAGCTCCAAAC:W0(V786_D-1) to C:W-1(V790_D-1) removing edge Edge(789->790,w:2.0)(C:W-1(V789_D-1)->C:W-1(V790_D-1)) removing edge Edge(786->789,w:2.0)(GCTAGGGGAAATAGGGGAGCTCCAAAC:W0(V786_D-1)->C:W-1(V789_D-1)) Found potential edge: Edge(786->790,w:2.0) between GCTAGGGGAAATAGGGGAGCTCCAAAC:W0(V786_D-1) and C:W-1(V790_D-1) removing vertex C:W-1(V790_D-1) was concatenated into GCTAGGGGAAATAGGGGAGCTCCAAACC:W0(V786_D-1) Want to move edge Edge(790->791,w:2.0)(C:W-1(V790_D-1)->C:W-1(V791_D-1)) to (GCTAGGGGAAATAGGGGAGCTCCAAACC:W0(V786_D-1)->C:W-1(V791_D-1) adding edge: GCTAGGGGAAATAGGGGAGCTCCAAACC:W0(V786_D-1) to C:W-1(V791_D-1) removing edge Edge(790->791,w:2.0)(C:W-1(V790_D-1)->C:W-1(V791_D-1)) removing edge Edge(786->790,w:2.0)(GCTAGGGGAAATAGGGGAGCTCCAAACC:W0(V786_D-1)->C:W-1(V790_D-1)) Found potential edge: Edge(786->791,w:2.0) between GCTAGGGGAAATAGGGGAGCTCCAAACC:W0(V786_D-1) and C:W-1(V791_D-1) removing vertex C:W-1(V791_D-1) was concatenated into GCTAGGGGAAATAGGGGAGCTCCAAACCC:W0(V786_D-1) Want to move edge Edge(791->792,w:2.0)(C:W-1(V791_D-1)->A:W-1(V792_D-1)) to (GCTAGGGGAAATAGGGGAGCTCCAAACCC:W0(V786_D-1)->A:W-1(V792_D-1) adding edge: GCTAGGGGAAATAGGGGAGCTCCAAACCC:W0(V786_D-1) to A:W-1(V792_D-1) removing edge Edge(791->792,w:2.0)(C:W-1(V791_D-1)->A:W-1(V792_D-1)) removing edge Edge(786->791,w:2.0)(GCTAGGGGAAATAGGGGAGCTCCAAACCC:W0(V786_D-1)->C:W-1(V791_D-1)) Found potential edge: Edge(786->792,w:2.0) between GCTAGGGGAAATAGGGGAGCTCCAAACCC:W0(V786_D-1) and A:W-1(V792_D-1) removing vertex A:W-1(V792_D-1) was concatenated into GCTAGGGGAAATAGGGGAGCTCCAAACCCA:W0(V786_D-1) Want to move edge Edge(792->793,w:2.0)(A:W-1(V792_D-1)->G:W-1(V793_D-1)) to (GCTAGGGGAAATAGGGGAGCTCCAAACCCA:W0(V786_D-1)->G:W-1(V793_D-1) adding edge: GCTAGGGGAAATAGGGGAGCTCCAAACCCA:W0(V786_D-1) to G:W-1(V793_D-1) removing edge Edge(792->793,w:2.0)(A:W-1(V792_D-1)->G:W-1(V793_D-1)) removing edge Edge(786->792,w:2.0)(GCTAGGGGAAATAGGGGAGCTCCAAACCCA:W0(V786_D-1)->A:W-1(V792_D-1)) Found potential edge: Edge(786->793,w:2.0) between GCTAGGGGAAATAGGGGAGCTCCAAACCCA:W0(V786_D-1) and G:W-1(V793_D-1) removing vertex G:W-1(V793_D-1) was concatenated into GCTAGGGGAA...CCAAACCCAG:W0(V786_D-1) Want to move edge Edge(793->794,w:2.0)(G:W-1(V793_D-1)->C:W-1(V794_D-1)) to (GCTAGGGGAA...CCAAACCCAG:W0(V786_D-1)->C:W-1(V794_D-1) adding edge: GCTAGGGGAA...CCAAACCCAG:W0(V786_D-1) to C:W-1(V794_D-1) removing edge Edge(793->794,w:2.0)(G:W-1(V793_D-1)->C:W-1(V794_D-1)) removing edge Edge(786->793,w:2.0)(GCTAGGGGAA...CCAAACCCAG:W0(V786_D-1)->G:W-1(V793_D-1)) Found potential edge: Edge(786->794,w:2.0) between GCTAGGGGAA...CCAAACCCAG:W0(V786_D-1) and C:W-1(V794_D-1) removing vertex C:W-1(V794_D-1) was concatenated into GCTAGGGGAA...CAAACCCAGC:W1(V786_D-1) Want to move edge Edge(794->795,w:2.0)(C:W-1(V794_D-1)->C:W-1(V795_D-1)) to (GCTAGGGGAA...CAAACCCAGC:W1(V786_D-1)->C:W-1(V795_D-1) adding edge: GCTAGGGGAA...CAAACCCAGC:W1(V786_D-1) to C:W-1(V795_D-1) removing edge Edge(794->795,w:2.0)(C:W-1(V794_D-1)->C:W-1(V795_D-1)) removing edge Edge(786->794,w:2.0)(GCTAGGGGAA...CAAACCCAGC:W1(V786_D-1)->C:W-1(V794_D-1)) Found potential edge: Edge(786->795,w:2.0) between GCTAGGGGAA...CAAACCCAGC:W1(V786_D-1) and C:W-1(V795_D-1) removing vertex C:W-1(V795_D-1) was concatenated into GCTAGGGGAA...AAACCCAGCC:W1(V786_D-1) Want to move edge Edge(795->796,w:2.0)(C:W-1(V795_D-1)->C:W-1(V796_D-1)) to (GCTAGGGGAA...AAACCCAGCC:W1(V786_D-1)->C:W-1(V796_D-1) adding edge: GCTAGGGGAA...AAACCCAGCC:W1(V786_D-1) to C:W-1(V796_D-1) removing edge Edge(795->796,w:2.0)(C:W-1(V795_D-1)->C:W-1(V796_D-1)) removing edge Edge(786->795,w:2.0)(GCTAGGGGAA...AAACCCAGCC:W1(V786_D-1)->C:W-1(V795_D-1)) Found potential edge: Edge(786->796,w:2.0) between GCTAGGGGAA...AAACCCAGCC:W1(V786_D-1) and C:W-1(V796_D-1) removing vertex C:W-1(V796_D-1) was concatenated into GCTAGGGGAA...AACCCAGCCC:W1(V786_D-1) Want to move edge Edge(796->797,w:2.0)(C:W-1(V796_D-1)->C:W-1(V797_D-1)) to (GCTAGGGGAA...AACCCAGCCC:W1(V786_D-1)->C:W-1(V797_D-1) adding edge: GCTAGGGGAA...AACCCAGCCC:W1(V786_D-1) to C:W-1(V797_D-1) removing edge Edge(796->797,w:2.0)(C:W-1(V796_D-1)->C:W-1(V797_D-1)) removing edge Edge(786->796,w:2.0)(GCTAGGGGAA...AACCCAGCCC:W1(V786_D-1)->C:W-1(V796_D-1)) Found potential edge: Edge(786->797,w:2.0) between GCTAGGGGAA...AACCCAGCCC:W1(V786_D-1) and C:W-1(V797_D-1) removing vertex C:W-1(V797_D-1) was concatenated into GCTAGGGGAA...ACCCAGCCCC:W1(V786_D-1) Want to move edge Edge(797->798,w:2.0)(C:W-1(V797_D-1)->G:W-1(V798_D-1)) to (GCTAGGGGAA...ACCCAGCCCC:W1(V786_D-1)->G:W-1(V798_D-1) adding edge: GCTAGGGGAA...ACCCAGCCCC:W1(V786_D-1) to G:W-1(V798_D-1) removing edge Edge(797->798,w:2.0)(C:W-1(V797_D-1)->G:W-1(V798_D-1)) removing edge Edge(786->797,w:2.0)(GCTAGGGGAA...ACCCAGCCCC:W1(V786_D-1)->C:W-1(V797_D-1)) Found potential edge: Edge(786->798,w:2.0) between GCTAGGGGAA...ACCCAGCCCC:W1(V786_D-1) and G:W-1(V798_D-1) removing vertex G:W-1(V798_D-1) was concatenated into GCTAGGGGAA...CCCAGCCCCG:W1(V786_D-1) Want to move edge Edge(798->799,w:2.0)(G:W-1(V798_D-1)->T:W-1(V799_D-1)) to (GCTAGGGGAA...CCCAGCCCCG:W1(V786_D-1)->T:W-1(V799_D-1) adding edge: GCTAGGGGAA...CCCAGCCCCG:W1(V786_D-1) to T:W-1(V799_D-1) removing edge Edge(798->799,w:2.0)(G:W-1(V798_D-1)->T:W-1(V799_D-1)) removing edge Edge(786->798,w:2.0)(GCTAGGGGAA...CCCAGCCCCG:W1(V786_D-1)->G:W-1(V798_D-1)) Found potential edge: Edge(786->799,w:2.0) between GCTAGGGGAA...CCCAGCCCCG:W1(V786_D-1) and T:W-1(V799_D-1) removing vertex T:W-1(V799_D-1) was concatenated into GCTAGGGGAA...CCAGCCCCGT:W1(V786_D-1) Want to move edge Edge(799->800,w:2.0)(T:W-1(V799_D-1)->G:W-1(V800_D-1)) to (GCTAGGGGAA...CCAGCCCCGT:W1(V786_D-1)->G:W-1(V800_D-1) adding edge: GCTAGGGGAA...CCAGCCCCGT:W1(V786_D-1) to G:W-1(V800_D-1) removing edge Edge(799->800,w:2.0)(T:W-1(V799_D-1)->G:W-1(V800_D-1)) removing edge Edge(786->799,w:2.0)(GCTAGGGGAA...CCAGCCCCGT:W1(V786_D-1)->T:W-1(V799_D-1)) Found potential edge: Edge(786->800,w:2.0) between GCTAGGGGAA...CCAGCCCCGT:W1(V786_D-1) and G:W-1(V800_D-1) removing vertex G:W-1(V800_D-1) was concatenated into GCTAGGGGAA...CAGCCCCGTG:W1(V786_D-1) Want to move edge Edge(800->801,w:2.0)(G:W-1(V800_D-1)->G:W-1(V801_D-1)) to (GCTAGGGGAA...CAGCCCCGTG:W1(V786_D-1)->G:W-1(V801_D-1) adding edge: GCTAGGGGAA...CAGCCCCGTG:W1(V786_D-1) to G:W-1(V801_D-1) removing edge Edge(800->801,w:2.0)(G:W-1(V800_D-1)->G:W-1(V801_D-1)) removing edge Edge(786->800,w:2.0)(GCTAGGGGAA...CAGCCCCGTG:W1(V786_D-1)->G:W-1(V800_D-1)) Found potential edge: Edge(786->801,w:2.0) between GCTAGGGGAA...CAGCCCCGTG:W1(V786_D-1) and G:W-1(V801_D-1) removing vertex G:W-1(V801_D-1) was concatenated into GCTAGGGGAA...AGCCCCGTGG:W1(V786_D-1) Want to move edge Edge(801->802,w:2.0)(G:W-1(V801_D-1)->A:W-1(V802_D-1)) to (GCTAGGGGAA...AGCCCCGTGG:W1(V786_D-1)->A:W-1(V802_D-1) adding edge: GCTAGGGGAA...AGCCCCGTGG:W1(V786_D-1) to A:W-1(V802_D-1) removing edge Edge(801->802,w:2.0)(G:W-1(V801_D-1)->A:W-1(V802_D-1)) removing edge Edge(786->801,w:2.0)(GCTAGGGGAA...AGCCCCGTGG:W1(V786_D-1)->G:W-1(V801_D-1)) Found potential edge: Edge(786->802,w:2.0) between GCTAGGGGAA...AGCCCCGTGG:W1(V786_D-1) and A:W-1(V802_D-1) removing vertex A:W-1(V802_D-1) was concatenated into GCTAGGGGAA...GCCCCGTGGA:W1(V786_D-1) Want to move edge Edge(802->803,w:2.0)(A:W-1(V802_D-1)->G:W-1(V803_D-1)) to (GCTAGGGGAA...GCCCCGTGGA:W1(V786_D-1)->G:W-1(V803_D-1) adding edge: GCTAGGGGAA...GCCCCGTGGA:W1(V786_D-1) to G:W-1(V803_D-1) removing edge Edge(802->803,w:2.0)(A:W-1(V802_D-1)->G:W-1(V803_D-1)) removing edge Edge(786->802,w:2.0)(GCTAGGGGAA...GCCCCGTGGA:W1(V786_D-1)->A:W-1(V802_D-1)) Found potential edge: Edge(786->803,w:2.0) between GCTAGGGGAA...GCCCCGTGGA:W1(V786_D-1) and G:W-1(V803_D-1) removing vertex G:W-1(V803_D-1) was concatenated into GCTAGGGGAA...CCCCGTGGAG:W1(V786_D-1) Want to move edge Edge(803->804,w:2.0)(G:W-1(V803_D-1)->G:W-1(V804_D-1)) to (GCTAGGGGAA...CCCCGTGGAG:W1(V786_D-1)->G:W-1(V804_D-1) adding edge: GCTAGGGGAA...CCCCGTGGAG:W1(V786_D-1) to G:W-1(V804_D-1) removing edge Edge(803->804,w:2.0)(G:W-1(V803_D-1)->G:W-1(V804_D-1)) removing edge Edge(786->803,w:2.0)(GCTAGGGGAA...CCCCGTGGAG:W1(V786_D-1)->G:W-1(V803_D-1)) Found potential edge: Edge(786->804,w:2.0) between GCTAGGGGAA...CCCCGTGGAG:W1(V786_D-1) and G:W-1(V804_D-1) removing vertex G:W-1(V804_D-1) was concatenated into GCTAGGGGAA...CCCGTGGAGG:W1(V786_D-1) Want to move edge Edge(804->805,w:2.0)(G:W-1(V804_D-1)->G:W-1(V805_D-1)) to (GCTAGGGGAA...CCCGTGGAGG:W1(V786_D-1)->G:W-1(V805_D-1) adding edge: GCTAGGGGAA...CCCGTGGAGG:W1(V786_D-1) to G:W-1(V805_D-1) removing edge Edge(804->805,w:2.0)(G:W-1(V804_D-1)->G:W-1(V805_D-1)) removing edge Edge(786->804,w:2.0)(GCTAGGGGAA...CCCGTGGAGG:W1(V786_D-1)->G:W-1(V804_D-1)) Found potential edge: Edge(786->805,w:2.0) between GCTAGGGGAA...CCCGTGGAGG:W1(V786_D-1) and G:W-1(V805_D-1) removing vertex G:W-1(V805_D-1) was concatenated into GCTAGGGGAA...CCGTGGAGGG:W1(V786_D-1) Want to move edge Edge(805->806,w:2.0)(G:W-1(V805_D-1)->A:W-1(V806_D-1)) to (GCTAGGGGAA...CCGTGGAGGG:W1(V786_D-1)->A:W-1(V806_D-1) adding edge: GCTAGGGGAA...CCGTGGAGGG:W1(V786_D-1) to A:W-1(V806_D-1) removing edge Edge(805->806,w:2.0)(G:W-1(V805_D-1)->A:W-1(V806_D-1)) removing edge Edge(786->805,w:2.0)(GCTAGGGGAA...CCGTGGAGGG:W1(V786_D-1)->G:W-1(V805_D-1)) Found potential edge: Edge(786->806,w:2.0) between GCTAGGGGAA...CCGTGGAGGG:W1(V786_D-1) and A:W-1(V806_D-1) removing vertex A:W-1(V806_D-1) was concatenated into GCTAGGGGAA...CGTGGAGGGA:W1(V786_D-1) Want to move edge Edge(806->807,w:2.0)(A:W-1(V806_D-1)->G:W-1(V807_D-1)) to (GCTAGGGGAA...CGTGGAGGGA:W1(V786_D-1)->G:W-1(V807_D-1) adding edge: GCTAGGGGAA...CGTGGAGGGA:W1(V786_D-1) to G:W-1(V807_D-1) removing edge Edge(806->807,w:2.0)(A:W-1(V806_D-1)->G:W-1(V807_D-1)) removing edge Edge(786->806,w:2.0)(GCTAGGGGAA...CGTGGAGGGA:W1(V786_D-1)->A:W-1(V806_D-1)) Found potential edge: Edge(786->807,w:2.0) between GCTAGGGGAA...CGTGGAGGGA:W1(V786_D-1) and G:W-1(V807_D-1) removing vertex G:W-1(V807_D-1) was concatenated into GCTAGGGGAA...GTGGAGGGAG:W1(V786_D-1) Want to move edge Edge(807->808,w:2.0)(G:W-1(V807_D-1)->C:W-1(V808_D-1)) to (GCTAGGGGAA...GTGGAGGGAG:W1(V786_D-1)->C:W-1(V808_D-1) adding edge: GCTAGGGGAA...GTGGAGGGAG:W1(V786_D-1) to C:W-1(V808_D-1) removing edge Edge(807->808,w:2.0)(G:W-1(V807_D-1)->C:W-1(V808_D-1)) removing edge Edge(786->807,w:2.0)(GCTAGGGGAA...GTGGAGGGAG:W1(V786_D-1)->G:W-1(V807_D-1)) Found potential edge: Edge(786->808,w:2.0) between GCTAGGGGAA...GTGGAGGGAG:W1(V786_D-1) and C:W-1(V808_D-1) removing vertex C:W-1(V808_D-1) was concatenated into GCTAGGGGAA...TGGAGGGAGC:W1(V786_D-1) Want to move edge Edge(808->809,w:2.0)(C:W-1(V808_D-1)->C:W-1(V809_D-1)) to (GCTAGGGGAA...TGGAGGGAGC:W1(V786_D-1)->C:W-1(V809_D-1) adding edge: GCTAGGGGAA...TGGAGGGAGC:W1(V786_D-1) to C:W-1(V809_D-1) removing edge Edge(808->809,w:2.0)(C:W-1(V808_D-1)->C:W-1(V809_D-1)) removing edge Edge(786->808,w:2.0)(GCTAGGGGAA...TGGAGGGAGC:W1(V786_D-1)->C:W-1(V808_D-1)) Found potential edge: Edge(786->809,w:2.0) between GCTAGGGGAA...TGGAGGGAGC:W1(V786_D-1) and C:W-1(V809_D-1) removing vertex C:W-1(V809_D-1) was concatenated into GCTAGGGGAA...GGAGGGAGCC:W1(V786_D-1) Want to move edge Edge(809->810,w:2.0)(C:W-1(V809_D-1)->A:W-1(V810_D-1)) to (GCTAGGGGAA...GGAGGGAGCC:W1(V786_D-1)->A:W-1(V810_D-1) adding edge: GCTAGGGGAA...GGAGGGAGCC:W1(V786_D-1) to A:W-1(V810_D-1) removing edge Edge(809->810,w:2.0)(C:W-1(V809_D-1)->A:W-1(V810_D-1)) removing edge Edge(786->809,w:2.0)(GCTAGGGGAA...GGAGGGAGCC:W1(V786_D-1)->C:W-1(V809_D-1)) Found potential edge: Edge(786->810,w:2.0) between GCTAGGGGAA...GGAGGGAGCC:W1(V786_D-1) and A:W-1(V810_D-1) removing vertex A:W-1(V810_D-1) was concatenated into GCTAGGGGAA...GAGGGAGCCA:W1(V786_D-1) Want to move edge Edge(810->811,w:2.0)(A:W-1(V810_D-1)->C:W-1(V811_D-1)) to (GCTAGGGGAA...GAGGGAGCCA:W1(V786_D-1)->C:W-1(V811_D-1) adding edge: GCTAGGGGAA...GAGGGAGCCA:W1(V786_D-1) to C:W-1(V811_D-1) removing edge Edge(810->811,w:2.0)(A:W-1(V810_D-1)->C:W-1(V811_D-1)) removing edge Edge(786->810,w:2.0)(GCTAGGGGAA...GAGGGAGCCA:W1(V786_D-1)->A:W-1(V810_D-1)) Found potential edge: Edge(786->811,w:2.0) between GCTAGGGGAA...GAGGGAGCCA:W1(V786_D-1) and C:W-1(V811_D-1) removing vertex C:W-1(V811_D-1) was concatenated into GCTAGGGGAA...AGGGAGCCAC:W1(V786_D-1) Want to move edge Edge(811->812,w:2.0)(C:W-1(V811_D-1)->C:W-1(V812_D-1)) to (GCTAGGGGAA...AGGGAGCCAC:W1(V786_D-1)->C:W-1(V812_D-1) adding edge: GCTAGGGGAA...AGGGAGCCAC:W1(V786_D-1) to C:W-1(V812_D-1) removing edge Edge(811->812,w:2.0)(C:W-1(V811_D-1)->C:W-1(V812_D-1)) removing edge Edge(786->811,w:2.0)(GCTAGGGGAA...AGGGAGCCAC:W1(V786_D-1)->C:W-1(V811_D-1)) Found potential edge: Edge(786->812,w:2.0) between GCTAGGGGAA...AGGGAGCCAC:W1(V786_D-1) and C:W-1(V812_D-1) removing vertex C:W-1(V812_D-1) was concatenated into GCTAGGGGAA...GGGAGCCACC:W1(V786_D-1) Want to move edge Edge(812->717,w:2.0)(C:W-1(V812_D-1)->AGCCACAGGT...CTTCCTGTGA:W5(V717_D-1)) to (GCTAGGGGAA...GGGAGCCACC:W1(V786_D-1)->AGCCACAGGT...CTTCCTGTGA:W5(V717_D-1) adding edge: GCTAGGGGAA...GGGAGCCACC:W1(V786_D-1) to AGCCACAGGT...CTTCCTGTGA:W5(V717_D-1) removing edge Edge(812->717,w:2.0)(C:W-1(V812_D-1)->AGCCACAGGT...CTTCCTGTGA:W5(V717_D-1)) removing edge Edge(786->812,w:2.0)(GCTAGGGGAA...GGGAGCCACC:W1(V786_D-1)->C:W-1(V812_D-1)) Found potential edge: Edge(813->814,w:2.0) between C:W-1(V813_D-1) and A:W-1(V814_D-1) removing vertex A:W-1(V814_D-1) was concatenated into CA:W2(V813_D-1) Want to move edge Edge(814->815,w:2.0)(A:W-1(V814_D-1)->G:W-1(V815_D-1)) to (CA:W2(V813_D-1)->G:W-1(V815_D-1) adding edge: CA:W2(V813_D-1) to G:W-1(V815_D-1) removing edge Edge(814->815,w:2.0)(A:W-1(V814_D-1)->G:W-1(V815_D-1)) removing edge Edge(813->814,w:2.0)(CA:W2(V813_D-1)->A:W-1(V814_D-1)) Found potential edge: Edge(813->815,w:2.0) between CA:W2(V813_D-1) and G:W-1(V815_D-1) removing vertex G:W-1(V815_D-1) was concatenated into CAG:W2(V813_D-1) Want to move edge Edge(815->816,w:2.0)(G:W-1(V815_D-1)->C:W-1(V816_D-1)) to (CAG:W2(V813_D-1)->C:W-1(V816_D-1) adding edge: CAG:W2(V813_D-1) to C:W-1(V816_D-1) removing edge Edge(815->816,w:2.0)(G:W-1(V815_D-1)->C:W-1(V816_D-1)) removing edge Edge(813->815,w:2.0)(CAG:W2(V813_D-1)->G:W-1(V815_D-1)) Found potential edge: Edge(813->816,w:2.0) between CAG:W2(V813_D-1) and C:W-1(V816_D-1) removing vertex C:W-1(V816_D-1) was concatenated into CAGC:W2(V813_D-1) Want to move edge Edge(816->817,w:2.0)(C:W-1(V816_D-1)->A:W-1(V817_D-1)) to (CAGC:W2(V813_D-1)->A:W-1(V817_D-1) adding edge: CAGC:W2(V813_D-1) to A:W-1(V817_D-1) removing edge Edge(816->817,w:2.0)(C:W-1(V816_D-1)->A:W-1(V817_D-1)) removing edge Edge(813->816,w:2.0)(CAGC:W2(V813_D-1)->C:W-1(V816_D-1)) Found potential edge: Edge(813->817,w:2.0) between CAGC:W2(V813_D-1) and A:W-1(V817_D-1) removing vertex A:W-1(V817_D-1) was concatenated into CAGCA:W2(V813_D-1) Want to move edge Edge(817->818,w:2.0)(A:W-1(V817_D-1)->C:W-1(V818_D-1)) to (CAGCA:W2(V813_D-1)->C:W-1(V818_D-1) adding edge: CAGCA:W2(V813_D-1) to C:W-1(V818_D-1) removing edge Edge(817->818,w:2.0)(A:W-1(V817_D-1)->C:W-1(V818_D-1)) removing edge Edge(813->817,w:2.0)(CAGCA:W2(V813_D-1)->A:W-1(V817_D-1)) Found potential edge: Edge(813->818,w:2.0) between CAGCA:W2(V813_D-1) and C:W-1(V818_D-1) removing vertex C:W-1(V818_D-1) was concatenated into CAGCAC:W2(V813_D-1) Want to move edge Edge(818->819,w:2.0)(C:W-1(V818_D-1)->T:W-1(V819_D-1)) to (CAGCAC:W2(V813_D-1)->T:W-1(V819_D-1) adding edge: CAGCAC:W2(V813_D-1) to T:W-1(V819_D-1) removing edge Edge(818->819,w:2.0)(C:W-1(V818_D-1)->T:W-1(V819_D-1)) removing edge Edge(813->818,w:2.0)(CAGCAC:W2(V813_D-1)->C:W-1(V818_D-1)) Found potential edge: Edge(813->819,w:2.0) between CAGCAC:W2(V813_D-1) and T:W-1(V819_D-1) removing vertex T:W-1(V819_D-1) was concatenated into CAGCACT:W2(V813_D-1) Want to move edge Edge(819->820,w:2.0)(T:W-1(V819_D-1)->C:W-1(V820_D-1)) to (CAGCACT:W2(V813_D-1)->C:W-1(V820_D-1) adding edge: CAGCACT:W2(V813_D-1) to C:W-1(V820_D-1) removing edge Edge(819->820,w:2.0)(T:W-1(V819_D-1)->C:W-1(V820_D-1)) removing edge Edge(813->819,w:2.0)(CAGCACT:W2(V813_D-1)->T:W-1(V819_D-1)) Found potential edge: Edge(813->820,w:2.0) between CAGCACT:W2(V813_D-1) and C:W-1(V820_D-1) removing vertex C:W-1(V820_D-1) was concatenated into CAGCACTC:W2(V813_D-1) Want to move edge Edge(820->821,w:2.0)(C:W-1(V820_D-1)->T:W-1(V821_D-1)) to (CAGCACTC:W2(V813_D-1)->T:W-1(V821_D-1) adding edge: CAGCACTC:W2(V813_D-1) to T:W-1(V821_D-1) removing edge Edge(820->821,w:2.0)(C:W-1(V820_D-1)->T:W-1(V821_D-1)) removing edge Edge(813->820,w:2.0)(CAGCACTC:W2(V813_D-1)->C:W-1(V820_D-1)) Found potential edge: Edge(813->821,w:2.0) between CAGCACTC:W2(V813_D-1) and T:W-1(V821_D-1) removing vertex T:W-1(V821_D-1) was concatenated into CAGCACTCT:W2(V813_D-1) Want to move edge Edge(821->822,w:2.0)(T:W-1(V821_D-1)->G:W-1(V822_D-1)) to (CAGCACTCT:W2(V813_D-1)->G:W-1(V822_D-1) adding edge: CAGCACTCT:W2(V813_D-1) to G:W-1(V822_D-1) removing edge Edge(821->822,w:2.0)(T:W-1(V821_D-1)->G:W-1(V822_D-1)) removing edge Edge(813->821,w:2.0)(CAGCACTCT:W2(V813_D-1)->T:W-1(V821_D-1)) Found potential edge: Edge(813->822,w:2.0) between CAGCACTCT:W2(V813_D-1) and G:W-1(V822_D-1) removing vertex G:W-1(V822_D-1) was concatenated into CAGCACTCTG:W2(V813_D-1) Want to move edge Edge(822->823,w:2.0)(G:W-1(V822_D-1)->A:W-1(V823_D-1)) to (CAGCACTCTG:W2(V813_D-1)->A:W-1(V823_D-1) adding edge: CAGCACTCTG:W2(V813_D-1) to A:W-1(V823_D-1) removing edge Edge(822->823,w:2.0)(G:W-1(V822_D-1)->A:W-1(V823_D-1)) removing edge Edge(813->822,w:2.0)(CAGCACTCTG:W2(V813_D-1)->G:W-1(V822_D-1)) Found potential edge: Edge(813->823,w:2.0) between CAGCACTCTG:W2(V813_D-1) and A:W-1(V823_D-1) removing vertex A:W-1(V823_D-1) was concatenated into CAGCACTCTGA:W2(V813_D-1) Want to move edge Edge(823->824,w:2.0)(A:W-1(V823_D-1)->A:W-1(V824_D-1)) to (CAGCACTCTGA:W2(V813_D-1)->A:W-1(V824_D-1) adding edge: CAGCACTCTGA:W2(V813_D-1) to A:W-1(V824_D-1) removing edge Edge(823->824,w:2.0)(A:W-1(V823_D-1)->A:W-1(V824_D-1)) removing edge Edge(813->823,w:2.0)(CAGCACTCTGA:W2(V813_D-1)->A:W-1(V823_D-1)) Found potential edge: Edge(813->824,w:2.0) between CAGCACTCTGA:W2(V813_D-1) and A:W-1(V824_D-1) removing vertex A:W-1(V824_D-1) was concatenated into CAGCACTCTGAA:W2(V813_D-1) Want to move edge Edge(824->825,w:2.0)(A:W-1(V824_D-1)->C:W-1(V825_D-1)) to (CAGCACTCTGAA:W2(V813_D-1)->C:W-1(V825_D-1) adding edge: CAGCACTCTGAA:W2(V813_D-1) to C:W-1(V825_D-1) removing edge Edge(824->825,w:2.0)(A:W-1(V824_D-1)->C:W-1(V825_D-1)) removing edge Edge(813->824,w:2.0)(CAGCACTCTGAA:W2(V813_D-1)->A:W-1(V824_D-1)) Found potential edge: Edge(813->825,w:2.0) between CAGCACTCTGAA:W2(V813_D-1) and C:W-1(V825_D-1) removing vertex C:W-1(V825_D-1) was concatenated into CAGCACTCTGAAC:W2(V813_D-1) Want to move edge Edge(825->826,w:2.0)(C:W-1(V825_D-1)->C:W-1(V826_D-1)) to (CAGCACTCTGAAC:W2(V813_D-1)->C:W-1(V826_D-1) adding edge: CAGCACTCTGAAC:W2(V813_D-1) to C:W-1(V826_D-1) removing edge Edge(825->826,w:2.0)(C:W-1(V825_D-1)->C:W-1(V826_D-1)) removing edge Edge(813->825,w:2.0)(CAGCACTCTGAAC:W2(V813_D-1)->C:W-1(V825_D-1)) Found potential edge: Edge(813->826,w:2.0) between CAGCACTCTGAAC:W2(V813_D-1) and C:W-1(V826_D-1) removing vertex C:W-1(V826_D-1) was concatenated into CAGCACTCTGAACC:W2(V813_D-1) Want to move edge Edge(826->827,w:2.0)(C:W-1(V826_D-1)->C:W-1(V827_D-1)) to (CAGCACTCTGAACC:W2(V813_D-1)->C:W-1(V827_D-1) adding edge: CAGCACTCTGAACC:W2(V813_D-1) to C:W-1(V827_D-1) removing edge Edge(826->827,w:2.0)(C:W-1(V826_D-1)->C:W-1(V827_D-1)) removing edge Edge(813->826,w:2.0)(CAGCACTCTGAACC:W2(V813_D-1)->C:W-1(V826_D-1)) Found potential edge: Edge(813->827,w:2.0) between CAGCACTCTGAACC:W2(V813_D-1) and C:W-1(V827_D-1) removing vertex C:W-1(V827_D-1) was concatenated into CAGCACTCTGAACCC:W2(V813_D-1) Want to move edge Edge(827->828,w:2.0)(C:W-1(V827_D-1)->T:W-1(V828_D-1)) to (CAGCACTCTGAACCC:W2(V813_D-1)->T:W-1(V828_D-1) adding edge: CAGCACTCTGAACCC:W2(V813_D-1) to T:W-1(V828_D-1) removing edge Edge(827->828,w:2.0)(C:W-1(V827_D-1)->T:W-1(V828_D-1)) removing edge Edge(813->827,w:2.0)(CAGCACTCTGAACCC:W2(V813_D-1)->C:W-1(V827_D-1)) Found potential edge: Edge(813->828,w:2.0) between CAGCACTCTGAACCC:W2(V813_D-1) and T:W-1(V828_D-1) removing vertex T:W-1(V828_D-1) was concatenated into CAGCACTCTGAACCCT:W2(V813_D-1) Want to move edge Edge(828->829,w:2.0)(T:W-1(V828_D-1)->G:W-1(V829_D-1)) to (CAGCACTCTGAACCCT:W2(V813_D-1)->G:W-1(V829_D-1) adding edge: CAGCACTCTGAACCCT:W2(V813_D-1) to G:W-1(V829_D-1) removing edge Edge(828->829,w:2.0)(T:W-1(V828_D-1)->G:W-1(V829_D-1)) removing edge Edge(813->828,w:2.0)(CAGCACTCTGAACCCT:W2(V813_D-1)->T:W-1(V828_D-1)) Found potential edge: Edge(813->829,w:2.0) between CAGCACTCTGAACCCT:W2(V813_D-1) and G:W-1(V829_D-1) removing vertex G:W-1(V829_D-1) was concatenated into CAGCACTCTGAACCCTG:W2(V813_D-1) Want to move edge Edge(829->830,w:2.0)(G:W-1(V829_D-1)->T:W-1(V830_D-1)) to (CAGCACTCTGAACCCTG:W2(V813_D-1)->T:W-1(V830_D-1) adding edge: CAGCACTCTGAACCCTG:W2(V813_D-1) to T:W-1(V830_D-1) removing edge Edge(829->830,w:2.0)(G:W-1(V829_D-1)->T:W-1(V830_D-1)) removing edge Edge(813->829,w:2.0)(CAGCACTCTGAACCCTG:W2(V813_D-1)->G:W-1(V829_D-1)) Found potential edge: Edge(813->830,w:2.0) between CAGCACTCTGAACCCTG:W2(V813_D-1) and T:W-1(V830_D-1) removing vertex T:W-1(V830_D-1) was concatenated into CAGCACTCTGAACCCTGT:W2(V813_D-1) Want to move edge Edge(830->831,w:2.0)(T:W-1(V830_D-1)->G:W-1(V831_D-1)) to (CAGCACTCTGAACCCTGT:W2(V813_D-1)->G:W-1(V831_D-1) adding edge: CAGCACTCTGAACCCTGT:W2(V813_D-1) to G:W-1(V831_D-1) removing edge Edge(830->831,w:2.0)(T:W-1(V830_D-1)->G:W-1(V831_D-1)) removing edge Edge(813->830,w:2.0)(CAGCACTCTGAACCCTGT:W2(V813_D-1)->T:W-1(V830_D-1)) Found potential edge: Edge(813->831,w:2.0) between CAGCACTCTGAACCCTGT:W2(V813_D-1) and G:W-1(V831_D-1) removing vertex G:W-1(V831_D-1) was concatenated into CAGCACTCTGAACCCTGTG:W2(V813_D-1) Want to move edge Edge(831->832,w:2.0)(G:W-1(V831_D-1)->A:W-1(V832_D-1)) to (CAGCACTCTGAACCCTGTG:W2(V813_D-1)->A:W-1(V832_D-1) adding edge: CAGCACTCTGAACCCTGTG:W2(V813_D-1) to A:W-1(V832_D-1) removing edge Edge(831->832,w:2.0)(G:W-1(V831_D-1)->A:W-1(V832_D-1)) removing edge Edge(813->831,w:2.0)(CAGCACTCTGAACCCTGTG:W2(V813_D-1)->G:W-1(V831_D-1)) Found potential edge: Edge(813->832,w:2.0) between CAGCACTCTGAACCCTGTG:W2(V813_D-1) and A:W-1(V832_D-1) removing vertex A:W-1(V832_D-1) was concatenated into CAGCACTCTGAACCCTGTGA:W2(V813_D-1) Want to move edge Edge(832->833,w:2.0)(A:W-1(V832_D-1)->G:W-1(V833_D-1)) to (CAGCACTCTGAACCCTGTGA:W2(V813_D-1)->G:W-1(V833_D-1) adding edge: CAGCACTCTGAACCCTGTGA:W2(V813_D-1) to G:W-1(V833_D-1) removing edge Edge(832->833,w:2.0)(A:W-1(V832_D-1)->G:W-1(V833_D-1)) removing edge Edge(813->832,w:2.0)(CAGCACTCTGAACCCTGTGA:W2(V813_D-1)->A:W-1(V832_D-1)) Found potential edge: Edge(813->833,w:2.0) between CAGCACTCTGAACCCTGTGA:W2(V813_D-1) and G:W-1(V833_D-1) removing vertex G:W-1(V833_D-1) was concatenated into CAGCACTCTGAACCCTGTGAG:W2(V813_D-1) Want to move edge Edge(833->834,w:2.0)(G:W-1(V833_D-1)->G:W-1(V834_D-1)) to (CAGCACTCTGAACCCTGTGAG:W2(V813_D-1)->G:W-1(V834_D-1) adding edge: CAGCACTCTGAACCCTGTGAG:W2(V813_D-1) to G:W-1(V834_D-1) removing edge Edge(833->834,w:2.0)(G:W-1(V833_D-1)->G:W-1(V834_D-1)) removing edge Edge(813->833,w:2.0)(CAGCACTCTGAACCCTGTGAG:W2(V813_D-1)->G:W-1(V833_D-1)) Found potential edge: Edge(813->834,w:2.0) between CAGCACTCTGAACCCTGTGAG:W2(V813_D-1) and G:W-1(V834_D-1) removing vertex G:W-1(V834_D-1) was concatenated into CAGCACTCTGAACCCTGTGAGG:W2(V813_D-1) Want to move edge Edge(834->835,w:2.0)(G:W-1(V834_D-1)->C:W-1(V835_D-1)) to (CAGCACTCTGAACCCTGTGAGG:W2(V813_D-1)->C:W-1(V835_D-1) adding edge: CAGCACTCTGAACCCTGTGAGG:W2(V813_D-1) to C:W-1(V835_D-1) removing edge Edge(834->835,w:2.0)(G:W-1(V834_D-1)->C:W-1(V835_D-1)) removing edge Edge(813->834,w:2.0)(CAGCACTCTGAACCCTGTGAGG:W2(V813_D-1)->G:W-1(V834_D-1)) Found potential edge: Edge(813->835,w:2.0) between CAGCACTCTGAACCCTGTGAGG:W2(V813_D-1) and C:W-1(V835_D-1) removing vertex C:W-1(V835_D-1) was concatenated into CAGCACTCTGAACCCTGTGAGGC:W2(V813_D-1) Want to move edge Edge(835->836,w:2.0)(C:W-1(V835_D-1)->A:W-1(V836_D-1)) to (CAGCACTCTGAACCCTGTGAGGC:W2(V813_D-1)->A:W-1(V836_D-1) adding edge: CAGCACTCTGAACCCTGTGAGGC:W2(V813_D-1) to A:W-1(V836_D-1) removing edge Edge(835->836,w:2.0)(C:W-1(V835_D-1)->A:W-1(V836_D-1)) removing edge Edge(813->835,w:2.0)(CAGCACTCTGAACCCTGTGAGGC:W2(V813_D-1)->C:W-1(V835_D-1)) Found potential edge: Edge(813->836,w:2.0) between CAGCACTCTGAACCCTGTGAGGC:W2(V813_D-1) and A:W-1(V836_D-1) removing vertex A:W-1(V836_D-1) was concatenated into CAGCACTCTGAACCCTGTGAGGCA:W2(V813_D-1) Want to move edge Edge(836->549,w:2.0)(A:W-1(V836_D-1)->AGTCCACCAC...GGGAGCCACC:W6(V549_D-1)) to (CAGCACTCTGAACCCTGTGAGGCA:W2(V813_D-1)->AGTCCACCAC...GGGAGCCACC:W6(V549_D-1) adding edge: CAGCACTCTGAACCCTGTGAGGCA:W2(V813_D-1) to AGTCCACCAC...GGGAGCCACC:W6(V549_D-1) removing edge Edge(836->549,w:2.0)(A:W-1(V836_D-1)->AGTCCACCAC...GGGAGCCACC:W6(V549_D-1)) removing edge Edge(813->836,w:2.0)(CAGCACTCTGAACCCTGTGAGGCA:W2(V813_D-1)->A:W-1(V836_D-1)) Found potential edge: Edge(885->886,w:2.0) between G:W-1(V885_D-1) and C:W-1(V886_D-1) removing vertex C:W-1(V886_D-1) was concatenated into GC:W2(V885_D-1) Want to move edge Edge(886->887,w:2.0)(C:W-1(V886_D-1)->T:W-1(V887_D-1)) to (GC:W2(V885_D-1)->T:W-1(V887_D-1) adding edge: GC:W2(V885_D-1) to T:W-1(V887_D-1) removing edge Edge(886->887,w:2.0)(C:W-1(V886_D-1)->T:W-1(V887_D-1)) removing edge Edge(885->886,w:2.0)(GC:W2(V885_D-1)->C:W-1(V886_D-1)) Found potential edge: Edge(885->887,w:2.0) between GC:W2(V885_D-1) and T:W-1(V887_D-1) removing vertex T:W-1(V887_D-1) was concatenated into GCT:W2(V885_D-1) Want to move edge Edge(887->888,w:2.0)(T:W-1(V887_D-1)->C:W-1(V888_D-1)) to (GCT:W2(V885_D-1)->C:W-1(V888_D-1) adding edge: GCT:W2(V885_D-1) to C:W-1(V888_D-1) removing edge Edge(887->888,w:2.0)(T:W-1(V887_D-1)->C:W-1(V888_D-1)) removing edge Edge(885->887,w:2.0)(GCT:W2(V885_D-1)->T:W-1(V887_D-1)) Found potential edge: Edge(885->888,w:2.0) between GCT:W2(V885_D-1) and C:W-1(V888_D-1) removing vertex C:W-1(V888_D-1) was concatenated into GCTC:W2(V885_D-1) Want to move edge Edge(888->889,w:2.0)(C:W-1(V888_D-1)->A:W-1(V889_D-1)) to (GCTC:W2(V885_D-1)->A:W-1(V889_D-1) adding edge: GCTC:W2(V885_D-1) to A:W-1(V889_D-1) removing edge Edge(888->889,w:2.0)(C:W-1(V888_D-1)->A:W-1(V889_D-1)) removing edge Edge(885->888,w:2.0)(GCTC:W2(V885_D-1)->C:W-1(V888_D-1)) Found potential edge: Edge(885->889,w:2.0) between GCTC:W2(V885_D-1) and A:W-1(V889_D-1) removing vertex A:W-1(V889_D-1) was concatenated into GCTCA:W2(V885_D-1) Want to move edge Edge(889->890,w:2.0)(A:W-1(V889_D-1)->T:W-1(V890_D-1)) to (GCTCA:W2(V885_D-1)->T:W-1(V890_D-1) adding edge: GCTCA:W2(V885_D-1) to T:W-1(V890_D-1) removing edge Edge(889->890,w:2.0)(A:W-1(V889_D-1)->T:W-1(V890_D-1)) removing edge Edge(885->889,w:2.0)(GCTCA:W2(V885_D-1)->A:W-1(V889_D-1)) Found potential edge: Edge(885->890,w:2.0) between GCTCA:W2(V885_D-1) and T:W-1(V890_D-1) removing vertex T:W-1(V890_D-1) was concatenated into GCTCAT:W2(V885_D-1) Want to move edge Edge(890->891,w:2.0)(T:W-1(V890_D-1)->C:W-1(V891_D-1)) to (GCTCAT:W2(V885_D-1)->C:W-1(V891_D-1) adding edge: GCTCAT:W2(V885_D-1) to C:W-1(V891_D-1) removing edge Edge(890->891,w:2.0)(T:W-1(V890_D-1)->C:W-1(V891_D-1)) removing edge Edge(885->890,w:2.0)(GCTCAT:W2(V885_D-1)->T:W-1(V890_D-1)) Found potential edge: Edge(885->891,w:2.0) between GCTCAT:W2(V885_D-1) and C:W-1(V891_D-1) removing vertex C:W-1(V891_D-1) was concatenated into GCTCATC:W2(V885_D-1) Want to move edge Edge(891->892,w:2.0)(C:W-1(V891_D-1)->A:W-1(V892_D-1)) to (GCTCATC:W2(V885_D-1)->A:W-1(V892_D-1) adding edge: GCTCATC:W2(V885_D-1) to A:W-1(V892_D-1) removing edge Edge(891->892,w:2.0)(C:W-1(V891_D-1)->A:W-1(V892_D-1)) removing edge Edge(885->891,w:2.0)(GCTCATC:W2(V885_D-1)->C:W-1(V891_D-1)) Found potential edge: Edge(885->892,w:2.0) between GCTCATC:W2(V885_D-1) and A:W-1(V892_D-1) removing vertex A:W-1(V892_D-1) was concatenated into GCTCATCA:W2(V885_D-1) Want to move edge Edge(892->893,w:2.0)(A:W-1(V892_D-1)->G:W-1(V893_D-1)) to (GCTCATCA:W2(V885_D-1)->G:W-1(V893_D-1) adding edge: GCTCATCA:W2(V885_D-1) to G:W-1(V893_D-1) removing edge Edge(892->893,w:2.0)(A:W-1(V892_D-1)->G:W-1(V893_D-1)) removing edge Edge(885->892,w:2.0)(GCTCATCA:W2(V885_D-1)->A:W-1(V892_D-1)) Found potential edge: Edge(885->893,w:2.0) between GCTCATCA:W2(V885_D-1) and G:W-1(V893_D-1) removing vertex G:W-1(V893_D-1) was concatenated into GCTCATCAG:W2(V885_D-1) Want to move edge Edge(893->894,w:2.0)(G:W-1(V893_D-1)->C:W-1(V894_D-1)) to (GCTCATCAG:W2(V885_D-1)->C:W-1(V894_D-1) adding edge: GCTCATCAG:W2(V885_D-1) to C:W-1(V894_D-1) removing edge Edge(893->894,w:2.0)(G:W-1(V893_D-1)->C:W-1(V894_D-1)) removing edge Edge(885->893,w:2.0)(GCTCATCAG:W2(V885_D-1)->G:W-1(V893_D-1)) Found potential edge: Edge(885->894,w:2.0) between GCTCATCAG:W2(V885_D-1) and C:W-1(V894_D-1) removing vertex C:W-1(V894_D-1) was concatenated into GCTCATCAGC:W2(V885_D-1) Want to move edge Edge(894->895,w:2.0)(C:W-1(V894_D-1)->A:W-1(V895_D-1)) to (GCTCATCAGC:W2(V885_D-1)->A:W-1(V895_D-1) adding edge: GCTCATCAGC:W2(V885_D-1) to A:W-1(V895_D-1) removing edge Edge(894->895,w:2.0)(C:W-1(V894_D-1)->A:W-1(V895_D-1)) removing edge Edge(885->894,w:2.0)(GCTCATCAGC:W2(V885_D-1)->C:W-1(V894_D-1)) Found potential edge: Edge(885->895,w:2.0) between GCTCATCAGC:W2(V885_D-1) and A:W-1(V895_D-1) removing vertex A:W-1(V895_D-1) was concatenated into GCTCATCAGCA:W2(V885_D-1) Want to move edge Edge(895->896,w:2.0)(A:W-1(V895_D-1)->A:W-1(V896_D-1)) to (GCTCATCAGCA:W2(V885_D-1)->A:W-1(V896_D-1) adding edge: GCTCATCAGCA:W2(V885_D-1) to A:W-1(V896_D-1) removing edge Edge(895->896,w:2.0)(A:W-1(V895_D-1)->A:W-1(V896_D-1)) removing edge Edge(885->895,w:2.0)(GCTCATCAGCA:W2(V885_D-1)->A:W-1(V895_D-1)) Found potential edge: Edge(885->896,w:2.0) between GCTCATCAGCA:W2(V885_D-1) and A:W-1(V896_D-1) removing vertex A:W-1(V896_D-1) was concatenated into GCTCATCAGCAA:W2(V885_D-1) Want to move edge Edge(896->897,w:2.0)(A:W-1(V896_D-1)->G:W-1(V897_D-1)) to (GCTCATCAGCAA:W2(V885_D-1)->G:W-1(V897_D-1) adding edge: GCTCATCAGCAA:W2(V885_D-1) to G:W-1(V897_D-1) removing edge Edge(896->897,w:2.0)(A:W-1(V896_D-1)->G:W-1(V897_D-1)) removing edge Edge(885->896,w:2.0)(GCTCATCAGCAA:W2(V885_D-1)->A:W-1(V896_D-1)) Found potential edge: Edge(885->897,w:2.0) between GCTCATCAGCAA:W2(V885_D-1) and G:W-1(V897_D-1) removing vertex G:W-1(V897_D-1) was concatenated into GCTCATCAGCAAG:W2(V885_D-1) Want to move edge Edge(897->898,w:2.0)(G:W-1(V897_D-1)->A:W-1(V898_D-1)) to (GCTCATCAGCAAG:W2(V885_D-1)->A:W-1(V898_D-1) adding edge: GCTCATCAGCAAG:W2(V885_D-1) to A:W-1(V898_D-1) removing edge Edge(897->898,w:2.0)(G:W-1(V897_D-1)->A:W-1(V898_D-1)) removing edge Edge(885->897,w:2.0)(GCTCATCAGCAAG:W2(V885_D-1)->G:W-1(V897_D-1)) Found potential edge: Edge(885->898,w:2.0) between GCTCATCAGCAAG:W2(V885_D-1) and A:W-1(V898_D-1) removing vertex A:W-1(V898_D-1) was concatenated into GCTCATCAGCAAGA:W2(V885_D-1) Want to move edge Edge(898->899,w:2.0)(A:W-1(V898_D-1)->A:W-1(V899_D-1)) to (GCTCATCAGCAAGA:W2(V885_D-1)->A:W-1(V899_D-1) adding edge: GCTCATCAGCAAGA:W2(V885_D-1) to A:W-1(V899_D-1) removing edge Edge(898->899,w:2.0)(A:W-1(V898_D-1)->A:W-1(V899_D-1)) removing edge Edge(885->898,w:2.0)(GCTCATCAGCAAGA:W2(V885_D-1)->A:W-1(V898_D-1)) Found potential edge: Edge(885->899,w:2.0) between GCTCATCAGCAAGA:W2(V885_D-1) and A:W-1(V899_D-1) removing vertex A:W-1(V899_D-1) was concatenated into GCTCATCAGCAAGAA:W2(V885_D-1) Want to move edge Edge(899->900,w:2.0)(A:W-1(V899_D-1)->G:W-1(V900_D-1)) to (GCTCATCAGCAAGAA:W2(V885_D-1)->G:W-1(V900_D-1) adding edge: GCTCATCAGCAAGAA:W2(V885_D-1) to G:W-1(V900_D-1) removing edge Edge(899->900,w:2.0)(A:W-1(V899_D-1)->G:W-1(V900_D-1)) removing edge Edge(885->899,w:2.0)(GCTCATCAGCAAGAA:W2(V885_D-1)->A:W-1(V899_D-1)) Found potential edge: Edge(885->900,w:2.0) between GCTCATCAGCAAGAA:W2(V885_D-1) and G:W-1(V900_D-1) removing vertex G:W-1(V900_D-1) was concatenated into GCTCATCAGCAAGAAG:W2(V885_D-1) Want to move edge Edge(900->901,w:2.0)(G:W-1(V900_D-1)->A:W-1(V901_D-1)) to (GCTCATCAGCAAGAAG:W2(V885_D-1)->A:W-1(V901_D-1) adding edge: GCTCATCAGCAAGAAG:W2(V885_D-1) to A:W-1(V901_D-1) removing edge Edge(900->901,w:2.0)(G:W-1(V900_D-1)->A:W-1(V901_D-1)) removing edge Edge(885->900,w:2.0)(GCTCATCAGCAAGAAG:W2(V885_D-1)->G:W-1(V900_D-1)) Found potential edge: Edge(885->901,w:2.0) between GCTCATCAGCAAGAAG:W2(V885_D-1) and A:W-1(V901_D-1) removing vertex A:W-1(V901_D-1) was concatenated into GCTCATCAGCAAGAAGA:W2(V885_D-1) Want to move edge Edge(901->902,w:2.0)(A:W-1(V901_D-1)->A:W-1(V902_D-1)) to (GCTCATCAGCAAGAAGA:W2(V885_D-1)->A:W-1(V902_D-1) adding edge: GCTCATCAGCAAGAAGA:W2(V885_D-1) to A:W-1(V902_D-1) removing edge Edge(901->902,w:2.0)(A:W-1(V901_D-1)->A:W-1(V902_D-1)) removing edge Edge(885->901,w:2.0)(GCTCATCAGCAAGAAGA:W2(V885_D-1)->A:W-1(V901_D-1)) Found potential edge: Edge(885->902,w:2.0) between GCTCATCAGCAAGAAGA:W2(V885_D-1) and A:W-1(V902_D-1) removing vertex A:W-1(V902_D-1) was concatenated into GCTCATCAGCAAGAAGAA:W2(V885_D-1) Want to move edge Edge(902->903,w:2.0)(A:W-1(V902_D-1)->A:W-1(V903_D-1)) to (GCTCATCAGCAAGAAGAA:W2(V885_D-1)->A:W-1(V903_D-1) adding edge: GCTCATCAGCAAGAAGAA:W2(V885_D-1) to A:W-1(V903_D-1) removing edge Edge(902->903,w:2.0)(A:W-1(V902_D-1)->A:W-1(V903_D-1)) removing edge Edge(885->902,w:2.0)(GCTCATCAGCAAGAAGAA:W2(V885_D-1)->A:W-1(V902_D-1)) Found potential edge: Edge(885->903,w:2.0) between GCTCATCAGCAAGAAGAA:W2(V885_D-1) and A:W-1(V903_D-1) removing vertex A:W-1(V903_D-1) was concatenated into GCTCATCAGCAAGAAGAAA:W2(V885_D-1) Want to move edge Edge(903->904,w:2.0)(A:W-1(V903_D-1)->T:W-1(V904_D-1)) to (GCTCATCAGCAAGAAGAAA:W2(V885_D-1)->T:W-1(V904_D-1) adding edge: GCTCATCAGCAAGAAGAAA:W2(V885_D-1) to T:W-1(V904_D-1) removing edge Edge(903->904,w:2.0)(A:W-1(V903_D-1)->T:W-1(V904_D-1)) removing edge Edge(885->903,w:2.0)(GCTCATCAGCAAGAAGAAA:W2(V885_D-1)->A:W-1(V903_D-1)) Found potential edge: Edge(885->904,w:2.0) between GCTCATCAGCAAGAAGAAA:W2(V885_D-1) and T:W-1(V904_D-1) removing vertex T:W-1(V904_D-1) was concatenated into GCTCATCAGCAAGAAGAAAT:W2(V885_D-1) Want to move edge Edge(904->905,w:2.0)(T:W-1(V904_D-1)->C:W-1(V905_D-1)) to (GCTCATCAGCAAGAAGAAAT:W2(V885_D-1)->C:W-1(V905_D-1) adding edge: GCTCATCAGCAAGAAGAAAT:W2(V885_D-1) to C:W-1(V905_D-1) removing edge Edge(904->905,w:2.0)(T:W-1(V904_D-1)->C:W-1(V905_D-1)) removing edge Edge(885->904,w:2.0)(GCTCATCAGCAAGAAGAAAT:W2(V885_D-1)->T:W-1(V904_D-1)) Found potential edge: Edge(885->905,w:2.0) between GCTCATCAGCAAGAAGAAAT:W2(V885_D-1) and C:W-1(V905_D-1) removing vertex C:W-1(V905_D-1) was concatenated into GCTCATCAGCAAGAAGAAATC:W2(V885_D-1) Want to move edge Edge(905->906,w:2.0)(C:W-1(V905_D-1)->T:W-1(V906_D-1)) to (GCTCATCAGCAAGAAGAAATC:W2(V885_D-1)->T:W-1(V906_D-1) adding edge: GCTCATCAGCAAGAAGAAATC:W2(V885_D-1) to T:W-1(V906_D-1) removing edge Edge(905->906,w:2.0)(C:W-1(V905_D-1)->T:W-1(V906_D-1)) removing edge Edge(885->905,w:2.0)(GCTCATCAGCAAGAAGAAATC:W2(V885_D-1)->C:W-1(V905_D-1)) Found potential edge: Edge(885->906,w:2.0) between GCTCATCAGCAAGAAGAAATC:W2(V885_D-1) and T:W-1(V906_D-1) removing vertex T:W-1(V906_D-1) was concatenated into GCTCATCAGCAAGAAGAAATCT:W2(V885_D-1) Want to move edge Edge(906->907,w:2.0)(T:W-1(V906_D-1)->T:W-1(V907_D-1)) to (GCTCATCAGCAAGAAGAAATCT:W2(V885_D-1)->T:W-1(V907_D-1) adding edge: GCTCATCAGCAAGAAGAAATCT:W2(V885_D-1) to T:W-1(V907_D-1) removing edge Edge(906->907,w:2.0)(T:W-1(V906_D-1)->T:W-1(V907_D-1)) removing edge Edge(885->906,w:2.0)(GCTCATCAGCAAGAAGAAATCT:W2(V885_D-1)->T:W-1(V906_D-1)) Found potential edge: Edge(885->907,w:2.0) between GCTCATCAGCAAGAAGAAATCT:W2(V885_D-1) and T:W-1(V907_D-1) removing vertex T:W-1(V907_D-1) was concatenated into GCTCATCAGCAAGAAGAAATCTT:W2(V885_D-1) Want to move edge Edge(907->908,w:2.0)(T:W-1(V907_D-1)->T:W-1(V908_D-1)) to (GCTCATCAGCAAGAAGAAATCTT:W2(V885_D-1)->T:W-1(V908_D-1) adding edge: GCTCATCAGCAAGAAGAAATCTT:W2(V885_D-1) to T:W-1(V908_D-1) removing edge Edge(907->908,w:2.0)(T:W-1(V907_D-1)->T:W-1(V908_D-1)) removing edge Edge(885->907,w:2.0)(GCTCATCAGCAAGAAGAAATCTT:W2(V885_D-1)->T:W-1(V907_D-1)) Found potential edge: Edge(885->908,w:2.0) between GCTCATCAGCAAGAAGAAATCTT:W2(V885_D-1) and T:W-1(V908_D-1) removing vertex T:W-1(V908_D-1) was concatenated into GCTCATCAGCAAGAAGAAATCTTT:W2(V885_D-1) Want to move edge Edge(908->440,w:2.0)(T:W-1(V908_D-1)->CTTTCCAAGTA:W8(V440_D-1)) to (GCTCATCAGCAAGAAGAAATCTTT:W2(V885_D-1)->CTTTCCAAGTA:W8(V440_D-1) adding edge: GCTCATCAGCAAGAAGAAATCTTT:W2(V885_D-1) to CTTTCCAAGTA:W8(V440_D-1) removing edge Edge(908->440,w:2.0)(T:W-1(V908_D-1)->CTTTCCAAGTA:W8(V440_D-1)) removing edge Edge(885->908,w:2.0)(GCTCATCAGCAAGAAGAAATCTTT:W2(V885_D-1)->T:W-1(V908_D-1)) Found potential edge: Edge(945->946,w:2.0) between AGAATACAAAATGCCTTCCTCCAG:W0(V945_D-1) and C:W-1(V946_D-1) removing vertex C:W-1(V946_D-1) was concatenated into AGAATACAAAATGCCTTCCTCCAGC:W0(V945_D-1) Want to move edge Edge(946->947,w:2.0)(C:W-1(V946_D-1)->C:W-1(V947_D-1)) to (AGAATACAAAATGCCTTCCTCCAGC:W0(V945_D-1)->C:W-1(V947_D-1) adding edge: AGAATACAAAATGCCTTCCTCCAGC:W0(V945_D-1) to C:W-1(V947_D-1) removing edge Edge(946->947,w:2.0)(C:W-1(V946_D-1)->C:W-1(V947_D-1)) removing edge Edge(945->946,w:2.0)(AGAATACAAAATGCCTTCCTCCAGC:W0(V945_D-1)->C:W-1(V946_D-1)) Found potential edge: Edge(945->947,w:2.0) between AGAATACAAAATGCCTTCCTCCAGC:W0(V945_D-1) and C:W-1(V947_D-1) removing vertex C:W-1(V947_D-1) was concatenated into AGAATACAAAATGCCTTCCTCCAGCC:W0(V945_D-1) Want to move edge Edge(947->948,w:2.0)(C:W-1(V947_D-1)->T:W-1(V948_D-1)) to (AGAATACAAAATGCCTTCCTCCAGCC:W0(V945_D-1)->T:W-1(V948_D-1) adding edge: AGAATACAAAATGCCTTCCTCCAGCC:W0(V945_D-1) to T:W-1(V948_D-1) removing edge Edge(947->948,w:2.0)(C:W-1(V947_D-1)->T:W-1(V948_D-1)) removing edge Edge(945->947,w:2.0)(AGAATACAAAATGCCTTCCTCCAGCC:W0(V945_D-1)->C:W-1(V947_D-1)) Found potential edge: Edge(945->948,w:2.0) between AGAATACAAAATGCCTTCCTCCAGCC:W0(V945_D-1) and T:W-1(V948_D-1) removing vertex T:W-1(V948_D-1) was concatenated into AGAATACAAAATGCCTTCCTCCAGCCT:W0(V945_D-1) Want to move edge Edge(948->949,w:2.0)(T:W-1(V948_D-1)->C:W-1(V949_D-1)) to (AGAATACAAAATGCCTTCCTCCAGCCT:W0(V945_D-1)->C:W-1(V949_D-1) adding edge: AGAATACAAAATGCCTTCCTCCAGCCT:W0(V945_D-1) to C:W-1(V949_D-1) removing edge Edge(948->949,w:2.0)(T:W-1(V948_D-1)->C:W-1(V949_D-1)) removing edge Edge(945->948,w:2.0)(AGAATACAAAATGCCTTCCTCCAGCCT:W0(V945_D-1)->T:W-1(V948_D-1)) Found potential edge: Edge(945->949,w:2.0) between AGAATACAAAATGCCTTCCTCCAGCCT:W0(V945_D-1) and C:W-1(V949_D-1) removing vertex C:W-1(V949_D-1) was concatenated into AGAATACAAAATGCCTTCCTCCAGCCTC:W0(V945_D-1) Want to move edge Edge(949->950,w:2.0)(C:W-1(V949_D-1)->A:W-1(V950_D-1)) to (AGAATACAAAATGCCTTCCTCCAGCCTC:W0(V945_D-1)->A:W-1(V950_D-1) adding edge: AGAATACAAAATGCCTTCCTCCAGCCTC:W0(V945_D-1) to A:W-1(V950_D-1) removing edge Edge(949->950,w:2.0)(C:W-1(V949_D-1)->A:W-1(V950_D-1)) removing edge Edge(945->949,w:2.0)(AGAATACAAAATGCCTTCCTCCAGCCTC:W0(V945_D-1)->C:W-1(V949_D-1)) Found potential edge: Edge(945->950,w:2.0) between AGAATACAAAATGCCTTCCTCCAGCCTC:W0(V945_D-1) and A:W-1(V950_D-1) removing vertex A:W-1(V950_D-1) was concatenated into AGAATACAAAATGCCTTCCTCCAGCCTCA:W0(V945_D-1) Want to move edge Edge(950->951,w:2.0)(A:W-1(V950_D-1)->T:W-1(V951_D-1)) to (AGAATACAAAATGCCTTCCTCCAGCCTCA:W0(V945_D-1)->T:W-1(V951_D-1) adding edge: AGAATACAAAATGCCTTCCTCCAGCCTCA:W0(V945_D-1) to T:W-1(V951_D-1) removing edge Edge(950->951,w:2.0)(A:W-1(V950_D-1)->T:W-1(V951_D-1)) removing edge Edge(945->950,w:2.0)(AGAATACAAAATGCCTTCCTCCAGCCTCA:W0(V945_D-1)->A:W-1(V950_D-1)) Found potential edge: Edge(945->951,w:2.0) between AGAATACAAAATGCCTTCCTCCAGCCTCA:W0(V945_D-1) and T:W-1(V951_D-1) removing vertex T:W-1(V951_D-1) was concatenated into AGAATACAAAATGCCTTCCTCCAGCCTCAT:W0(V945_D-1) Want to move edge Edge(951->952,w:2.0)(T:W-1(V951_D-1)->C:W-1(V952_D-1)) to (AGAATACAAAATGCCTTCCTCCAGCCTCAT:W0(V945_D-1)->C:W-1(V952_D-1) adding edge: AGAATACAAAATGCCTTCCTCCAGCCTCAT:W0(V945_D-1) to C:W-1(V952_D-1) removing edge Edge(951->952,w:2.0)(T:W-1(V951_D-1)->C:W-1(V952_D-1)) removing edge Edge(945->951,w:2.0)(AGAATACAAAATGCCTTCCTCCAGCCTCAT:W0(V945_D-1)->T:W-1(V951_D-1)) Found potential edge: Edge(945->952,w:2.0) between AGAATACAAAATGCCTTCCTCCAGCCTCAT:W0(V945_D-1) and C:W-1(V952_D-1) removing vertex C:W-1(V952_D-1) was concatenated into AGAATACAAA...CAGCCTCATC:W0(V945_D-1) Want to move edge Edge(952->953,w:2.0)(C:W-1(V952_D-1)->A:W-1(V953_D-1)) to (AGAATACAAA...CAGCCTCATC:W0(V945_D-1)->A:W-1(V953_D-1) adding edge: AGAATACAAA...CAGCCTCATC:W0(V945_D-1) to A:W-1(V953_D-1) removing edge Edge(952->953,w:2.0)(C:W-1(V952_D-1)->A:W-1(V953_D-1)) removing edge Edge(945->952,w:2.0)(AGAATACAAA...CAGCCTCATC:W0(V945_D-1)->C:W-1(V952_D-1)) Found potential edge: Edge(945->953,w:2.0) between AGAATACAAA...CAGCCTCATC:W0(V945_D-1) and A:W-1(V953_D-1) removing vertex A:W-1(V953_D-1) was concatenated into AGAATACAAA...AGCCTCATCA:W1(V945_D-1) Want to move edge Edge(953->954,w:2.0)(A:W-1(V953_D-1)->G:W-1(V954_D-1)) to (AGAATACAAA...AGCCTCATCA:W1(V945_D-1)->G:W-1(V954_D-1) adding edge: AGAATACAAA...AGCCTCATCA:W1(V945_D-1) to G:W-1(V954_D-1) removing edge Edge(953->954,w:2.0)(A:W-1(V953_D-1)->G:W-1(V954_D-1)) removing edge Edge(945->953,w:2.0)(AGAATACAAA...AGCCTCATCA:W1(V945_D-1)->A:W-1(V953_D-1)) Found potential edge: Edge(945->954,w:2.0) between AGAATACAAA...AGCCTCATCA:W1(V945_D-1) and G:W-1(V954_D-1) removing vertex G:W-1(V954_D-1) was concatenated into AGAATACAAA...GCCTCATCAG:W1(V945_D-1) Want to move edge Edge(954->955,w:2.0)(G:W-1(V954_D-1)->C:W-1(V955_D-1)) to (AGAATACAAA...GCCTCATCAG:W1(V945_D-1)->C:W-1(V955_D-1) adding edge: AGAATACAAA...GCCTCATCAG:W1(V945_D-1) to C:W-1(V955_D-1) removing edge Edge(954->955,w:2.0)(G:W-1(V954_D-1)->C:W-1(V955_D-1)) removing edge Edge(945->954,w:2.0)(AGAATACAAA...GCCTCATCAG:W1(V945_D-1)->G:W-1(V954_D-1)) Found potential edge: Edge(945->955,w:2.0) between AGAATACAAA...GCCTCATCAG:W1(V945_D-1) and C:W-1(V955_D-1) removing vertex C:W-1(V955_D-1) was concatenated into AGAATACAAA...CCTCATCAGC:W1(V945_D-1) Want to move edge Edge(955->956,w:2.0)(C:W-1(V955_D-1)->A:W-1(V956_D-1)) to (AGAATACAAA...CCTCATCAGC:W1(V945_D-1)->A:W-1(V956_D-1) adding edge: AGAATACAAA...CCTCATCAGC:W1(V945_D-1) to A:W-1(V956_D-1) removing edge Edge(955->956,w:2.0)(C:W-1(V955_D-1)->A:W-1(V956_D-1)) removing edge Edge(945->955,w:2.0)(AGAATACAAA...CCTCATCAGC:W1(V945_D-1)->C:W-1(V955_D-1)) Found potential edge: Edge(945->956,w:2.0) between AGAATACAAA...CCTCATCAGC:W1(V945_D-1) and A:W-1(V956_D-1) removing vertex A:W-1(V956_D-1) was concatenated into AGAATACAAA...CTCATCAGCA:W1(V945_D-1) Want to move edge Edge(956->957,w:2.0)(A:W-1(V956_D-1)->G:W-1(V957_D-1)) to (AGAATACAAA...CTCATCAGCA:W1(V945_D-1)->G:W-1(V957_D-1) adding edge: AGAATACAAA...CTCATCAGCA:W1(V945_D-1) to G:W-1(V957_D-1) removing edge Edge(956->957,w:2.0)(A:W-1(V956_D-1)->G:W-1(V957_D-1)) removing edge Edge(945->956,w:2.0)(AGAATACAAA...CTCATCAGCA:W1(V945_D-1)->A:W-1(V956_D-1)) Found potential edge: Edge(945->957,w:2.0) between AGAATACAAA...CTCATCAGCA:W1(V945_D-1) and G:W-1(V957_D-1) removing vertex G:W-1(V957_D-1) was concatenated into AGAATACAAA...TCATCAGCAG:W1(V945_D-1) Want to move edge Edge(957->958,w:2.0)(G:W-1(V957_D-1)->G:W-1(V958_D-1)) to (AGAATACAAA...TCATCAGCAG:W1(V945_D-1)->G:W-1(V958_D-1) adding edge: AGAATACAAA...TCATCAGCAG:W1(V945_D-1) to G:W-1(V958_D-1) removing edge Edge(957->958,w:2.0)(G:W-1(V957_D-1)->G:W-1(V958_D-1)) removing edge Edge(945->957,w:2.0)(AGAATACAAA...TCATCAGCAG:W1(V945_D-1)->G:W-1(V957_D-1)) Found potential edge: Edge(945->958,w:2.0) between AGAATACAAA...TCATCAGCAG:W1(V945_D-1) and G:W-1(V958_D-1) removing vertex G:W-1(V958_D-1) was concatenated into AGAATACAAA...CATCAGCAGG:W1(V945_D-1) Want to move edge Edge(958->959,w:2.0)(G:W-1(V958_D-1)->A:W-1(V959_D-1)) to (AGAATACAAA...CATCAGCAGG:W1(V945_D-1)->A:W-1(V959_D-1) adding edge: AGAATACAAA...CATCAGCAGG:W1(V945_D-1) to A:W-1(V959_D-1) removing edge Edge(958->959,w:2.0)(G:W-1(V958_D-1)->A:W-1(V959_D-1)) removing edge Edge(945->958,w:2.0)(AGAATACAAA...CATCAGCAGG:W1(V945_D-1)->G:W-1(V958_D-1)) Found potential edge: Edge(945->959,w:2.0) between AGAATACAAA...CATCAGCAGG:W1(V945_D-1) and A:W-1(V959_D-1) removing vertex A:W-1(V959_D-1) was concatenated into AGAATACAAA...ATCAGCAGGA:W1(V945_D-1) Want to move edge Edge(959->960,w:2.0)(A:W-1(V959_D-1)->A:W-1(V960_D-1)) to (AGAATACAAA...ATCAGCAGGA:W1(V945_D-1)->A:W-1(V960_D-1) adding edge: AGAATACAAA...ATCAGCAGGA:W1(V945_D-1) to A:W-1(V960_D-1) removing edge Edge(959->960,w:2.0)(A:W-1(V959_D-1)->A:W-1(V960_D-1)) removing edge Edge(945->959,w:2.0)(AGAATACAAA...ATCAGCAGGA:W1(V945_D-1)->A:W-1(V959_D-1)) Found potential edge: Edge(945->960,w:2.0) between AGAATACAAA...ATCAGCAGGA:W1(V945_D-1) and A:W-1(V960_D-1) removing vertex A:W-1(V960_D-1) was concatenated into AGAATACAAA...TCAGCAGGAA:W1(V945_D-1) Want to move edge Edge(960->961,w:2.0)(A:W-1(V960_D-1)->G:W-1(V961_D-1)) to (AGAATACAAA...TCAGCAGGAA:W1(V945_D-1)->G:W-1(V961_D-1) adding edge: AGAATACAAA...TCAGCAGGAA:W1(V945_D-1) to G:W-1(V961_D-1) removing edge Edge(960->961,w:2.0)(A:W-1(V960_D-1)->G:W-1(V961_D-1)) removing edge Edge(945->960,w:2.0)(AGAATACAAA...TCAGCAGGAA:W1(V945_D-1)->A:W-1(V960_D-1)) Found potential edge: Edge(945->961,w:2.0) between AGAATACAAA...TCAGCAGGAA:W1(V945_D-1) and G:W-1(V961_D-1) removing vertex G:W-1(V961_D-1) was concatenated into AGAATACAAA...CAGCAGGAAG:W1(V945_D-1) Want to move edge Edge(961->962,w:2.0)(G:W-1(V961_D-1)->A:W-1(V962_D-1)) to (AGAATACAAA...CAGCAGGAAG:W1(V945_D-1)->A:W-1(V962_D-1) adding edge: AGAATACAAA...CAGCAGGAAG:W1(V945_D-1) to A:W-1(V962_D-1) removing edge Edge(961->962,w:2.0)(G:W-1(V961_D-1)->A:W-1(V962_D-1)) removing edge Edge(945->961,w:2.0)(AGAATACAAA...CAGCAGGAAG:W1(V945_D-1)->G:W-1(V961_D-1)) Found potential edge: Edge(945->962,w:2.0) between AGAATACAAA...CAGCAGGAAG:W1(V945_D-1) and A:W-1(V962_D-1) removing vertex A:W-1(V962_D-1) was concatenated into AGAATACAAA...AGCAGGAAGA:W1(V945_D-1) Want to move edge Edge(962->963,w:2.0)(A:W-1(V962_D-1)->A:W-1(V963_D-1)) to (AGAATACAAA...AGCAGGAAGA:W1(V945_D-1)->A:W-1(V963_D-1) adding edge: AGAATACAAA...AGCAGGAAGA:W1(V945_D-1) to A:W-1(V963_D-1) removing edge Edge(962->963,w:2.0)(A:W-1(V962_D-1)->A:W-1(V963_D-1)) removing edge Edge(945->962,w:2.0)(AGAATACAAA...AGCAGGAAGA:W1(V945_D-1)->A:W-1(V962_D-1)) Found potential edge: Edge(945->963,w:2.0) between AGAATACAAA...AGCAGGAAGA:W1(V945_D-1) and A:W-1(V963_D-1) removing vertex A:W-1(V963_D-1) was concatenated into AGAATACAAA...GCAGGAAGAA:W1(V945_D-1) Want to move edge Edge(963->964,w:2.0)(A:W-1(V963_D-1)->A:W-1(V964_D-1)) to (AGAATACAAA...GCAGGAAGAA:W1(V945_D-1)->A:W-1(V964_D-1) adding edge: AGAATACAAA...GCAGGAAGAA:W1(V945_D-1) to A:W-1(V964_D-1) removing edge Edge(963->964,w:2.0)(A:W-1(V963_D-1)->A:W-1(V964_D-1)) removing edge Edge(945->963,w:2.0)(AGAATACAAA...GCAGGAAGAA:W1(V945_D-1)->A:W-1(V963_D-1)) Found potential edge: Edge(945->964,w:2.0) between AGAATACAAA...GCAGGAAGAA:W1(V945_D-1) and A:W-1(V964_D-1) removing vertex A:W-1(V964_D-1) was concatenated into AGAATACAAA...CAGGAAGAAA:W1(V945_D-1) Want to move edge Edge(964->965,w:2.0)(A:W-1(V964_D-1)->T:W-1(V965_D-1)) to (AGAATACAAA...CAGGAAGAAA:W1(V945_D-1)->T:W-1(V965_D-1) adding edge: AGAATACAAA...CAGGAAGAAA:W1(V945_D-1) to T:W-1(V965_D-1) removing edge Edge(964->965,w:2.0)(A:W-1(V964_D-1)->T:W-1(V965_D-1)) removing edge Edge(945->964,w:2.0)(AGAATACAAA...CAGGAAGAAA:W1(V945_D-1)->A:W-1(V964_D-1)) Found potential edge: Edge(945->965,w:2.0) between AGAATACAAA...CAGGAAGAAA:W1(V945_D-1) and T:W-1(V965_D-1) removing vertex T:W-1(V965_D-1) was concatenated into AGAATACAAA...AGGAAGAAAT:W1(V945_D-1) Want to move edge Edge(965->966,w:2.0)(T:W-1(V965_D-1)->C:W-1(V966_D-1)) to (AGAATACAAA...AGGAAGAAAT:W1(V945_D-1)->C:W-1(V966_D-1) adding edge: AGAATACAAA...AGGAAGAAAT:W1(V945_D-1) to C:W-1(V966_D-1) removing edge Edge(965->966,w:2.0)(T:W-1(V965_D-1)->C:W-1(V966_D-1)) removing edge Edge(945->965,w:2.0)(AGAATACAAA...AGGAAGAAAT:W1(V945_D-1)->T:W-1(V965_D-1)) Found potential edge: Edge(945->966,w:2.0) between AGAATACAAA...AGGAAGAAAT:W1(V945_D-1) and C:W-1(V966_D-1) removing vertex C:W-1(V966_D-1) was concatenated into AGAATACAAA...GGAAGAAATC:W1(V945_D-1) Want to move edge Edge(966->967,w:2.0)(C:W-1(V966_D-1)->T:W-1(V967_D-1)) to (AGAATACAAA...GGAAGAAATC:W1(V945_D-1)->T:W-1(V967_D-1) adding edge: AGAATACAAA...GGAAGAAATC:W1(V945_D-1) to T:W-1(V967_D-1) removing edge Edge(966->967,w:2.0)(C:W-1(V966_D-1)->T:W-1(V967_D-1)) removing edge Edge(945->966,w:2.0)(AGAATACAAA...GGAAGAAATC:W1(V945_D-1)->C:W-1(V966_D-1)) Found potential edge: Edge(945->967,w:2.0) between AGAATACAAA...GGAAGAAATC:W1(V945_D-1) and T:W-1(V967_D-1) removing vertex T:W-1(V967_D-1) was concatenated into AGAATACAAA...GAAGAAATCT:W1(V945_D-1) Want to move edge Edge(967->968,w:2.0)(T:W-1(V967_D-1)->T:W-1(V968_D-1)) to (AGAATACAAA...GAAGAAATCT:W1(V945_D-1)->T:W-1(V968_D-1) adding edge: AGAATACAAA...GAAGAAATCT:W1(V945_D-1) to T:W-1(V968_D-1) removing edge Edge(967->968,w:2.0)(T:W-1(V967_D-1)->T:W-1(V968_D-1)) removing edge Edge(945->967,w:2.0)(AGAATACAAA...GAAGAAATCT:W1(V945_D-1)->T:W-1(V967_D-1)) Found potential edge: Edge(945->968,w:2.0) between AGAATACAAA...GAAGAAATCT:W1(V945_D-1) and T:W-1(V968_D-1) removing vertex T:W-1(V968_D-1) was concatenated into AGAATACAAA...AAGAAATCTT:W1(V945_D-1) Want to move edge Edge(968->969,w:2.0)(T:W-1(V968_D-1)->T:W-1(V969_D-1)) to (AGAATACAAA...AAGAAATCTT:W1(V945_D-1)->T:W-1(V969_D-1) adding edge: AGAATACAAA...AAGAAATCTT:W1(V945_D-1) to T:W-1(V969_D-1) removing edge Edge(968->969,w:2.0)(T:W-1(V968_D-1)->T:W-1(V969_D-1)) removing edge Edge(945->968,w:2.0)(AGAATACAAA...AAGAAATCTT:W1(V945_D-1)->T:W-1(V968_D-1)) Found potential edge: Edge(945->969,w:2.0) between AGAATACAAA...AAGAAATCTT:W1(V945_D-1) and T:W-1(V969_D-1) removing vertex T:W-1(V969_D-1) was concatenated into AGAATACAAA...AGAAATCTTT:W1(V945_D-1) Want to move edge Edge(969->970,w:2.0)(T:W-1(V969_D-1)->C:W-1(V970_D-1)) to (AGAATACAAA...AGAAATCTTT:W1(V945_D-1)->C:W-1(V970_D-1) adding edge: AGAATACAAA...AGAAATCTTT:W1(V945_D-1) to C:W-1(V970_D-1) removing edge Edge(969->970,w:2.0)(T:W-1(V969_D-1)->C:W-1(V970_D-1)) removing edge Edge(945->969,w:2.0)(AGAATACAAA...AGAAATCTTT:W1(V945_D-1)->T:W-1(V969_D-1)) Found potential edge: Edge(945->970,w:2.0) between AGAATACAAA...AGAAATCTTT:W1(V945_D-1) and C:W-1(V970_D-1) removing vertex C:W-1(V970_D-1) was concatenated into AGAATACAAA...GAAATCTTTC:W1(V945_D-1) Want to move edge Edge(970->971,w:2.0)(C:W-1(V970_D-1)->T:W-1(V971_D-1)) to (AGAATACAAA...GAAATCTTTC:W1(V945_D-1)->T:W-1(V971_D-1) adding edge: AGAATACAAA...GAAATCTTTC:W1(V945_D-1) to T:W-1(V971_D-1) removing edge Edge(970->971,w:2.0)(C:W-1(V970_D-1)->T:W-1(V971_D-1)) removing edge Edge(945->970,w:2.0)(AGAATACAAA...GAAATCTTTC:W1(V945_D-1)->C:W-1(V970_D-1)) Found potential edge: Edge(945->971,w:2.0) between AGAATACAAA...GAAATCTTTC:W1(V945_D-1) and T:W-1(V971_D-1) removing vertex T:W-1(V971_D-1) was concatenated into AGAATACAAA...AAATCTTTCT:W1(V945_D-1) Want to move edge Edge(971->972,w:2.0)(T:W-1(V971_D-1)->T:W-1(V972_D-1)) to (AGAATACAAA...AAATCTTTCT:W1(V945_D-1)->T:W-1(V972_D-1) adding edge: AGAATACAAA...AAATCTTTCT:W1(V945_D-1) to T:W-1(V972_D-1) removing edge Edge(971->972,w:2.0)(T:W-1(V971_D-1)->T:W-1(V972_D-1)) removing edge Edge(945->971,w:2.0)(AGAATACAAA...AAATCTTTCT:W1(V945_D-1)->T:W-1(V971_D-1)) Found potential edge: Edge(945->972,w:2.0) between AGAATACAAA...AAATCTTTCT:W1(V945_D-1) and T:W-1(V972_D-1) removing vertex T:W-1(V972_D-1) was concatenated into AGAATACAAA...AATCTTTCTT:W1(V945_D-1) Want to move edge Edge(972->973,w:2.0)(T:W-1(V972_D-1)->T:W-1(V973_D-1)) to (AGAATACAAA...AATCTTTCTT:W1(V945_D-1)->T:W-1(V973_D-1) adding edge: AGAATACAAA...AATCTTTCTT:W1(V945_D-1) to T:W-1(V973_D-1) removing edge Edge(972->973,w:2.0)(T:W-1(V972_D-1)->T:W-1(V973_D-1)) removing edge Edge(945->972,w:2.0)(AGAATACAAA...AATCTTTCTT:W1(V945_D-1)->T:W-1(V972_D-1)) Found potential edge: Edge(945->973,w:2.0) between AGAATACAAA...AATCTTTCTT:W1(V945_D-1) and T:W-1(V973_D-1) removing vertex T:W-1(V973_D-1) was concatenated into AGAATACAAA...ATCTTTCTTT:W1(V945_D-1) Want to move edge Edge(973->974,w:2.0)(T:W-1(V973_D-1)->C:W-1(V974_D-1)) to (AGAATACAAA...ATCTTTCTTT:W1(V945_D-1)->C:W-1(V974_D-1) adding edge: AGAATACAAA...ATCTTTCTTT:W1(V945_D-1) to C:W-1(V974_D-1) removing edge Edge(973->974,w:2.0)(T:W-1(V973_D-1)->C:W-1(V974_D-1)) removing edge Edge(945->973,w:2.0)(AGAATACAAA...ATCTTTCTTT:W1(V945_D-1)->T:W-1(V973_D-1)) Found potential edge: Edge(945->974,w:2.0) between AGAATACAAA...ATCTTTCTTT:W1(V945_D-1) and C:W-1(V974_D-1) removing vertex C:W-1(V974_D-1) was concatenated into AGAATACAAA...TCTTTCTTTC:W1(V945_D-1) Want to move edge Edge(974->975,w:2.0)(C:W-1(V974_D-1)->C:W-1(V975_D-1)) to (AGAATACAAA...TCTTTCTTTC:W1(V945_D-1)->C:W-1(V975_D-1) adding edge: AGAATACAAA...TCTTTCTTTC:W1(V945_D-1) to C:W-1(V975_D-1) removing edge Edge(974->975,w:2.0)(C:W-1(V974_D-1)->C:W-1(V975_D-1)) removing edge Edge(945->974,w:2.0)(AGAATACAAA...TCTTTCTTTC:W1(V945_D-1)->C:W-1(V974_D-1)) Found potential edge: Edge(945->975,w:2.0) between AGAATACAAA...TCTTTCTTTC:W1(V945_D-1) and C:W-1(V975_D-1) removing vertex C:W-1(V975_D-1) was concatenated into AGAATACAAA...CTTTCTTTCC:W1(V945_D-1) Want to move edge Edge(975->976,w:2.0)(C:W-1(V975_D-1)->A:W-1(V976_D-1)) to (AGAATACAAA...CTTTCTTTCC:W1(V945_D-1)->A:W-1(V976_D-1) adding edge: AGAATACAAA...CTTTCTTTCC:W1(V945_D-1) to A:W-1(V976_D-1) removing edge Edge(975->976,w:2.0)(C:W-1(V975_D-1)->A:W-1(V976_D-1)) removing edge Edge(945->975,w:2.0)(AGAATACAAA...CTTTCTTTCC:W1(V945_D-1)->C:W-1(V975_D-1)) Found potential edge: Edge(945->976,w:2.0) between AGAATACAAA...CTTTCTTTCC:W1(V945_D-1) and A:W-1(V976_D-1) removing vertex A:W-1(V976_D-1) was concatenated into AGAATACAAA...TTTCTTTCCA:W1(V945_D-1) Want to move edge Edge(976->977,w:2.0)(A:W-1(V976_D-1)->A:W-1(V977_D-1)) to (AGAATACAAA...TTTCTTTCCA:W1(V945_D-1)->A:W-1(V977_D-1) adding edge: AGAATACAAA...TTTCTTTCCA:W1(V945_D-1) to A:W-1(V977_D-1) removing edge Edge(976->977,w:2.0)(A:W-1(V976_D-1)->A:W-1(V977_D-1)) removing edge Edge(945->976,w:2.0)(AGAATACAAA...TTTCTTTCCA:W1(V945_D-1)->A:W-1(V976_D-1)) Found potential edge: Edge(945->977,w:2.0) between AGAATACAAA...TTTCTTTCCA:W1(V945_D-1) and A:W-1(V977_D-1) removing vertex A:W-1(V977_D-1) was concatenated into AGAATACAAA...TTCTTTCCAA:W1(V945_D-1) Want to move edge Edge(977->978,w:2.0)(A:W-1(V977_D-1)->G:W-1(V978_D-1)) to (AGAATACAAA...TTCTTTCCAA:W1(V945_D-1)->G:W-1(V978_D-1) adding edge: AGAATACAAA...TTCTTTCCAA:W1(V945_D-1) to G:W-1(V978_D-1) removing edge Edge(977->978,w:2.0)(A:W-1(V977_D-1)->G:W-1(V978_D-1)) removing edge Edge(945->977,w:2.0)(AGAATACAAA...TTCTTTCCAA:W1(V945_D-1)->A:W-1(V977_D-1)) Found potential edge: Edge(945->978,w:2.0) between AGAATACAAA...TTCTTTCCAA:W1(V945_D-1) and G:W-1(V978_D-1) removing vertex G:W-1(V978_D-1) was concatenated into AGAATACAAA...TCTTTCCAAG:W1(V945_D-1) Want to move edge Edge(978->979,w:2.0)(G:W-1(V978_D-1)->T:W-1(V979_D-1)) to (AGAATACAAA...TCTTTCCAAG:W1(V945_D-1)->T:W-1(V979_D-1) adding edge: AGAATACAAA...TCTTTCCAAG:W1(V945_D-1) to T:W-1(V979_D-1) removing edge Edge(978->979,w:2.0)(G:W-1(V978_D-1)->T:W-1(V979_D-1)) removing edge Edge(945->978,w:2.0)(AGAATACAAA...TCTTTCCAAG:W1(V945_D-1)->G:W-1(V978_D-1)) Found potential edge: Edge(945->979,w:2.0) between AGAATACAAA...TCTTTCCAAG:W1(V945_D-1) and T:W-1(V979_D-1) removing vertex T:W-1(V979_D-1) was concatenated into AGAATACAAA...CTTTCCAAGT:W1(V945_D-1) Want to move edge Edge(979->980,w:2.0)(T:W-1(V979_D-1)->A:W-1(V980_D-1)) to (AGAATACAAA...CTTTCCAAGT:W1(V945_D-1)->A:W-1(V980_D-1) adding edge: AGAATACAAA...CTTTCCAAGT:W1(V945_D-1) to A:W-1(V980_D-1) removing edge Edge(979->980,w:2.0)(T:W-1(V979_D-1)->A:W-1(V980_D-1)) removing edge Edge(945->979,w:2.0)(AGAATACAAA...CTTTCCAAGT:W1(V945_D-1)->T:W-1(V979_D-1)) Found potential edge: Edge(945->980,w:2.0) between AGAATACAAA...CTTTCCAAGT:W1(V945_D-1) and A:W-1(V980_D-1) removing vertex A:W-1(V980_D-1) was concatenated into AGAATACAAA...TTTCCAAGTA:W1(V945_D-1) Want to move edge Edge(980->451,w:2.0)(A:W-1(V980_D-1)->GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1)) to (AGAATACAAA...TTTCCAAGTA:W1(V945_D-1)->GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) adding edge: AGAATACAAA...TTTCCAAGTA:W1(V945_D-1) to GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) removing edge Edge(980->451,w:2.0)(A:W-1(V980_D-1)->GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1)) removing edge Edge(945->980,w:2.0)(AGAATACAAA...TTTCCAAGTA:W1(V945_D-1)->A:W-1(V980_D-1)) ## Node descriptions after linear compaction: ## Node descriptions: GGCCACACGA...CTTCCTCAAG:W2(V380_D-1) Preds: [] Succ: [CCTCATCAGCAAGAAGAAATCTTT:W7(V416_D-1) GCTCATCAGCAAGAAGAAATCTTT:W2(V885_D-1) ] CCTCATCAGCAAGAAGAAATCTTT:W7(V416_D-1) Preds: [GGCCACACGA...CTTCCTCAAG:W2(V380_D-1) ] Succ: [CTTTCCAAGTA:W8(V440_D-1) ] CTTTCCAAGTA:W8(V440_D-1) Preds: [CCTCATCAGCAAGAAGAAATCTTT:W7(V416_D-1) GCTCATCAGCAAGAAGAAATCTTT:W2(V885_D-1) ] Succ: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) ] GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) Preds: [AGAATACAAA...TTTCCAAGTA:W1(V945_D-1) CTTTCCAAGTA:W8(V440_D-1) ] Succ: [GAGCACTCTGAACCCTGTGAGGCA:W6(V525_D-1) CAGCACTCTGAACCCTGTGAGGCA:W2(V813_D-1) ] GAGCACTCTGAACCCTGTGAGGCA:W6(V525_D-1) Preds: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) ] Succ: [AGTCCACCAC...GGGAGCCACC:W6(V549_D-1) ] AGTCCACCAC...GGGAGCCACC:W6(V549_D-1) Preds: [GAGCACTCTGAACCCTGTGAGGCA:W6(V525_D-1) CAGCACTCTGAACCCTGTGAGGCA:W2(V813_D-1) ] Succ: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D-1) ] AGCCACAGGT...CTTCCTGTGA:W5(V717_D-1) Preds: [GCTAGGGGAA...GGGAGCCACC:W1(V786_D-1) AGTCCACCAC...GGGAGCCACC:W6(V549_D-1) ] Succ: [] GCTAGGGGAA...GGGAGCCACC:W1(V786_D-1) Preds: [] Succ: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D-1) ] CAGCACTCTGAACCCTGTGAGGCA:W2(V813_D-1) Preds: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) ] Succ: [AGTCCACCAC...GGGAGCCACC:W6(V549_D-1) ] GCTCATCAGCAAGAAGAAATCTTT:W2(V885_D-1) Preds: [GGCCACACGA...CTTCCTCAAG:W2(V380_D-1) ] Succ: [CTTTCCAAGTA:W8(V440_D-1) ] AGAATACAAA...TTTCCAAGTA:W1(V945_D-1) Preds: [] Succ: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) ] SNP_collapse candidates: GAGCACTCTGAACCCTGTGAGGCA:W6(V525_D2) len: 24 and CAGCACTCTGAACCCTGTGAGGCA:W2(V813_D2) len: 24 SNP_collapse: merging the node 813 to the node 525 SNP_collapse candidates: CCTCATCAGCAAGAAGAAATCTTT:W7(V416_D1) len: 24 and GCTCATCAGCAAGAAGAAATCTTT:W2(V885_D1) len: 24 SNP_collapse: merging the node 885 to the node 416 removing the single nt variation vertex 813 removing the single nt variation vertex 525 removing the single nt variation vertex 885 removing the single nt variation vertex 416 SECTION ==================== Removing small components. ==================== ComponentDivision: 0 contains the following vertices: node_id: 945 node_id: 786 node_id: 451 node_id: 981 node_id: 549 node_id: 982 node_id: 440 node_id: 380 node_id: 717 SubComp: 945 has 9 nodes; total coverage: 2212 average: 4.3118906 number of good components: 1 adding to 380: Location of original node 380 in index 0 adding to 381: Location of original node 380 in index 1 adding to 382: Location of original node 380 in index 2 adding to 383: Location of original node 380 in index 3 adding to 384: Location of original node 380 in index 4 adding to 385: Location of original node 380 in index 5 adding to 386: Location of original node 380 in index 6 adding to 387: Location of original node 380 in index 7 adding to 388: Location of original node 380 in index 8 adding to 389: Location of original node 380 in index 9 adding to 390: Location of original node 380 in index 10 adding to 391: Location of original node 380 in index 11 adding to 392: Location of original node 380 in index 12 adding to 393: Location of original node 380 in index 13 adding to 394: Location of original node 380 in index 14 adding to 395: Location of original node 380 in index 15 adding to 396: Location of original node 380 in index 16 adding to 397: Location of original node 380 in index 17 adding to 398: Location of original node 380 in index 18 adding to 399: Location of original node 380 in index 19 adding to 400: Location of original node 380 in index 20 adding to 401: Location of original node 380 in index 21 adding to 402: Location of original node 380 in index 22 adding to 403: Location of original node 380 in index 23 adding to 404: Location of original node 380 in index 24 adding to 405: Location of original node 380 in index 25 adding to 406: Location of original node 380 in index 26 adding to 407: Location of original node 380 in index 27 adding to 408: Location of original node 380 in index 28 adding to 409: Location of original node 380 in index 29 adding to 410: Location of original node 380 in index 30 adding to 411: Location of original node 380 in index 31 adding to 412: Location of original node 380 in index 32 adding to 413: Location of original node 380 in index 33 adding to 414: Location of original node 380 in index 34 adding to 415: Location of original node 380 in index 35 adding to 440: Location of original node 440 in index 0 adding to 441: Location of original node 440 in index 1 adding to 442: Location of original node 440 in index 2 adding to 443: Location of original node 440 in index 3 adding to 444: Location of original node 440 in index 4 adding to 445: Location of original node 440 in index 5 adding to 446: Location of original node 440 in index 6 adding to 447: Location of original node 440 in index 7 adding to 448: Location of original node 440 in index 8 adding to 449: Location of original node 440 in index 9 adding to 450: Location of original node 440 in index 10 adding to 451: Location of original node 451 in index 0 adding to 452: Location of original node 451 in index 1 adding to 453: Location of original node 451 in index 2 adding to 454: Location of original node 451 in index 3 adding to 455: Location of original node 451 in index 4 adding to 456: Location of original node 451 in index 5 adding to 457: Location of original node 451 in index 6 adding to 458: Location of original node 451 in index 7 adding to 459: Location of original node 451 in index 8 adding to 460: Location of original node 451 in index 9 adding to 461: Location of original node 451 in index 10 adding to 462: Location of original node 451 in index 11 adding to 463: Location of original node 451 in index 12 adding to 464: Location of original node 451 in index 13 adding to 465: Location of original node 451 in index 14 adding to 466: Location of original node 451 in index 15 adding to 467: Location of original node 451 in index 16 adding to 468: Location of original node 451 in index 17 adding to 469: Location of original node 451 in index 18 adding to 470: Location of original node 451 in index 19 adding to 471: Location of original node 451 in index 20 adding to 472: Location of original node 451 in index 21 adding to 473: Location of original node 451 in index 22 adding to 474: Location of original node 451 in index 23 adding to 475: Location of original node 451 in index 24 adding to 476: Location of original node 451 in index 25 adding to 477: Location of original node 451 in index 26 adding to 478: Location of original node 451 in index 27 adding to 479: Location of original node 451 in index 28 adding to 480: Location of original node 451 in index 29 adding to 481: Location of original node 451 in index 30 adding to 482: Location of original node 451 in index 31 adding to 483: Location of original node 451 in index 32 adding to 484: Location of original node 451 in index 33 adding to 485: Location of original node 451 in index 34 adding to 486: Location of original node 451 in index 35 adding to 487: Location of original node 451 in index 36 adding to 488: Location of original node 451 in index 37 adding to 489: Location of original node 451 in index 38 adding to 490: Location of original node 451 in index 39 adding to 491: Location of original node 451 in index 40 adding to 492: Location of original node 451 in index 41 adding to 493: Location of original node 451 in index 42 adding to 494: Location of original node 451 in index 43 adding to 495: Location of original node 451 in index 44 adding to 496: Location of original node 451 in index 45 adding to 497: Location of original node 451 in index 46 adding to 498: Location of original node 451 in index 47 adding to 499: Location of original node 451 in index 48 adding to 500: Location of original node 451 in index 49 adding to 501: Location of original node 451 in index 50 adding to 502: Location of original node 451 in index 51 adding to 503: Location of original node 451 in index 52 adding to 504: Location of original node 451 in index 53 adding to 505: Location of original node 451 in index 54 adding to 506: Location of original node 451 in index 55 adding to 507: Location of original node 451 in index 56 adding to 508: Location of original node 451 in index 57 adding to 509: Location of original node 451 in index 58 adding to 510: Location of original node 451 in index 59 adding to 511: Location of original node 451 in index 60 adding to 512: Location of original node 451 in index 61 adding to 513: Location of original node 451 in index 62 adding to 514: Location of original node 451 in index 63 adding to 515: Location of original node 451 in index 64 adding to 516: Location of original node 451 in index 65 adding to 517: Location of original node 451 in index 66 adding to 518: Location of original node 451 in index 67 adding to 519: Location of original node 451 in index 68 adding to 520: Location of original node 451 in index 69 adding to 521: Location of original node 451 in index 70 adding to 522: Location of original node 451 in index 71 adding to 523: Location of original node 451 in index 72 adding to 524: Location of original node 451 in index 73 adding to 549: Location of original node 549 in index 0 adding to 550: Location of original node 549 in index 1 adding to 551: Location of original node 549 in index 2 adding to 552: Location of original node 549 in index 3 adding to 553: Location of original node 549 in index 4 adding to 554: Location of original node 549 in index 5 adding to 555: Location of original node 549 in index 6 adding to 556: Location of original node 549 in index 7 adding to 557: Location of original node 549 in index 8 adding to 558: Location of original node 549 in index 9 adding to 559: Location of original node 549 in index 10 adding to 560: Location of original node 549 in index 11 adding to 561: Location of original node 549 in index 12 adding to 562: Location of original node 549 in index 13 adding to 563: Location of original node 549 in index 14 adding to 564: Location of original node 549 in index 15 adding to 565: Location of original node 549 in index 16 adding to 566: Location of original node 549 in index 17 adding to 567: Location of original node 549 in index 18 adding to 568: Location of original node 549 in index 19 adding to 569: Location of original node 549 in index 20 adding to 570: Location of original node 549 in index 21 adding to 571: Location of original node 549 in index 22 adding to 572: Location of original node 549 in index 23 adding to 573: Location of original node 549 in index 24 adding to 574: Location of original node 549 in index 25 adding to 575: Location of original node 549 in index 26 adding to 576: Location of original node 549 in index 27 adding to 577: Location of original node 549 in index 28 adding to 578: Location of original node 549 in index 29 adding to 579: Location of original node 549 in index 30 adding to 580: Location of original node 549 in index 31 adding to 581: Location of original node 549 in index 32 adding to 582: Location of original node 549 in index 33 adding to 583: Location of original node 549 in index 34 adding to 584: Location of original node 549 in index 35 adding to 585: Location of original node 549 in index 36 adding to 586: Location of original node 549 in index 37 adding to 587: Location of original node 549 in index 38 adding to 588: Location of original node 549 in index 39 adding to 589: Location of original node 549 in index 40 adding to 590: Location of original node 549 in index 41 adding to 591: Location of original node 549 in index 42 adding to 592: Location of original node 549 in index 43 adding to 593: Location of original node 549 in index 44 adding to 594: Location of original node 549 in index 45 adding to 595: Location of original node 549 in index 46 adding to 596: Location of original node 549 in index 47 adding to 597: Location of original node 549 in index 48 adding to 598: Location of original node 549 in index 49 adding to 599: Location of original node 549 in index 50 adding to 600: Location of original node 549 in index 51 adding to 601: Location of original node 549 in index 52 adding to 602: Location of original node 549 in index 53 adding to 603: Location of original node 549 in index 54 adding to 604: Location of original node 549 in index 55 adding to 605: Location of original node 549 in index 56 adding to 606: Location of original node 549 in index 57 adding to 607: Location of original node 549 in index 58 adding to 608: Location of original node 549 in index 59 adding to 609: Location of original node 549 in index 60 adding to 610: Location of original node 549 in index 61 adding to 611: Location of original node 549 in index 62 adding to 612: Location of original node 549 in index 63 adding to 613: Location of original node 549 in index 64 adding to 614: Location of original node 549 in index 65 adding to 615: Location of original node 549 in index 66 adding to 616: Location of original node 549 in index 67 adding to 617: Location of original node 549 in index 68 adding to 618: Location of original node 549 in index 69 adding to 619: Location of original node 549 in index 70 adding to 620: Location of original node 549 in index 71 adding to 621: Location of original node 549 in index 72 adding to 622: Location of original node 549 in index 73 adding to 623: Location of original node 549 in index 74 adding to 624: Location of original node 549 in index 75 adding to 625: Location of original node 549 in index 76 adding to 626: Location of original node 549 in index 77 adding to 627: Location of original node 549 in index 78 adding to 628: Location of original node 549 in index 79 adding to 629: Location of original node 549 in index 80 adding to 630: Location of original node 549 in index 81 adding to 631: Location of original node 549 in index 82 adding to 632: Location of original node 549 in index 83 adding to 633: Location of original node 549 in index 84 adding to 634: Location of original node 549 in index 85 adding to 635: Location of original node 549 in index 86 adding to 636: Location of original node 549 in index 87 adding to 637: Location of original node 549 in index 88 adding to 638: Location of original node 549 in index 89 adding to 639: Location of original node 549 in index 90 adding to 640: Location of original node 549 in index 91 adding to 641: Location of original node 549 in index 92 adding to 642: Location of original node 549 in index 93 adding to 643: Location of original node 549 in index 94 adding to 644: Location of original node 549 in index 95 adding to 645: Location of original node 549 in index 96 adding to 646: Location of original node 549 in index 97 adding to 647: Location of original node 549 in index 98 adding to 648: Location of original node 549 in index 99 adding to 649: Location of original node 549 in index 100 adding to 650: Location of original node 549 in index 101 adding to 651: Location of original node 549 in index 102 adding to 652: Location of original node 549 in index 103 adding to 653: Location of original node 549 in index 104 adding to 654: Location of original node 549 in index 105 adding to 655: Location of original node 549 in index 106 adding to 656: Location of original node 549 in index 107 adding to 657: Location of original node 549 in index 108 adding to 658: Location of original node 549 in index 109 adding to 659: Location of original node 549 in index 110 adding to 660: Location of original node 549 in index 111 adding to 661: Location of original node 549 in index 112 adding to 662: Location of original node 549 in index 113 adding to 663: Location of original node 549 in index 114 adding to 664: Location of original node 549 in index 115 adding to 665: Location of original node 549 in index 116 adding to 666: Location of original node 549 in index 117 adding to 667: Location of original node 549 in index 118 adding to 668: Location of original node 549 in index 119 adding to 669: Location of original node 549 in index 120 adding to 670: Location of original node 549 in index 121 adding to 671: Location of original node 549 in index 122 adding to 672: Location of original node 549 in index 123 adding to 673: Location of original node 549 in index 124 adding to 674: Location of original node 549 in index 125 adding to 675: Location of original node 549 in index 126 adding to 676: Location of original node 549 in index 127 adding to 677: Location of original node 549 in index 128 adding to 678: Location of original node 549 in index 129 adding to 679: Location of original node 549 in index 130 adding to 680: Location of original node 549 in index 131 adding to 681: Location of original node 549 in index 132 adding to 682: Location of original node 549 in index 133 adding to 683: Location of original node 549 in index 134 adding to 684: Location of original node 549 in index 135 adding to 685: Location of original node 549 in index 136 adding to 686: Location of original node 549 in index 137 adding to 687: Location of original node 549 in index 138 adding to 688: Location of original node 549 in index 139 adding to 689: Location of original node 549 in index 140 adding to 690: Location of original node 549 in index 141 adding to 691: Location of original node 549 in index 142 adding to 692: Location of original node 549 in index 143 adding to 693: Location of original node 549 in index 144 adding to 694: Location of original node 549 in index 145 adding to 695: Location of original node 549 in index 146 adding to 696: Location of original node 549 in index 147 adding to 697: Location of original node 549 in index 148 adding to 698: Location of original node 549 in index 149 adding to 699: Location of original node 549 in index 150 adding to 700: Location of original node 549 in index 151 adding to 701: Location of original node 549 in index 152 adding to 702: Location of original node 549 in index 153 adding to 703: Location of original node 549 in index 154 adding to 704: Location of original node 549 in index 155 adding to 705: Location of original node 549 in index 156 adding to 706: Location of original node 549 in index 157 adding to 707: Location of original node 549 in index 158 adding to 708: Location of original node 549 in index 159 adding to 709: Location of original node 549 in index 160 adding to 710: Location of original node 549 in index 161 adding to 711: Location of original node 549 in index 162 adding to 712: Location of original node 549 in index 163 adding to 713: Location of original node 549 in index 164 adding to 714: Location of original node 549 in index 165 adding to 715: Location of original node 549 in index 166 adding to 716: Location of original node 549 in index 167 adding to 717: Location of original node 717 in index 0 adding to 718: Location of original node 717 in index 1 adding to 719: Location of original node 717 in index 2 adding to 720: Location of original node 717 in index 3 adding to 721: Location of original node 717 in index 4 adding to 722: Location of original node 717 in index 5 adding to 723: Location of original node 717 in index 6 adding to 724: Location of original node 717 in index 7 adding to 725: Location of original node 717 in index 8 adding to 726: Location of original node 717 in index 9 adding to 727: Location of original node 717 in index 10 adding to 728: Location of original node 717 in index 11 adding to 729: Location of original node 717 in index 12 adding to 730: Location of original node 717 in index 13 adding to 731: Location of original node 717 in index 14 adding to 732: Location of original node 717 in index 15 adding to 733: Location of original node 717 in index 16 adding to 734: Location of original node 717 in index 17 adding to 735: Location of original node 717 in index 18 adding to 736: Location of original node 717 in index 19 adding to 737: Location of original node 717 in index 20 adding to 738: Location of original node 717 in index 21 adding to 739: Location of original node 717 in index 22 adding to 740: Location of original node 717 in index 23 adding to 741: Location of original node 717 in index 24 adding to 742: Location of original node 717 in index 25 adding to 743: Location of original node 717 in index 26 adding to 744: Location of original node 717 in index 27 adding to 745: Location of original node 717 in index 28 adding to 746: Location of original node 717 in index 29 adding to 747: Location of original node 717 in index 30 adding to 748: Location of original node 717 in index 31 adding to 749: Location of original node 717 in index 32 adding to 750: Location of original node 717 in index 33 adding to 751: Location of original node 717 in index 34 adding to 752: Location of original node 717 in index 35 adding to 753: Location of original node 717 in index 36 adding to 754: Location of original node 717 in index 37 adding to 755: Location of original node 717 in index 38 adding to 756: Location of original node 717 in index 39 adding to 757: Location of original node 717 in index 40 adding to 758: Location of original node 717 in index 41 adding to 786: Location of original node 786 in index 0 adding to 787: Location of original node 786 in index 1 adding to 788: Location of original node 786 in index 2 adding to 789: Location of original node 786 in index 3 adding to 790: Location of original node 786 in index 4 adding to 791: Location of original node 786 in index 5 adding to 792: Location of original node 786 in index 6 adding to 793: Location of original node 786 in index 7 adding to 794: Location of original node 786 in index 8 adding to 795: Location of original node 786 in index 9 adding to 796: Location of original node 786 in index 10 adding to 797: Location of original node 786 in index 11 adding to 798: Location of original node 786 in index 12 adding to 799: Location of original node 786 in index 13 adding to 800: Location of original node 786 in index 14 adding to 801: Location of original node 786 in index 15 adding to 802: Location of original node 786 in index 16 adding to 803: Location of original node 786 in index 17 adding to 804: Location of original node 786 in index 18 adding to 805: Location of original node 786 in index 19 adding to 806: Location of original node 786 in index 20 adding to 807: Location of original node 786 in index 21 adding to 808: Location of original node 786 in index 22 adding to 809: Location of original node 786 in index 23 adding to 810: Location of original node 786 in index 24 adding to 811: Location of original node 786 in index 25 adding to 812: Location of original node 786 in index 26 adding to 945: Location of original node 945 in index 0 adding to 946: Location of original node 945 in index 1 adding to 947: Location of original node 945 in index 2 adding to 948: Location of original node 945 in index 3 adding to 949: Location of original node 945 in index 4 adding to 950: Location of original node 945 in index 5 adding to 951: Location of original node 945 in index 6 adding to 952: Location of original node 945 in index 7 adding to 953: Location of original node 945 in index 8 adding to 954: Location of original node 945 in index 9 adding to 955: Location of original node 945 in index 10 adding to 956: Location of original node 945 in index 11 adding to 957: Location of original node 945 in index 12 adding to 958: Location of original node 945 in index 13 adding to 959: Location of original node 945 in index 14 adding to 960: Location of original node 945 in index 15 adding to 961: Location of original node 945 in index 16 adding to 962: Location of original node 945 in index 17 adding to 963: Location of original node 945 in index 18 adding to 964: Location of original node 945 in index 19 adding to 965: Location of original node 945 in index 20 adding to 966: Location of original node 945 in index 21 adding to 967: Location of original node 945 in index 22 adding to 968: Location of original node 945 in index 23 adding to 969: Location of original node 945 in index 24 adding to 970: Location of original node 945 in index 25 adding to 971: Location of original node 945 in index 26 adding to 972: Location of original node 945 in index 27 adding to 973: Location of original node 945 in index 28 adding to 974: Location of original node 945 in index 29 adding to 975: Location of original node 945 in index 30 adding to 976: Location of original node 945 in index 31 adding to 977: Location of original node 945 in index 32 adding to 978: Location of original node 945 in index 33 adding to 979: Location of original node 945 in index 34 adding to 980: Location of original node 945 in index 35 adding to 526: Location of original node 981 in index 0 adding to 527: Location of original node 981 in index 1 adding to 528: Location of original node 981 in index 2 adding to 529: Location of original node 981 in index 3 adding to 530: Location of original node 981 in index 4 adding to 531: Location of original node 981 in index 5 adding to 532: Location of original node 981 in index 6 adding to 533: Location of original node 981 in index 7 adding to 534: Location of original node 981 in index 8 adding to 535: Location of original node 981 in index 9 adding to 536: Location of original node 981 in index 10 adding to 537: Location of original node 981 in index 11 adding to 538: Location of original node 981 in index 12 adding to 539: Location of original node 981 in index 13 adding to 540: Location of original node 981 in index 14 adding to 541: Location of original node 981 in index 15 adding to 542: Location of original node 981 in index 16 adding to 543: Location of original node 981 in index 17 adding to 544: Location of original node 981 in index 18 adding to 545: Location of original node 981 in index 19 adding to 546: Location of original node 981 in index 20 adding to 547: Location of original node 981 in index 21 adding to 548: Location of original node 981 in index 22 adding to 417: Location of original node 982 in index 0 adding to 418: Location of original node 982 in index 1 adding to 419: Location of original node 982 in index 2 adding to 420: Location of original node 982 in index 3 adding to 421: Location of original node 982 in index 4 adding to 422: Location of original node 982 in index 5 adding to 423: Location of original node 982 in index 6 adding to 424: Location of original node 982 in index 7 adding to 425: Location of original node 982 in index 8 adding to 426: Location of original node 982 in index 9 adding to 427: Location of original node 982 in index 10 adding to 428: Location of original node 982 in index 11 adding to 429: Location of original node 982 in index 12 adding to 430: Location of original node 982 in index 13 adding to 431: Location of original node 982 in index 14 adding to 432: Location of original node 982 in index 15 adding to 433: Location of original node 982 in index 16 adding to 434: Location of original node 982 in index 17 adding to 435: Location of original node 982 in index 18 adding to 436: Location of original node 982 in index 19 adding to 437: Location of original node 982 in index 20 adding to 438: Location of original node 982 in index 21 adding to 439: Location of original node 982 in index 22 SECTION ================= Node descriptions before threading. =================== NODE_DESCR: GGCCACACGA...CTTCCTCAAG:W2(V380_D0) Preds: [] Succ: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) ] NODE_DESCR: CTTTCCAAGTA:W8(V440_D2) Preds: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) ] Succ: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) ] NODE_DESCR: GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) Preds: [AGAATACAAA...TTTCCAAGTA:W1(V945_D0) CTTTCCAAGTA:W8(V440_D2) ] Succ: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) ] NODE_DESCR: AGTCCACCAC...GGGAGCCACC:W6(V549_D3) Preds: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) ] Succ: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D1) ] NODE_DESCR: AGCCACAGGT...CTTCCTGTGA:W5(V717_D1) Preds: [GCTAGGGGAA...GGGAGCCACC:W1(V786_D0) AGTCCACCAC...GGGAGCCACC:W6(V549_D3) ] Succ: [] NODE_DESCR: GCTAGGGGAA...GGGAGCCACC:W1(V786_D0) Preds: [] Succ: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D1) ] NODE_DESCR: AGAATACAAA...TTTCCAAGTA:W1(V945_D0) Preds: [] Succ: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) ] NODE_DESCR: GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) Preds: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) ] Succ: [AGTCCACCAC...GGGAGCCACC:W6(V549_D3) ] NODE_DESCR: CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) Preds: [GGCCACACGA...CTTCCTCAAG:W2(V380_D0) ] Succ: [CTTTCCAAGTA:W8(V440_D2) ] SECTION ==================== Threading reads through the graph ========================= mapped read [1]Read: >61DFRAAXX100204:1:112:16960:13532/1 0 654 51 705 AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA - Read: 61DFRAAXX100204:1:112:16960:13532 has start: 0, end: 75 and sequence: AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA after extracting substring: AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 105 Threading read: 61DFRAAXX100204:1:112:16960:13532, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:1:112:16960:13532 sequence is: AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA updatePathRecursively(readName=61DFRAAXX100204:1:112:16960:13532, locInSeq: 0 / 75, locInNode: 105 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (61DFRAAXX100204:1:112:16960:13532) AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA 105 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 181 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:1:112:16960:13532 with length: 76 and base [76] ends at position [181] within node: 549 totaling 0 mismatches. FINAL BEST PATH for 61DFRAAXX100204:1:112:16960:13532 is [549] with total mm: 0 Read 61DFRAAXX100204:1:112:16960:13532 seq AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:181,readEnd:76] , trimmed to: [549] Threaded Read as: 61DFRAAXX100204:1:112:16960:13532 : [549] ReadPath@Init: 61DFRAAXX100204:1:112:16960:13532 : [549] mapped read [2]Read: >61DFRAAXX100204:1:113:7690:4285/2 0 538 51 589 GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG - Read: 61DFRAAXX100204:1:113:7690:4285 has start: 0, end: 75 and sequence: GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG after extracting substring: GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG findPathInGraph: V:981, with seq: GGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCA trying to start the mapping to node 981 at position: 12 Threading read: 61DFRAAXX100204:1:113:7690:4285, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:1:113:7690:4285 sequence is: GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG updatePathRecursively(readName=61DFRAAXX100204:1:113:7690:4285, locInSeq: 0 / 75, locInNode: 12 / 46, totalNumMm: 0 trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) -ALIGNING READ SEQ (61DFRAAXX100204:1:113:7690:4285) GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAA 0 To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: GGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCA 12 shortcircuiting the zipper test, too many MM or execeeding local seq divergence *Trying again using full DP alignment: -running Needleman-Wunsch alignment of vertex to read Read 1 -GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCG 49 |||||||||||||||||||||||||||||||||| Vertex 1 GGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCA--------------- 35 vertex end gaps: 15 read end gaps: 0 mismatches encountered: 1 alignment divergence up to seq pos 34 = mm: 1, div:0.029411765 local vertex alignment divergence = 1 / 47 = 0.021276595 Reached end of node sequence. Read61DFRAAXX100204:1:113:7690:4285 base [34] ends at position [47] within node: 981 totaling 1 mismatches. -reached end of vertex: 981, exploring next vertices for continued path extension: [549] Pursuing extension from : GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) to successors: [AGTCCACCAC...GGGAGCCACC:W6(V549_D3)] Exploring extension from node: 981 to node: 549 updatePathRecursively(readName=61DFRAAXX100204:1:113:7690:4285, locInSeq: 34 / 75, locInNode: 23 / 190, totalNumMm: 1 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (61DFRAAXX100204:1:113:7690:4285) AGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG 34 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: AGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 1, div:0.013157895 local vertex alignment divergence = 0 / 65 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:1:113:7690:4285 with length: 76 and base [76] ends at position [65] within node: 549 totaling 0 mismatches. 61DFRAAXX100204:1:113:7690:4285 best path so far from vertex: 981 to : 549 = [549], with total mm: 0 Done with exploring paths from vertex: 981 Paths and scores found are: explored path: [549] w/ mm: 0 AND best selected was: [549] w/ mm: 0 FINAL BEST PATH for 61DFRAAXX100204:1:113:7690:4285 is [981, 549] with total mm: 1 Read 61DFRAAXX100204:1:113:7690:4285 seq GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG threaded as: PATH_N_MM_COUNT: mismatches=1, path= [981, 549] positions: [981,nodeEnd:47,readEnd:34] [549,nodeEnd:65,readEnd:76] , trimmed to: [981, 549] Threaded Read as: 61DFRAAXX100204:1:113:7690:4285 : [981, 549] ReadPath@Init: 61DFRAAXX100204:1:113:7690:4285 : [981, 549] mapped read [3]Read: >61DFRAAXX100204:1:115:8211:5116/2 0 473 51 524 AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG - Read: 61DFRAAXX100204:1:115:8211:5116 has start: 0, end: 75 and sequence: AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG after extracting substring: AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT trying to start the mapping to node 451 at position: 22 Threading read: 61DFRAAXX100204:1:115:8211:5116, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:1:115:8211:5116 sequence is: AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG updatePathRecursively(readName=61DFRAAXX100204:1:115:8211:5116, locInSeq: 0 / 75, locInNode: 22 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (61DFRAAXX100204:1:115:8211:5116) AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 22 zipper alignment mm: 0 alignment divergence up to seq pos 75 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 97 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:1:115:8211:5116 base [75] ends at position [97] within node: 451 totaling 0 mismatches. -reached end of vertex: 451, exploring next vertices for continued path extension: [981] Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] Exploring extension from node: 451 to node: 981 updatePathRecursively(readName=61DFRAAXX100204:1:115:8211:5116, locInSeq: 75 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) -ALIGNING READ SEQ (61DFRAAXX100204:1:115:8211:5116) G 75 To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: G 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 24 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:1:115:8211:5116 with length: 76 and base [76] ends at position [24] within node: 981 totaling 0 mismatches. 61DFRAAXX100204:1:115:8211:5116 best path so far from vertex: 451 to : 981 = [981], with total mm: 0 Done with exploring paths from vertex: 451 Paths and scores found are: explored path: [981] w/ mm: 0 AND best selected was: [981] w/ mm: 0 FINAL BEST PATH for 61DFRAAXX100204:1:115:8211:5116 is [451, 981] with total mm: 0 Read 61DFRAAXX100204:1:115:8211:5116 seq AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [451, 981] positions: [451,nodeEnd:97,readEnd:75] [981,nodeEnd:24,readEnd:76] , trimmed to: [451, 981] Threaded Read as: 61DFRAAXX100204:1:115:8211:5116 : [451, 981] ReadPath@Init: 61DFRAAXX100204:1:115:8211:5116 : [451, 981] mapped read [4]Read: >61DFRAAXX100204:1:20:5538:6890/2 0 567 51 618 AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT - Read: 61DFRAAXX100204:1:20:5538:6890 has start: 0, end: 75 and sequence: AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT after extracting substring: AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 18 Threading read: 61DFRAAXX100204:1:20:5538:6890, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:1:20:5538:6890 sequence is: AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT updatePathRecursively(readName=61DFRAAXX100204:1:20:5538:6890, locInSeq: 0 / 75, locInNode: 18 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (61DFRAAXX100204:1:20:5538:6890) AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT 18 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 94 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:1:20:5538:6890 with length: 76 and base [76] ends at position [94] within node: 549 totaling 0 mismatches. FINAL BEST PATH for 61DFRAAXX100204:1:20:5538:6890 is [549] with total mm: 0 Read 61DFRAAXX100204:1:20:5538:6890 seq AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:94,readEnd:76] , trimmed to: [549] Threaded Read as: 61DFRAAXX100204:1:20:5538:6890 : [549] ReadPath@Init: 61DFRAAXX100204:1:20:5538:6890 : [549] mapped read [5]Read: >61DFRAAXX100204:1:39:8793:18196/1 0 380 51 431 GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA - Read: 61DFRAAXX100204:1:39:8793:18196 has start: 0, end: 75 and sequence: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA after extracting substring: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA findPathInGraph: V:380, with seq: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG trying to start the mapping to node 380 at position: 0 Threading read: 61DFRAAXX100204:1:39:8793:18196, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:1:39:8793:18196 sequence is: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA updatePathRecursively(readName=61DFRAAXX100204:1:39:8793:18196, locInSeq: 0 / 75, locInNode: 0 / 58, totalNumMm: 0 trying to continue the mapping to node GGCCACACGA...CTTCCTCAAG:W2(V380_D0) -ALIGNING READ SEQ (61DFRAAXX100204:1:39:8793:18196) GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG 0 To VERTEX (GGCCACACGA...CTTCCTCAAG:W2(V380_D0)) SEQ: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG 0 zipper alignment mm: 0 alignment divergence up to seq pos 59 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 59 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:1:39:8793:18196 base [59] ends at position [59] within node: 380 totaling 0 mismatches. -reached end of vertex: 380, exploring next vertices for continued path extension: [982] Pursuing extension from : GGCCACACGA...CTTCCTCAAG:W2(V380_D0) to successors: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)] Exploring extension from node: 380 to node: 982 updatePathRecursively(readName=61DFRAAXX100204:1:39:8793:18196, locInSeq: 59 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) -ALIGNING READ SEQ (61DFRAAXX100204:1:39:8793:18196) CCTCATCAGCAAGAAGA 59 To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: CCTCATCAGCAAGAAGA 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 40 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:1:39:8793:18196 with length: 76 and base [76] ends at position [40] within node: 982 totaling 0 mismatches. 61DFRAAXX100204:1:39:8793:18196 best path so far from vertex: 380 to : 982 = [982], with total mm: 0 Done with exploring paths from vertex: 380 Paths and scores found are: explored path: [982] w/ mm: 0 AND best selected was: [982] w/ mm: 0 FINAL BEST PATH for 61DFRAAXX100204:1:39:8793:18196 is [380, 982] with total mm: 0 Read 61DFRAAXX100204:1:39:8793:18196 seq GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [380, 982] positions: [380,nodeEnd:59,readEnd:59] [982,nodeEnd:40,readEnd:76] , trimmed to: [380, 982] Threaded Read as: 61DFRAAXX100204:1:39:8793:18196 : [380, 982] ReadPath@Init: 61DFRAAXX100204:1:39:8793:18196 : [380, 982] mapped read [6]Read: >61DFRAAXX100204:1:39:8793:18196/2 0 502 51 553 GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA - Read: 61DFRAAXX100204:1:39:8793:18196 has start: 0, end: 75 and sequence: GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA after extracting substring: GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT trying to start the mapping to node 451 at position: 51 Threading read: 61DFRAAXX100204:1:39:8793:18196, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:1:39:8793:18196 sequence is: GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA updatePathRecursively(readName=61DFRAAXX100204:1:39:8793:18196, locInSeq: 0 / 75, locInNode: 51 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (61DFRAAXX100204:1:39:8793:18196) GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 51 zipper alignment mm: 0 alignment divergence up to seq pos 46 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 97 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:1:39:8793:18196 base [46] ends at position [97] within node: 451 totaling 0 mismatches. -reached end of vertex: 451, exploring next vertices for continued path extension: [981] Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] Exploring extension from node: 451 to node: 981 updatePathRecursively(readName=61DFRAAXX100204:1:39:8793:18196, locInSeq: 46 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) -ALIGNING READ SEQ (61DFRAAXX100204:1:39:8793:18196) CAGCACTCTGAACCCTGTGAGGCA 46 To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: GAGCACTCTGAACCCTGTGAGGCA 23 zipper alignment mm: 1 alignment divergence up to seq pos 70 = mm: 1, div:0.014285714 local vertex alignment divergence = 1 / 47 = 0.021276595 Reached end of node sequence. Read61DFRAAXX100204:1:39:8793:18196 base [70] ends at position [47] within node: 981 totaling 1 mismatches. -reached end of vertex: 981, exploring next vertices for continued path extension: [549] Pursuing extension from : GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) to successors: [AGTCCACCAC...GGGAGCCACC:W6(V549_D3)] Exploring extension from node: 981 to node: 549 updatePathRecursively(readName=61DFRAAXX100204:1:39:8793:18196, locInSeq: 70 / 75, locInNode: 23 / 190, totalNumMm: 1 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (61DFRAAXX100204:1:39:8793:18196) AGTCCA 70 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: AGTCCA 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 1, div:0.013157895 local vertex alignment divergence = 0 / 29 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:1:39:8793:18196 with length: 76 and base [76] ends at position [29] within node: 549 totaling 0 mismatches. 61DFRAAXX100204:1:39:8793:18196 best path so far from vertex: 981 to : 549 = [549], with total mm: 0 Done with exploring paths from vertex: 981 Paths and scores found are: explored path: [549] w/ mm: 0 AND best selected was: [549] w/ mm: 0 61DFRAAXX100204:1:39:8793:18196 best path so far from vertex: 451 to : 981 = [981, 549], with total mm: 1 Done with exploring paths from vertex: 451 Paths and scores found are: explored path: [981, 549] w/ mm: 1 AND best selected was: [981, 549] w/ mm: 1 FINAL BEST PATH for 61DFRAAXX100204:1:39:8793:18196 is [451, 981, 549] with total mm: 1 Read 61DFRAAXX100204:1:39:8793:18196 seq GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA threaded as: PATH_N_MM_COUNT: mismatches=1, path= [451, 981, 549] positions: [451,nodeEnd:97,readEnd:46] [981,nodeEnd:47,readEnd:70] [549,nodeEnd:29,readEnd:76] , trimmed to: [451, 981, 549] Threaded Read as: 61DFRAAXX100204:1:39:8793:18196 : [451, 981, 549] ReadPath@Init: 61DFRAAXX100204:1:39:8793:18196 : [451, 981, 549] mapped read [7]Read: >61DFRAAXX100204:1:67:9991:2232/1 0 401 51 452 GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG - Read: 61DFRAAXX100204:1:67:9991:2232 has start: 0, end: 75 and sequence: GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG after extracting substring: GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG findPathInGraph: V:380, with seq: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG trying to start the mapping to node 380 at position: 21 Threading read: 61DFRAAXX100204:1:67:9991:2232, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:1:67:9991:2232 sequence is: GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG updatePathRecursively(readName=61DFRAAXX100204:1:67:9991:2232, locInSeq: 0 / 75, locInNode: 21 / 58, totalNumMm: 0 trying to continue the mapping to node GGCCACACGA...CTTCCTCAAG:W2(V380_D0) -ALIGNING READ SEQ (61DFRAAXX100204:1:67:9991:2232) GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG 0 To VERTEX (GGCCACACGA...CTTCCTCAAG:W2(V380_D0)) SEQ: GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG 21 zipper alignment mm: 0 alignment divergence up to seq pos 38 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 59 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:1:67:9991:2232 base [38] ends at position [59] within node: 380 totaling 0 mismatches. -reached end of vertex: 380, exploring next vertices for continued path extension: [982] Pursuing extension from : GGCCACACGA...CTTCCTCAAG:W2(V380_D0) to successors: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)] Exploring extension from node: 380 to node: 982 updatePathRecursively(readName=61DFRAAXX100204:1:67:9991:2232, locInSeq: 38 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) -ALIGNING READ SEQ (61DFRAAXX100204:1:67:9991:2232) CCTCATCAGCAAGAAGAAATCTTT 38 To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: CCTCATCAGCAAGAAGAAATCTTT 23 zipper alignment mm: 0 alignment divergence up to seq pos 62 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 47 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:1:67:9991:2232 base [62] ends at position [47] within node: 982 totaling 0 mismatches. -reached end of vertex: 982, exploring next vertices for continued path extension: [440] Pursuing extension from : CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) to successors: [CTTTCCAAGTA:W8(V440_D2)] Exploring extension from node: 982 to node: 440 updatePathRecursively(readName=61DFRAAXX100204:1:67:9991:2232, locInSeq: 62 / 75, locInNode: 23 / 33, totalNumMm: 0 trying to continue the mapping to node CTTTCCAAGTA:W8(V440_D2) -ALIGNING READ SEQ (61DFRAAXX100204:1:67:9991:2232) CTTTCCAAGTA 62 To VERTEX (CTTTCCAAGTA:W8(V440_D2)) SEQ: CTTTCCAAGTA 23 zipper alignment mm: 0 alignment divergence up to seq pos 73 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 34 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:1:67:9991:2232 base [73] ends at position [34] within node: 440 totaling 0 mismatches. -reached end of vertex: 440, exploring next vertices for continued path extension: [451] Pursuing extension from : CTTTCCAAGTA:W8(V440_D2) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] Exploring extension from node: 440 to node: 451 updatePathRecursively(readName=61DFRAAXX100204:1:67:9991:2232, locInSeq: 73 / 75, locInNode: 23 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (61DFRAAXX100204:1:67:9991:2232) GTG 73 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: GTG 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 26 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:1:67:9991:2232 with length: 76 and base [76] ends at position [26] within node: 451 totaling 0 mismatches. 61DFRAAXX100204:1:67:9991:2232 best path so far from vertex: 440 to : 451 = [451], with total mm: 0 Done with exploring paths from vertex: 440 Paths and scores found are: explored path: [451] w/ mm: 0 AND best selected was: [451] w/ mm: 0 61DFRAAXX100204:1:67:9991:2232 best path so far from vertex: 982 to : 440 = [440, 451], with total mm: 0 Done with exploring paths from vertex: 982 Paths and scores found are: explored path: [440, 451] w/ mm: 0 AND best selected was: [440, 451] w/ mm: 0 61DFRAAXX100204:1:67:9991:2232 best path so far from vertex: 380 to : 982 = [982, 440, 451], with total mm: 0 Done with exploring paths from vertex: 380 Paths and scores found are: explored path: [982, 440, 451] w/ mm: 0 AND best selected was: [982, 440, 451] w/ mm: 0 FINAL BEST PATH for 61DFRAAXX100204:1:67:9991:2232 is [380, 982, 440, 451] with total mm: 0 Read 61DFRAAXX100204:1:67:9991:2232 seq GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [380, 982, 440, 451] positions: [380,nodeEnd:59,readEnd:38] [982,nodeEnd:47,readEnd:62] [440,nodeEnd:34,readEnd:73] [451,nodeEnd:26,readEnd:76] , trimmed to: [380, 982, 440, 451] Threaded Read as: 61DFRAAXX100204:1:67:9991:2232 : [380, 982, 440, 451] ReadPath@Init: 61DFRAAXX100204:1:67:9991:2232 : [380, 982, 440, 451] mapped read [8]Read: >61DFRAAXX100204:1:70:1041:1268/1 18 680 25 687 GTGACAAAGAAAAGAGGTTGACAGACTCTCTAAGGGACATATGGGAGCTAGATAGAAAGCCCCGAGGAGGTAGCCG - Read: 61DFRAAXX100204:1:70:1041:1268 has start: 18, end: 49 and sequence: GTGACAAAGAAAAGAGGTTGACAGACTCTCTAAGGGACATATGGGAGCTAGATAGAAAGCCCCGAGGAGGTAGCCG after extracting substring: TGACAGACTCTCTAAGGGACATATGGGAGCTA findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 131 Threading read: 61DFRAAXX100204:1:70:1041:1268, length: 32, allowing for 2 max mismatches. Read: 61DFRAAXX100204:1:70:1041:1268 sequence is: TGACAGACTCTCTAAGGGACATATGGGAGCTA updatePathRecursively(readName=61DFRAAXX100204:1:70:1041:1268, locInSeq: 0 / 31, locInNode: 131 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (61DFRAAXX100204:1:70:1041:1268) TGACAGACTCTCTAAGGGACATATGGGAGCTA 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: TGACAGACTCTCTAAGGGACATATGGGAGCTA 131 zipper alignment mm: 0 alignment divergence up to seq pos 32 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 163 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:1:70:1041:1268 with length: 32 and base [32] ends at position [163] within node: 549 totaling 0 mismatches. FINAL BEST PATH for 61DFRAAXX100204:1:70:1041:1268 is [549] with total mm: 0 Read 61DFRAAXX100204:1:70:1041:1268 seq TGACAGACTCTCTAAGGGACATATGGGAGCTA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:163,readEnd:32] , trimmed to: [549] Threaded Read as: 61DFRAAXX100204:1:70:1041:1268 : [549] ReadPath@Init: 61DFRAAXX100204:1:70:1041:1268 : [549] mapped read [9]Read: >61DFRAAXX100204:1:85:13720:15251/1 0 639 51 690 TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT - Read: 61DFRAAXX100204:1:85:13720:15251 has start: 0, end: 75 and sequence: TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT after extracting substring: TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 90 Threading read: 61DFRAAXX100204:1:85:13720:15251, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:1:85:13720:15251 sequence is: TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT updatePathRecursively(readName=61DFRAAXX100204:1:85:13720:15251, locInSeq: 0 / 75, locInNode: 90 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (61DFRAAXX100204:1:85:13720:15251) TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT 90 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 166 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:1:85:13720:15251 with length: 76 and base [76] ends at position [166] within node: 549 totaling 0 mismatches. FINAL BEST PATH for 61DFRAAXX100204:1:85:13720:15251 is [549] with total mm: 0 Read 61DFRAAXX100204:1:85:13720:15251 seq TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:166,readEnd:76] , trimmed to: [549] Threaded Read as: 61DFRAAXX100204:1:85:13720:15251 : [549] ReadPath@Init: 61DFRAAXX100204:1:85:13720:15251 : [549] mapped read [10]Read: >61DFRAAXX100204:2:13:7749:17373/2 0 413 51 464 ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG - Read: 61DFRAAXX100204:2:13:7749:17373 has start: 0, end: 75 and sequence: ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG after extracting substring: ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG findPathInGraph: V:380, with seq: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG trying to start the mapping to node 380 at position: 33 Threading read: 61DFRAAXX100204:2:13:7749:17373, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:2:13:7749:17373 sequence is: ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG updatePathRecursively(readName=61DFRAAXX100204:2:13:7749:17373, locInSeq: 0 / 75, locInNode: 33 / 58, totalNumMm: 0 trying to continue the mapping to node GGCCACACGA...CTTCCTCAAG:W2(V380_D0) -ALIGNING READ SEQ (61DFRAAXX100204:2:13:7749:17373) ACTGGCTACAAACAGACTTCCTCAAG 0 To VERTEX (GGCCACACGA...CTTCCTCAAG:W2(V380_D0)) SEQ: ACTGGCTACAAACAGACTTCCTCAAG 33 zipper alignment mm: 0 alignment divergence up to seq pos 26 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 59 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:13:7749:17373 base [26] ends at position [59] within node: 380 totaling 0 mismatches. -reached end of vertex: 380, exploring next vertices for continued path extension: [982] Pursuing extension from : GGCCACACGA...CTTCCTCAAG:W2(V380_D0) to successors: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)] Exploring extension from node: 380 to node: 982 updatePathRecursively(readName=61DFRAAXX100204:2:13:7749:17373, locInSeq: 26 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) -ALIGNING READ SEQ (61DFRAAXX100204:2:13:7749:17373) CCTCATCAGCAAGAAGAAATCTTT 26 To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: CCTCATCAGCAAGAAGAAATCTTT 23 zipper alignment mm: 0 alignment divergence up to seq pos 50 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 47 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:13:7749:17373 base [50] ends at position [47] within node: 982 totaling 0 mismatches. -reached end of vertex: 982, exploring next vertices for continued path extension: [440] Pursuing extension from : CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) to successors: [CTTTCCAAGTA:W8(V440_D2)] Exploring extension from node: 982 to node: 440 updatePathRecursively(readName=61DFRAAXX100204:2:13:7749:17373, locInSeq: 50 / 75, locInNode: 23 / 33, totalNumMm: 0 trying to continue the mapping to node CTTTCCAAGTA:W8(V440_D2) -ALIGNING READ SEQ (61DFRAAXX100204:2:13:7749:17373) CTTTCCAAGTA 50 To VERTEX (CTTTCCAAGTA:W8(V440_D2)) SEQ: CTTTCCAAGTA 23 zipper alignment mm: 0 alignment divergence up to seq pos 61 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 34 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:13:7749:17373 base [61] ends at position [34] within node: 440 totaling 0 mismatches. -reached end of vertex: 440, exploring next vertices for continued path extension: [451] Pursuing extension from : CTTTCCAAGTA:W8(V440_D2) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] Exploring extension from node: 440 to node: 451 updatePathRecursively(readName=61DFRAAXX100204:2:13:7749:17373, locInSeq: 61 / 75, locInNode: 23 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (61DFRAAXX100204:2:13:7749:17373) GTGTCTTAACTCAGG 61 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: GTGTCTTAACTCAGG 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 38 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:2:13:7749:17373 with length: 76 and base [76] ends at position [38] within node: 451 totaling 0 mismatches. 61DFRAAXX100204:2:13:7749:17373 best path so far from vertex: 440 to : 451 = [451], with total mm: 0 Done with exploring paths from vertex: 440 Paths and scores found are: explored path: [451] w/ mm: 0 AND best selected was: [451] w/ mm: 0 61DFRAAXX100204:2:13:7749:17373 best path so far from vertex: 982 to : 440 = [440, 451], with total mm: 0 Done with exploring paths from vertex: 982 Paths and scores found are: explored path: [440, 451] w/ mm: 0 AND best selected was: [440, 451] w/ mm: 0 61DFRAAXX100204:2:13:7749:17373 best path so far from vertex: 380 to : 982 = [982, 440, 451], with total mm: 0 Done with exploring paths from vertex: 380 Paths and scores found are: explored path: [982, 440, 451] w/ mm: 0 AND best selected was: [982, 440, 451] w/ mm: 0 FINAL BEST PATH for 61DFRAAXX100204:2:13:7749:17373 is [380, 982, 440, 451] with total mm: 0 Read 61DFRAAXX100204:2:13:7749:17373 seq ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [380, 982, 440, 451] positions: [380,nodeEnd:59,readEnd:26] [982,nodeEnd:47,readEnd:50] [440,nodeEnd:34,readEnd:61] [451,nodeEnd:38,readEnd:76] , trimmed to: [380, 982, 440, 451] Threaded Read as: 61DFRAAXX100204:2:13:7749:17373 : [380, 982, 440, 451] ReadPath@Init: 61DFRAAXX100204:2:13:7749:17373 : [380, 982, 440, 451] mapped read [11]Read: >61DFRAAXX100204:2:18:10392:2962/1 0 411 51 462 CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA - Read: 61DFRAAXX100204:2:18:10392:2962 has start: 0, end: 75 and sequence: CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA after extracting substring: CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA findPathInGraph: V:380, with seq: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG trying to start the mapping to node 380 at position: 31 Threading read: 61DFRAAXX100204:2:18:10392:2962, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:2:18:10392:2962 sequence is: CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA updatePathRecursively(readName=61DFRAAXX100204:2:18:10392:2962, locInSeq: 0 / 75, locInNode: 31 / 58, totalNumMm: 0 trying to continue the mapping to node GGCCACACGA...CTTCCTCAAG:W2(V380_D0) -ALIGNING READ SEQ (61DFRAAXX100204:2:18:10392:2962) CTACTGGCTACAAACAGACTTCCTCAAG 0 To VERTEX (GGCCACACGA...CTTCCTCAAG:W2(V380_D0)) SEQ: CTACTGGCTACAAACAGACTTCCTCAAG 31 zipper alignment mm: 0 alignment divergence up to seq pos 28 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 59 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:18:10392:2962 base [28] ends at position [59] within node: 380 totaling 0 mismatches. -reached end of vertex: 380, exploring next vertices for continued path extension: [982] Pursuing extension from : GGCCACACGA...CTTCCTCAAG:W2(V380_D0) to successors: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)] Exploring extension from node: 380 to node: 982 updatePathRecursively(readName=61DFRAAXX100204:2:18:10392:2962, locInSeq: 28 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) -ALIGNING READ SEQ (61DFRAAXX100204:2:18:10392:2962) GCTCATCAGCAAGAAGAAATCTTT 28 To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: CCTCATCAGCAAGAAGAAATCTTT 23 zipper alignment mm: 1 alignment divergence up to seq pos 52 = mm: 1, div:0.01923077 local vertex alignment divergence = 1 / 47 = 0.021276595 Reached end of node sequence. Read61DFRAAXX100204:2:18:10392:2962 base [52] ends at position [47] within node: 982 totaling 1 mismatches. -reached end of vertex: 982, exploring next vertices for continued path extension: [440] Pursuing extension from : CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) to successors: [CTTTCCAAGTA:W8(V440_D2)] Exploring extension from node: 982 to node: 440 updatePathRecursively(readName=61DFRAAXX100204:2:18:10392:2962, locInSeq: 52 / 75, locInNode: 23 / 33, totalNumMm: 1 trying to continue the mapping to node CTTTCCAAGTA:W8(V440_D2) -ALIGNING READ SEQ (61DFRAAXX100204:2:18:10392:2962) CTTTCCAAGTA 52 To VERTEX (CTTTCCAAGTA:W8(V440_D2)) SEQ: CTTTCCAAGTA 23 zipper alignment mm: 0 alignment divergence up to seq pos 63 = mm: 1, div:0.015873017 local vertex alignment divergence = 0 / 34 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:18:10392:2962 base [63] ends at position [34] within node: 440 totaling 0 mismatches. -reached end of vertex: 440, exploring next vertices for continued path extension: [451] Pursuing extension from : CTTTCCAAGTA:W8(V440_D2) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] Exploring extension from node: 440 to node: 451 updatePathRecursively(readName=61DFRAAXX100204:2:18:10392:2962, locInSeq: 63 / 75, locInNode: 23 / 96, totalNumMm: 1 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (61DFRAAXX100204:2:18:10392:2962) GTGTCTTAACTCA 63 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: GTGTCTTAACTCA 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 1, div:0.013157895 local vertex alignment divergence = 0 / 36 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:2:18:10392:2962 with length: 76 and base [76] ends at position [36] within node: 451 totaling 0 mismatches. 61DFRAAXX100204:2:18:10392:2962 best path so far from vertex: 440 to : 451 = [451], with total mm: 0 Done with exploring paths from vertex: 440 Paths and scores found are: explored path: [451] w/ mm: 0 AND best selected was: [451] w/ mm: 0 61DFRAAXX100204:2:18:10392:2962 best path so far from vertex: 982 to : 440 = [440, 451], with total mm: 0 Done with exploring paths from vertex: 982 Paths and scores found are: explored path: [440, 451] w/ mm: 0 AND best selected was: [440, 451] w/ mm: 0 61DFRAAXX100204:2:18:10392:2962 best path so far from vertex: 380 to : 982 = [982, 440, 451], with total mm: 1 Done with exploring paths from vertex: 380 Paths and scores found are: explored path: [982, 440, 451] w/ mm: 1 AND best selected was: [982, 440, 451] w/ mm: 1 FINAL BEST PATH for 61DFRAAXX100204:2:18:10392:2962 is [380, 982, 440, 451] with total mm: 1 Read 61DFRAAXX100204:2:18:10392:2962 seq CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA threaded as: PATH_N_MM_COUNT: mismatches=1, path= [380, 982, 440, 451] positions: [380,nodeEnd:59,readEnd:28] [982,nodeEnd:47,readEnd:52] [440,nodeEnd:34,readEnd:63] [451,nodeEnd:36,readEnd:76] , trimmed to: [380, 982, 440, 451] Threaded Read as: 61DFRAAXX100204:2:18:10392:2962 : [380, 982, 440, 451] ReadPath@Init: 61DFRAAXX100204:2:18:10392:2962 : [380, 982, 440, 451] mapped read [12]Read: >61DFRAAXX100204:2:27:5714:7307/1 0 657 51 708 GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG - Read: 61DFRAAXX100204:2:27:5714:7307 has start: 0, end: 75 and sequence: GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG after extracting substring: GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 108 Threading read: 61DFRAAXX100204:2:27:5714:7307, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:2:27:5714:7307 sequence is: GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG updatePathRecursively(readName=61DFRAAXX100204:2:27:5714:7307, locInSeq: 0 / 75, locInNode: 108 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (61DFRAAXX100204:2:27:5714:7307) GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG 108 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 184 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:2:27:5714:7307 with length: 76 and base [76] ends at position [184] within node: 549 totaling 0 mismatches. FINAL BEST PATH for 61DFRAAXX100204:2:27:5714:7307 is [549] with total mm: 0 Read 61DFRAAXX100204:2:27:5714:7307 seq GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:184,readEnd:76] , trimmed to: [549] Threaded Read as: 61DFRAAXX100204:2:27:5714:7307 : [549] ReadPath@Init: 61DFRAAXX100204:2:27:5714:7307 : [549] mapped read [13]Read: >61DFRAAXX100204:2:33:12784:13782/1 0 606 51 657 TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG - Read: 61DFRAAXX100204:2:33:12784:13782 has start: 0, end: 75 and sequence: TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG after extracting substring: TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 57 Threading read: 61DFRAAXX100204:2:33:12784:13782, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:2:33:12784:13782 sequence is: TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG updatePathRecursively(readName=61DFRAAXX100204:2:33:12784:13782, locInSeq: 0 / 75, locInNode: 57 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (61DFRAAXX100204:2:33:12784:13782) TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG 57 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 133 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:2:33:12784:13782 with length: 76 and base [76] ends at position [133] within node: 549 totaling 0 mismatches. FINAL BEST PATH for 61DFRAAXX100204:2:33:12784:13782 is [549] with total mm: 0 Read 61DFRAAXX100204:2:33:12784:13782 seq TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:133,readEnd:76] , trimmed to: [549] Threaded Read as: 61DFRAAXX100204:2:33:12784:13782 : [549] ReadPath@Init: 61DFRAAXX100204:2:33:12784:13782 : [549] mapped read [14]Read: >61DFRAAXX100204:2:34:11574:10433/2 0 422 51 473 AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG - Read: 61DFRAAXX100204:2:34:11574:10433 has start: 0, end: 75 and sequence: AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG after extracting substring: AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG findPathInGraph: V:982, with seq: GGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTT trying to start the mapping to node 982 at position: 5 Threading read: 61DFRAAXX100204:2:34:11574:10433, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:2:34:11574:10433 sequence is: AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG updatePathRecursively(readName=61DFRAAXX100204:2:34:11574:10433, locInSeq: 0 / 75, locInNode: 5 / 46, totalNumMm: 0 trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) -ALIGNING READ SEQ (61DFRAAXX100204:2:34:11574:10433) AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTC 0 To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: CAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTT 5 shortcircuiting the zipper test, too many MM or execeeding local seq divergence *Trying again using full DP alignment: -running Needleman-Wunsch alignment of vertex to read Read 1 -AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAA 49 ||||||||||||||||||||||||||||||||||||||||| Vertex 1 CAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTT-------- 42 vertex end gaps: 8 read end gaps: 0 mismatches encountered: 1 alignment divergence up to seq pos 41 = mm: 1, div:0.024390243 local vertex alignment divergence = 1 / 47 = 0.021276595 Reached end of node sequence. Read61DFRAAXX100204:2:34:11574:10433 base [41] ends at position [47] within node: 982 totaling 1 mismatches. -reached end of vertex: 982, exploring next vertices for continued path extension: [440] Pursuing extension from : CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) to successors: [CTTTCCAAGTA:W8(V440_D2)] Exploring extension from node: 982 to node: 440 updatePathRecursively(readName=61DFRAAXX100204:2:34:11574:10433, locInSeq: 41 / 75, locInNode: 23 / 33, totalNumMm: 1 trying to continue the mapping to node CTTTCCAAGTA:W8(V440_D2) -ALIGNING READ SEQ (61DFRAAXX100204:2:34:11574:10433) CTTTCCAAGTA 41 To VERTEX (CTTTCCAAGTA:W8(V440_D2)) SEQ: CTTTCCAAGTA 23 zipper alignment mm: 0 alignment divergence up to seq pos 52 = mm: 1, div:0.01923077 local vertex alignment divergence = 0 / 34 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:34:11574:10433 base [52] ends at position [34] within node: 440 totaling 0 mismatches. -reached end of vertex: 440, exploring next vertices for continued path extension: [451] Pursuing extension from : CTTTCCAAGTA:W8(V440_D2) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] Exploring extension from node: 440 to node: 451 updatePathRecursively(readName=61DFRAAXX100204:2:34:11574:10433, locInSeq: 52 / 75, locInNode: 23 / 96, totalNumMm: 1 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (61DFRAAXX100204:2:34:11574:10433) GTGTCTTAACTCAGGAGATCATGG 52 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: GTGTCTTAACTCAGGAGATCATGG 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 1, div:0.013157895 local vertex alignment divergence = 0 / 47 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:2:34:11574:10433 with length: 76 and base [76] ends at position [47] within node: 451 totaling 0 mismatches. 61DFRAAXX100204:2:34:11574:10433 best path so far from vertex: 440 to : 451 = [451], with total mm: 0 Done with exploring paths from vertex: 440 Paths and scores found are: explored path: [451] w/ mm: 0 AND best selected was: [451] w/ mm: 0 61DFRAAXX100204:2:34:11574:10433 best path so far from vertex: 982 to : 440 = [440, 451], with total mm: 0 Done with exploring paths from vertex: 982 Paths and scores found are: explored path: [440, 451] w/ mm: 0 AND best selected was: [440, 451] w/ mm: 0 FINAL BEST PATH for 61DFRAAXX100204:2:34:11574:10433 is [982, 440, 451] with total mm: 1 Read 61DFRAAXX100204:2:34:11574:10433 seq AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG threaded as: PATH_N_MM_COUNT: mismatches=1, path= [982, 440, 451] positions: [982,nodeEnd:47,readEnd:41] [440,nodeEnd:34,readEnd:52] [451,nodeEnd:47,readEnd:76] , trimmed to: [982, 440, 451] Threaded Read as: 61DFRAAXX100204:2:34:11574:10433 : [982, 440, 451] ReadPath@Init: 61DFRAAXX100204:2:34:11574:10433 : [982, 440, 451] mapped read [15]Read: >61DFRAAXX100204:2:43:2649:2845/2 0 945 51 466 AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG - Read: 61DFRAAXX100204:2:43:2649:2845 has start: 0, end: 75 and sequence: AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG after extracting substring: AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG findPathInGraph: V:945, with seq: AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTA trying to start the mapping to node 945 at position: 0 Threading read: 61DFRAAXX100204:2:43:2649:2845, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:2:43:2649:2845 sequence is: AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG updatePathRecursively(readName=61DFRAAXX100204:2:43:2649:2845, locInSeq: 0 / 75, locInNode: 0 / 58, totalNumMm: 0 trying to continue the mapping to node AGAATACAAA...TTTCCAAGTA:W1(V945_D0) -ALIGNING READ SEQ (61DFRAAXX100204:2:43:2649:2845) AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTA 0 To VERTEX (AGAATACAAA...TTTCCAAGTA:W1(V945_D0)) SEQ: AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTA 0 zipper alignment mm: 0 alignment divergence up to seq pos 59 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 59 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:43:2649:2845 base [59] ends at position [59] within node: 945 totaling 0 mismatches. -reached end of vertex: 945, exploring next vertices for continued path extension: [451] Pursuing extension from : AGAATACAAA...TTTCCAAGTA:W1(V945_D0) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] Exploring extension from node: 945 to node: 451 updatePathRecursively(readName=61DFRAAXX100204:2:43:2649:2845, locInSeq: 59 / 75, locInNode: 23 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (61DFRAAXX100204:2:43:2649:2845) GTGTCTTAACTCAGGAG 59 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: GTGTCTTAACTCAGGAG 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 40 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:2:43:2649:2845 with length: 76 and base [76] ends at position [40] within node: 451 totaling 0 mismatches. 61DFRAAXX100204:2:43:2649:2845 best path so far from vertex: 945 to : 451 = [451], with total mm: 0 Done with exploring paths from vertex: 945 Paths and scores found are: explored path: [451] w/ mm: 0 AND best selected was: [451] w/ mm: 0 FINAL BEST PATH for 61DFRAAXX100204:2:43:2649:2845 is [945, 451] with total mm: 0 Read 61DFRAAXX100204:2:43:2649:2845 seq AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [945, 451] positions: [945,nodeEnd:59,readEnd:59] [451,nodeEnd:40,readEnd:76] , trimmed to: [945, 451] Threaded Read as: 61DFRAAXX100204:2:43:2649:2845 : [945, 451] ReadPath@Init: 61DFRAAXX100204:2:43:2649:2845 : [945, 451] mapped read [16]Read: >61DFRAAXX100204:2:47:12270:6103/1 0 631 51 682 CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG - Read: 61DFRAAXX100204:2:47:12270:6103 has start: 0, end: 75 and sequence: CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG after extracting substring: CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 82 Threading read: 61DFRAAXX100204:2:47:12270:6103, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:2:47:12270:6103 sequence is: CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG updatePathRecursively(readName=61DFRAAXX100204:2:47:12270:6103, locInSeq: 0 / 75, locInNode: 82 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (61DFRAAXX100204:2:47:12270:6103) CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG 82 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 158 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:2:47:12270:6103 with length: 76 and base [76] ends at position [158] within node: 549 totaling 0 mismatches. FINAL BEST PATH for 61DFRAAXX100204:2:47:12270:6103 is [549] with total mm: 0 Read 61DFRAAXX100204:2:47:12270:6103 seq CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:158,readEnd:76] , trimmed to: [549] Threaded Read as: 61DFRAAXX100204:2:47:12270:6103 : [549] ReadPath@Init: 61DFRAAXX100204:2:47:12270:6103 : [549] mapped read [17]Read: >61DFRAAXX100204:2:47:8841:7694/2 0 504 51 555 AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC - Read: 61DFRAAXX100204:2:47:8841:7694 has start: 0, end: 75 and sequence: AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC after extracting substring: AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT trying to start the mapping to node 451 at position: 53 Threading read: 61DFRAAXX100204:2:47:8841:7694, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:2:47:8841:7694 sequence is: AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC updatePathRecursively(readName=61DFRAAXX100204:2:47:8841:7694, locInSeq: 0 / 75, locInNode: 53 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (61DFRAAXX100204:2:47:8841:7694) AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 53 zipper alignment mm: 0 alignment divergence up to seq pos 44 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 97 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:47:8841:7694 base [44] ends at position [97] within node: 451 totaling 0 mismatches. -reached end of vertex: 451, exploring next vertices for continued path extension: [981] Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] Exploring extension from node: 451 to node: 981 updatePathRecursively(readName=61DFRAAXX100204:2:47:8841:7694, locInSeq: 44 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) -ALIGNING READ SEQ (61DFRAAXX100204:2:47:8841:7694) GAGCACTCTGAACCCTGTGAGGCA 44 To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: GAGCACTCTGAACCCTGTGAGGCA 23 zipper alignment mm: 0 alignment divergence up to seq pos 68 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 47 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:47:8841:7694 base [68] ends at position [47] within node: 981 totaling 0 mismatches. -reached end of vertex: 981, exploring next vertices for continued path extension: [549] Pursuing extension from : GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) to successors: [AGTCCACCAC...GGGAGCCACC:W6(V549_D3)] Exploring extension from node: 981 to node: 549 updatePathRecursively(readName=61DFRAAXX100204:2:47:8841:7694, locInSeq: 68 / 75, locInNode: 23 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (61DFRAAXX100204:2:47:8841:7694) AGTCCACC 68 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: AGTCCACC 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 31 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:2:47:8841:7694 with length: 76 and base [76] ends at position [31] within node: 549 totaling 0 mismatches. 61DFRAAXX100204:2:47:8841:7694 best path so far from vertex: 981 to : 549 = [549], with total mm: 0 Done with exploring paths from vertex: 981 Paths and scores found are: explored path: [549] w/ mm: 0 AND best selected was: [549] w/ mm: 0 61DFRAAXX100204:2:47:8841:7694 best path so far from vertex: 451 to : 981 = [981, 549], with total mm: 0 Done with exploring paths from vertex: 451 Paths and scores found are: explored path: [981, 549] w/ mm: 0 AND best selected was: [981, 549] w/ mm: 0 FINAL BEST PATH for 61DFRAAXX100204:2:47:8841:7694 is [451, 981, 549] with total mm: 0 Read 61DFRAAXX100204:2:47:8841:7694 seq AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [451, 981, 549] positions: [451,nodeEnd:97,readEnd:44] [981,nodeEnd:47,readEnd:68] [549,nodeEnd:31,readEnd:76] , trimmed to: [451, 981, 549] Threaded Read as: 61DFRAAXX100204:2:47:8841:7694 : [451, 981, 549] ReadPath@Init: 61DFRAAXX100204:2:47:8841:7694 : [451, 981, 549] mapped read [18]Read: >61DFRAAXX100204:2:59:18912:18239/1 0 485 51 536 CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC - Read: 61DFRAAXX100204:2:59:18912:18239 has start: 0, end: 75 and sequence: CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC after extracting substring: CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT trying to start the mapping to node 451 at position: 34 Threading read: 61DFRAAXX100204:2:59:18912:18239, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:2:59:18912:18239 sequence is: CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC updatePathRecursively(readName=61DFRAAXX100204:2:59:18912:18239, locInSeq: 0 / 75, locInNode: 34 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (61DFRAAXX100204:2:59:18912:18239) CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 34 zipper alignment mm: 0 alignment divergence up to seq pos 63 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 97 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:59:18912:18239 base [63] ends at position [97] within node: 451 totaling 0 mismatches. -reached end of vertex: 451, exploring next vertices for continued path extension: [981] Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] Exploring extension from node: 451 to node: 981 updatePathRecursively(readName=61DFRAAXX100204:2:59:18912:18239, locInSeq: 63 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) -ALIGNING READ SEQ (61DFRAAXX100204:2:59:18912:18239) GAGCACTCTGAAC 63 To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: GAGCACTCTGAAC 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 36 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:2:59:18912:18239 with length: 76 and base [76] ends at position [36] within node: 981 totaling 0 mismatches. 61DFRAAXX100204:2:59:18912:18239 best path so far from vertex: 451 to : 981 = [981], with total mm: 0 Done with exploring paths from vertex: 451 Paths and scores found are: explored path: [981] w/ mm: 0 AND best selected was: [981] w/ mm: 0 FINAL BEST PATH for 61DFRAAXX100204:2:59:18912:18239 is [451, 981] with total mm: 0 Read 61DFRAAXX100204:2:59:18912:18239 seq CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [451, 981] positions: [451,nodeEnd:97,readEnd:63] [981,nodeEnd:36,readEnd:76] , trimmed to: [451, 981] Threaded Read as: 61DFRAAXX100204:2:59:18912:18239 : [451, 981] ReadPath@Init: 61DFRAAXX100204:2:59:18912:18239 : [451, 981] mapped read [19]Read: >61DFRAAXX100204:2:59:18912:18239/2 0 612 51 663 AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC - Read: 61DFRAAXX100204:2:59:18912:18239 has start: 0, end: 75 and sequence: AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC after extracting substring: AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 63 Threading read: 61DFRAAXX100204:2:59:18912:18239, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:2:59:18912:18239 sequence is: AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC updatePathRecursively(readName=61DFRAAXX100204:2:59:18912:18239, locInSeq: 0 / 75, locInNode: 63 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (61DFRAAXX100204:2:59:18912:18239) AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC 63 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 139 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:2:59:18912:18239 with length: 76 and base [76] ends at position [139] within node: 549 totaling 0 mismatches. FINAL BEST PATH for 61DFRAAXX100204:2:59:18912:18239 is [549] with total mm: 0 Read 61DFRAAXX100204:2:59:18912:18239 seq AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:139,readEnd:76] , trimmed to: [549] Threaded Read as: 61DFRAAXX100204:2:59:18912:18239 : [549] ReadPath@Init: 61DFRAAXX100204:2:59:18912:18239 : [549] mapped read [20]Read: >61DFRAAXX100204:2:61:13619:6070/2 0 786 51 741 GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC - Read: 61DFRAAXX100204:2:61:13619:6070 has start: 0, end: 75 and sequence: GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC after extracting substring: GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC findPathInGraph: V:786, with seq: GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 786 at position: 0 Threading read: 61DFRAAXX100204:2:61:13619:6070, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:2:61:13619:6070 sequence is: GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC updatePathRecursively(readName=61DFRAAXX100204:2:61:13619:6070, locInSeq: 0 / 75, locInNode: 0 / 49, totalNumMm: 0 trying to continue the mapping to node GCTAGGGGAA...GGGAGCCACC:W1(V786_D0) -ALIGNING READ SEQ (61DFRAAXX100204:2:61:13619:6070) GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACC 0 To VERTEX (GCTAGGGGAA...GGGAGCCACC:W1(V786_D0)) SEQ: GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACC 0 zipper alignment mm: 0 alignment divergence up to seq pos 50 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 50 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:61:13619:6070 base [50] ends at position [50] within node: 786 totaling 0 mismatches. -reached end of vertex: 786, exploring next vertices for continued path extension: [717] Pursuing extension from : GCTAGGGGAA...GGGAGCCACC:W1(V786_D0) to successors: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)] Exploring extension from node: 786 to node: 717 updatePathRecursively(readName=61DFRAAXX100204:2:61:13619:6070, locInSeq: 50 / 75, locInNode: 23 / 64, totalNumMm: 0 trying to continue the mapping to node AGCCACAGGT...CTTCCTGTGA:W5(V717_D1) -ALIGNING READ SEQ (61DFRAAXX100204:2:61:13619:6070) AGCCACAGGTACCTGATGGAAATGCC 50 To VERTEX (AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)) SEQ: AGCCACAGGTACCTGATGGAAATGCC 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 49 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:2:61:13619:6070 with length: 76 and base [76] ends at position [49] within node: 717 totaling 0 mismatches. 61DFRAAXX100204:2:61:13619:6070 best path so far from vertex: 786 to : 717 = [717], with total mm: 0 Done with exploring paths from vertex: 786 Paths and scores found are: explored path: [717] w/ mm: 0 AND best selected was: [717] w/ mm: 0 FINAL BEST PATH for 61DFRAAXX100204:2:61:13619:6070 is [786, 717] with total mm: 0 Read 61DFRAAXX100204:2:61:13619:6070 seq GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [786, 717] positions: [786,nodeEnd:50,readEnd:50] [717,nodeEnd:49,readEnd:76] , trimmed to: [786, 717] Threaded Read as: 61DFRAAXX100204:2:61:13619:6070 : [786, 717] ReadPath@Init: 61DFRAAXX100204:2:61:13619:6070 : [786, 717] mapped read [21]Read: >61DFRAAXX100204:2:64:15138:21125/1 0 706 51 757 GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA - Read: 61DFRAAXX100204:2:64:15138:21125 has start: 0, end: 75 and sequence: GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA after extracting substring: GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 157 Threading read: 61DFRAAXX100204:2:64:15138:21125, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:2:64:15138:21125 sequence is: GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA updatePathRecursively(readName=61DFRAAXX100204:2:64:15138:21125, locInSeq: 0 / 75, locInNode: 157 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (61DFRAAXX100204:2:64:15138:21125) GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC 157 zipper alignment mm: 0 alignment divergence up to seq pos 34 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 191 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:64:15138:21125 base [34] ends at position [191] within node: 549 totaling 0 mismatches. -reached end of vertex: 549, exploring next vertices for continued path extension: [717] Pursuing extension from : AGTCCACCAC...GGGAGCCACC:W6(V549_D3) to successors: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)] Exploring extension from node: 549 to node: 717 updatePathRecursively(readName=61DFRAAXX100204:2:64:15138:21125, locInSeq: 34 / 75, locInNode: 23 / 64, totalNumMm: 0 trying to continue the mapping to node AGCCACAGGT...CTTCCTGTGA:W5(V717_D1) -ALIGNING READ SEQ (61DFRAAXX100204:2:64:15138:21125) AGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA 34 To VERTEX (AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)) SEQ: AGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 65 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:2:64:15138:21125 with length: 76 and base [76] ends at position [65] within node: 717 totaling 0 mismatches. 61DFRAAXX100204:2:64:15138:21125 best path so far from vertex: 549 to : 717 = [717], with total mm: 0 Done with exploring paths from vertex: 549 Paths and scores found are: explored path: [717] w/ mm: 0 AND best selected was: [717] w/ mm: 0 FINAL BEST PATH for 61DFRAAXX100204:2:64:15138:21125 is [549, 717] with total mm: 0 Read 61DFRAAXX100204:2:64:15138:21125 seq GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549, 717] positions: [549,nodeEnd:191,readEnd:34] [717,nodeEnd:65,readEnd:76] , trimmed to: [549, 717] Threaded Read as: 61DFRAAXX100204:2:64:15138:21125 : [549, 717] ReadPath@Init: 61DFRAAXX100204:2:64:15138:21125 : [549, 717] mapped read [22]Read: >61DFRAAXX100204:2:75:16853:12097/1 0 507 51 558 GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC - Read: 61DFRAAXX100204:2:75:16853:12097 has start: 0, end: 75 and sequence: GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC after extracting substring: GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT trying to start the mapping to node 451 at position: 56 Threading read: 61DFRAAXX100204:2:75:16853:12097, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:2:75:16853:12097 sequence is: GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC updatePathRecursively(readName=61DFRAAXX100204:2:75:16853:12097, locInSeq: 0 / 75, locInNode: 56 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (61DFRAAXX100204:2:75:16853:12097) GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 56 zipper alignment mm: 0 alignment divergence up to seq pos 41 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 97 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:75:16853:12097 base [41] ends at position [97] within node: 451 totaling 0 mismatches. -reached end of vertex: 451, exploring next vertices for continued path extension: [981] Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] Exploring extension from node: 451 to node: 981 updatePathRecursively(readName=61DFRAAXX100204:2:75:16853:12097, locInSeq: 41 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) -ALIGNING READ SEQ (61DFRAAXX100204:2:75:16853:12097) GAGCACTCTGAACCCTGTGAGGCA 41 To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: GAGCACTCTGAACCCTGTGAGGCA 23 zipper alignment mm: 0 alignment divergence up to seq pos 65 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 47 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:75:16853:12097 base [65] ends at position [47] within node: 981 totaling 0 mismatches. -reached end of vertex: 981, exploring next vertices for continued path extension: [549] Pursuing extension from : GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) to successors: [AGTCCACCAC...GGGAGCCACC:W6(V549_D3)] Exploring extension from node: 981 to node: 549 updatePathRecursively(readName=61DFRAAXX100204:2:75:16853:12097, locInSeq: 65 / 75, locInNode: 23 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (61DFRAAXX100204:2:75:16853:12097) AGTCCACCACC 65 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: AGTCCACCACC 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 34 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:2:75:16853:12097 with length: 76 and base [76] ends at position [34] within node: 549 totaling 0 mismatches. 61DFRAAXX100204:2:75:16853:12097 best path so far from vertex: 981 to : 549 = [549], with total mm: 0 Done with exploring paths from vertex: 981 Paths and scores found are: explored path: [549] w/ mm: 0 AND best selected was: [549] w/ mm: 0 61DFRAAXX100204:2:75:16853:12097 best path so far from vertex: 451 to : 981 = [981, 549], with total mm: 0 Done with exploring paths from vertex: 451 Paths and scores found are: explored path: [981, 549] w/ mm: 0 AND best selected was: [981, 549] w/ mm: 0 FINAL BEST PATH for 61DFRAAXX100204:2:75:16853:12097 is [451, 981, 549] with total mm: 0 Read 61DFRAAXX100204:2:75:16853:12097 seq GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [451, 981, 549] positions: [451,nodeEnd:97,readEnd:41] [981,nodeEnd:47,readEnd:65] [549,nodeEnd:34,readEnd:76] , trimmed to: [451, 981, 549] Threaded Read as: 61DFRAAXX100204:2:75:16853:12097 : [451, 981, 549] ReadPath@Init: 61DFRAAXX100204:2:75:16853:12097 : [451, 981, 549] mapped read [23]Read: >61DFRAAXX100204:2:90:12533:11254/1 0 696 51 747 GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA - Read: 61DFRAAXX100204:2:90:12533:11254 has start: 0, end: 75 and sequence: GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA after extracting substring: GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 147 Threading read: 61DFRAAXX100204:2:90:12533:11254, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:2:90:12533:11254 sequence is: GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA updatePathRecursively(readName=61DFRAAXX100204:2:90:12533:11254, locInSeq: 0 / 75, locInNode: 147 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (61DFRAAXX100204:2:90:12533:11254) GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC 147 zipper alignment mm: 0 alignment divergence up to seq pos 44 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 191 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:90:12533:11254 base [44] ends at position [191] within node: 549 totaling 0 mismatches. -reached end of vertex: 549, exploring next vertices for continued path extension: [717] Pursuing extension from : AGTCCACCAC...GGGAGCCACC:W6(V549_D3) to successors: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)] Exploring extension from node: 549 to node: 717 updatePathRecursively(readName=61DFRAAXX100204:2:90:12533:11254, locInSeq: 44 / 75, locInNode: 23 / 64, totalNumMm: 0 trying to continue the mapping to node AGCCACAGGT...CTTCCTGTGA:W5(V717_D1) -ALIGNING READ SEQ (61DFRAAXX100204:2:90:12533:11254) AGCCACAGGTACCTGATGGAAATGCCGGCTCA 44 To VERTEX (AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)) SEQ: AGCCACAGGTACCTGATGGAAATGCCGGCTCA 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 55 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:2:90:12533:11254 with length: 76 and base [76] ends at position [55] within node: 717 totaling 0 mismatches. 61DFRAAXX100204:2:90:12533:11254 best path so far from vertex: 549 to : 717 = [717], with total mm: 0 Done with exploring paths from vertex: 549 Paths and scores found are: explored path: [717] w/ mm: 0 AND best selected was: [717] w/ mm: 0 FINAL BEST PATH for 61DFRAAXX100204:2:90:12533:11254 is [549, 717] with total mm: 0 Read 61DFRAAXX100204:2:90:12533:11254 seq GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549, 717] positions: [549,nodeEnd:191,readEnd:44] [717,nodeEnd:55,readEnd:76] , trimmed to: [549, 717] Threaded Read as: 61DFRAAXX100204:2:90:12533:11254 : [549, 717] ReadPath@Init: 61DFRAAXX100204:2:90:12533:11254 : [549, 717] mapped read [24]Read: >r261DFRAAXX100204:1:112:16960:13532/1 0 654 51 705 AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA - Read: r261DFRAAXX100204:1:112:16960:13532 has start: 0, end: 75 and sequence: AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA after extracting substring: AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 105 Threading read: r261DFRAAXX100204:1:112:16960:13532, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:1:112:16960:13532 sequence is: AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA updatePathRecursively(readName=r261DFRAAXX100204:1:112:16960:13532, locInSeq: 0 / 75, locInNode: 105 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (r261DFRAAXX100204:1:112:16960:13532) AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA 105 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 181 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:1:112:16960:13532 with length: 76 and base [76] ends at position [181] within node: 549 totaling 0 mismatches. FINAL BEST PATH for r261DFRAAXX100204:1:112:16960:13532 is [549] with total mm: 0 Read r261DFRAAXX100204:1:112:16960:13532 seq AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:181,readEnd:76] , trimmed to: [549] Threaded Read as: r261DFRAAXX100204:1:112:16960:13532 : [549] ReadPath@Init: r261DFRAAXX100204:1:112:16960:13532 : [549] mapped read [25]Read: >r261DFRAAXX100204:1:113:7690:4285/2 0 538 51 589 GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG - Read: r261DFRAAXX100204:1:113:7690:4285 has start: 0, end: 75 and sequence: GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG after extracting substring: GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG findPathInGraph: V:981, with seq: GGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCA trying to start the mapping to node 981 at position: 12 Threading read: r261DFRAAXX100204:1:113:7690:4285, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:1:113:7690:4285 sequence is: GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG updatePathRecursively(readName=r261DFRAAXX100204:1:113:7690:4285, locInSeq: 0 / 75, locInNode: 12 / 46, totalNumMm: 0 trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) -ALIGNING READ SEQ (r261DFRAAXX100204:1:113:7690:4285) GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAA 0 To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: GGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCA 12 shortcircuiting the zipper test, too many MM or execeeding local seq divergence *Trying again using full DP alignment: -running Needleman-Wunsch alignment of vertex to read Read 1 -GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCG 49 |||||||||||||||||||||||||||||||||| Vertex 1 GGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCA--------------- 35 vertex end gaps: 15 read end gaps: 0 mismatches encountered: 1 alignment divergence up to seq pos 34 = mm: 1, div:0.029411765 local vertex alignment divergence = 1 / 47 = 0.021276595 Reached end of node sequence. Readr261DFRAAXX100204:1:113:7690:4285 base [34] ends at position [47] within node: 981 totaling 1 mismatches. -reached end of vertex: 981, exploring next vertices for continued path extension: [549] Pursuing extension from : GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) to successors: [AGTCCACCAC...GGGAGCCACC:W6(V549_D3)] Exploring extension from node: 981 to node: 549 updatePathRecursively(readName=r261DFRAAXX100204:1:113:7690:4285, locInSeq: 34 / 75, locInNode: 23 / 190, totalNumMm: 1 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (r261DFRAAXX100204:1:113:7690:4285) AGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG 34 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: AGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 1, div:0.013157895 local vertex alignment divergence = 0 / 65 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:1:113:7690:4285 with length: 76 and base [76] ends at position [65] within node: 549 totaling 0 mismatches. r261DFRAAXX100204:1:113:7690:4285 best path so far from vertex: 981 to : 549 = [549], with total mm: 0 Done with exploring paths from vertex: 981 Paths and scores found are: explored path: [549] w/ mm: 0 AND best selected was: [549] w/ mm: 0 FINAL BEST PATH for r261DFRAAXX100204:1:113:7690:4285 is [981, 549] with total mm: 1 Read r261DFRAAXX100204:1:113:7690:4285 seq GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG threaded as: PATH_N_MM_COUNT: mismatches=1, path= [981, 549] positions: [981,nodeEnd:47,readEnd:34] [549,nodeEnd:65,readEnd:76] , trimmed to: [981, 549] Threaded Read as: r261DFRAAXX100204:1:113:7690:4285 : [981, 549] ReadPath@Init: r261DFRAAXX100204:1:113:7690:4285 : [981, 549] mapped read [26]Read: >r261DFRAAXX100204:1:115:8211:5116/2 0 473 51 524 AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG - Read: r261DFRAAXX100204:1:115:8211:5116 has start: 0, end: 75 and sequence: AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG after extracting substring: AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT trying to start the mapping to node 451 at position: 22 Threading read: r261DFRAAXX100204:1:115:8211:5116, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:1:115:8211:5116 sequence is: AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG updatePathRecursively(readName=r261DFRAAXX100204:1:115:8211:5116, locInSeq: 0 / 75, locInNode: 22 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (r261DFRAAXX100204:1:115:8211:5116) AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 22 zipper alignment mm: 0 alignment divergence up to seq pos 75 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 97 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:1:115:8211:5116 base [75] ends at position [97] within node: 451 totaling 0 mismatches. -reached end of vertex: 451, exploring next vertices for continued path extension: [981] Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] Exploring extension from node: 451 to node: 981 updatePathRecursively(readName=r261DFRAAXX100204:1:115:8211:5116, locInSeq: 75 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) -ALIGNING READ SEQ (r261DFRAAXX100204:1:115:8211:5116) G 75 To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: G 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 24 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:1:115:8211:5116 with length: 76 and base [76] ends at position [24] within node: 981 totaling 0 mismatches. r261DFRAAXX100204:1:115:8211:5116 best path so far from vertex: 451 to : 981 = [981], with total mm: 0 Done with exploring paths from vertex: 451 Paths and scores found are: explored path: [981] w/ mm: 0 AND best selected was: [981] w/ mm: 0 FINAL BEST PATH for r261DFRAAXX100204:1:115:8211:5116 is [451, 981] with total mm: 0 Read r261DFRAAXX100204:1:115:8211:5116 seq AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [451, 981] positions: [451,nodeEnd:97,readEnd:75] [981,nodeEnd:24,readEnd:76] , trimmed to: [451, 981] Threaded Read as: r261DFRAAXX100204:1:115:8211:5116 : [451, 981] ReadPath@Init: r261DFRAAXX100204:1:115:8211:5116 : [451, 981] mapped read [27]Read: >r261DFRAAXX100204:1:20:5538:6890/2 0 567 51 618 AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT - Read: r261DFRAAXX100204:1:20:5538:6890 has start: 0, end: 75 and sequence: AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT after extracting substring: AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 18 Threading read: r261DFRAAXX100204:1:20:5538:6890, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:1:20:5538:6890 sequence is: AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT updatePathRecursively(readName=r261DFRAAXX100204:1:20:5538:6890, locInSeq: 0 / 75, locInNode: 18 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (r261DFRAAXX100204:1:20:5538:6890) AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT 18 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 94 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:1:20:5538:6890 with length: 76 and base [76] ends at position [94] within node: 549 totaling 0 mismatches. FINAL BEST PATH for r261DFRAAXX100204:1:20:5538:6890 is [549] with total mm: 0 Read r261DFRAAXX100204:1:20:5538:6890 seq AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:94,readEnd:76] , trimmed to: [549] Threaded Read as: r261DFRAAXX100204:1:20:5538:6890 : [549] ReadPath@Init: r261DFRAAXX100204:1:20:5538:6890 : [549] mapped read [28]Read: >r261DFRAAXX100204:1:39:8793:18196/1 0 380 51 431 GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA - Read: r261DFRAAXX100204:1:39:8793:18196 has start: 0, end: 75 and sequence: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA after extracting substring: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA findPathInGraph: V:380, with seq: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG trying to start the mapping to node 380 at position: 0 Threading read: r261DFRAAXX100204:1:39:8793:18196, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:1:39:8793:18196 sequence is: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA updatePathRecursively(readName=r261DFRAAXX100204:1:39:8793:18196, locInSeq: 0 / 75, locInNode: 0 / 58, totalNumMm: 0 trying to continue the mapping to node GGCCACACGA...CTTCCTCAAG:W2(V380_D0) -ALIGNING READ SEQ (r261DFRAAXX100204:1:39:8793:18196) GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG 0 To VERTEX (GGCCACACGA...CTTCCTCAAG:W2(V380_D0)) SEQ: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG 0 zipper alignment mm: 0 alignment divergence up to seq pos 59 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 59 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:1:39:8793:18196 base [59] ends at position [59] within node: 380 totaling 0 mismatches. -reached end of vertex: 380, exploring next vertices for continued path extension: [982] Pursuing extension from : GGCCACACGA...CTTCCTCAAG:W2(V380_D0) to successors: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)] Exploring extension from node: 380 to node: 982 updatePathRecursively(readName=r261DFRAAXX100204:1:39:8793:18196, locInSeq: 59 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) -ALIGNING READ SEQ (r261DFRAAXX100204:1:39:8793:18196) CCTCATCAGCAAGAAGA 59 To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: CCTCATCAGCAAGAAGA 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 40 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:1:39:8793:18196 with length: 76 and base [76] ends at position [40] within node: 982 totaling 0 mismatches. r261DFRAAXX100204:1:39:8793:18196 best path so far from vertex: 380 to : 982 = [982], with total mm: 0 Done with exploring paths from vertex: 380 Paths and scores found are: explored path: [982] w/ mm: 0 AND best selected was: [982] w/ mm: 0 FINAL BEST PATH for r261DFRAAXX100204:1:39:8793:18196 is [380, 982] with total mm: 0 Read r261DFRAAXX100204:1:39:8793:18196 seq GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [380, 982] positions: [380,nodeEnd:59,readEnd:59] [982,nodeEnd:40,readEnd:76] , trimmed to: [380, 982] Threaded Read as: r261DFRAAXX100204:1:39:8793:18196 : [380, 982] ReadPath@Init: r261DFRAAXX100204:1:39:8793:18196 : [380, 982] mapped read [29]Read: >r261DFRAAXX100204:1:39:8793:18196/2 0 502 51 553 GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA - Read: r261DFRAAXX100204:1:39:8793:18196 has start: 0, end: 75 and sequence: GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA after extracting substring: GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT trying to start the mapping to node 451 at position: 51 Threading read: r261DFRAAXX100204:1:39:8793:18196, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:1:39:8793:18196 sequence is: GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA updatePathRecursively(readName=r261DFRAAXX100204:1:39:8793:18196, locInSeq: 0 / 75, locInNode: 51 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (r261DFRAAXX100204:1:39:8793:18196) GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 51 zipper alignment mm: 0 alignment divergence up to seq pos 46 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 97 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:1:39:8793:18196 base [46] ends at position [97] within node: 451 totaling 0 mismatches. -reached end of vertex: 451, exploring next vertices for continued path extension: [981] Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] Exploring extension from node: 451 to node: 981 updatePathRecursively(readName=r261DFRAAXX100204:1:39:8793:18196, locInSeq: 46 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) -ALIGNING READ SEQ (r261DFRAAXX100204:1:39:8793:18196) CAGCACTCTGAACCCTGTGAGGCA 46 To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: GAGCACTCTGAACCCTGTGAGGCA 23 zipper alignment mm: 1 alignment divergence up to seq pos 70 = mm: 1, div:0.014285714 local vertex alignment divergence = 1 / 47 = 0.021276595 Reached end of node sequence. Readr261DFRAAXX100204:1:39:8793:18196 base [70] ends at position [47] within node: 981 totaling 1 mismatches. -reached end of vertex: 981, exploring next vertices for continued path extension: [549] Pursuing extension from : GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) to successors: [AGTCCACCAC...GGGAGCCACC:W6(V549_D3)] Exploring extension from node: 981 to node: 549 updatePathRecursively(readName=r261DFRAAXX100204:1:39:8793:18196, locInSeq: 70 / 75, locInNode: 23 / 190, totalNumMm: 1 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (r261DFRAAXX100204:1:39:8793:18196) AGTCCA 70 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: AGTCCA 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 1, div:0.013157895 local vertex alignment divergence = 0 / 29 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:1:39:8793:18196 with length: 76 and base [76] ends at position [29] within node: 549 totaling 0 mismatches. r261DFRAAXX100204:1:39:8793:18196 best path so far from vertex: 981 to : 549 = [549], with total mm: 0 Done with exploring paths from vertex: 981 Paths and scores found are: explored path: [549] w/ mm: 0 AND best selected was: [549] w/ mm: 0 r261DFRAAXX100204:1:39:8793:18196 best path so far from vertex: 451 to : 981 = [981, 549], with total mm: 1 Done with exploring paths from vertex: 451 Paths and scores found are: explored path: [981, 549] w/ mm: 1 AND best selected was: [981, 549] w/ mm: 1 FINAL BEST PATH for r261DFRAAXX100204:1:39:8793:18196 is [451, 981, 549] with total mm: 1 Read r261DFRAAXX100204:1:39:8793:18196 seq GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA threaded as: PATH_N_MM_COUNT: mismatches=1, path= [451, 981, 549] positions: [451,nodeEnd:97,readEnd:46] [981,nodeEnd:47,readEnd:70] [549,nodeEnd:29,readEnd:76] , trimmed to: [451, 981, 549] Threaded Read as: r261DFRAAXX100204:1:39:8793:18196 : [451, 981, 549] ReadPath@Init: r261DFRAAXX100204:1:39:8793:18196 : [451, 981, 549] mapped read [30]Read: >r261DFRAAXX100204:1:67:9991:2232/1 0 401 51 452 GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG - Read: r261DFRAAXX100204:1:67:9991:2232 has start: 0, end: 75 and sequence: GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG after extracting substring: GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG findPathInGraph: V:380, with seq: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG trying to start the mapping to node 380 at position: 21 Threading read: r261DFRAAXX100204:1:67:9991:2232, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:1:67:9991:2232 sequence is: GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG updatePathRecursively(readName=r261DFRAAXX100204:1:67:9991:2232, locInSeq: 0 / 75, locInNode: 21 / 58, totalNumMm: 0 trying to continue the mapping to node GGCCACACGA...CTTCCTCAAG:W2(V380_D0) -ALIGNING READ SEQ (r261DFRAAXX100204:1:67:9991:2232) GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG 0 To VERTEX (GGCCACACGA...CTTCCTCAAG:W2(V380_D0)) SEQ: GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG 21 zipper alignment mm: 0 alignment divergence up to seq pos 38 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 59 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:1:67:9991:2232 base [38] ends at position [59] within node: 380 totaling 0 mismatches. -reached end of vertex: 380, exploring next vertices for continued path extension: [982] Pursuing extension from : GGCCACACGA...CTTCCTCAAG:W2(V380_D0) to successors: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)] Exploring extension from node: 380 to node: 982 updatePathRecursively(readName=r261DFRAAXX100204:1:67:9991:2232, locInSeq: 38 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) -ALIGNING READ SEQ (r261DFRAAXX100204:1:67:9991:2232) CCTCATCAGCAAGAAGAAATCTTT 38 To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: CCTCATCAGCAAGAAGAAATCTTT 23 zipper alignment mm: 0 alignment divergence up to seq pos 62 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 47 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:1:67:9991:2232 base [62] ends at position [47] within node: 982 totaling 0 mismatches. -reached end of vertex: 982, exploring next vertices for continued path extension: [440] Pursuing extension from : CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) to successors: [CTTTCCAAGTA:W8(V440_D2)] Exploring extension from node: 982 to node: 440 updatePathRecursively(readName=r261DFRAAXX100204:1:67:9991:2232, locInSeq: 62 / 75, locInNode: 23 / 33, totalNumMm: 0 trying to continue the mapping to node CTTTCCAAGTA:W8(V440_D2) -ALIGNING READ SEQ (r261DFRAAXX100204:1:67:9991:2232) CTTTCCAAGTA 62 To VERTEX (CTTTCCAAGTA:W8(V440_D2)) SEQ: CTTTCCAAGTA 23 zipper alignment mm: 0 alignment divergence up to seq pos 73 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 34 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:1:67:9991:2232 base [73] ends at position [34] within node: 440 totaling 0 mismatches. -reached end of vertex: 440, exploring next vertices for continued path extension: [451] Pursuing extension from : CTTTCCAAGTA:W8(V440_D2) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] Exploring extension from node: 440 to node: 451 updatePathRecursively(readName=r261DFRAAXX100204:1:67:9991:2232, locInSeq: 73 / 75, locInNode: 23 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (r261DFRAAXX100204:1:67:9991:2232) GTG 73 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: GTG 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 26 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:1:67:9991:2232 with length: 76 and base [76] ends at position [26] within node: 451 totaling 0 mismatches. r261DFRAAXX100204:1:67:9991:2232 best path so far from vertex: 440 to : 451 = [451], with total mm: 0 Done with exploring paths from vertex: 440 Paths and scores found are: explored path: [451] w/ mm: 0 AND best selected was: [451] w/ mm: 0 r261DFRAAXX100204:1:67:9991:2232 best path so far from vertex: 982 to : 440 = [440, 451], with total mm: 0 Done with exploring paths from vertex: 982 Paths and scores found are: explored path: [440, 451] w/ mm: 0 AND best selected was: [440, 451] w/ mm: 0 r261DFRAAXX100204:1:67:9991:2232 best path so far from vertex: 380 to : 982 = [982, 440, 451], with total mm: 0 Done with exploring paths from vertex: 380 Paths and scores found are: explored path: [982, 440, 451] w/ mm: 0 AND best selected was: [982, 440, 451] w/ mm: 0 FINAL BEST PATH for r261DFRAAXX100204:1:67:9991:2232 is [380, 982, 440, 451] with total mm: 0 Read r261DFRAAXX100204:1:67:9991:2232 seq GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [380, 982, 440, 451] positions: [380,nodeEnd:59,readEnd:38] [982,nodeEnd:47,readEnd:62] [440,nodeEnd:34,readEnd:73] [451,nodeEnd:26,readEnd:76] , trimmed to: [380, 982, 440, 451] Threaded Read as: r261DFRAAXX100204:1:67:9991:2232 : [380, 982, 440, 451] ReadPath@Init: r261DFRAAXX100204:1:67:9991:2232 : [380, 982, 440, 451] mapped read [31]Read: >r261DFRAAXX100204:1:70:1041:1268/1 18 680 25 687 GTGACAAAGAAAAGAGGTTGACAGACTCTCTAAGGGACATATGGGAGCTAGATAGAAAGCCCCGAGGAGGTAGCCG - Read: r261DFRAAXX100204:1:70:1041:1268 has start: 18, end: 49 and sequence: GTGACAAAGAAAAGAGGTTGACAGACTCTCTAAGGGACATATGGGAGCTAGATAGAAAGCCCCGAGGAGGTAGCCG after extracting substring: TGACAGACTCTCTAAGGGACATATGGGAGCTA findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 131 Threading read: r261DFRAAXX100204:1:70:1041:1268, length: 32, allowing for 2 max mismatches. Read: r261DFRAAXX100204:1:70:1041:1268 sequence is: TGACAGACTCTCTAAGGGACATATGGGAGCTA updatePathRecursively(readName=r261DFRAAXX100204:1:70:1041:1268, locInSeq: 0 / 31, locInNode: 131 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (r261DFRAAXX100204:1:70:1041:1268) TGACAGACTCTCTAAGGGACATATGGGAGCTA 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: TGACAGACTCTCTAAGGGACATATGGGAGCTA 131 zipper alignment mm: 0 alignment divergence up to seq pos 32 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 163 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:1:70:1041:1268 with length: 32 and base [32] ends at position [163] within node: 549 totaling 0 mismatches. FINAL BEST PATH for r261DFRAAXX100204:1:70:1041:1268 is [549] with total mm: 0 Read r261DFRAAXX100204:1:70:1041:1268 seq TGACAGACTCTCTAAGGGACATATGGGAGCTA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:163,readEnd:32] , trimmed to: [549] Threaded Read as: r261DFRAAXX100204:1:70:1041:1268 : [549] ReadPath@Init: r261DFRAAXX100204:1:70:1041:1268 : [549] mapped read [32]Read: >r261DFRAAXX100204:1:85:13720:15251/1 0 639 51 690 TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT - Read: r261DFRAAXX100204:1:85:13720:15251 has start: 0, end: 75 and sequence: TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT after extracting substring: TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 90 Threading read: r261DFRAAXX100204:1:85:13720:15251, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:1:85:13720:15251 sequence is: TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT updatePathRecursively(readName=r261DFRAAXX100204:1:85:13720:15251, locInSeq: 0 / 75, locInNode: 90 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (r261DFRAAXX100204:1:85:13720:15251) TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT 90 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 166 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:1:85:13720:15251 with length: 76 and base [76] ends at position [166] within node: 549 totaling 0 mismatches. FINAL BEST PATH for r261DFRAAXX100204:1:85:13720:15251 is [549] with total mm: 0 Read r261DFRAAXX100204:1:85:13720:15251 seq TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:166,readEnd:76] , trimmed to: [549] Threaded Read as: r261DFRAAXX100204:1:85:13720:15251 : [549] ReadPath@Init: r261DFRAAXX100204:1:85:13720:15251 : [549] mapped read [33]Read: >r261DFRAAXX100204:2:13:7749:17373/2 0 413 51 464 ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG - Read: r261DFRAAXX100204:2:13:7749:17373 has start: 0, end: 75 and sequence: ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG after extracting substring: ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG findPathInGraph: V:380, with seq: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG trying to start the mapping to node 380 at position: 33 Threading read: r261DFRAAXX100204:2:13:7749:17373, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:2:13:7749:17373 sequence is: ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG updatePathRecursively(readName=r261DFRAAXX100204:2:13:7749:17373, locInSeq: 0 / 75, locInNode: 33 / 58, totalNumMm: 0 trying to continue the mapping to node GGCCACACGA...CTTCCTCAAG:W2(V380_D0) -ALIGNING READ SEQ (r261DFRAAXX100204:2:13:7749:17373) ACTGGCTACAAACAGACTTCCTCAAG 0 To VERTEX (GGCCACACGA...CTTCCTCAAG:W2(V380_D0)) SEQ: ACTGGCTACAAACAGACTTCCTCAAG 33 zipper alignment mm: 0 alignment divergence up to seq pos 26 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 59 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:13:7749:17373 base [26] ends at position [59] within node: 380 totaling 0 mismatches. -reached end of vertex: 380, exploring next vertices for continued path extension: [982] Pursuing extension from : GGCCACACGA...CTTCCTCAAG:W2(V380_D0) to successors: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)] Exploring extension from node: 380 to node: 982 updatePathRecursively(readName=r261DFRAAXX100204:2:13:7749:17373, locInSeq: 26 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:13:7749:17373) CCTCATCAGCAAGAAGAAATCTTT 26 To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: CCTCATCAGCAAGAAGAAATCTTT 23 zipper alignment mm: 0 alignment divergence up to seq pos 50 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 47 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:13:7749:17373 base [50] ends at position [47] within node: 982 totaling 0 mismatches. -reached end of vertex: 982, exploring next vertices for continued path extension: [440] Pursuing extension from : CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) to successors: [CTTTCCAAGTA:W8(V440_D2)] Exploring extension from node: 982 to node: 440 updatePathRecursively(readName=r261DFRAAXX100204:2:13:7749:17373, locInSeq: 50 / 75, locInNode: 23 / 33, totalNumMm: 0 trying to continue the mapping to node CTTTCCAAGTA:W8(V440_D2) -ALIGNING READ SEQ (r261DFRAAXX100204:2:13:7749:17373) CTTTCCAAGTA 50 To VERTEX (CTTTCCAAGTA:W8(V440_D2)) SEQ: CTTTCCAAGTA 23 zipper alignment mm: 0 alignment divergence up to seq pos 61 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 34 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:13:7749:17373 base [61] ends at position [34] within node: 440 totaling 0 mismatches. -reached end of vertex: 440, exploring next vertices for continued path extension: [451] Pursuing extension from : CTTTCCAAGTA:W8(V440_D2) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] Exploring extension from node: 440 to node: 451 updatePathRecursively(readName=r261DFRAAXX100204:2:13:7749:17373, locInSeq: 61 / 75, locInNode: 23 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:13:7749:17373) GTGTCTTAACTCAGG 61 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: GTGTCTTAACTCAGG 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 38 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:2:13:7749:17373 with length: 76 and base [76] ends at position [38] within node: 451 totaling 0 mismatches. r261DFRAAXX100204:2:13:7749:17373 best path so far from vertex: 440 to : 451 = [451], with total mm: 0 Done with exploring paths from vertex: 440 Paths and scores found are: explored path: [451] w/ mm: 0 AND best selected was: [451] w/ mm: 0 r261DFRAAXX100204:2:13:7749:17373 best path so far from vertex: 982 to : 440 = [440, 451], with total mm: 0 Done with exploring paths from vertex: 982 Paths and scores found are: explored path: [440, 451] w/ mm: 0 AND best selected was: [440, 451] w/ mm: 0 r261DFRAAXX100204:2:13:7749:17373 best path so far from vertex: 380 to : 982 = [982, 440, 451], with total mm: 0 Done with exploring paths from vertex: 380 Paths and scores found are: explored path: [982, 440, 451] w/ mm: 0 AND best selected was: [982, 440, 451] w/ mm: 0 FINAL BEST PATH for r261DFRAAXX100204:2:13:7749:17373 is [380, 982, 440, 451] with total mm: 0 Read r261DFRAAXX100204:2:13:7749:17373 seq ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [380, 982, 440, 451] positions: [380,nodeEnd:59,readEnd:26] [982,nodeEnd:47,readEnd:50] [440,nodeEnd:34,readEnd:61] [451,nodeEnd:38,readEnd:76] , trimmed to: [380, 982, 440, 451] Threaded Read as: r261DFRAAXX100204:2:13:7749:17373 : [380, 982, 440, 451] ReadPath@Init: r261DFRAAXX100204:2:13:7749:17373 : [380, 982, 440, 451] mapped read [34]Read: >r261DFRAAXX100204:2:18:10392:2962/1 0 411 51 462 CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA - Read: r261DFRAAXX100204:2:18:10392:2962 has start: 0, end: 75 and sequence: CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA after extracting substring: CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA findPathInGraph: V:380, with seq: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG trying to start the mapping to node 380 at position: 31 Threading read: r261DFRAAXX100204:2:18:10392:2962, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:2:18:10392:2962 sequence is: CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA updatePathRecursively(readName=r261DFRAAXX100204:2:18:10392:2962, locInSeq: 0 / 75, locInNode: 31 / 58, totalNumMm: 0 trying to continue the mapping to node GGCCACACGA...CTTCCTCAAG:W2(V380_D0) -ALIGNING READ SEQ (r261DFRAAXX100204:2:18:10392:2962) CTACTGGCTACAAACAGACTTCCTCAAG 0 To VERTEX (GGCCACACGA...CTTCCTCAAG:W2(V380_D0)) SEQ: CTACTGGCTACAAACAGACTTCCTCAAG 31 zipper alignment mm: 0 alignment divergence up to seq pos 28 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 59 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:18:10392:2962 base [28] ends at position [59] within node: 380 totaling 0 mismatches. -reached end of vertex: 380, exploring next vertices for continued path extension: [982] Pursuing extension from : GGCCACACGA...CTTCCTCAAG:W2(V380_D0) to successors: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)] Exploring extension from node: 380 to node: 982 updatePathRecursively(readName=r261DFRAAXX100204:2:18:10392:2962, locInSeq: 28 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:18:10392:2962) GCTCATCAGCAAGAAGAAATCTTT 28 To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: CCTCATCAGCAAGAAGAAATCTTT 23 zipper alignment mm: 1 alignment divergence up to seq pos 52 = mm: 1, div:0.01923077 local vertex alignment divergence = 1 / 47 = 0.021276595 Reached end of node sequence. Readr261DFRAAXX100204:2:18:10392:2962 base [52] ends at position [47] within node: 982 totaling 1 mismatches. -reached end of vertex: 982, exploring next vertices for continued path extension: [440] Pursuing extension from : CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) to successors: [CTTTCCAAGTA:W8(V440_D2)] Exploring extension from node: 982 to node: 440 updatePathRecursively(readName=r261DFRAAXX100204:2:18:10392:2962, locInSeq: 52 / 75, locInNode: 23 / 33, totalNumMm: 1 trying to continue the mapping to node CTTTCCAAGTA:W8(V440_D2) -ALIGNING READ SEQ (r261DFRAAXX100204:2:18:10392:2962) CTTTCCAAGTA 52 To VERTEX (CTTTCCAAGTA:W8(V440_D2)) SEQ: CTTTCCAAGTA 23 zipper alignment mm: 0 alignment divergence up to seq pos 63 = mm: 1, div:0.015873017 local vertex alignment divergence = 0 / 34 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:18:10392:2962 base [63] ends at position [34] within node: 440 totaling 0 mismatches. -reached end of vertex: 440, exploring next vertices for continued path extension: [451] Pursuing extension from : CTTTCCAAGTA:W8(V440_D2) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] Exploring extension from node: 440 to node: 451 updatePathRecursively(readName=r261DFRAAXX100204:2:18:10392:2962, locInSeq: 63 / 75, locInNode: 23 / 96, totalNumMm: 1 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:18:10392:2962) GTGTCTTAACTCA 63 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: GTGTCTTAACTCA 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 1, div:0.013157895 local vertex alignment divergence = 0 / 36 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:2:18:10392:2962 with length: 76 and base [76] ends at position [36] within node: 451 totaling 0 mismatches. r261DFRAAXX100204:2:18:10392:2962 best path so far from vertex: 440 to : 451 = [451], with total mm: 0 Done with exploring paths from vertex: 440 Paths and scores found are: explored path: [451] w/ mm: 0 AND best selected was: [451] w/ mm: 0 r261DFRAAXX100204:2:18:10392:2962 best path so far from vertex: 982 to : 440 = [440, 451], with total mm: 0 Done with exploring paths from vertex: 982 Paths and scores found are: explored path: [440, 451] w/ mm: 0 AND best selected was: [440, 451] w/ mm: 0 r261DFRAAXX100204:2:18:10392:2962 best path so far from vertex: 380 to : 982 = [982, 440, 451], with total mm: 1 Done with exploring paths from vertex: 380 Paths and scores found are: explored path: [982, 440, 451] w/ mm: 1 AND best selected was: [982, 440, 451] w/ mm: 1 FINAL BEST PATH for r261DFRAAXX100204:2:18:10392:2962 is [380, 982, 440, 451] with total mm: 1 Read r261DFRAAXX100204:2:18:10392:2962 seq CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA threaded as: PATH_N_MM_COUNT: mismatches=1, path= [380, 982, 440, 451] positions: [380,nodeEnd:59,readEnd:28] [982,nodeEnd:47,readEnd:52] [440,nodeEnd:34,readEnd:63] [451,nodeEnd:36,readEnd:76] , trimmed to: [380, 982, 440, 451] Threaded Read as: r261DFRAAXX100204:2:18:10392:2962 : [380, 982, 440, 451] ReadPath@Init: r261DFRAAXX100204:2:18:10392:2962 : [380, 982, 440, 451] mapped read [35]Read: >r261DFRAAXX100204:2:27:5714:7307/1 0 657 51 708 GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG - Read: r261DFRAAXX100204:2:27:5714:7307 has start: 0, end: 75 and sequence: GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG after extracting substring: GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 108 Threading read: r261DFRAAXX100204:2:27:5714:7307, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:2:27:5714:7307 sequence is: GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG updatePathRecursively(readName=r261DFRAAXX100204:2:27:5714:7307, locInSeq: 0 / 75, locInNode: 108 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (r261DFRAAXX100204:2:27:5714:7307) GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG 108 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 184 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:2:27:5714:7307 with length: 76 and base [76] ends at position [184] within node: 549 totaling 0 mismatches. FINAL BEST PATH for r261DFRAAXX100204:2:27:5714:7307 is [549] with total mm: 0 Read r261DFRAAXX100204:2:27:5714:7307 seq GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:184,readEnd:76] , trimmed to: [549] Threaded Read as: r261DFRAAXX100204:2:27:5714:7307 : [549] ReadPath@Init: r261DFRAAXX100204:2:27:5714:7307 : [549] mapped read [36]Read: >r261DFRAAXX100204:2:33:12784:13782/1 0 606 51 657 TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG - Read: r261DFRAAXX100204:2:33:12784:13782 has start: 0, end: 75 and sequence: TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG after extracting substring: TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 57 Threading read: r261DFRAAXX100204:2:33:12784:13782, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:2:33:12784:13782 sequence is: TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG updatePathRecursively(readName=r261DFRAAXX100204:2:33:12784:13782, locInSeq: 0 / 75, locInNode: 57 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (r261DFRAAXX100204:2:33:12784:13782) TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG 57 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 133 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:2:33:12784:13782 with length: 76 and base [76] ends at position [133] within node: 549 totaling 0 mismatches. FINAL BEST PATH for r261DFRAAXX100204:2:33:12784:13782 is [549] with total mm: 0 Read r261DFRAAXX100204:2:33:12784:13782 seq TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:133,readEnd:76] , trimmed to: [549] Threaded Read as: r261DFRAAXX100204:2:33:12784:13782 : [549] ReadPath@Init: r261DFRAAXX100204:2:33:12784:13782 : [549] mapped read [37]Read: >r261DFRAAXX100204:2:34:11574:10433/2 0 422 51 473 AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG - Read: r261DFRAAXX100204:2:34:11574:10433 has start: 0, end: 75 and sequence: AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG after extracting substring: AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG findPathInGraph: V:982, with seq: GGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTT trying to start the mapping to node 982 at position: 5 Threading read: r261DFRAAXX100204:2:34:11574:10433, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:2:34:11574:10433 sequence is: AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG updatePathRecursively(readName=r261DFRAAXX100204:2:34:11574:10433, locInSeq: 0 / 75, locInNode: 5 / 46, totalNumMm: 0 trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:34:11574:10433) AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTC 0 To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: CAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTT 5 shortcircuiting the zipper test, too many MM or execeeding local seq divergence *Trying again using full DP alignment: -running Needleman-Wunsch alignment of vertex to read Read 1 -AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAA 49 ||||||||||||||||||||||||||||||||||||||||| Vertex 1 CAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTT-------- 42 vertex end gaps: 8 read end gaps: 0 mismatches encountered: 1 alignment divergence up to seq pos 41 = mm: 1, div:0.024390243 local vertex alignment divergence = 1 / 47 = 0.021276595 Reached end of node sequence. Readr261DFRAAXX100204:2:34:11574:10433 base [41] ends at position [47] within node: 982 totaling 1 mismatches. -reached end of vertex: 982, exploring next vertices for continued path extension: [440] Pursuing extension from : CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) to successors: [CTTTCCAAGTA:W8(V440_D2)] Exploring extension from node: 982 to node: 440 updatePathRecursively(readName=r261DFRAAXX100204:2:34:11574:10433, locInSeq: 41 / 75, locInNode: 23 / 33, totalNumMm: 1 trying to continue the mapping to node CTTTCCAAGTA:W8(V440_D2) -ALIGNING READ SEQ (r261DFRAAXX100204:2:34:11574:10433) CTTTCCAAGTA 41 To VERTEX (CTTTCCAAGTA:W8(V440_D2)) SEQ: CTTTCCAAGTA 23 zipper alignment mm: 0 alignment divergence up to seq pos 52 = mm: 1, div:0.01923077 local vertex alignment divergence = 0 / 34 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:34:11574:10433 base [52] ends at position [34] within node: 440 totaling 0 mismatches. -reached end of vertex: 440, exploring next vertices for continued path extension: [451] Pursuing extension from : CTTTCCAAGTA:W8(V440_D2) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] Exploring extension from node: 440 to node: 451 updatePathRecursively(readName=r261DFRAAXX100204:2:34:11574:10433, locInSeq: 52 / 75, locInNode: 23 / 96, totalNumMm: 1 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:34:11574:10433) GTGTCTTAACTCAGGAGATCATGG 52 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: GTGTCTTAACTCAGGAGATCATGG 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 1, div:0.013157895 local vertex alignment divergence = 0 / 47 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:2:34:11574:10433 with length: 76 and base [76] ends at position [47] within node: 451 totaling 0 mismatches. r261DFRAAXX100204:2:34:11574:10433 best path so far from vertex: 440 to : 451 = [451], with total mm: 0 Done with exploring paths from vertex: 440 Paths and scores found are: explored path: [451] w/ mm: 0 AND best selected was: [451] w/ mm: 0 r261DFRAAXX100204:2:34:11574:10433 best path so far from vertex: 982 to : 440 = [440, 451], with total mm: 0 Done with exploring paths from vertex: 982 Paths and scores found are: explored path: [440, 451] w/ mm: 0 AND best selected was: [440, 451] w/ mm: 0 FINAL BEST PATH for r261DFRAAXX100204:2:34:11574:10433 is [982, 440, 451] with total mm: 1 Read r261DFRAAXX100204:2:34:11574:10433 seq AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG threaded as: PATH_N_MM_COUNT: mismatches=1, path= [982, 440, 451] positions: [982,nodeEnd:47,readEnd:41] [440,nodeEnd:34,readEnd:52] [451,nodeEnd:47,readEnd:76] , trimmed to: [982, 440, 451] Threaded Read as: r261DFRAAXX100204:2:34:11574:10433 : [982, 440, 451] ReadPath@Init: r261DFRAAXX100204:2:34:11574:10433 : [982, 440, 451] mapped read [38]Read: >r261DFRAAXX100204:2:43:2649:2845/2 0 945 51 466 AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG - Read: r261DFRAAXX100204:2:43:2649:2845 has start: 0, end: 75 and sequence: AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG after extracting substring: AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG findPathInGraph: V:945, with seq: AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTA trying to start the mapping to node 945 at position: 0 Threading read: r261DFRAAXX100204:2:43:2649:2845, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:2:43:2649:2845 sequence is: AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG updatePathRecursively(readName=r261DFRAAXX100204:2:43:2649:2845, locInSeq: 0 / 75, locInNode: 0 / 58, totalNumMm: 0 trying to continue the mapping to node AGAATACAAA...TTTCCAAGTA:W1(V945_D0) -ALIGNING READ SEQ (r261DFRAAXX100204:2:43:2649:2845) AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTA 0 To VERTEX (AGAATACAAA...TTTCCAAGTA:W1(V945_D0)) SEQ: AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTA 0 zipper alignment mm: 0 alignment divergence up to seq pos 59 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 59 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:43:2649:2845 base [59] ends at position [59] within node: 945 totaling 0 mismatches. -reached end of vertex: 945, exploring next vertices for continued path extension: [451] Pursuing extension from : AGAATACAAA...TTTCCAAGTA:W1(V945_D0) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] Exploring extension from node: 945 to node: 451 updatePathRecursively(readName=r261DFRAAXX100204:2:43:2649:2845, locInSeq: 59 / 75, locInNode: 23 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:43:2649:2845) GTGTCTTAACTCAGGAG 59 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: GTGTCTTAACTCAGGAG 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 40 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:2:43:2649:2845 with length: 76 and base [76] ends at position [40] within node: 451 totaling 0 mismatches. r261DFRAAXX100204:2:43:2649:2845 best path so far from vertex: 945 to : 451 = [451], with total mm: 0 Done with exploring paths from vertex: 945 Paths and scores found are: explored path: [451] w/ mm: 0 AND best selected was: [451] w/ mm: 0 FINAL BEST PATH for r261DFRAAXX100204:2:43:2649:2845 is [945, 451] with total mm: 0 Read r261DFRAAXX100204:2:43:2649:2845 seq AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [945, 451] positions: [945,nodeEnd:59,readEnd:59] [451,nodeEnd:40,readEnd:76] , trimmed to: [945, 451] Threaded Read as: r261DFRAAXX100204:2:43:2649:2845 : [945, 451] ReadPath@Init: r261DFRAAXX100204:2:43:2649:2845 : [945, 451] mapped read [39]Read: >r261DFRAAXX100204:2:47:12270:6103/1 0 631 51 682 CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG - Read: r261DFRAAXX100204:2:47:12270:6103 has start: 0, end: 75 and sequence: CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG after extracting substring: CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 82 Threading read: r261DFRAAXX100204:2:47:12270:6103, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:2:47:12270:6103 sequence is: CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG updatePathRecursively(readName=r261DFRAAXX100204:2:47:12270:6103, locInSeq: 0 / 75, locInNode: 82 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (r261DFRAAXX100204:2:47:12270:6103) CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG 82 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 158 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:2:47:12270:6103 with length: 76 and base [76] ends at position [158] within node: 549 totaling 0 mismatches. FINAL BEST PATH for r261DFRAAXX100204:2:47:12270:6103 is [549] with total mm: 0 Read r261DFRAAXX100204:2:47:12270:6103 seq CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:158,readEnd:76] , trimmed to: [549] Threaded Read as: r261DFRAAXX100204:2:47:12270:6103 : [549] ReadPath@Init: r261DFRAAXX100204:2:47:12270:6103 : [549] mapped read [40]Read: >r261DFRAAXX100204:2:47:8841:7694/2 0 504 51 555 AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC - Read: r261DFRAAXX100204:2:47:8841:7694 has start: 0, end: 75 and sequence: AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC after extracting substring: AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT trying to start the mapping to node 451 at position: 53 Threading read: r261DFRAAXX100204:2:47:8841:7694, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:2:47:8841:7694 sequence is: AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC updatePathRecursively(readName=r261DFRAAXX100204:2:47:8841:7694, locInSeq: 0 / 75, locInNode: 53 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:47:8841:7694) AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 53 zipper alignment mm: 0 alignment divergence up to seq pos 44 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 97 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:47:8841:7694 base [44] ends at position [97] within node: 451 totaling 0 mismatches. -reached end of vertex: 451, exploring next vertices for continued path extension: [981] Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] Exploring extension from node: 451 to node: 981 updatePathRecursively(readName=r261DFRAAXX100204:2:47:8841:7694, locInSeq: 44 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:47:8841:7694) GAGCACTCTGAACCCTGTGAGGCA 44 To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: GAGCACTCTGAACCCTGTGAGGCA 23 zipper alignment mm: 0 alignment divergence up to seq pos 68 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 47 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:47:8841:7694 base [68] ends at position [47] within node: 981 totaling 0 mismatches. -reached end of vertex: 981, exploring next vertices for continued path extension: [549] Pursuing extension from : GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) to successors: [AGTCCACCAC...GGGAGCCACC:W6(V549_D3)] Exploring extension from node: 981 to node: 549 updatePathRecursively(readName=r261DFRAAXX100204:2:47:8841:7694, locInSeq: 68 / 75, locInNode: 23 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (r261DFRAAXX100204:2:47:8841:7694) AGTCCACC 68 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: AGTCCACC 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 31 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:2:47:8841:7694 with length: 76 and base [76] ends at position [31] within node: 549 totaling 0 mismatches. r261DFRAAXX100204:2:47:8841:7694 best path so far from vertex: 981 to : 549 = [549], with total mm: 0 Done with exploring paths from vertex: 981 Paths and scores found are: explored path: [549] w/ mm: 0 AND best selected was: [549] w/ mm: 0 r261DFRAAXX100204:2:47:8841:7694 best path so far from vertex: 451 to : 981 = [981, 549], with total mm: 0 Done with exploring paths from vertex: 451 Paths and scores found are: explored path: [981, 549] w/ mm: 0 AND best selected was: [981, 549] w/ mm: 0 FINAL BEST PATH for r261DFRAAXX100204:2:47:8841:7694 is [451, 981, 549] with total mm: 0 Read r261DFRAAXX100204:2:47:8841:7694 seq AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [451, 981, 549] positions: [451,nodeEnd:97,readEnd:44] [981,nodeEnd:47,readEnd:68] [549,nodeEnd:31,readEnd:76] , trimmed to: [451, 981, 549] Threaded Read as: r261DFRAAXX100204:2:47:8841:7694 : [451, 981, 549] ReadPath@Init: r261DFRAAXX100204:2:47:8841:7694 : [451, 981, 549] mapped read [41]Read: >r261DFRAAXX100204:2:59:18912:18239/1 0 485 51 536 CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC - Read: r261DFRAAXX100204:2:59:18912:18239 has start: 0, end: 75 and sequence: CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC after extracting substring: CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT trying to start the mapping to node 451 at position: 34 Threading read: r261DFRAAXX100204:2:59:18912:18239, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:2:59:18912:18239 sequence is: CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC updatePathRecursively(readName=r261DFRAAXX100204:2:59:18912:18239, locInSeq: 0 / 75, locInNode: 34 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:59:18912:18239) CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 34 zipper alignment mm: 0 alignment divergence up to seq pos 63 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 97 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:59:18912:18239 base [63] ends at position [97] within node: 451 totaling 0 mismatches. -reached end of vertex: 451, exploring next vertices for continued path extension: [981] Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] Exploring extension from node: 451 to node: 981 updatePathRecursively(readName=r261DFRAAXX100204:2:59:18912:18239, locInSeq: 63 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:59:18912:18239) GAGCACTCTGAAC 63 To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: GAGCACTCTGAAC 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 36 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:2:59:18912:18239 with length: 76 and base [76] ends at position [36] within node: 981 totaling 0 mismatches. r261DFRAAXX100204:2:59:18912:18239 best path so far from vertex: 451 to : 981 = [981], with total mm: 0 Done with exploring paths from vertex: 451 Paths and scores found are: explored path: [981] w/ mm: 0 AND best selected was: [981] w/ mm: 0 FINAL BEST PATH for r261DFRAAXX100204:2:59:18912:18239 is [451, 981] with total mm: 0 Read r261DFRAAXX100204:2:59:18912:18239 seq CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [451, 981] positions: [451,nodeEnd:97,readEnd:63] [981,nodeEnd:36,readEnd:76] , trimmed to: [451, 981] Threaded Read as: r261DFRAAXX100204:2:59:18912:18239 : [451, 981] ReadPath@Init: r261DFRAAXX100204:2:59:18912:18239 : [451, 981] mapped read [42]Read: >r261DFRAAXX100204:2:59:18912:18239/2 0 612 51 663 AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC - Read: r261DFRAAXX100204:2:59:18912:18239 has start: 0, end: 75 and sequence: AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC after extracting substring: AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 63 Threading read: r261DFRAAXX100204:2:59:18912:18239, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:2:59:18912:18239 sequence is: AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC updatePathRecursively(readName=r261DFRAAXX100204:2:59:18912:18239, locInSeq: 0 / 75, locInNode: 63 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (r261DFRAAXX100204:2:59:18912:18239) AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC 63 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 139 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:2:59:18912:18239 with length: 76 and base [76] ends at position [139] within node: 549 totaling 0 mismatches. FINAL BEST PATH for r261DFRAAXX100204:2:59:18912:18239 is [549] with total mm: 0 Read r261DFRAAXX100204:2:59:18912:18239 seq AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:139,readEnd:76] , trimmed to: [549] Threaded Read as: r261DFRAAXX100204:2:59:18912:18239 : [549] ReadPath@Init: r261DFRAAXX100204:2:59:18912:18239 : [549] mapped read [43]Read: >r261DFRAAXX100204:2:61:13619:6070/2 0 786 51 741 GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC - Read: r261DFRAAXX100204:2:61:13619:6070 has start: 0, end: 75 and sequence: GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC after extracting substring: GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC findPathInGraph: V:786, with seq: GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 786 at position: 0 Threading read: r261DFRAAXX100204:2:61:13619:6070, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:2:61:13619:6070 sequence is: GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC updatePathRecursively(readName=r261DFRAAXX100204:2:61:13619:6070, locInSeq: 0 / 75, locInNode: 0 / 49, totalNumMm: 0 trying to continue the mapping to node GCTAGGGGAA...GGGAGCCACC:W1(V786_D0) -ALIGNING READ SEQ (r261DFRAAXX100204:2:61:13619:6070) GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACC 0 To VERTEX (GCTAGGGGAA...GGGAGCCACC:W1(V786_D0)) SEQ: GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACC 0 zipper alignment mm: 0 alignment divergence up to seq pos 50 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 50 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:61:13619:6070 base [50] ends at position [50] within node: 786 totaling 0 mismatches. -reached end of vertex: 786, exploring next vertices for continued path extension: [717] Pursuing extension from : GCTAGGGGAA...GGGAGCCACC:W1(V786_D0) to successors: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)] Exploring extension from node: 786 to node: 717 updatePathRecursively(readName=r261DFRAAXX100204:2:61:13619:6070, locInSeq: 50 / 75, locInNode: 23 / 64, totalNumMm: 0 trying to continue the mapping to node AGCCACAGGT...CTTCCTGTGA:W5(V717_D1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:61:13619:6070) AGCCACAGGTACCTGATGGAAATGCC 50 To VERTEX (AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)) SEQ: AGCCACAGGTACCTGATGGAAATGCC 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 49 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:2:61:13619:6070 with length: 76 and base [76] ends at position [49] within node: 717 totaling 0 mismatches. r261DFRAAXX100204:2:61:13619:6070 best path so far from vertex: 786 to : 717 = [717], with total mm: 0 Done with exploring paths from vertex: 786 Paths and scores found are: explored path: [717] w/ mm: 0 AND best selected was: [717] w/ mm: 0 FINAL BEST PATH for r261DFRAAXX100204:2:61:13619:6070 is [786, 717] with total mm: 0 Read r261DFRAAXX100204:2:61:13619:6070 seq GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [786, 717] positions: [786,nodeEnd:50,readEnd:50] [717,nodeEnd:49,readEnd:76] , trimmed to: [786, 717] Threaded Read as: r261DFRAAXX100204:2:61:13619:6070 : [786, 717] ReadPath@Init: r261DFRAAXX100204:2:61:13619:6070 : [786, 717] mapped read [44]Read: >r261DFRAAXX100204:2:64:15138:21125/1 0 706 51 757 GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA - Read: r261DFRAAXX100204:2:64:15138:21125 has start: 0, end: 75 and sequence: GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA after extracting substring: GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 157 Threading read: r261DFRAAXX100204:2:64:15138:21125, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:2:64:15138:21125 sequence is: GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA updatePathRecursively(readName=r261DFRAAXX100204:2:64:15138:21125, locInSeq: 0 / 75, locInNode: 157 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (r261DFRAAXX100204:2:64:15138:21125) GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC 157 zipper alignment mm: 0 alignment divergence up to seq pos 34 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 191 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:64:15138:21125 base [34] ends at position [191] within node: 549 totaling 0 mismatches. -reached end of vertex: 549, exploring next vertices for continued path extension: [717] Pursuing extension from : AGTCCACCAC...GGGAGCCACC:W6(V549_D3) to successors: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)] Exploring extension from node: 549 to node: 717 updatePathRecursively(readName=r261DFRAAXX100204:2:64:15138:21125, locInSeq: 34 / 75, locInNode: 23 / 64, totalNumMm: 0 trying to continue the mapping to node AGCCACAGGT...CTTCCTGTGA:W5(V717_D1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:64:15138:21125) AGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA 34 To VERTEX (AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)) SEQ: AGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 65 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:2:64:15138:21125 with length: 76 and base [76] ends at position [65] within node: 717 totaling 0 mismatches. r261DFRAAXX100204:2:64:15138:21125 best path so far from vertex: 549 to : 717 = [717], with total mm: 0 Done with exploring paths from vertex: 549 Paths and scores found are: explored path: [717] w/ mm: 0 AND best selected was: [717] w/ mm: 0 FINAL BEST PATH for r261DFRAAXX100204:2:64:15138:21125 is [549, 717] with total mm: 0 Read r261DFRAAXX100204:2:64:15138:21125 seq GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549, 717] positions: [549,nodeEnd:191,readEnd:34] [717,nodeEnd:65,readEnd:76] , trimmed to: [549, 717] Threaded Read as: r261DFRAAXX100204:2:64:15138:21125 : [549, 717] ReadPath@Init: r261DFRAAXX100204:2:64:15138:21125 : [549, 717] mapped read [45]Read: >r261DFRAAXX100204:2:75:16853:12097/1 0 507 51 558 GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC - Read: r261DFRAAXX100204:2:75:16853:12097 has start: 0, end: 75 and sequence: GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC after extracting substring: GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT trying to start the mapping to node 451 at position: 56 Threading read: r261DFRAAXX100204:2:75:16853:12097, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:2:75:16853:12097 sequence is: GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC updatePathRecursively(readName=r261DFRAAXX100204:2:75:16853:12097, locInSeq: 0 / 75, locInNode: 56 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:75:16853:12097) GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 56 zipper alignment mm: 0 alignment divergence up to seq pos 41 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 97 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:75:16853:12097 base [41] ends at position [97] within node: 451 totaling 0 mismatches. -reached end of vertex: 451, exploring next vertices for continued path extension: [981] Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] Exploring extension from node: 451 to node: 981 updatePathRecursively(readName=r261DFRAAXX100204:2:75:16853:12097, locInSeq: 41 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:75:16853:12097) GAGCACTCTGAACCCTGTGAGGCA 41 To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: GAGCACTCTGAACCCTGTGAGGCA 23 zipper alignment mm: 0 alignment divergence up to seq pos 65 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 47 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:75:16853:12097 base [65] ends at position [47] within node: 981 totaling 0 mismatches. -reached end of vertex: 981, exploring next vertices for continued path extension: [549] Pursuing extension from : GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) to successors: [AGTCCACCAC...GGGAGCCACC:W6(V549_D3)] Exploring extension from node: 981 to node: 549 updatePathRecursively(readName=r261DFRAAXX100204:2:75:16853:12097, locInSeq: 65 / 75, locInNode: 23 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (r261DFRAAXX100204:2:75:16853:12097) AGTCCACCACC 65 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: AGTCCACCACC 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 34 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:2:75:16853:12097 with length: 76 and base [76] ends at position [34] within node: 549 totaling 0 mismatches. r261DFRAAXX100204:2:75:16853:12097 best path so far from vertex: 981 to : 549 = [549], with total mm: 0 Done with exploring paths from vertex: 981 Paths and scores found are: explored path: [549] w/ mm: 0 AND best selected was: [549] w/ mm: 0 r261DFRAAXX100204:2:75:16853:12097 best path so far from vertex: 451 to : 981 = [981, 549], with total mm: 0 Done with exploring paths from vertex: 451 Paths and scores found are: explored path: [981, 549] w/ mm: 0 AND best selected was: [981, 549] w/ mm: 0 FINAL BEST PATH for r261DFRAAXX100204:2:75:16853:12097 is [451, 981, 549] with total mm: 0 Read r261DFRAAXX100204:2:75:16853:12097 seq GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [451, 981, 549] positions: [451,nodeEnd:97,readEnd:41] [981,nodeEnd:47,readEnd:65] [549,nodeEnd:34,readEnd:76] , trimmed to: [451, 981, 549] Threaded Read as: r261DFRAAXX100204:2:75:16853:12097 : [451, 981, 549] ReadPath@Init: r261DFRAAXX100204:2:75:16853:12097 : [451, 981, 549] mapped read [46]Read: >r261DFRAAXX100204:2:90:12533:11254/1 0 696 51 747 GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA - Read: r261DFRAAXX100204:2:90:12533:11254 has start: 0, end: 75 and sequence: GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA after extracting substring: GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 147 Threading read: r261DFRAAXX100204:2:90:12533:11254, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:2:90:12533:11254 sequence is: GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA updatePathRecursively(readName=r261DFRAAXX100204:2:90:12533:11254, locInSeq: 0 / 75, locInNode: 147 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (r261DFRAAXX100204:2:90:12533:11254) GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC 147 zipper alignment mm: 0 alignment divergence up to seq pos 44 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 191 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:90:12533:11254 base [44] ends at position [191] within node: 549 totaling 0 mismatches. -reached end of vertex: 549, exploring next vertices for continued path extension: [717] Pursuing extension from : AGTCCACCAC...GGGAGCCACC:W6(V549_D3) to successors: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)] Exploring extension from node: 549 to node: 717 updatePathRecursively(readName=r261DFRAAXX100204:2:90:12533:11254, locInSeq: 44 / 75, locInNode: 23 / 64, totalNumMm: 0 trying to continue the mapping to node AGCCACAGGT...CTTCCTGTGA:W5(V717_D1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:90:12533:11254) AGCCACAGGTACCTGATGGAAATGCCGGCTCA 44 To VERTEX (AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)) SEQ: AGCCACAGGTACCTGATGGAAATGCCGGCTCA 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 55 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:2:90:12533:11254 with length: 76 and base [76] ends at position [55] within node: 717 totaling 0 mismatches. r261DFRAAXX100204:2:90:12533:11254 best path so far from vertex: 549 to : 717 = [717], with total mm: 0 Done with exploring paths from vertex: 549 Paths and scores found are: explored path: [717] w/ mm: 0 AND best selected was: [717] w/ mm: 0 FINAL BEST PATH for r261DFRAAXX100204:2:90:12533:11254 is [549, 717] with total mm: 0 Read r261DFRAAXX100204:2:90:12533:11254 seq GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549, 717] positions: [549,nodeEnd:191,readEnd:44] [717,nodeEnd:55,readEnd:76] , trimmed to: [549, 717] Threaded Read as: r261DFRAAXX100204:2:90:12533:11254 : [549, 717] ReadPath@Init: r261DFRAAXX100204:2:90:12533:11254 : [549, 717] number of reads threaded = 46 (from total of 46) which came from 42 pairs Read name to pairing info: r261DFRAAXX100204:2:47:8841:7694 => [451, 981, 549] Read name to pairing info: r261DFRAAXX100204:1:67:9991:2232 => [380, 982, 440, 451] Read name to pairing info: 61DFRAAXX100204:2:27:5714:7307 => [549] Read name to pairing info: r261DFRAAXX100204:2:27:5714:7307 => [549] Read name to pairing info: 61DFRAAXX100204:1:70:1041:1268 => [549] Read name to pairing info: 61DFRAAXX100204:1:113:7690:4285 => [981, 549] Read name to pairing info: 61DFRAAXX100204:1:67:9991:2232 => [380, 982, 440, 451] Read name to pairing info: r261DFRAAXX100204:1:113:7690:4285 => [981, 549] Read name to pairing info: 61DFRAAXX100204:2:43:2649:2845 => [945, 451] Read name to pairing info: r261DFRAAXX100204:1:112:16960:13532 => [549] Read name to pairing info: r261DFRAAXX100204:2:13:7749:17373 => [380, 982, 440, 451] Read name to pairing info: 61DFRAAXX100204:2:90:12533:11254 => [549, 717] Read name to pairing info: 61DFRAAXX100204:1:20:5538:6890 => [549] Read name to pairing info: r261DFRAAXX100204:2:61:13619:6070 => [786, 717] Read name to pairing info: r261DFRAAXX100204:1:20:5538:6890 => [549] Read name to pairing info: 61DFRAAXX100204:1:112:16960:13532 => [549] Read name to pairing info: 61DFRAAXX100204:2:61:13619:6070 => [786, 717] Read name to pairing info: r261DFRAAXX100204:2:34:11574:10433 => [982, 440, 451] Read name to pairing info: 61DFRAAXX100204:2:13:7749:17373 => [380, 982, 440, 451] Read name to pairing info: r261DFRAAXX100204:2:90:12533:11254 => [549, 717] Read name to pairing info: 61DFRAAXX100204:2:47:8841:7694 => [451, 981, 549] Read name to pairing info: 61DFRAAXX100204:1:115:8211:5116 => [451, 981] Read name to pairing info: 61DFRAAXX100204:2:34:11574:10433 => [982, 440, 451] Read name to pairing info: r261DFRAAXX100204:1:85:13720:15251 => [549] Read name to pairing info: r261DFRAAXX100204:1:39:8793:18196 => [380, 982][451, 981, 549] Read name to pairing info: 61DFRAAXX100204:2:33:12784:13782 => [549] Read name to pairing info: 61DFRAAXX100204:2:47:12270:6103 => [549] Read name to pairing info: 61DFRAAXX100204:1:39:8793:18196 => [380, 982][451, 981, 549] Read name to pairing info: r261DFRAAXX100204:2:75:16853:12097 => [451, 981, 549] Read name to pairing info: r261DFRAAXX100204:2:59:18912:18239 => [451, 981][549] Read name to pairing info: 61DFRAAXX100204:1:85:13720:15251 => [549] Read name to pairing info: r261DFRAAXX100204:2:47:12270:6103 => [549] Read name to pairing info: r261DFRAAXX100204:2:33:12784:13782 => [549] Read name to pairing info: r261DFRAAXX100204:2:64:15138:21125 => [549, 717] Read name to pairing info: r261DFRAAXX100204:2:18:10392:2962 => [380, 982, 440, 451] Read name to pairing info: 61DFRAAXX100204:2:59:18912:18239 => [451, 981][549] Read name to pairing info: 61DFRAAXX100204:2:18:10392:2962 => [380, 982, 440, 451] Read name to pairing info: 61DFRAAXX100204:2:64:15138:21125 => [549, 717] Read name to pairing info: r261DFRAAXX100204:2:43:2649:2845 => [945, 451] Read name to pairing info: r261DFRAAXX100204:1:115:8211:5116 => [451, 981] Read name to pairing info: 61DFRAAXX100204:2:75:16853:12097 => [451, 981, 549] Read name to pairing info: r261DFRAAXX100204:1:70:1041:1268 => [549] SECTION ================== Pairing up the reads into PairPaths =========================== we have 1 reads supporting the path: PairPath [_paths=[[451, 981, 549], []]] we have 1 reads supporting the path: PairPath [_paths=[[380, 982, 440, 451], []]] we have 1 reads supporting the path: PairPath [_paths=[[549], []]] we have 2 reads supporting the path: PairPath [_paths=[[549], []]] we have 3 reads supporting the path: PairPath [_paths=[[549], []]] we have 1 reads supporting the path: PairPath [_paths=[[981, 549], []]] we have 2 reads supporting the path: PairPath [_paths=[[380, 982, 440, 451], []]] we have 2 reads supporting the path: PairPath [_paths=[[981, 549], []]] we have 1 reads supporting the path: PairPath [_paths=[[945, 451], []]] we have 4 reads supporting the path: PairPath [_paths=[[549], []]] we have 3 reads supporting the path: PairPath [_paths=[[380, 982, 440, 451], []]] we have 1 reads supporting the path: PairPath [_paths=[[549, 717], []]] we have 5 reads supporting the path: PairPath [_paths=[[549], []]] we have 1 reads supporting the path: PairPath [_paths=[[786, 717], []]] we have 6 reads supporting the path: PairPath [_paths=[[549], []]] we have 7 reads supporting the path: PairPath [_paths=[[549], []]] we have 2 reads supporting the path: PairPath [_paths=[[786, 717], []]] we have 1 reads supporting the path: PairPath [_paths=[[982, 440, 451], []]] we have 4 reads supporting the path: PairPath [_paths=[[380, 982, 440, 451], []]] we have 2 reads supporting the path: PairPath [_paths=[[549, 717], []]] we have 2 reads supporting the path: PairPath [_paths=[[451, 981, 549], []]] we have 1 reads supporting the path: PairPath [_paths=[[451, 981], []]] we have 2 reads supporting the path: PairPath [_paths=[[982, 440, 451], []]] we have 8 reads supporting the path: PairPath [_paths=[[549], []]] we have 1 reads supporting the path: PairPath [_paths=[[380, 982], [451, 981, 549]]] we have 9 reads supporting the path: PairPath [_paths=[[549], []]] we have 10 reads supporting the path: PairPath [_paths=[[549], []]] we have 2 reads supporting the path: PairPath [_paths=[[380, 982], [451, 981, 549]]] we have 3 reads supporting the path: PairPath [_paths=[[451, 981, 549], []]] we have 1 reads supporting the path: PairPath [_paths=[[451, 981], [549]]] we have 11 reads supporting the path: PairPath [_paths=[[549], []]] we have 12 reads supporting the path: PairPath [_paths=[[549], []]] we have 13 reads supporting the path: PairPath [_paths=[[549], []]] we have 3 reads supporting the path: PairPath [_paths=[[549, 717], []]] we have 5 reads supporting the path: PairPath [_paths=[[380, 982, 440, 451], []]] we have 2 reads supporting the path: PairPath [_paths=[[451, 981], [549]]] we have 6 reads supporting the path: PairPath [_paths=[[380, 982, 440, 451], []]] we have 4 reads supporting the path: PairPath [_paths=[[549, 717], []]] we have 2 reads supporting the path: PairPath [_paths=[[945, 451], []]] we have 2 reads supporting the path: PairPath [_paths=[[451, 981], []]] we have 4 reads supporting the path: PairPath [_paths=[[451, 981, 549], []]] we have 14 reads supporting the path: PairPath [_paths=[[549], []]] number of reads used = 42 ## Read PathPair results: 38 singletons, num pairs: 4, num pairs discarded: 0 Printing Pair Paths Before DAG Overlap Layout ------------------ Start Vertex:945 PairPaths@Init: PairPath [_paths=[[945, 451], []]]=2 Start Vertex:786 PairPaths@Init: PairPath [_paths=[[786, 717], []]]=2 Start Vertex:451 PairPaths@Init: PairPath [_paths=[[451, 981, 549], []]]=4 PairPaths@Init: PairPath [_paths=[[451, 981], [549]]]=2 PairPaths@Init: PairPath [_paths=[[451, 981], []]]=2 Start Vertex:549 PairPaths@Init: PairPath [_paths=[[549, 717], []]]=4 PairPaths@Init: PairPath [_paths=[[549], []]]=14 Start Vertex:981 PairPaths@Init: PairPath [_paths=[[981, 549], []]]=2 Start Vertex:982 PairPaths@Init: PairPath [_paths=[[982, 440, 451], []]]=2 Start Vertex:380 PairPaths@Init: PairPath [_paths=[[380, 982], [451, 981, 549]]]=2 PairPaths@Init: PairPath [_paths=[[380, 982, 440, 451], []]]=6 SECTION ======== Create DAG from Overlap Layout ============ Noncontained paths: [[380, 982, 440, 451], [451, 981, 549], [786, 717], [549, 717], [945, 451]] Node[451] has repeat count: 3 Node[549] has repeat count: 2 Node[717] has repeat count: 2 Node[945] has repeat count: 1 Node[786] has repeat count: 1 Node[981] has repeat count: 1 Node[982] has repeat count: 1 Node[440] has repeat count: 1 Node[380] has repeat count: 1 path PN1::[380, 982, 440, 451] extends no path PathNode Overlap Detected: [overlap: 1] PN1::[380, 982, 440, 451] extended by PN2::[451, 981, 549] PathNode Overlap Detected: [overlap: 1] PN5::[945, 451] extended by PN2::[451, 981, 549] extension of: PN1::[380, 982, 440, 451] by PN2::[451, 981, 549] has 1 terminal matches. extension of: PN5::[945, 451] by PN2::[451, 981, 549] has 1 terminal matches. path PN3::[786, 717] extends no path PathNode Overlap Detected: [overlap: 1] PN2::[451, 981, 549] extended by PN4::[549, 717] extension of: PN2::[451, 981, 549] by PN4::[549, 717] has 1 terminal matches. path PN5::[945, 451] extends no path PathNodeDescription: PN2::[451, 981, 549] PathNodeDescription: PN5::[945, 451] PathNodeDescription: PN3::[786, 717] PathNodeDescription: PN4::[549, 717] PathNodeDescription: PN1::[380, 982, 440, 451] // Breaking cycles in Path Overlap Graph (POG), Round: 1 SECTION ======== Convert Path-DAG to SeqVertex-DAG ============ prep_for_DAG_collapse: PN2 CurrVert:[983, 984, 985], OrigVert:[451, 981, 549] prep_for_DAG_collapse: PN5 CurrVert:[986, 987], OrigVert:[945, 451] prep_for_DAG_collapse: PN3 CurrVert:[988, 989], OrigVert:[786, 717] prep_for_DAG_collapse: PN4 CurrVert:[990, 991], OrigVert:[549, 717] prep_for_DAG_collapse: PN1 CurrVert:[992, 993, 994, 995], OrigVert:[380, 982, 440, 451] DFS_path_to_graph: targeting: PN5::[945, 451] DFS_path_to_graph: targeting: PN2::[451, 981, 549] DFS_path_to_graph: targeting: PN4::[549, 717] DFS_path_to_graph: targeting: PN3::[786, 717] DFS_path_to_graph: targeting: PN1::[380, 982, 440, 451] ## Round: 1 Zipping up. ## zip_up() attempt_zip_merge_SeqVertices([AGTCCACCAC...GGGAGCCACC:W6(V985_549_D11), AGCACTCTGA...GGGAGCCACC:W6(V990_549_D4)]) parent_depths[10], child_depths: [12, 12] UpZipMerging nodes: [AGCACTCTGA...GGGAGCCACC:W6(V985_549_D11), AGCACTCTGA...GGGAGCCACC:W6(V990_549_D4)] to AGTCCACCAC...GGGAGCCACC:W6(V996_549_D4) Zip up merged: 2 nodes. ## Round: 2 Zipping up. ## zip_up() attempt_zip_merge_SeqVertices([GTGTCTTAAC...GAAGCTCCCT:W6(V995_451_D8), GAAGAAATCT...GAAGCTCCCT:W6(V983_451_D1), GTGTCTTAAC...GAAGCTCCCT:W6(V987_451_D5)]) parent_depths[7, 2], child_depths: [9, 9, 9] UpZipMerging nodes: [GAAGAAATCT...GAAGCTCCCT:W6(V995_451_D8), GAAGAAATCT...GAAGCTCCCT:W6(V983_451_D1), GAAGAAATCT...GAAGCTCCCT:W6(V987_451_D5)] to GTGTCTTAAC...GAAGCTCCCT:W6(V997_451_D1) Zip up merged: 3 nodes. ## Round: 3 Zipping up. ## zip_up() Zip up merged: 0 nodes. ## Round: 4 Zipping down. Zip down merged: 0 nodes. ## Round: 5 Zipping up. ## zip_up() Zip up merged: 0 nodes. ## Round: 6 Zipping down. Zip down merged: 0 nodes. destroy_unzipped_duplicates_above() Old_to_new_vertex_id_mapping: 992 => 992 (stays same) Old_to_new_vertex_id_mapping: 986 => 986 (stays same) Old_to_new_vertex_id_mapping: 988 => 988 (stays same) Old_to_new_vertex_id_mapping: 993 => 993 (stays same) Old_to_new_vertex_id_mapping: 989 => 989 (stays same) Old_to_new_vertex_id_mapping: 994 => 994 (stays same) Old_to_new_vertex_id_mapping: 995 => 997 Old_to_new_vertex_id_mapping: 983 => 997 Old_to_new_vertex_id_mapping: 987 => 997 Old_to_new_vertex_id_mapping: 984 => 984 (stays same) Old_to_new_vertex_id_mapping: 985 => 996 Old_to_new_vertex_id_mapping: 990 => 996 Old_to_new_vertex_id_mapping: 991 => 991 (stays same) Old-to-new-path mappings: {[945, 451]=[986, 997], [451, 981, 549]=[997, 984, 996], [549, 717]=[996, 991], [786, 717]=[988, 989], [380, 982, 440, 451]=[992, 993, 994, 997]} update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[945, 451], []]] has support: 2 update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[549, 717], []]] has support: 4 update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[982, 440, 451], []]] has support: 2 update_PairPaths_using_overlapDAG_refined_paths, p1: [982, 440, 451] mapped to: [[993, 994, 997]] update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[451, 981, 549], []]] has support: 4 update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[451, 981], [549]]] has support: 2 update_PairPaths_using_overlapDAG_refined_paths, p1: [451, 981] mapped to: [[997, 984]] update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[786, 717], []]] has support: 2 update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[451, 981], []]] has support: 2 update_PairPaths_using_overlapDAG_refined_paths, p1: [451, 981] mapped to: [[997, 984]] update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[380, 982], [451, 981, 549]]] has support: 2 update_PairPaths_using_overlapDAG_refined_paths, p1: [380, 982] mapped to: [[992, 993]] update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[549], []]] has support: 14 update_PairPaths_using_overlapDAG_refined_paths, p1: [549] mapped to: [[996]] update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[981, 549], []]] has support: 2 update_PairPaths_using_overlapDAG_refined_paths, p1: [981, 549] mapped to: [[984, 996]] update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[380, 982, 440, 451], []]] has support: 6 Printing Pair Paths ------------------ Start Vertex:992 PairPaths@PostOverlapLayout: PairPath [_paths=[[992, 993], [997, 984, 996]]]=2 PairPaths@PostOverlapLayout: PairPath [_paths=[[992, 993, 994, 997], []]]=6 Start Vertex:993 PairPaths@PostOverlapLayout: PairPath [_paths=[[993, 994, 997], []]]=2 Start Vertex:996 PairPaths@PostOverlapLayout: PairPath [_paths=[[996, 991], []]]=4 PairPaths@PostOverlapLayout: PairPath [_paths=[[996], []]]=14 Start Vertex:997 PairPaths@PostOverlapLayout: PairPath [_paths=[[997, 984], [996]]]=2 PairPaths@PostOverlapLayout: PairPath [_paths=[[997, 984], []]]=2 PairPaths@PostOverlapLayout: PairPath [_paths=[[997, 984, 996], []]]=4 Start Vertex:984 PairPaths@PostOverlapLayout: PairPath [_paths=[[984, 996], []]]=2 Start Vertex:986 PairPaths@PostOverlapLayout: PairPath [_paths=[[986, 997], []]]=2 Start Vertex:988 PairPaths@PostOverlapLayout: PairPath [_paths=[[988, 989], []]]=2 SECTION ======= Reorganize Read Pairings ========= NODE_DESCR: GGCCACACGA...CTTCCTCAAG:W2(V992_380_D0) Preds: [] Succ: [CCTCATCAGCAAGAAGAAATCTTT:W7(V993_982_D1) ] NODE_DESCR: CCTCATCAGCAAGAAGAAATCTTT:W7(V993_982_D1) Preds: [GGCCACACGA...CTTCCTCAAG:W2(V992_380_D0) ] Succ: [CTTTCCAAGTA:W8(V994_440_D2) ] NODE_DESCR: CTTTCCAAGTA:W8(V994_440_D2) Preds: [CCTCATCAGCAAGAAGAAATCTTT:W7(V993_982_D1) ] Succ: [GTGTCTTAAC...GAAGCTCCCT:W6(V997_451_D1) ] NODE_DESCR: AGTCCACCAC...GGGAGCCACC:W6(V996_549_D3) Preds: [GAGCACTCTGAACCCTGTGAGGCA:W6(V984_981_D2) ] Succ: [AGCCACAGGT...CTTCCTGTGA:W5(V991_717_D4) ] NODE_DESCR: GTGTCTTAAC...GAAGCTCCCT:W6(V997_451_D1) Preds: [CTTTCCAAGTA:W8(V994_440_D2) AGAATACAAA...TTTCCAAGTA:W1(V986_945_D0) ] Succ: [GAGCACTCTGAACCCTGTGAGGCA:W6(V984_981_D2) ] NODE_DESCR: GAGCACTCTGAACCCTGTGAGGCA:W6(V984_981_D2) Preds: [GTGTCTTAAC...GAAGCTCCCT:W6(V997_451_D1) ] Succ: [AGTCCACCAC...GGGAGCCACC:W6(V996_549_D3) ] NODE_DESCR: AGAATACAAA...TTTCCAAGTA:W1(V986_945_D0) Preds: [] Succ: [GTGTCTTAAC...GAAGCTCCCT:W6(V997_451_D1) ] NODE_DESCR: GCTAGGGGAA...GGGAGCCACC:W1(V988_786_D0) Preds: [] Succ: [AGCCACAGGT...CTTCCTGTGA:W5(V989_717_D1) ] NODE_DESCR: AGCCACAGGT...CTTCCTGTGA:W5(V989_717_D1) Preds: [GCTAGGGGAA...GGGAGCCACC:W1(V988_786_D0) ] Succ: [] NODE_DESCR: AGCCACAGGT...CTTCCTGTGA:W5(V991_717_D4) Preds: [AGTCCACCAC...GGGAGCCACC:W6(V996_549_D3) ] Succ: [] combinePaths: [992, 993], [997, 984, 996] Examining imputation of path connecting pairpath: PairPath [_paths=[[992, 993], [997, 984, 996]]] nodes 993 to 997 Could Impute path connectingPairPath [_paths=[[992, 993], [997, 984, 996]]] containing intervening nodes: [994] we have 2 reads supporting the path: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] OK pp update to new DAG: PairPath [_paths=[[992, 993], [997, 984, 996]]] => PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] we have 6 reads supporting the path: PairPath [_paths=[[992, 993, 994, 997], []]] we have 2 reads supporting the path: PairPath [_paths=[[993, 994, 997], []]] we have 4 reads supporting the path: PairPath [_paths=[[996, 991], []]] we have 14 reads supporting the path: PairPath [_paths=[[996], []]] combinePaths: [997, 984], [996] Examining imputation of path connecting pairpath: PairPath [_paths=[[997, 984], [996]]] nodes 984 to 996 Could Impute path connectingPairPath [_paths=[[997, 984], [996]]] containing intervening nodes: [] we have 2 reads supporting the path: PairPath [_paths=[[997, 984, 996], []]] OK pp update to new DAG: PairPath [_paths=[[997, 984], [996]]] => PairPath [_paths=[[997, 984, 996], []]] we have 2 reads supporting the path: PairPath [_paths=[[997, 984], []]] we have 6 reads supporting the path: PairPath [_paths=[[997, 984, 996], []]] we have 2 reads supporting the path: PairPath [_paths=[[984, 996], []]] we have 2 reads supporting the path: PairPath [_paths=[[986, 997], []]] we have 2 reads supporting the path: PairPath [_paths=[[988, 989], []]] Start Vertex:992 PairPaths@AfterPairReorganization: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]]=2 PairPaths@AfterPairReorganization: PairPath [_paths=[[992, 993, 994, 997], []]]=6 Start Vertex:993 PairPaths@AfterPairReorganization: PairPath [_paths=[[993, 994, 997], []]]=2 Start Vertex:996 PairPaths@AfterPairReorganization: PairPath [_paths=[[996, 991], []]]=4 PairPaths@AfterPairReorganization: PairPath [_paths=[[996], []]]=14 Start Vertex:997 PairPaths@AfterPairReorganization: PairPath [_paths=[[997, 984], []]]=2 PairPaths@AfterPairReorganization: PairPath [_paths=[[997, 984, 996], []]]=6 Start Vertex:984 PairPaths@AfterPairReorganization: PairPath [_paths=[[984, 996], []]]=2 Start Vertex:986 PairPaths@AfterPairReorganization: PairPath [_paths=[[986, 997], []]]=2 Start Vertex:988 PairPaths@AfterPairReorganization: PairPath [_paths=[[988, 989], []]]=2 ComponentDivision: 0 contains the following vertices: node_id: 988 node_id: 989 ComponentDivision: 1 contains the following vertices: node_id: 992 node_id: 993 node_id: 994 node_id: 996 node_id: 997 node_id: 984 node_id: 986 node_id: 991 total number of components = 2 Searching for kmer set: TGGCTACAAACAGACTTCCTCAAG -> GGCTACAAACAGACTTCCTCAAGC Searching for kmer set: GCCAGCCCCGTGGAGGGAGCCACC -> CCAGCCCCGTGGAGGGAGCCACCA Searching for kmer set: CCTCATCAGCAAGAAGAAATCTTT -> CTCATCAGCAAGAAGAAATCTTTC Searching for kmer set: GAGCACTCTGAACCCTGTGAGGCA -> AGCACTCTGAACCCTGTGAGGCAA Searching for kmer set: GGAAGAAATCTTTCTTTCCAAGTA -> GAAGAAATCTTTCTTTCCAAGTAG Searching for kmer set: CCCAGCCCCGTGGAGGGAGCCACC -> CCAGCCCCGTGGAGGGAGCCACCA Searching for kmer set: AGAAGAAATCTTTCTTTCCAAGTA -> GAAGAAATCTTTCTTTCCAAGTAG Searching for kmer set: AGGAGCAGAGTTAGGAAGCTCCCT -> GGAGCAGAGTTAGGAAGCTCCCTG SECTION ============= Begin Assembly =============== Assembling subcomponent 0 Subcomponent: 0, adding pairpath: PairPath [_paths=[[988, 989], []]] #### Component Read Summary BEFORE PairPath-per-node Reduction ***** PairPath Counts ***** componentReadHash, start node: 988 has size: 1 Node: 988 has 1 pairpaths stored: PairPath [_paths=[[988, 989], []]] has read support: 2 ## Total number of pairpaths: 1 #### Component Read Summary AFTER PairPath-per-node Reduction ***** PairPath Counts ***** componentReadHash, start node: 988 has size: 1 Node: 988 has 1 pairpaths stored: PairPath [_paths=[[988, 989], []]] has read support: 2 ## Total number of pairpaths: 1 ### Extracting triplets from reads. ### 0 nodes have locked-in triplet paths: ### Extracting complex path prefixes from reads. -capturing path prefixes -removing prefixes that are subpaths of other prefixes #### Extended triplets from reads: Adding edge from S to AAACCCAGCCCCGTGGAGGGAGCCACC:W1(V988_786_D0) Adding edge from AGCCACAGGT...CTTCCTGTGA:W5(V989_717_D1) to T SECTION ############### ## Starting Butterfly Assembly ## ################### PairPaths to assemble: Start Vertex:-1 PairPaths@BflyStart: PairPath [_paths=[[-1, 988], []]]=1 Start Vertex:988 PairPaths@BflyStart: PairPath [_paths=[[988, 989], []]]=2 Start Vertex:989 PairPaths@BflyStart: PairPath [_paths=[[989, -2], []]]=1 QUEUE IS: [:W2147483647(V-1_D-1)] #### getAllProbablePaths() The next node in the queue C is -1 butterfly pct done: 1 / 2 = 50.0% pct done. ReadsStartingAtV_START_BFLY, Node: -1 read: PairPath [_paths=[[-1, 988], []]] Exploring extension of: 1 paths that end at vertex: -1 == Current Paths Constructed Up To Vertex: -1 : PathPartialReconstruction@[-1] : [-1] Adding the reads {PairPath [_paths=[[-1, 988], []]]=1} to the path [-1] ################################################ ###### Exploring extension of v: -1 by successor: 988 ################################################ Count of paths ending at v: -1 = 1 path_ending_at_v: [-1] # [PathCounter(988)=0 Examining potential extension of path ending at node V: -1 by successor: 988, via path=[-1] path [-1] is too short to check for triplet support. ReadsOfPathUntilV: PATH: [-1] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 988], []]] -checking if subPath has enough read support. Exploring sub path: [-1, 988] -readsOfPathUntilV: PairPath [_paths=[[-1, 988], []]] -checking if pp: PairPath [_paths=[[-1, 988], []]] supports extension of [-1, 988] => true examining subPath: [-1, 988] for reinforcement by read: [[-1, 988], []] :true the read PairPath [_paths=[[-1, 988], []]](1) enforces the sub-path ([-1, 988]) -found: 1 reads supporting subpath. the sub-path ([-1, 988]) has PASSED Successful extension of 988 to generate path [-1, 988] updateReadsOfPath: [-1, 988] read PairPath [_paths=[[-1, 988], []]] is consistent with 988 pct_contained_propagated: 0.0% 988 was added to the queue QUEUE IS: [AAACCCAGCCCCGTGGAGGGAGCCACC:W1(V988_786_D0)] #### getAllProbablePaths() The next node in the queue C is 988 butterfly pct done: 2 / 2 = 100.0% pct done. ReadsStartingAtV_START_BFLY, Node: 988 read: PairPath [_paths=[[988, 989], []]] Exploring extension of: 1 paths that end at vertex: 988 == Current Paths Constructed Up To Vertex: 988 : PathPartialReconstruction@[988] : [-1, 988] Adding the reads {PairPath [_paths=[[988, 989], []]]=2} to the path [-1, 988] ################################################ ###### Exploring extension of v: 988 by successor: 989 ################################################ Count of paths ending at v: 988 = 1 path_ending_at_v: [-1, 988] # [PathCounter(989)=0 Examining potential extension of path ending at node V: 988 by successor: 989, via path=[-1, 988] path [-1, 988] is too short to check for triplet support. ReadsOfPathUntilV: PATH: [-1, 988] ReadsOfPathUntiV: READ: PairPath [_paths=[[988, 989], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 988], []]] -checking if subPath has enough read support. Exploring sub path: [-1, 988, 989] -readsOfPathUntilV: PairPath [_paths=[[988, 989], []]] -checking if pp: PairPath [_paths=[[988, 989], []]] supports extension of [-1, 988, 989] => true examining subPath: [-1, 988, 989] for reinforcement by read: [[988, 989], []] :true the read PairPath [_paths=[[988, 989], []]](2) enforces the sub-path ([-1, 988, 989]) -found: 2 reads supporting subpath. the sub-path ([-1, 988, 989]) has PASSED Successful extension of 989 to generate path [-1, 988, 989] updateReadsOfPath: [-1, 988, 989] read PairPath [_paths=[[988, 989], []]] is consistent with 989 pct_contained_propagated: 50.0% 989 was added to the queue QUEUE IS: [AGCCACAGGT...CTTCCTGTGA:W5(V989_717_D1)] #### getAllProbablePaths() The next node in the queue C is 989 butterfly pct done: 3 / 2 = 150.0% pct done. ReadsStartingAtV_START_BFLY, Node: 989 read: PairPath [_paths=[[989, -2], []]] Exploring extension of: 1 paths that end at vertex: 989 == Current Paths Constructed Up To Vertex: 989 : PathPartialReconstruction@[989] : [-1, 988, 989] Adding the reads {PairPath [_paths=[[989, -2], []]]=1} to the path [-1, 988, 989] ################################################ ###### Exploring extension of v: 989 by successor: -2 ################################################ Count of paths ending at v: 989 = 1 path_ending_at_v: [-1, 988, 989] # [PathCounter(-2)=0 Examining potential extension of path ending at node V: 989 by successor: -2, via path=[-1, 988, 989] TripletMapper doesnt contain node: 989 ReadsOfPathUntilV: PATH: [-1, 988, 989] ReadsOfPathUntiV: READ: PairPath [_paths=[[988, 989], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[989, -2], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 988], []]] -checking if subPath has enough read support. Exploring sub path: [-1, 988, 989, -2] -readsOfPathUntilV: PairPath [_paths=[[988, 989], []]] -checking if pp: PairPath [_paths=[[988, 989], []]] supports extension of [-1, 988, 989, -2] => false examining subPath: [-1, 988, 989, -2] for reinforcement by read: [[988, 989], []] :false the read PairPath [_paths=[[988, 989], []]](2) does not enforce the sub-path ([-1, 988, 989, -2]) -readsOfPathUntilV: PairPath [_paths=[[989, -2], []]] -checking if pp: PairPath [_paths=[[989, -2], []]] supports extension of [-1, 988, 989, -2] => false examining subPath: [-1, 988, 989, -2] for reinforcement by read: [[989, -2], []] :false the read PairPath [_paths=[[989, -2], []]](1) does not enforce the sub-path ([-1, 988, 989, -2]) -readsOfPathUntilV: PairPath [_paths=[[-1, 988], []]] -checking if pp: PairPath [_paths=[[-1, 988], []]] supports extension of [-1, 988, 989, -2] => false examining subPath: [-1, 988, 989, -2] for reinforcement by read: [[-1, 988], []] :false the read PairPath [_paths=[[-1, 988], []]](1) does not enforce the sub-path ([-1, 988, 989, -2]) -found: 0 reads supporting subpath. the sub-path ([-1, 988, 989, -2]) has NOT PASSED Successful extension of -2 to generate path [-1, 988, 989, -2] updateReadsOfPath: [-1, 988, 989, -2] read PairPath [_paths=[[989, -2], []]] is consistent with -2 pct_contained_propagated: 66.66667% -2 was added to the queue QUEUE IS: [:W-1(V-2_D-1)] #### getAllProbablePaths() The next node in the queue C is -2 butterfly pct done: 4 / 2 = 200.0% pct done. ReadsStartingAtV_START_BFLY-2 EMPTY Exploring extension of: 1 paths that end at vertex: -2 == Current Paths Constructed Up To Vertex: -2 : PathPartialReconstruction@[-2] : [-1, 988, 989, -2] sequence for path: [-1, 988, 989, -2] is too short: 92 No paths to pursue. Continue... SECTION ============= Begin Assembly =============== Assembling subcomponent 1 Subcomponent: 1, adding pairpath: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] Subcomponent: 1, adding pairpath: PairPath [_paths=[[992, 993, 994, 997], []]] Subcomponent: 1, adding pairpath: PairPath [_paths=[[993, 994, 997], []]] Subcomponent: 1, adding pairpath: PairPath [_paths=[[996, 991], []]] Subcomponent: 1, adding pairpath: PairPath [_paths=[[996], []]] Subcomponent: 1, adding pairpath: PairPath [_paths=[[997, 984], []]] Subcomponent: 1, adding pairpath: PairPath [_paths=[[997, 984, 996], []]] Subcomponent: 1, adding pairpath: PairPath [_paths=[[984, 996], []]] Subcomponent: 1, adding pairpath: PairPath [_paths=[[986, 997], []]] #### Component Read Summary BEFORE PairPath-per-node Reduction ***** PairPath Counts ***** componentReadHash, start node: 992 has size: 2 Node: 992 has 2 pairpaths stored: PairPath [_paths=[[992, 993, 994, 997], []]] has read support: 6 PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] has read support: 2 componentReadHash, start node: 993 has size: 1 Node: 993 has 1 pairpaths stored: PairPath [_paths=[[993, 994, 997], []]] has read support: 2 componentReadHash, start node: 996 has size: 2 Node: 996 has 2 pairpaths stored: PairPath [_paths=[[996], []]] has read support: 14 PairPath [_paths=[[996, 991], []]] has read support: 4 componentReadHash, start node: 997 has size: 2 Node: 997 has 2 pairpaths stored: PairPath [_paths=[[997, 984, 996], []]] has read support: 6 PairPath [_paths=[[997, 984], []]] has read support: 2 componentReadHash, start node: 984 has size: 1 Node: 984 has 1 pairpaths stored: PairPath [_paths=[[984, 996], []]] has read support: 2 componentReadHash, start node: 986 has size: 1 Node: 986 has 1 pairpaths stored: PairPath [_paths=[[986, 997], []]] has read support: 2 ## Total number of pairpaths: 9 #### Component Read Summary AFTER PairPath-per-node Reduction ***** PairPath Counts ***** componentReadHash, start node: 992 has size: 2 Node: 992 has 2 pairpaths stored: PairPath [_paths=[[992, 993, 994, 997], []]] has read support: 6 PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] has read support: 2 componentReadHash, start node: 993 has size: 1 Node: 993 has 1 pairpaths stored: PairPath [_paths=[[993, 994, 997], []]] has read support: 2 componentReadHash, start node: 996 has size: 2 Node: 996 has 2 pairpaths stored: PairPath [_paths=[[996], []]] has read support: 14 PairPath [_paths=[[996, 991], []]] has read support: 4 componentReadHash, start node: 997 has size: 2 Node: 997 has 2 pairpaths stored: PairPath [_paths=[[997, 984, 996], []]] has read support: 6 PairPath [_paths=[[997, 984], []]] has read support: 2 componentReadHash, start node: 984 has size: 1 Node: 984 has 1 pairpaths stored: PairPath [_paths=[[984, 996], []]] has read support: 2 componentReadHash, start node: 986 has size: 1 Node: 986 has 1 pairpaths stored: PairPath [_paths=[[986, 997], []]] has read support: 2 ## Total number of pairpaths: 9 ### Extracting triplets from reads. Setting initial triplet adjacency_path for central node: 993 => [992, 993, 994] Setting initial triplet adjacency_path for central node: 994 => [993, 994, 997] Setting initial triplet adjacency_path for central node: 997 => [994, 997, 984] Setting initial triplet adjacency_path for central node: 984 => [997, 984, 996] triplet adjacency_path of node: 993 => [992, 993, 994] already captured. triplet adjacency_path of node: 994 => [993, 994, 997] already captured. triplet adjacency_path of node: 994 => [993, 994, 997] already captured. triplet adjacency_path of node: 984 => [997, 984, 996] already captured. ### 4 nodes have locked-in triplet paths: Triplet locks for: 993 : [[992, 993, 994]] Triplet locks for: 994 : [[993, 994, 997]] Triplet locks for: 997 : [[994, 997, 984]] Triplet locks for: 984 : [[997, 984, 996]] ### Extracting complex path prefixes from reads. -capturing path prefixes -removing prefixes that are subpaths of other prefixes EXTENDED_TRIPLET_CAPTURED: [992, 993, 994] EXTENDED_TRIPLET_CAPTURED: [992, 993, 994, 997, 984, 996] EXTENDED_TRIPLET_CAPTURED: [992, 993, 994, 997] EXTENDED_TRIPLET_CAPTURED: [993, 994, 997] EXTENDED_TRIPLET_CAPTURED: [992, 993, 994, 997, 984] #### Extended triplets from reads: Complex prefix paths for: 994 : [[992, 993, 994]] Complex prefix paths for: 996 : [[992, 993, 994, 997, 984, 996]] Complex prefix paths for: 997 : [[992, 993, 994, 997], [993, 994, 997]] Complex prefix paths for: 984 : [[992, 993, 994, 997, 984]] Adding edge from S to CCACATTTCT...CTTCCTCAAG:W2(V992_380_D0) Adding edge from S to GCCTCATCAG...TTTCCAAGTA:W1(V986_945_D0) Adding edge from AGCCACAGGT...CTTCCTGTGA:W5(V991_717_D4) to T SECTION ############### ## Starting Butterfly Assembly ## ################### PairPaths to assemble: Start Vertex:992 PairPaths@BflyStart: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]]=2 PairPaths@BflyStart: PairPath [_paths=[[992, 993, 994, 997], []]]=6 Start Vertex:-1 PairPaths@BflyStart: PairPath [_paths=[[-1, 986], []]]=1 PairPaths@BflyStart: PairPath [_paths=[[-1, 992], []]]=1 Start Vertex:993 PairPaths@BflyStart: PairPath [_paths=[[993, 994, 997], []]]=2 Start Vertex:996 PairPaths@BflyStart: PairPath [_paths=[[996, 991], []]]=4 PairPaths@BflyStart: PairPath [_paths=[[996], []]]=14 Start Vertex:997 PairPaths@BflyStart: PairPath [_paths=[[997, 984], []]]=2 PairPaths@BflyStart: PairPath [_paths=[[997, 984, 996], []]]=6 Start Vertex:984 PairPaths@BflyStart: PairPath [_paths=[[984, 996], []]]=2 Start Vertex:986 PairPaths@BflyStart: PairPath [_paths=[[986, 997], []]]=2 Start Vertex:991 PairPaths@BflyStart: PairPath [_paths=[[991, -2], []]]=1 QUEUE IS: [:W2147483647(V-1_D-1)] #### getAllProbablePaths() The next node in the queue C is -1 butterfly pct done: 1 / 8 = 12.5% pct done. ReadsStartingAtV_START_BFLY, Node: -1 read: PairPath [_paths=[[-1, 986], []]] ReadsStartingAtV_START_BFLY, Node: -1 read: PairPath [_paths=[[-1, 992], []]] Exploring extension of: 1 paths that end at vertex: -1 == Current Paths Constructed Up To Vertex: -1 : PathPartialReconstruction@[-1] : [-1] Adding the reads {PairPath [_paths=[[-1, 986], []]]=1, PairPath [_paths=[[-1, 992], []]]=1} to the path [-1] ################################################ ###### Exploring extension of v: -1 by successor: 992 ################################################ Count of paths ending at v: -1 = 1 path_ending_at_v: [-1] # [PathCounter(992)=0 Examining potential extension of path ending at node V: -1 by successor: 992, via path=[-1] path [-1] is too short to check for triplet support. ReadsOfPathUntilV: PATH: [-1] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 986], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 992], []]] -checking if subPath has enough read support. Exploring sub path: [-1, 992] -readsOfPathUntilV: PairPath [_paths=[[-1, 986], []]] -checking if pp: PairPath [_paths=[[-1, 986], []]] supports extension of [-1, 992] => false examining subPath: [-1, 992] for reinforcement by read: [[-1, 986], []] :false the read PairPath [_paths=[[-1, 986], []]](1) does not enforce the sub-path ([-1, 992]) -readsOfPathUntilV: PairPath [_paths=[[-1, 992], []]] -checking if pp: PairPath [_paths=[[-1, 992], []]] supports extension of [-1, 992] => true examining subPath: [-1, 992] for reinforcement by read: [[-1, 992], []] :true the read PairPath [_paths=[[-1, 992], []]](1) enforces the sub-path ([-1, 992]) -found: 1 reads supporting subpath. the sub-path ([-1, 992]) has PASSED Successful extension of 992 to generate path [-1, 992] updateReadsOfPath: [-1, 992] read PairPath [_paths=[[-1, 986], []]] is not consistent with 992 read PairPath [_paths=[[-1, 992], []]] is consistent with 992 pct_contained_propagated: 0.0% 992 was added to the queue ################################################ ###### Exploring extension of v: -1 by successor: 986 ################################################ Count of paths ending at v: -1 = 1 path_ending_at_v: [-1] # [PathCounter(986)=0 Examining potential extension of path ending at node V: -1 by successor: 986, via path=[-1] path [-1] is too short to check for triplet support. ReadsOfPathUntilV: PATH: [-1] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 986], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 992], []]] -checking if subPath has enough read support. Exploring sub path: [-1, 986] -readsOfPathUntilV: PairPath [_paths=[[-1, 986], []]] -checking if pp: PairPath [_paths=[[-1, 986], []]] supports extension of [-1, 986] => true examining subPath: [-1, 986] for reinforcement by read: [[-1, 986], []] :true the read PairPath [_paths=[[-1, 986], []]](1) enforces the sub-path ([-1, 986]) -found: 1 reads supporting subpath. the sub-path ([-1, 986]) has PASSED Successful extension of 986 to generate path [-1, 986] updateReadsOfPath: [-1, 986] read PairPath [_paths=[[-1, 986], []]] is consistent with 986 read PairPath [_paths=[[-1, 992], []]] is not consistent with 986 pct_contained_propagated: 0.0% 986 was added to the queue ################################################ ###### Exploring extension of v: -1 by successor: 988 ################################################ component either lacks: 988 or at sink QUEUE IS: [CCACATTTCT...CTTCCTCAAG:W2(V992_380_D0), GCCTCATCAG...TTTCCAAGTA:W1(V986_945_D0)] #### getAllProbablePaths() The next node in the queue C is 992 butterfly pct done: 2 / 8 = 25.0% pct done. ReadsStartingAtV_START_BFLY, Node: 992 read: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] ReadsStartingAtV_START_BFLY, Node: 992 read: PairPath [_paths=[[992, 993, 994, 997], []]] Exploring extension of: 1 paths that end at vertex: 992 == Current Paths Constructed Up To Vertex: 992 : PathPartialReconstruction@[992] : [-1, 992] Adding the reads {PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]]=2, PairPath [_paths=[[992, 993, 994, 997], []]]=6} to the path [-1, 992] ################################################ ###### Exploring extension of v: 992 by successor: 993 ################################################ Count of paths ending at v: 992 = 1 path_ending_at_v: [-1, 992] # [PathCounter(993)=0 Examining potential extension of path ending at node V: 992 by successor: 993, via path=[-1, 992] path [-1, 992] is too short to check for triplet support. ReadsOfPathUntilV: PATH: [-1, 992] ReadsOfPathUntiV: READ: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[992, 993, 994, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 992], []]] -checking if subPath has enough read support. Exploring sub path: [-1, 992, 993] -readsOfPathUntilV: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] -checking if pp: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] supports extension of [-1, 992, 993] => true examining subPath: [-1, 992, 993] for reinforcement by read: [[992, 993, 994, 997, 984, 996], []] :true the read PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]](2) enforces the sub-path ([-1, 992, 993]) -found: 2 reads supporting subpath. the sub-path ([-1, 992, 993]) has PASSED Successful extension of 993 to generate path [-1, 992, 993] updateReadsOfPath: [-1, 992, 993] read PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] is consistent with 993 read PairPath [_paths=[[992, 993, 994, 997], []]] is consistent with 993 pct_contained_propagated: 33.333336% 993 was added to the queue QUEUE IS: [GCCTCATCAG...TTTCCAAGTA:W1(V986_945_D0), CCTCATCAGCAAGAAGAAATCTTT:W7(V993_982_D1)] #### getAllProbablePaths() The next node in the queue C is 986 butterfly pct done: 3 / 8 = 37.5% pct done. ReadsStartingAtV_START_BFLY, Node: 986 read: PairPath [_paths=[[986, 997], []]] Exploring extension of: 1 paths that end at vertex: 986 == Current Paths Constructed Up To Vertex: 986 : PathPartialReconstruction@[986] : [-1, 986] Adding the reads {PairPath [_paths=[[986, 997], []]]=2} to the path [-1, 986] ################################################ ###### Exploring extension of v: 986 by successor: 997 ################################################ Count of paths ending at v: 986 = 1 path_ending_at_v: [-1, 986] # [PathCounter(997)=0 Examining potential extension of path ending at node V: 986 by successor: 997, via path=[-1, 986] path [-1, 986] is too short to check for triplet support. ReadsOfPathUntilV: PATH: [-1, 986] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 986], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[986, 997], []]] -checking if subPath has enough read support. Exploring sub path: [986, 997] -readsOfPathUntilV: PairPath [_paths=[[-1, 986], []]] -checking if pp: PairPath [_paths=[[-1, 986], []]] supports extension of [-1, 986, 997] => false examining subPath: [986, 997] for reinforcement by read: [[-1, 986], []] :false the read PairPath [_paths=[[-1, 986], []]](1) does not enforce the sub-path ([986, 997]) -readsOfPathUntilV: PairPath [_paths=[[986, 997], []]] -checking if pp: PairPath [_paths=[[986, 997], []]] supports extension of [-1, 986, 997] => true examining subPath: [986, 997] for reinforcement by read: [[986, 997], []] :true the read PairPath [_paths=[[986, 997], []]](2) enforces the sub-path ([986, 997]) -found: 2 reads supporting subpath. the sub-path ([986, 997]) has PASSED Successful extension of 997 to generate path [-1, 986, 997] updateReadsOfPath: [-1, 986, 997] read PairPath [_paths=[[986, 997], []]] is consistent with 997 pct_contained_propagated: 50.0% 997 was added to the queue QUEUE IS: [CCTCATCAGCAAGAAGAAATCTTT:W7(V993_982_D1), GTGTCTTAAC...GAAGCTCCCT:W6(V997_451_D1)] #### getAllProbablePaths() The next node in the queue C is 993 butterfly pct done: 4 / 8 = 50.0% pct done. ReadsStartingAtV_START_BFLY, Node: 993 read: PairPath [_paths=[[993, 994, 997], []]] Exploring extension of: 1 paths that end at vertex: 993 == Current Paths Constructed Up To Vertex: 993 : PathPartialReconstruction@[993] : [-1, 992, 993] Adding the reads {PairPath [_paths=[[993, 994, 997], []]]=2} to the path [-1, 992, 993] ################################################ ###### Exploring extension of v: 993 by successor: 994 ################################################ Count of paths ending at v: 993 = 1 path_ending_at_v: [-1, 992, 993] # [PathCounter(994)=0 Examining potential extension of path ending at node V: 993 by successor: 994, via path=[-1, 992, 993] TripletMapper doesnt contain node: 993 ReadsOfPathUntilV: PATH: [-1, 992, 993] ReadsOfPathUntiV: READ: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[992, 993, 994, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[993, 994, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 992], []]] -checking if subPath has enough read support. Exploring sub path: [-1, 992, 993, 994] -readsOfPathUntilV: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] -checking if pp: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] supports extension of [-1, 992, 993, 994] => true examining subPath: [-1, 992, 993, 994] for reinforcement by read: [[992, 993, 994, 997, 984, 996], []] :true the read PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]](2) enforces the sub-path ([-1, 992, 993, 994]) -found: 2 reads supporting subpath. the sub-path ([-1, 992, 993, 994]) has PASSED Successful extension of 994 to generate path [-1, 992, 993, 994] updateReadsOfPath: [-1, 992, 993, 994] read PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] is consistent with 994 read PairPath [_paths=[[992, 993, 994, 997], []]] is consistent with 994 read PairPath [_paths=[[993, 994, 997], []]] is consistent with 994 pct_contained_propagated: 25.0% 994 was added to the queue QUEUE IS: [GTGTCTTAAC...GAAGCTCCCT:W6(V997_451_D1), CTTTCCAAGTA:W8(V994_440_D2)] * delaying tackling vertex: 997 since a parent hasn't been visited yet. #### getAllProbablePaths() The next node in the queue C is 994 butterfly pct done: 5 / 8 = 62.5% pct done. ReadsStartingAtV_START_BFLY994 EMPTY Exploring extension of: 1 paths that end at vertex: 994 == Current Paths Constructed Up To Vertex: 994 : PathPartialReconstruction@[994] : [-1, 992, 993, 994] ################################################ ###### Exploring extension of v: 994 by successor: 997 ################################################ Count of paths ending at v: 994 = 1 path_ending_at_v: [-1, 992, 993, 994] # [PathCounter(997)=0 Examining potential extension of path ending at node V: 994 by successor: 997, via path=[-1, 992, 993, 994] TripletMapper doesnt contain node: 994 ReadsOfPathUntilV: PATH: [-1, 992, 993, 994] ReadsOfPathUntiV: READ: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[992, 993, 994, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[993, 994, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 992], []]] -checking if subPath has enough read support. Exploring sub path: [994, 997] -readsOfPathUntilV: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] -checking if pp: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] supports extension of [-1, 992, 993, 994, 997] => true examining subPath: [994, 997] for reinforcement by read: [[992, 993, 994, 997, 984, 996], []] :true the read PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]](2) enforces the sub-path ([994, 997]) -found: 2 reads supporting subpath. the sub-path ([994, 997]) has PASSED Successful extension of 997 to generate path [-1, 992, 993, 994, 997] updateReadsOfPath: [-1, 992, 993, 994, 997] read PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] is consistent with 997 read PairPath [_paths=[[992, 993, 994, 997], []]] is consistent with 997 read PairPath [_paths=[[993, 994, 997], []]] is consistent with 997 pct_contained_propagated: 25.0% QUEUE IS: [GTGTCTTAAC...GAAGCTCCCT:W6(V997_451_D1)] #### getAllProbablePaths() The next node in the queue C is 997 butterfly pct done: 6 / 8 = 75.0% pct done. ReadsStartingAtV_START_BFLY, Node: 997 read: PairPath [_paths=[[997, 984], []]] ReadsStartingAtV_START_BFLY, Node: 997 read: PairPath [_paths=[[997, 984, 996], []]] Exploring extension of: 2 paths that end at vertex: 997 == Current Paths Constructed Up To Vertex: 997 : PathPartialReconstruction@[997] : [-1, 986, 997] PathPartialReconstruction@[997] : [-1, 992, 993, 994, 997] Adding the reads {PairPath [_paths=[[997, 984], []]]=2, PairPath [_paths=[[997, 984, 996], []]]=6} to the path [-1, 986, 997] Adding the reads {PairPath [_paths=[[997, 984], []]]=2, PairPath [_paths=[[997, 984, 996], []]]=6} to the path [-1, 992, 993, 994, 997] ################################################ ###### Exploring extension of v: 997 by successor: 984 ################################################ Count of paths ending at v: 997 = 2 path_ending_at_v: [-1, 992, 993, 994, 997] path_ending_at_v: [-1, 986, 997] # [PathCounter(984)=0 Examining potential extension of path ending at node V: 997 by successor: 984, via path=[-1, 992, 993, 994, 997] TripletMapper doesnt contain node: 997 ReadsOfPathUntilV: PATH: [-1, 992, 993, 994, 997] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[992, 993, 994, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[993, 994, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 992], []]] -checking if subPath has enough read support. Exploring sub path: [997, 984] -readsOfPathUntilV: PairPath [_paths=[[997, 984], []]] -checking if pp: PairPath [_paths=[[997, 984], []]] supports extension of [-1, 992, 993, 994, 997, 984] => true examining subPath: [997, 984] for reinforcement by read: [[997, 984], []] :true the read PairPath [_paths=[[997, 984], []]](2) enforces the sub-path ([997, 984]) -found: 2 reads supporting subpath. the sub-path ([997, 984]) has PASSED Successful extension of 984 to generate path [-1, 992, 993, 994, 997, 984] updateReadsOfPath: [-1, 992, 993, 994, 997, 984] read PairPath [_paths=[[997, 984], []]] is consistent with 984 read PairPath [_paths=[[997, 984, 996], []]] is consistent with 984 read PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] is consistent with 984 pct_contained_propagated: 50.0% # [PathCounter(984)=1 Examining potential extension of path ending at node V: 997 by successor: 984, via path=[-1, 986, 997] TripletMapper doesnt contain node: 997 ReadsOfPathUntilV: PATH: [-1, 986, 997] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 986], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[986, 997], []]] -checking if subPath has enough read support. Exploring sub path: [997, 984] -readsOfPathUntilV: PairPath [_paths=[[997, 984], []]] -checking if pp: PairPath [_paths=[[997, 984], []]] supports extension of [-1, 986, 997, 984] => true examining subPath: [997, 984] for reinforcement by read: [[997, 984], []] :true the read PairPath [_paths=[[997, 984], []]](2) enforces the sub-path ([997, 984]) -found: 2 reads supporting subpath. the sub-path ([997, 984]) has PASSED Successful extension of 984 to generate path [-1, 986, 997, 984] updateReadsOfPath: [-1, 986, 997, 984] read PairPath [_paths=[[997, 984], []]] is consistent with 984 read PairPath [_paths=[[997, 984, 996], []]] is consistent with 984 pct_contained_propagated: 50.0% 984 was added to the queue QUEUE IS: [GAGCACTCTGAACCCTGTGAGGCA:W6(V984_981_D2)] #### getAllProbablePaths() The next node in the queue C is 984 butterfly pct done: 7 / 8 = 87.5% pct done. ReadsStartingAtV_START_BFLY, Node: 984 read: PairPath [_paths=[[984, 996], []]] Exploring extension of: 2 paths that end at vertex: 984 == Current Paths Constructed Up To Vertex: 984 : PathPartialReconstruction@[984] : [-1, 992, 993, 994, 997, 984] PathPartialReconstruction@[984] : [-1, 986, 997, 984] Adding the reads {PairPath [_paths=[[984, 996], []]]=2} to the path [-1, 992, 993, 994, 997, 984] Adding the reads {PairPath [_paths=[[984, 996], []]]=2} to the path [-1, 986, 997, 984] ################################################ ###### Exploring extension of v: 984 by successor: 996 ################################################ Count of paths ending at v: 984 = 2 path_ending_at_v: [-1, 992, 993, 994, 997, 984] path_ending_at_v: [-1, 986, 997, 984] # [PathCounter(996)=0 Examining potential extension of path ending at node V: 984 by successor: 996, via path=[-1, 992, 993, 994, 997, 984] TripletMapper doesnt contain node: 984 ReadsOfPathUntilV: PATH: [-1, 992, 993, 994, 997, 984] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[992, 993, 994, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[993, 994, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 992], []]] -checking if subPath has enough read support. Exploring sub path: [996] -readsOfPathUntilV: PairPath [_paths=[[997, 984], []]] -checking if pp: PairPath [_paths=[[997, 984], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996] => false examining subPath: [996] for reinforcement by read: [[997, 984], []] :false the read PairPath [_paths=[[997, 984], []]](2) does not enforce the sub-path ([996]) -readsOfPathUntilV: PairPath [_paths=[[997, 984, 996], []]] -checking if pp: PairPath [_paths=[[997, 984, 996], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996] => true examining subPath: [996] for reinforcement by read: [[997, 984, 996], []] :true the read PairPath [_paths=[[997, 984, 996], []]](6) enforces the sub-path ([996]) -found: 6 reads supporting subpath. the sub-path ([996]) has PASSED Successful extension of 996 to generate path [-1, 992, 993, 994, 997, 984, 996] updateReadsOfPath: [-1, 992, 993, 994, 997, 984, 996] read PairPath [_paths=[[997, 984, 996], []]] is consistent with 996 read PairPath [_paths=[[984, 996], []]] is consistent with 996 read PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] is consistent with 996 pct_contained_propagated: 57.14286% # [PathCounter(996)=1 Examining potential extension of path ending at node V: 984 by successor: 996, via path=[-1, 986, 997, 984] TripletMapper doesnt contain node: 984 ReadsOfPathUntilV: PATH: [-1, 986, 997, 984] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 986], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[986, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[984, 996], []]] -checking if subPath has enough read support. Exploring sub path: [996] -readsOfPathUntilV: PairPath [_paths=[[997, 984], []]] -checking if pp: PairPath [_paths=[[997, 984], []]] supports extension of [-1, 986, 997, 984, 996] => false examining subPath: [996] for reinforcement by read: [[997, 984], []] :false the read PairPath [_paths=[[997, 984], []]](2) does not enforce the sub-path ([996]) -readsOfPathUntilV: PairPath [_paths=[[997, 984, 996], []]] -checking if pp: PairPath [_paths=[[997, 984, 996], []]] supports extension of [-1, 986, 997, 984, 996] => true examining subPath: [996] for reinforcement by read: [[997, 984, 996], []] :true the read PairPath [_paths=[[997, 984, 996], []]](6) enforces the sub-path ([996]) -found: 6 reads supporting subpath. the sub-path ([996]) has PASSED Successful extension of 996 to generate path [-1, 986, 997, 984, 996] updateReadsOfPath: [-1, 986, 997, 984, 996] read PairPath [_paths=[[997, 984, 996], []]] is consistent with 996 read PairPath [_paths=[[984, 996], []]] is consistent with 996 pct_contained_propagated: 60.000004% 996 was added to the queue QUEUE IS: [AGTCCACCAC...GGGAGCCACC:W6(V996_549_D3)] #### getAllProbablePaths() The next node in the queue C is 996 butterfly pct done: 8 / 8 = 100.0% pct done. ReadsStartingAtV_START_BFLY, Node: 996 read: PairPath [_paths=[[996, 991], []]] ReadsStartingAtV_START_BFLY, Node: 996 read: PairPath [_paths=[[996], []]] Exploring extension of: 2 paths that end at vertex: 996 == Current Paths Constructed Up To Vertex: 996 : PathPartialReconstruction@[996] : [-1, 992, 993, 994, 997, 984, 996] PathPartialReconstruction@[996] : [-1, 986, 997, 984, 996] Adding the reads {PairPath [_paths=[[996, 991], []]]=4, PairPath [_paths=[[996], []]]=14} to the path [-1, 992, 993, 994, 997, 984, 996] Adding the reads {PairPath [_paths=[[996, 991], []]]=4, PairPath [_paths=[[996], []]]=14} to the path [-1, 986, 997, 984, 996] ################################################ ###### Exploring extension of v: 996 by successor: 991 ################################################ Count of paths ending at v: 996 = 2 path_ending_at_v: [-1, 992, 993, 994, 997, 984, 996] path_ending_at_v: [-1, 986, 997, 984, 996] # [PathCounter(991)=0 Examining potential extension of path ending at node V: 996 by successor: 991, via path=[-1, 992, 993, 994, 997, 984, 996] TripletMapper doesnt contain node: 996 ReadsOfPathUntilV: PATH: [-1, 992, 993, 994, 997, 984, 996] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[996, 991], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[992, 993, 994, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[993, 994, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 992], []]] -checking if subPath has enough read support. Exploring sub path: [996, 991] -readsOfPathUntilV: PairPath [_paths=[[997, 984], []]] -checking if pp: PairPath [_paths=[[997, 984], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996, 991] => false examining subPath: [996, 991] for reinforcement by read: [[997, 984], []] :false the read PairPath [_paths=[[997, 984], []]](2) does not enforce the sub-path ([996, 991]) -readsOfPathUntilV: PairPath [_paths=[[997, 984, 996], []]] -checking if pp: PairPath [_paths=[[997, 984, 996], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996, 991] => false examining subPath: [996, 991] for reinforcement by read: [[997, 984, 996], []] :false the read PairPath [_paths=[[997, 984, 996], []]](6) does not enforce the sub-path ([996, 991]) -readsOfPathUntilV: PairPath [_paths=[[996, 991], []]] -checking if pp: PairPath [_paths=[[996, 991], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996, 991] => true examining subPath: [996, 991] for reinforcement by read: [[996, 991], []] :true the read PairPath [_paths=[[996, 991], []]](4) enforces the sub-path ([996, 991]) -found: 4 reads supporting subpath. the sub-path ([996, 991]) has PASSED Successful extension of 991 to generate path [-1, 992, 993, 994, 997, 984, 996, 991] updateReadsOfPath: [-1, 992, 993, 994, 997, 984, 996, 991] read PairPath [_paths=[[996, 991], []]] is consistent with 991 read PairPath [_paths=[[996], []]] is consistent with 991 pct_contained_propagated: 77.77778% # [PathCounter(991)=1 Examining potential extension of path ending at node V: 996 by successor: 991, via path=[-1, 986, 997, 984, 996] TripletMapper doesnt contain node: 996 ReadsOfPathUntilV: PATH: [-1, 986, 997, 984, 996] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 986], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[986, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[996, 991], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[996], []]] -checking if subPath has enough read support. Exploring sub path: [996, 991] -readsOfPathUntilV: PairPath [_paths=[[997, 984], []]] -checking if pp: PairPath [_paths=[[997, 984], []]] supports extension of [-1, 986, 997, 984, 996, 991] => false examining subPath: [996, 991] for reinforcement by read: [[997, 984], []] :false the read PairPath [_paths=[[997, 984], []]](2) does not enforce the sub-path ([996, 991]) -readsOfPathUntilV: PairPath [_paths=[[997, 984, 996], []]] -checking if pp: PairPath [_paths=[[997, 984, 996], []]] supports extension of [-1, 986, 997, 984, 996, 991] => false examining subPath: [996, 991] for reinforcement by read: [[997, 984, 996], []] :false the read PairPath [_paths=[[997, 984, 996], []]](6) does not enforce the sub-path ([996, 991]) -readsOfPathUntilV: PairPath [_paths=[[-1, 986], []]] -checking if pp: PairPath [_paths=[[-1, 986], []]] supports extension of [-1, 986, 997, 984, 996, 991] => false examining subPath: [996, 991] for reinforcement by read: [[-1, 986], []] :false the read PairPath [_paths=[[-1, 986], []]](1) does not enforce the sub-path ([996, 991]) -readsOfPathUntilV: PairPath [_paths=[[986, 997], []]] -checking if pp: PairPath [_paths=[[986, 997], []]] supports extension of [-1, 986, 997, 984, 996, 991] => false examining subPath: [996, 991] for reinforcement by read: [[986, 997], []] :false the read PairPath [_paths=[[986, 997], []]](2) does not enforce the sub-path ([996, 991]) -readsOfPathUntilV: PairPath [_paths=[[996, 991], []]] -checking if pp: PairPath [_paths=[[996, 991], []]] supports extension of [-1, 986, 997, 984, 996, 991] => true examining subPath: [996, 991] for reinforcement by read: [[996, 991], []] :true the read PairPath [_paths=[[996, 991], []]](4) enforces the sub-path ([996, 991]) -found: 4 reads supporting subpath. the sub-path ([996, 991]) has PASSED Successful extension of 991 to generate path [-1, 986, 997, 984, 996, 991] updateReadsOfPath: [-1, 986, 997, 984, 996, 991] read PairPath [_paths=[[996, 991], []]] is consistent with 991 read PairPath [_paths=[[996], []]] is consistent with 991 pct_contained_propagated: 71.42857% 991 was added to the queue QUEUE IS: [AGCCACAGGT...CTTCCTGTGA:W5(V991_717_D4)] #### getAllProbablePaths() The next node in the queue C is 991 butterfly pct done: 9 / 8 = 112.5% pct done. ReadsStartingAtV_START_BFLY, Node: 991 read: PairPath [_paths=[[991, -2], []]] Exploring extension of: 2 paths that end at vertex: 991 == Current Paths Constructed Up To Vertex: 991 : PathPartialReconstruction@[991] : [-1, 992, 993, 994, 997, 984, 996, 991] PathPartialReconstruction@[991] : [-1, 986, 997, 984, 996, 991] Adding the reads {PairPath [_paths=[[991, -2], []]]=1} to the path [-1, 992, 993, 994, 997, 984, 996, 991] Adding the reads {PairPath [_paths=[[991, -2], []]]=1} to the path [-1, 986, 997, 984, 996, 991] ################################################ ###### Exploring extension of v: 991 by successor: -2 ################################################ Count of paths ending at v: 991 = 2 path_ending_at_v: [-1, 992, 993, 994, 997, 984, 996, 991] path_ending_at_v: [-1, 986, 997, 984, 996, 991] # [PathCounter(-2)=0 Examining potential extension of path ending at node V: 991 by successor: -2, via path=[-1, 992, 993, 994, 997, 984, 996, 991] TripletMapper doesnt contain node: 991 ReadsOfPathUntilV: PATH: [-1, 992, 993, 994, 997, 984, 996, 991] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[996, 991], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[992, 993, 994, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[993, 994, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[991, -2], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 992], []]] -checking if subPath has enough read support. Exploring sub path: [996, 991, -2] -readsOfPathUntilV: PairPath [_paths=[[997, 984], []]] -checking if pp: PairPath [_paths=[[997, 984], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[997, 984], []] :false the read PairPath [_paths=[[997, 984], []]](2) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[997, 984, 996], []]] -checking if pp: PairPath [_paths=[[997, 984, 996], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[997, 984, 996], []] :false the read PairPath [_paths=[[997, 984, 996], []]](6) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[996, 991], []]] -checking if pp: PairPath [_paths=[[996, 991], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[996, 991], []] :false the read PairPath [_paths=[[996, 991], []]](4) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[984, 996], []]] -checking if pp: PairPath [_paths=[[984, 996], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[984, 996], []] :false the read PairPath [_paths=[[984, 996], []]](2) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] -checking if pp: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[992, 993, 994, 997, 984, 996], []] :false the read PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]](2) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[992, 993, 994, 997], []]] -checking if pp: PairPath [_paths=[[992, 993, 994, 997], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[992, 993, 994, 997], []] :false the read PairPath [_paths=[[992, 993, 994, 997], []]](6) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[993, 994, 997], []]] -checking if pp: PairPath [_paths=[[993, 994, 997], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[993, 994, 997], []] :false the read PairPath [_paths=[[993, 994, 997], []]](2) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[996], []]] -checking if pp: PairPath [_paths=[[996], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[996], []] :false the read PairPath [_paths=[[996], []]](14) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[991, -2], []]] -checking if pp: PairPath [_paths=[[991, -2], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[991, -2], []] :false the read PairPath [_paths=[[991, -2], []]](1) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[-1, 992], []]] -checking if pp: PairPath [_paths=[[-1, 992], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[-1, 992], []] :false the read PairPath [_paths=[[-1, 992], []]](1) does not enforce the sub-path ([996, 991, -2]) -found: 0 reads supporting subpath. the sub-path ([996, 991, -2]) has NOT PASSED Successful extension of -2 to generate path [-1, 992, 993, 994, 997, 984, 996, 991, -2] updateReadsOfPath: [-1, 992, 993, 994, 997, 984, 996, 991, -2] read PairPath [_paths=[[991, -2], []]] is consistent with -2 pct_contained_propagated: 90.0% # [PathCounter(-2)=1 Examining potential extension of path ending at node V: 991 by successor: -2, via path=[-1, 986, 997, 984, 996, 991] TripletMapper doesnt contain node: 991 ReadsOfPathUntilV: PATH: [-1, 986, 997, 984, 996, 991] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 986], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[986, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[996, 991], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[991, -2], []]] -checking if subPath has enough read support. Exploring sub path: [996, 991, -2] -readsOfPathUntilV: PairPath [_paths=[[997, 984], []]] -checking if pp: PairPath [_paths=[[997, 984], []]] supports extension of [-1, 986, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[997, 984], []] :false the read PairPath [_paths=[[997, 984], []]](2) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[997, 984, 996], []]] -checking if pp: PairPath [_paths=[[997, 984, 996], []]] supports extension of [-1, 986, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[997, 984, 996], []] :false the read PairPath [_paths=[[997, 984, 996], []]](6) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[-1, 986], []]] -checking if pp: PairPath [_paths=[[-1, 986], []]] supports extension of [-1, 986, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[-1, 986], []] :false the read PairPath [_paths=[[-1, 986], []]](1) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[986, 997], []]] -checking if pp: PairPath [_paths=[[986, 997], []]] supports extension of [-1, 986, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[986, 997], []] :false the read PairPath [_paths=[[986, 997], []]](2) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[996, 991], []]] -checking if pp: PairPath [_paths=[[996, 991], []]] supports extension of [-1, 986, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[996, 991], []] :false the read PairPath [_paths=[[996, 991], []]](4) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[984, 996], []]] -checking if pp: PairPath [_paths=[[984, 996], []]] supports extension of [-1, 986, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[984, 996], []] :false the read PairPath [_paths=[[984, 996], []]](2) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[996], []]] -checking if pp: PairPath [_paths=[[996], []]] supports extension of [-1, 986, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[996], []] :false the read PairPath [_paths=[[996], []]](14) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[991, -2], []]] -checking if pp: PairPath [_paths=[[991, -2], []]] supports extension of [-1, 986, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[991, -2], []] :false the read PairPath [_paths=[[991, -2], []]](1) does not enforce the sub-path ([996, 991, -2]) -found: 0 reads supporting subpath. the sub-path ([996, 991, -2]) has NOT PASSED Successful extension of -2 to generate path [-1, 986, 997, 984, 996, 991, -2] updateReadsOfPath: [-1, 986, 997, 984, 996, 991, -2] read PairPath [_paths=[[991, -2], []]] is consistent with -2 pct_contained_propagated: 87.5% -2 was added to the queue QUEUE IS: [:W-1(V-2_D-1)] #### getAllProbablePaths() The next node in the queue C is -2 butterfly pct done: 10 / 8 = 125.0% pct done. ReadsStartingAtV_START_BFLY-2 EMPTY Exploring extension of: 2 paths that end at vertex: -2 == Current Paths Constructed Up To Vertex: -2 : PathPartialReconstruction@[-2] : [-1, 992, 993, 994, 997, 984, 996, 991, -2] PathPartialReconstruction@[-2] : [-1, 986, 997, 984, 996, 991, -2] the finished path: [-1, 992, 993, 994, 997, 984, 996, 991, -2] was added to the final paths, with 40 support the finished path: [-1, 986, 997, 984, 996, 991, -2] was added to the final paths, with 32 support -reconstructing sequence for path[: 1 of 2]: [-1, 986, 997, 984, 996, 991, -2] -reconstructing sequence for path[: 2 of 2]: [-1, 992, 993, 994, 997, 984, 996, 991, -2] **** Removing identical subsequences among: 2 paths. [0,1] FinalPath@BeforeFiltering: [-1, 986, 997, 984, 996, 991, -2] FinalPath@BeforeFiltering: [-1, 992, 993, 994, 997, 984, 996, 991, -2] ReadMappings BEFORE Path-to-orig_ID conversion: ## assignCompatibleReadsToPaths() assignCompatibleReadsToPaths: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] is NOT compatible with [-1, 986, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[992, 993, 994, 997], []]] is NOT compatible with [-1, 986, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[-1, 986], []]] is compatible with [-1, 986, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[-1, 992], []]] is NOT compatible with [-1, 986, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[993, 994, 997], []]] is NOT compatible with [-1, 986, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[996, 991], []]] is compatible with [-1, 986, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[996], []]] is compatible with [-1, 986, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[997, 984], []]] is compatible with [-1, 986, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[997, 984, 996], []]] is compatible with [-1, 986, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[984, 996], []]] is compatible with [-1, 986, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[986, 997], []]] is compatible with [-1, 986, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[991, -2], []]] is compatible with [-1, 986, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] is compatible with [-1, 992, 993, 994, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[992, 993, 994, 997], []]] is compatible with [-1, 992, 993, 994, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[-1, 986], []]] is NOT compatible with [-1, 992, 993, 994, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[-1, 992], []]] is compatible with [-1, 992, 993, 994, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[993, 994, 997], []]] is compatible with [-1, 992, 993, 994, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[996, 991], []]] is compatible with [-1, 992, 993, 994, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[996], []]] is compatible with [-1, 992, 993, 994, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[997, 984], []]] is compatible with [-1, 992, 993, 994, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[997, 984, 996], []]] is compatible with [-1, 992, 993, 994, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[984, 996], []]] is compatible with [-1, 992, 993, 994, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[986, 997], []]] is NOT compatible with [-1, 992, 993, 994, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[991, -2], []]] is compatible with [-1, 992, 993, 994, 997, 984, 996, 991, -2] PRELIM_FINAL_PATH: [-1, 986, 997, 984, 996, 991, -2] contains: PairPath [_paths=[[997, 984], []]] count: 2 PairPath [_paths=[[997, 984, 996], []]] count: 6 PairPath [_paths=[[-1, 986], []]] count: 1 PairPath [_paths=[[996, 991], []]] count: 4 PairPath [_paths=[[986, 997], []]] count: 2 PairPath [_paths=[[984, 996], []]] count: 2 PairPath [_paths=[[996], []]] count: 14 PairPath [_paths=[[991, -2], []]] count: 1 Total support: 32 PRELIM_FINAL_PATH: [-1, 992, 993, 994, 997, 984, 996, 991, -2] contains: PairPath [_paths=[[997, 984], []]] count: 2 PairPath [_paths=[[997, 984, 996], []]] count: 6 PairPath [_paths=[[996, 991], []]] count: 4 PairPath [_paths=[[984, 996], []]] count: 2 PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] count: 2 PairPath [_paths=[[992, 993, 994, 997], []]] count: 6 PairPath [_paths=[[993, 994, 997], []]] count: 2 PairPath [_paths=[[996], []]] count: 14 PairPath [_paths=[[991, -2], []]] count: 1 PairPath [_paths=[[-1, 992], []]] count: 1 Total support: 40 ## ILLUSTRATING FINAL ASSEMBLIES PATH: [-1, 986, 997, 984, 996, 991, -2] Path Illustration: ======= PATH: [-1, 986, 997, 984, 996, 991, -2] == Read: [[-1, 986], []] read_support: 1 == Read: [[986, 997], []] read_support: 2 == Read: [[997, 984], []] read_support: 2 === Read: [[997, 984, 996], []] read_support: 6 == Read: [[984, 996], []] read_support: 2 == Read: [[996, 991], []] read_support: 4 = Read: [[996], []] read_support: 14 == Read: [[991, -2], []] read_support: 1 PATH: [-1, 992, 993, 994, 997, 984, 996, 991, -2] Path Illustration: ========= PATH: [-1, 992, 993, 994, 997, 984, 996, 991, -2] == Read: [[-1, 992], []] read_support: 1 ====== Read: [[992, 993, 994, 997, 984, 996], []] read_support: 2 ==== Read: [[992, 993, 994, 997], []] read_support: 6 === Read: [[993, 994, 997], []] read_support: 2 == Read: [[997, 984], []] read_support: 2 === Read: [[997, 984, 996], []] read_support: 6 == Read: [[984, 996], []] read_support: 2 == Read: [[996, 991], []] read_support: 4 = Read: [[996], []] read_support: 14 == Read: [[991, -2], []] read_support: 1 Converting graph node IDs back to original IDs. -final_path: [-1, 986, 997, 984, 996, 991, -2] now set to: [-1, 945, 451, 981, 549, 717, -2] -and set to contents: <32, 0> pp: PairPath [_paths=[[997, 984], []]], updated_pp: PairPath [_paths=[[451, 981], []]], count: 2 pp: PairPath [_paths=[[997, 984, 996], []]], updated_pp: PairPath [_paths=[[451, 981, 549], []]], count: 6 pp: PairPath [_paths=[[-1, 986], []]], updated_pp: PairPath [_paths=[[-1, 945], []]], count: 1 pp: PairPath [_paths=[[996, 991], []]], updated_pp: PairPath [_paths=[[549, 717], []]], count: 4 pp: PairPath [_paths=[[986, 997], []]], updated_pp: PairPath [_paths=[[945, 451], []]], count: 2 pp: PairPath [_paths=[[984, 996], []]], updated_pp: PairPath [_paths=[[981, 549], []]], count: 2 pp: PairPath [_paths=[[996], []]], updated_pp: PairPath [_paths=[[549], []]], count: 14 pp: PairPath [_paths=[[991, -2], []]], updated_pp: PairPath [_paths=[[717, -2], []]], count: 1 -final_path: [-1, 992, 993, 994, 997, 984, 996, 991, -2] now set to: [-1, 380, 982, 440, 451, 981, 549, 717, -2] -and set to contents: <40, 0> pp: PairPath [_paths=[[997, 984], []]], updated_pp: PairPath [_paths=[[451, 981], []]], count: 2 pp: PairPath [_paths=[[997, 984, 996], []]], updated_pp: PairPath [_paths=[[451, 981, 549], []]], count: 6 pp: PairPath [_paths=[[996, 991], []]], updated_pp: PairPath [_paths=[[549, 717], []]], count: 4 pp: PairPath [_paths=[[984, 996], []]], updated_pp: PairPath [_paths=[[981, 549], []]], count: 2 pp: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]], updated_pp: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]], count: 2 pp: PairPath [_paths=[[992, 993, 994, 997], []]], updated_pp: PairPath [_paths=[[380, 982, 440, 451], []]], count: 6 pp: PairPath [_paths=[[993, 994, 997], []]], updated_pp: PairPath [_paths=[[982, 440, 451], []]], count: 2 pp: PairPath [_paths=[[996], []]], updated_pp: PairPath [_paths=[[549], []]], count: 14 pp: PairPath [_paths=[[991, -2], []]], updated_pp: PairPath [_paths=[[717, -2], []]], count: 1 pp: PairPath [_paths=[[-1, 992], []]], updated_pp: PairPath [_paths=[[-1, 380], []]], count: 1 ** Post-original ID conversion, path support: PRELIM_FINAL_PATH: [-1, 945, 451, 981, 549, 717, -2] contains: PairPath [_paths=[[549, 717], []]] count: 4 PairPath [_paths=[[945, 451], []]] count: 2 PairPath [_paths=[[717, -2], []]] count: 1 PairPath [_paths=[[451, 981, 549], []]] count: 6 PairPath [_paths=[[451, 981], []]] count: 2 PairPath [_paths=[[549], []]] count: 14 PairPath [_paths=[[-1, 945], []]] count: 1 PairPath [_paths=[[981, 549], []]] count: 2 Total support: 32 PRELIM_FINAL_PATH: [-1, 380, 982, 440, 451, 981, 549, 717, -2] contains: PairPath [_paths=[[549, 717], []]] count: 4 PairPath [_paths=[[982, 440, 451], []]] count: 2 PairPath [_paths=[[-1, 380], []]] count: 1 PairPath [_paths=[[717, -2], []]] count: 1 PairPath [_paths=[[451, 981, 549], []]] count: 6 PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] count: 2 PairPath [_paths=[[451, 981], []]] count: 2 PairPath [_paths=[[549], []]] count: 14 PairPath [_paths=[[981, 549], []]] count: 2 PairPath [_paths=[[380, 982, 440, 451], []]] count: 6 Total support: 40 SECTION ========= CD-HIT -like Removal of Too-Similar Sequences with Lesser Read Support ========= **** CD-HIT style path collapsing at end of run. [0,1] **** checking twoPathsAreTooSimilar ([-1, 380, 982, 440, 451, 981, 549, 717, -2],[-1, 945, 451, 981, 549, 717, -2]) **** getPrevCalcNumMismatches: Path1: [-1, 380, 982, 440, 451, 981, 549, 717, -2] Path2: [-1, 945, 451, 981, 549, 717, -2] Paths [-1, 380, 982, 440, 451, 981, 549, 717, -2][-1, 945, 451, 981, 549, 717, -2] share node 717 getting prefix alignment for [-1, 380, 982, 440, 451, 981, 549][-1, 945, 451, 981, 549] getPrevCalcNumMismatches: Path1: [-1, 380, 982, 440, 451, 981, 549] Path2: [-1, 945, 451, 981, 549] Paths [-1, 380, 982, 440, 451, 981, 549][-1, 945, 451, 981, 549] share node 549 getting prefix alignment for [-1, 380, 982, 440, 451, 981][-1, 945, 451, 981] getPrevCalcNumMismatches: Path1: [-1, 380, 982, 440, 451, 981] Path2: [-1, 945, 451, 981] Paths [-1, 380, 982, 440, 451, 981][-1, 945, 451, 981] share node 981 getting prefix alignment for [-1, 380, 982, 440, 451][-1, 945, 451] getPrevCalcNumMismatches: Path1: [-1, 380, 982, 440, 451] Path2: [-1, 945, 451] Paths [-1, 380, 982, 440, 451][-1, 945, 451] share node 451 getting prefix alignment for [-1, 380, 982, 440][-1, 945] getPrevCalcNumMismatches: Path1: [-1, 380, 982, 440] Path2: [-1, 945] -no shared node, alignment not cached, computing: [-1, 380, 982, 440] to [-1, 945] -path1s length: 94, path2s length: 59 -running Needleman-Wunsch alignment of path sequences Jan 11, 2022 7:52:41 AM jaligner.NeedlemanWunschGotoh construct INFO: Started... Jan 11, 2022 7:52:42 AM jaligner.NeedlemanWunschGotoh construct INFO: Finished. Jan 11, 2022 7:52:42 AM jaligner.NeedlemanWunschGotoh traceback INFO: Started... Jan 11, 2022 7:52:42 AM jaligner.NeedlemanWunschGotoh traceback INFO: Finished. A 1 GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGAC 50 .|..||||||..|.| B 1 -----------------------------------AGAATACAAAATGCC 15 A 51 TTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTA 94 ||||||.|||||||||||||.||||||||||||||||||||||| B 16 TTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTA 59 Percent A in alignment = 59 / 94 = 62.765957% Percent B in alignment = 59 / 59 = 100.0% Matches: 51, Mismatches: 8, gaps: 0, align_len: 59 percent_identity: 86.440674, percent_gapped: 0.0 max_percent_aligned: 100.0 max internal gap length: 0 (start of graph) Total number of significant alignment diffs = (mismatches: 8 + internal_gaps: 0 + right_gap_len: 0 = 8 AlignmentStats: matches: 51, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 path prefix alignment stats for: [-1, 380, 982, 440] and [-1, 945] : matches: 51, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 getPrevCalcNumMismatches: Path1: [451] Path2: [451] paths are equivalent: Path1:[451], Path2:[451] and have alignment stats:matches: 97, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 getting suffix alignment for: [][] getPrevCalcNumMismatches: Path1: [] Path2: [] suffix alignment stats: matches: 0, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 combining suffix and prefix alignment stats: matches: 148, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 path prefix alignment stats for: [-1, 380, 982, 440, 451] and [-1, 945, 451] : matches: 148, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 getPrevCalcNumMismatches: Path1: [981] Path2: [981] paths are equivalent: Path1:[981], Path2:[981] and have alignment stats:matches: 47, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 getting suffix alignment for: [][] getPrevCalcNumMismatches: Path1: [] Path2: [] key: [];[], cached as: matches: 0, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 suffix alignment stats: matches: 0, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 combining suffix and prefix alignment stats: matches: 195, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 path prefix alignment stats for: [-1, 380, 982, 440, 451, 981] and [-1, 945, 451, 981] : matches: 195, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 getPrevCalcNumMismatches: Path1: [549] Path2: [549] paths are equivalent: Path1:[549], Path2:[549] and have alignment stats:matches: 191, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 getting suffix alignment for: [][] getPrevCalcNumMismatches: Path1: [] Path2: [] key: [];[], cached as: matches: 0, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 suffix alignment stats: matches: 0, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 combining suffix and prefix alignment stats: matches: 386, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 path prefix alignment stats for: [-1, 380, 982, 440, 451, 981, 549] and [-1, 945, 451, 981, 549] : matches: 386, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 getPrevCalcNumMismatches: Path1: [717] Path2: [717] paths are equivalent: Path1:[717], Path2:[717] and have alignment stats:matches: 65, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 getting suffix alignment for: [-2][-2] getPrevCalcNumMismatches: Path1: [-2] Path2: [-2] suffix alignment stats: matches: 0, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 combining suffix and prefix alignment stats: matches: 451, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 the two paths have these stats: numMM=8, max_internal_gap_length=0, identity=97.82%, tooSimilar: false ==== Running PATH alignment of : [-1, 380, 982, 440, 451, 981, 549, 717, -2] to [-1, 945, 451, 981, 549, 717, -2] :: numMM:8, max_internal_gap: 0, path_per_id = 97.82, tooSimilar: false matches: 451, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 *** REDUCE: they are PLENTY DIFFERENT *** SECTION ========= CD-HIT -like Removal of Too-Similar Sequences with Lesser Read Support ========= **** CD-HIT style path collapsing at end of run. [0,1] **** checking twoPathsAreTooSimilar ([-1, 380, 982, 440, 451, 981, 549, 717, -2],[-1, 945, 451, 981, 549, 717, -2]) **** getPrevCalcNumMismatches: Path1: [-1, 380, 982, 440, 451, 981, 549, 717, -2] Path2: [-1, 945, 451, 981, 549, 717, -2] key: [-1, 945, 451, 981, 549, 717, -2];[-1, 380, 982, 440, 451, 981, 549, 717, -2], cached as: matches: 451, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 the two paths have these stats: numMM=8, max_internal_gap_length=0, identity=97.82%, tooSimilar: false ==== Running PATH alignment of : [-1, 380, 982, 440, 451, 981, 549, 717, -2] to [-1, 945, 451, 981, 549, 717, -2] :: numMM:8, max_internal_gap: 0, path_per_id = 97.82, tooSimilar: false matches: 451, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 *** REDUCE: they are PLENTY DIFFERENT *** Grouping paths into genes Isoform_overlap: Path_i:[-1, 380, 982, 440, 451, 981, 549, 717, -2], Path_j: [-1, 945, 451, 981, 549, 717, -2], overlap = 87.14597% IsoformEdge linking: [-1, 380, 982, 440, 451, 981, 549, 717, -2] to [-1, 945, 451, 981, 549, 717, -2] IsoformClustering, number of clusters = 1 GeneCluster[1] contains: [-1, 945, 451, 981, 549, 717, -2] GeneCluster[1] contains: [-1, 380, 982, 440, 451, 981, 549, 717, -2] Sep Gene IDs:{[-1, 945, 451, 981, 549, 717, -2]=1, [-1, 380, 982, 440, 451, 981, 549, 717, -2]=1} SECTION ====== ## BFLY_EM_REDUCE ## ========== EM on: 2 paths. // initializing EM (round 0) Frag assignment for trans: [-1, 945, 451, 981, 549, 717, -2] len=367 expr=0.4291335 sum_frags=17.5 FRAGS_ASSIGNED: [2.0, 50.0%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[945, 451], []]] FRAGS_ASSIGNED: [0.5, 50.0%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [3.0, 50.0%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [1.0, 50.0%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [7.0, 50.0%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 945], []]] FRAGS_ASSIGNED: [1.0, 50.0%] for read: PairPath [_paths=[[981, 549], []]] Frag assignment for trans: [-1, 380, 982, 440, 451, 981, 549, 717, -2] len=402 expr=0.57086647 sum_frags=25.5 FRAGS_ASSIGNED: [2.0, 50.0%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[982, 440, 451], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 380], []]] FRAGS_ASSIGNED: [0.5, 50.0%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [3.0, 50.0%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] FRAGS_ASSIGNED: [1.0, 50.0%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [7.0, 50.0%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.0, 50.0%] for read: PairPath [_paths=[[981, 549], []]] FRAGS_ASSIGNED: [6.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451], []]] ============================================ EM-round[0] #### ACCOUNTING FOR EXPR VALUES expr: 0.4291335 for path: [-1, 945, 451, 981, 549, 717, -2] expr: 0.57086647 for path: [-1, 380, 982, 440, 451, 981, 549, 717, -2] ** Sum expr: 1.0 sum_pp_log_likelihood: -23.833495394134374 for PP: PairPath [_paths=[[549, 717], []]] sum_pp_log_likelihood: -13.608721939671875 for PP: PairPath [_paths=[[945, 451], []]] sum_pp_log_likelihood: -13.037947638954698 for PP: PairPath [_paths=[[982, 440, 451], []]] sum_pp_log_likelihood: -6.518973819477349 for PP: PairPath [_paths=[[-1, 380], []]] sum_pp_log_likelihood: -5.9583738485335935 for PP: PairPath [_paths=[[717, -2], []]] sum_pp_log_likelihood: -35.75024309120156 for PP: PairPath [_paths=[[451, 981, 549], []]] sum_pp_log_likelihood: -13.037947638954698 for PP: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] sum_pp_log_likelihood: -11.916747697067187 for PP: PairPath [_paths=[[451, 981], []]] sum_pp_log_likelihood: -83.4172338794703 for PP: PairPath [_paths=[[549], []]] sum_pp_log_likelihood: -6.804360969835938 for PP: PairPath [_paths=[[-1, 945], []]] sum_pp_log_likelihood: -11.916747697067187 for PP: PairPath [_paths=[[981, 549], []]] sum_pp_log_likelihood: -39.113842916864094 for PP: PairPath [_paths=[[380, 982, 440, 451], []]] ============================================ EM-round[1] Total frags: 43.0 Frag assignment for trans: [-1, 945, 451, 981, 549, 717, -2] len=367 expr=0.4291335 sum_frags=15.444872 FRAGS_ASSIGNED: [1.7165341, 42.913353%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[945, 451], []]] FRAGS_ASSIGNED: [0.42913353, 42.913353%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [2.5748012, 42.913353%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [0.85826707, 42.913353%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [6.0078697, 42.913357%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 945], []]] FRAGS_ASSIGNED: [0.85826707, 42.913353%] for read: PairPath [_paths=[[981, 549], []]] Frag assignment for trans: [-1, 380, 982, 440, 451, 981, 549, 717, -2] len=402 expr=0.57086647 sum_frags=27.555128 FRAGS_ASSIGNED: [2.2834659, 57.086647%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[982, 440, 451], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 380], []]] FRAGS_ASSIGNED: [0.57086647, 57.086647%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [3.4251988, 57.086647%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] FRAGS_ASSIGNED: [1.1417329, 57.086647%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [7.9921303, 57.086647%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.1417329, 57.086647%] for read: PairPath [_paths=[[981, 549], []]] FRAGS_ASSIGNED: [6.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451], []]] sum_pp_log_likelihood: -23.851084579736636 for PP: PairPath [_paths=[[549, 717], []]] sum_pp_log_likelihood: -13.858569839950583 for PP: PairPath [_paths=[[945, 451], []]] sum_pp_log_likelihood: -12.882927091892052 for PP: PairPath [_paths=[[982, 440, 451], []]] sum_pp_log_likelihood: -6.441463545946026 for PP: PairPath [_paths=[[-1, 380], []]] sum_pp_log_likelihood: -5.962771144934159 for PP: PairPath [_paths=[[717, -2], []]] sum_pp_log_likelihood: -35.776626869604954 for PP: PairPath [_paths=[[451, 981, 549], []]] sum_pp_log_likelihood: -12.882927091892052 for PP: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] sum_pp_log_likelihood: -11.925542289868318 for PP: PairPath [_paths=[[451, 981], []]] sum_pp_log_likelihood: -83.47879602907823 for PP: PairPath [_paths=[[549], []]] sum_pp_log_likelihood: -6.9292849199752915 for PP: PairPath [_paths=[[-1, 945], []]] sum_pp_log_likelihood: -11.925542289868318 for PP: PairPath [_paths=[[981, 549], []]] sum_pp_log_likelihood: -38.64878127567616 for PP: PairPath [_paths=[[380, 982, 440, 451], []]] EM round[1] Prev: -264.91464, curr: -264.56433, delta: 0.35031128 [seconds: 0] #### ACCOUNTING FOR EXPR VALUES expr: 0.38040692 for path: [-1, 945, 451, 981, 549, 717, -2] expr: 0.6195931 for path: [-1, 380, 982, 440, 451, 981, 549, 717, -2] ** Sum expr: 1.0 ============================================ EM-round[2] Total frags: 43.0 Frag assignment for trans: [-1, 945, 451, 981, 549, 717, -2] len=367 expr=0.38040692 sum_frags=14.0318 FRAGS_ASSIGNED: [1.5216277, 38.04069%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[945, 451], []]] FRAGS_ASSIGNED: [0.38040692, 38.04069%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [2.2824416, 38.040695%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [0.76081383, 38.04069%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [5.325697, 38.04069%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 945], []]] FRAGS_ASSIGNED: [0.76081383, 38.04069%] for read: PairPath [_paths=[[981, 549], []]] Frag assignment for trans: [-1, 380, 982, 440, 451, 981, 549, 717, -2] len=402 expr=0.6195931 sum_frags=28.968197 FRAGS_ASSIGNED: [2.478372, 61.9593%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[982, 440, 451], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 380], []]] FRAGS_ASSIGNED: [0.619593, 61.9593%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [3.7175581, 61.9593%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] FRAGS_ASSIGNED: [1.239186, 61.9593%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [8.674302, 61.9593%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.239186, 61.9593%] for read: PairPath [_paths=[[981, 549], []]] FRAGS_ASSIGNED: [6.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451], []]] sum_pp_log_likelihood: -23.863223915046387 for PP: PairPath [_paths=[[549, 717], []]] sum_pp_log_likelihood: -14.050471368066567 for PP: PairPath [_paths=[[945, 451], []]] sum_pp_log_likelihood: -12.782907194791283 for PP: PairPath [_paths=[[982, 440, 451], []]] sum_pp_log_likelihood: -6.391453597395642 for PP: PairPath [_paths=[[-1, 380], []]] sum_pp_log_likelihood: -5.965805978761597 for PP: PairPath [_paths=[[717, -2], []]] sum_pp_log_likelihood: -35.79483587256958 for PP: PairPath [_paths=[[451, 981, 549], []]] sum_pp_log_likelihood: -12.782907194791283 for PP: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] sum_pp_log_likelihood: -11.931611957523193 for PP: PairPath [_paths=[[451, 981], []]] sum_pp_log_likelihood: -83.52128370266236 for PP: PairPath [_paths=[[549], []]] sum_pp_log_likelihood: -7.025235684033284 for PP: PairPath [_paths=[[-1, 945], []]] sum_pp_log_likelihood: -11.931611957523193 for PP: PairPath [_paths=[[981, 549], []]] sum_pp_log_likelihood: -38.34872158437385 for PP: PairPath [_paths=[[380, 982, 440, 451], []]] EM round[2] Prev: -264.56433, curr: -264.39005, delta: 0.17428589 [seconds: 0] #### ACCOUNTING FOR EXPR VALUES expr: 0.34665343 for path: [-1, 945, 451, 981, 549, 717, -2] expr: 0.65334654 for path: [-1, 380, 982, 440, 451, 981, 549, 717, -2] ** Sum expr: 1.0 ============================================ EM-round[3] Total frags: 43.0 Frag assignment for trans: [-1, 945, 451, 981, 549, 717, -2] len=367 expr=0.34665343 sum_frags=13.052951 FRAGS_ASSIGNED: [1.3866138, 34.665344%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[945, 451], []]] FRAGS_ASSIGNED: [0.34665346, 34.665344%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [2.0799208, 34.665344%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [0.6933069, 34.665344%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [4.8531485, 34.665344%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 945], []]] FRAGS_ASSIGNED: [0.6933069, 34.665344%] for read: PairPath [_paths=[[981, 549], []]] Frag assignment for trans: [-1, 380, 982, 440, 451, 981, 549, 717, -2] len=402 expr=0.65334654 sum_frags=29.947048 FRAGS_ASSIGNED: [2.6133862, 65.334656%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[982, 440, 451], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 380], []]] FRAGS_ASSIGNED: [0.65334654, 65.334656%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [3.9200792, 65.334656%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] FRAGS_ASSIGNED: [1.3066931, 65.334656%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [9.146852, 65.334656%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.3066931, 65.334656%] for read: PairPath [_paths=[[981, 549], []]] FRAGS_ASSIGNED: [6.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451], []]] sum_pp_log_likelihood: -23.871654349975895 for PP: PairPath [_paths=[[549, 717], []]] sum_pp_log_likelihood: -14.195095277929715 for PP: PairPath [_paths=[[945, 451], []]] sum_pp_log_likelihood: -12.71644277516921 for PP: PairPath [_paths=[[982, 440, 451], []]] sum_pp_log_likelihood: -6.358221387584605 for PP: PairPath [_paths=[[-1, 380], []]] sum_pp_log_likelihood: -5.967913587493974 for PP: PairPath [_paths=[[717, -2], []]] sum_pp_log_likelihood: -35.80748152496384 for PP: PairPath [_paths=[[451, 981, 549], []]] sum_pp_log_likelihood: -12.71644277516921 for PP: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] sum_pp_log_likelihood: -11.935827174987947 for PP: PairPath [_paths=[[451, 981], []]] sum_pp_log_likelihood: -83.55079022491563 for PP: PairPath [_paths=[[549], []]] sum_pp_log_likelihood: -7.0975476389648575 for PP: PairPath [_paths=[[-1, 945], []]] sum_pp_log_likelihood: -11.935827174987947 for PP: PairPath [_paths=[[981, 549], []]] sum_pp_log_likelihood: -38.149328325507625 for PP: PairPath [_paths=[[380, 982, 440, 451], []]] EM round[3] Prev: -264.39005, curr: -264.30258, delta: 0.08746338 [seconds: 0] #### ACCOUNTING FOR EXPR VALUES expr: 0.3231515 for path: [-1, 945, 451, 981, 549, 717, -2] expr: 0.67684853 for path: [-1, 380, 982, 440, 451, 981, 549, 717, -2] ** Sum expr: 1.0 ============================================ EM-round[4] Total frags: 43.0 Frag assignment for trans: [-1, 945, 451, 981, 549, 717, -2] len=367 expr=0.3231515 sum_frags=12.371393 FRAGS_ASSIGNED: [1.292606, 32.31515%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[945, 451], []]] FRAGS_ASSIGNED: [0.3231515, 32.31515%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [1.938909, 32.31515%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [0.646303, 32.31515%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [4.524121, 32.31515%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 945], []]] FRAGS_ASSIGNED: [0.646303, 32.31515%] for read: PairPath [_paths=[[981, 549], []]] Frag assignment for trans: [-1, 380, 982, 440, 451, 981, 549, 717, -2] len=402 expr=0.67684853 sum_frags=30.628607 FRAGS_ASSIGNED: [2.7073941, 67.68485%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[982, 440, 451], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 380], []]] FRAGS_ASSIGNED: [0.67684853, 67.68485%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [4.0610914, 67.68486%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] FRAGS_ASSIGNED: [1.3536971, 67.68485%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [9.47588, 67.68485%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.3536971, 67.68485%] for read: PairPath [_paths=[[981, 549], []]] FRAGS_ASSIGNED: [6.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451], []]] sum_pp_log_likelihood: -23.87753497919904 for PP: PairPath [_paths=[[549, 717], []]] sum_pp_log_likelihood: -14.302350298549943 for PP: PairPath [_paths=[[945, 451], []]] sum_pp_log_likelihood: -12.671435565613965 for PP: PairPath [_paths=[[982, 440, 451], []]] sum_pp_log_likelihood: -6.335717782806983 for PP: PairPath [_paths=[[-1, 380], []]] sum_pp_log_likelihood: -5.96938374479976 for PP: PairPath [_paths=[[717, -2], []]] sum_pp_log_likelihood: -35.81630246879856 for PP: PairPath [_paths=[[451, 981, 549], []]] sum_pp_log_likelihood: -12.671435565613965 for PP: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] sum_pp_log_likelihood: -11.93876748959952 for PP: PairPath [_paths=[[451, 981], []]] sum_pp_log_likelihood: -83.57137242719665 for PP: PairPath [_paths=[[549], []]] sum_pp_log_likelihood: -7.151175149274971 for PP: PairPath [_paths=[[-1, 945], []]] sum_pp_log_likelihood: -11.93876748959952 for PP: PairPath [_paths=[[981, 549], []]] sum_pp_log_likelihood: -38.0143066968419 for PP: PairPath [_paths=[[380, 982, 440, 451], []]] EM round[4] Prev: -264.30258, curr: -264.25854, delta: 0.044036865 [seconds: 0] #### ACCOUNTING FOR EXPR VALUES expr: 0.30672878 for path: [-1, 945, 451, 981, 549, 717, -2] expr: 0.6932712 for path: [-1, 380, 982, 440, 451, 981, 549, 717, -2] ** Sum expr: 1.0 ============================================ EM-round[5] Total frags: 43.0 Frag assignment for trans: [-1, 945, 451, 981, 549, 717, -2] len=367 expr=0.30672878 sum_frags=11.895135 FRAGS_ASSIGNED: [1.2269151, 30.672878%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[945, 451], []]] FRAGS_ASSIGNED: [0.30672878, 30.672878%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [1.8403727, 30.672878%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [0.61345756, 30.672878%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [4.294203, 30.672878%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 945], []]] FRAGS_ASSIGNED: [0.61345756, 30.672878%] for read: PairPath [_paths=[[981, 549], []]] Frag assignment for trans: [-1, 380, 982, 440, 451, 981, 549, 717, -2] len=402 expr=0.6932712 sum_frags=31.104862 FRAGS_ASSIGNED: [2.7730846, 69.32712%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[982, 440, 451], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 380], []]] FRAGS_ASSIGNED: [0.69327116, 69.32712%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [4.159627, 69.32712%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] FRAGS_ASSIGNED: [1.3865423, 69.32712%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [9.705796, 69.32712%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.3865423, 69.32712%] for read: PairPath [_paths=[[981, 549], []]] FRAGS_ASSIGNED: [6.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451], []]] sum_pp_log_likelihood: -23.88164963914862 for PP: PairPath [_paths=[[549, 717], []]] sum_pp_log_likelihood: -14.38086508513366 for PP: PairPath [_paths=[[945, 451], []]] sum_pp_log_likelihood: -12.640575967216929 for PP: PairPath [_paths=[[982, 440, 451], []]] sum_pp_log_likelihood: -6.320287983608464 for PP: PairPath [_paths=[[-1, 380], []]] sum_pp_log_likelihood: -5.970412409787155 for PP: PairPath [_paths=[[717, -2], []]] sum_pp_log_likelihood: -35.82247445872293 for PP: PairPath [_paths=[[451, 981, 549], []]] sum_pp_log_likelihood: -12.640575967216929 for PP: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] sum_pp_log_likelihood: -11.94082481957431 for PP: PairPath [_paths=[[451, 981], []]] sum_pp_log_likelihood: -83.58577373702016 for PP: PairPath [_paths=[[549], []]] sum_pp_log_likelihood: -7.19043254256683 for PP: PairPath [_paths=[[-1, 945], []]] sum_pp_log_likelihood: -11.94082481957431 for PP: PairPath [_paths=[[981, 549], []]] sum_pp_log_likelihood: -37.92172790165078 for PP: PairPath [_paths=[[380, 982, 440, 451], []]] EM round[5] Prev: -264.25854, curr: -264.23642, delta: 0.022125244 [seconds: 0] #### ACCOUNTING FOR EXPR VALUES expr: 0.29522422 for path: [-1, 945, 451, 981, 549, 717, -2] expr: 0.70477575 for path: [-1, 380, 982, 440, 451, 981, 549, 717, -2] ** Sum expr: 1.0 ============================================ EM-round[6] Total frags: 43.0 Frag assignment for trans: [-1, 945, 451, 981, 549, 717, -2] len=367 expr=0.29522422 sum_frags=11.561502 FRAGS_ASSIGNED: [1.1808969, 29.522423%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[945, 451], []]] FRAGS_ASSIGNED: [0.29522422, 29.522423%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [1.7713454, 29.522423%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [0.59044844, 29.522423%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [4.133139, 29.522423%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 945], []]] FRAGS_ASSIGNED: [0.59044844, 29.522423%] for read: PairPath [_paths=[[981, 549], []]] Frag assignment for trans: [-1, 380, 982, 440, 451, 981, 549, 717, -2] len=402 expr=0.70477575 sum_frags=31.438498 FRAGS_ASSIGNED: [2.819103, 70.47758%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[982, 440, 451], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 380], []]] FRAGS_ASSIGNED: [0.70477575, 70.47758%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [4.2286544, 70.47758%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] FRAGS_ASSIGNED: [1.4095515, 70.47758%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [9.86686, 70.47758%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.4095515, 70.47758%] for read: PairPath [_paths=[[981, 549], []]] FRAGS_ASSIGNED: [6.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451], []]] sum_pp_log_likelihood: -23.88453453877154 for PP: PairPath [_paths=[[549, 717], []]] sum_pp_log_likelihood: -14.437762328772989 for PP: PairPath [_paths=[[945, 451], []]] sum_pp_log_likelihood: -12.619238094761245 for PP: PairPath [_paths=[[982, 440, 451], []]] sum_pp_log_likelihood: -6.309619047380623 for PP: PairPath [_paths=[[-1, 380], []]] sum_pp_log_likelihood: -5.971133634692885 for PP: PairPath [_paths=[[717, -2], []]] sum_pp_log_likelihood: -35.82680180815731 for PP: PairPath [_paths=[[451, 981, 549], []]] sum_pp_log_likelihood: -12.619238094761245 for PP: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] sum_pp_log_likelihood: -11.94226726938577 for PP: PairPath [_paths=[[451, 981], []]] sum_pp_log_likelihood: -83.59587088570039 for PP: PairPath [_paths=[[549], []]] sum_pp_log_likelihood: -7.218881164386494 for PP: PairPath [_paths=[[-1, 945], []]] sum_pp_log_likelihood: -11.94226726938577 for PP: PairPath [_paths=[[981, 549], []]] sum_pp_log_likelihood: -37.85771428428374 for PP: PairPath [_paths=[[380, 982, 440, 451], []]] EM round[6] Prev: -264.23642, curr: -264.22534, delta: 0.011077881 [seconds: 0] #### ACCOUNTING FOR EXPR VALUES expr: 0.28715086 for path: [-1, 945, 451, 981, 549, 717, -2] expr: 0.71284914 for path: [-1, 380, 982, 440, 451, 981, 549, 717, -2] ** Sum expr: 1.0 ============================================ EM-round[7] Total frags: 43.000004 Frag assignment for trans: [-1, 945, 451, 981, 549, 717, -2] len=367 expr=0.28715086 sum_frags=11.327374 FRAGS_ASSIGNED: [1.1486034, 28.715086%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[945, 451], []]] FRAGS_ASSIGNED: [0.28715086, 28.715086%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [1.7229052, 28.715086%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [0.5743017, 28.715086%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [4.020112, 28.715086%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 945], []]] FRAGS_ASSIGNED: [0.5743017, 28.715086%] for read: PairPath [_paths=[[981, 549], []]] Frag assignment for trans: [-1, 380, 982, 440, 451, 981, 549, 717, -2] len=402 expr=0.71284914 sum_frags=31.672628 FRAGS_ASSIGNED: [2.8513968, 71.28492%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[982, 440, 451], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 380], []]] FRAGS_ASSIGNED: [0.7128492, 71.28492%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [4.2770953, 71.28492%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] FRAGS_ASSIGNED: [1.4256984, 71.28492%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [9.979889, 71.28492%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.4256984, 71.28492%] for read: PairPath [_paths=[[981, 549], []]] FRAGS_ASSIGNED: [6.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451], []]] sum_pp_log_likelihood: -23.88656024720119 for PP: PairPath [_paths=[[549, 717], []]] sum_pp_log_likelihood: -14.47867955886598 for PP: PairPath [_paths=[[945, 451], []]] sum_pp_log_likelihood: -12.604398963940202 for PP: PairPath [_paths=[[982, 440, 451], []]] sum_pp_log_likelihood: -6.302199481970101 for PP: PairPath [_paths=[[-1, 380], []]] sum_pp_log_likelihood: -5.971640061800297 for PP: PairPath [_paths=[[717, -2], []]] sum_pp_log_likelihood: -35.82984037080178 for PP: PairPath [_paths=[[451, 981, 549], []]] sum_pp_log_likelihood: -12.604398963940202 for PP: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] sum_pp_log_likelihood: -11.943280123600594 for PP: PairPath [_paths=[[451, 981], []]] sum_pp_log_likelihood: -83.60296086520415 for PP: PairPath [_paths=[[549], []]] sum_pp_log_likelihood: -7.23933977943299 for PP: PairPath [_paths=[[-1, 945], []]] sum_pp_log_likelihood: -11.943280123600594 for PP: PairPath [_paths=[[981, 549], []]] sum_pp_log_likelihood: -37.81319689182061 for PP: PairPath [_paths=[[380, 982, 440, 451], []]] EM round[7] Prev: -264.22534, curr: -264.2198, delta: 0.005554199 [seconds: 0] #### ACCOUNTING FOR EXPR VALUES expr: 0.28147835 for path: [-1, 945, 451, 981, 549, 717, -2] expr: 0.71852165 for path: [-1, 380, 982, 440, 451, 981, 549, 717, -2] ** Sum expr: 1.0 Expression values for each candidate path: Expr=0.7185216546058655, sum_exp_frags=31.67262840270996, path: [-1, 380, 982, 440, 451, 981, 549, 717, -2] Expr=0.2814783453941345, sum_exp_frags=11.327374458312988, path: [-1, 945, 451, 981, 549, 717, -2] Keeping TOP isoform: [-1, 380, 982, 440, 451, 981, 549, 717, -2] as having _highest_ expr=0.71852165 and 100.0% dom. iso expr for gene. Keeping isoform: [-1, 945, 451, 981, 549, 717, -2] as having expr=0.28147835 and 39.17465% dom. iso expr for gene. EM_REDUCE retaining: [-1, 380, 982, 440, 451, 981, 549, 717, -2] EM_REDUCE retaining: [-1, 945, 451, 981, 549, 717, -2] FinalPath@AfterFiltering: [-1, 380, 982, 440, 451, 981, 549, 717, -2] FinalPath@AfterFiltering: [-1, 945, 451, 981, 549, 717, -2] Final Paths: 2 Final path reported: c1_g1_i1 len=402 path=[380:0-58 982:59-82 440:83-93 451:94-167 981:168-191 549:192-359 717:360-401] [-1, 380, 982, 440, 451, 981, 549, 717, -2] Final path reported: c1_g1_i2 len=367 path=[945:0-58 451:59-132 981:133-156 549:157-324 717:325-366] [-1, 945, 451, 981, 549, 717, -2] total number of paths reported = 2 from 2 components Done make[1]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg' for target in Inchworm Chrysalis; do dh_auto_install \ --sourcedirectory=${target} --builddirectory=${target}_build; done cd Inchworm_build && make -j15 install DESTDIR=/build/trinityrnaseq-2.11.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build' /usr/bin/cmake -S/build/trinityrnaseq-2.11.0+dfsg/Inchworm -B/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/trinityrnaseq-2.11.0+dfsg/debian/tmp/usr/bin/inchworm -- Installing: /build/trinityrnaseq-2.11.0+dfsg/debian/tmp/usr/bin/FastaToDeBruijn -- Installing: /build/trinityrnaseq-2.11.0+dfsg/debian/tmp/usr/bin/fastaToKmerCoverageStats make[2]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/Inchworm_build' cd Chrysalis_build && make -j15 install DESTDIR=/build/trinityrnaseq-2.11.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' /usr/bin/cmake -S/build/trinityrnaseq-2.11.0+dfsg/Chrysalis -B/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/trinityrnaseq-2.11.0+dfsg/debian/tmp/usr/bin/Chrysalis -- Installing: /build/trinityrnaseq-2.11.0+dfsg/debian/tmp/usr/bin/GraphFromFasta -- Installing: /build/trinityrnaseq-2.11.0+dfsg/debian/tmp/usr/bin/QuantifyGraph -- Installing: /build/trinityrnaseq-2.11.0+dfsg/debian/tmp/usr/bin/ReadsToTranscripts -- Installing: /build/trinityrnaseq-2.11.0+dfsg/debian/tmp/usr/bin/BubbleUpClustering -- Installing: /build/trinityrnaseq-2.11.0+dfsg/debian/tmp/usr/bin/CreateIwormFastaBundle make[2]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/Chrysalis_build' for target in trinity-plugins/slclust trinity-plugins/scaffold_iworm_contigs trinity-plugins/bamsifter trinity-plugins/seqtk-trinity; do dh_auto_install \ --sourcedirectory=${target}; done cd trinity-plugins/slclust && make -j15 install DESTDIR=/build/trinityrnaseq-2.11.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins/slclust' X=`pwd`; \ for i in src; \ do echo '<<<' $i '>>>'; cd $X/$i; make install; done <<< src >>> make[3]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins/slclust/src' mv slclust ../bin/ make[3]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins/slclust/src' make[2]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg/trinity-plugins/slclust' make[1]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg' debian/rules override_dh_install-arch make[1]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg' dh_install -a find debian/trinityrnaseq -name '*.p?' | xargs sed -i \ 's=^#!/usr/local/bin/perl=#!/usr/bin/perl=' chmod u+x \ debian/trinityrnaseq/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/pairwise_summaries/class_to_separate_fpkm_matrices.pl \ debian/trinityrnaseq/usr/lib/trinityrnaseq/Analysis/FL_reconstruction_analysis/count_by_expression_quintile.pl \ debian/trinityrnaseq/usr/lib/trinityrnaseq/util/misc/capture_orig_n_unmapped_reads.pl \ debian/trinityrnaseq/usr/lib/trinityrnaseq/util/support_scripts/plugin_install_tests.sh \ debian/trinityrnaseq/usr/lib/trinityrnaseq/util/support_scripts/trinity_install_tests.sh chmod -R a-x debian/trinityrnaseq/usr/lib/trinityrnaseq/PerlLib/*.pm chmod -R a-x debian/trinityrnaseq/usr/lib/trinityrnaseq/PerlLib/*/*.pm find debian -name __pycache__ -type d | xargs rm -rf make[1]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg' debian/rules override_dh_install-indep make[1]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg' dh_install -i chmod u+x \ debian/trinityrnaseq-examples/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/runMe.clean.sh \ debian/trinityrnaseq-examples/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/runMe.sh \ debian/trinityrnaseq-examples/usr/share/trinityrnaseq/trinity_ext_sample_data/__regression_tests/test_GraphFromFasta/runMe.sh \ debian/trinityrnaseq-examples/usr/share/trinityrnaseq/trinity_ext_sample_data/test_Inchworm/runMe_MPI.sh \ make[1]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg' jh_installjavadoc dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link jh_installlibs jh_classpath jh_manifest jh_exec jh_depends dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/trinityrnaseq-2.11.0+dfsg' dh_fixperms find debian -name genwig.sh -exec chmod +x \{\} \; for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/trinityrnaseq-2.11.0+dfsg' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'trinityrnaseq-dbgsym' in '../trinityrnaseq-dbgsym_2.11.0+dfsg-6_amd64.deb'. dpkg-deb: building package 'trinityrnaseq-examples' in '../trinityrnaseq-examples_2.11.0+dfsg-6_all.deb'. dpkg-deb: building package 'trinityrnaseq' in '../trinityrnaseq_2.11.0+dfsg-6_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../trinityrnaseq_2.11.0+dfsg-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/30135 and its subdirectories I: Current time: Tue Jan 11 08:06:31 -12 2022 I: pbuilder-time-stamp: 1641931591 Tue Jan 11 20:06:38 UTC 2022 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Tue Jan 11 20:06:38 UTC 2022 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Tue Jan 11 20:11:00 UTC 2022 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Tue Jan 11 20:11:01 UTC 2022 I: trinityrnaseq_2.11.0+dfsg-6_amd64.changes: Format: 1.8 Date: Tue, 19 Jan 2021 14:16:26 +0100 Source: trinityrnaseq Binary: trinityrnaseq trinityrnaseq-dbgsym trinityrnaseq-examples Architecture: amd64 all Version: 2.11.0+dfsg-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: trinityrnaseq - RNA-Seq De novo Assembly trinityrnaseq-examples - RNA-Seq De novo Assembly common example and testing files Changes: trinityrnaseq (2.11.0+dfsg-6) unstable; urgency=medium . * fix typo in debian/test/control. Checksums-Sha1: 98be0049bd79e297009cec323574523820cdddba 9971308 trinityrnaseq-dbgsym_2.11.0+dfsg-6_amd64.deb 9e3ee23026e398ddd92d654404186fd62e7e2b59 255131364 trinityrnaseq-examples_2.11.0+dfsg-6_all.deb 138b8c2868cb4fe35e2046ab5e074e3b8520863d 20260 trinityrnaseq_2.11.0+dfsg-6_amd64.buildinfo 03483440c3f53cb923f30d216a84687432b3f206 1661784 trinityrnaseq_2.11.0+dfsg-6_amd64.deb Checksums-Sha256: 333987b692933e575827f564c6b19dc8ba93cc76bf64dda7ecd40092f3dd147b 9971308 trinityrnaseq-dbgsym_2.11.0+dfsg-6_amd64.deb 026d41e70a6dfed5a2bd0362c6dece0359070c5278df36564a3c27c5ee858ec6 255131364 trinityrnaseq-examples_2.11.0+dfsg-6_all.deb 99f1c19b781975aa6c9582138224ee7c2a499d4282ff31054cb0a2124a738bfb 20260 trinityrnaseq_2.11.0+dfsg-6_amd64.buildinfo 1d89c9350807b6b9f30df55b0e8661366249c1f805d0bf22e2d184b951b00f21 1661784 trinityrnaseq_2.11.0+dfsg-6_amd64.deb Files: 8f32dfe0f6aa7650754ab4116dd4e6be 9971308 debug optional trinityrnaseq-dbgsym_2.11.0+dfsg-6_amd64.deb e9c9aaed368c3d5daae3698433ca36e6 255131364 science optional trinityrnaseq-examples_2.11.0+dfsg-6_all.deb 07ae2ea84997ee9a70708b894b6b0518 20260 science optional trinityrnaseq_2.11.0+dfsg-6_amd64.buildinfo dc87627da7abd86ca8cb30b5dc5e8425 1661784 science optional trinityrnaseq_2.11.0+dfsg-6_amd64.deb Tue Jan 11 20:11:02 UTC 2022 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.LFq8pEDwdJ/trinityrnaseq_2.11.0+dfsg-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.LFq8pEDwdJ/trinityrnaseq_2.11.0+dfsg-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.LFq8pEDwdJ/trinityrnaseq_2.11.0+dfsg-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.LFq8pEDwdJ/b1/trinityrnaseq_2.11.0+dfsg-6_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.LFq8pEDwdJ/b2/trinityrnaseq_2.11.0+dfsg-6_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 3.412s) 3.412s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 3.159s) 3.159s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Tue Jan 11 20:11:07 UTC 2022 I: found no differences in the changes files, and a .buildinfo file also exists. Tue Jan 11 20:11:07 UTC 2022 I: trinityrnaseq from bullseye built successfully and reproducibly on amd64. Tue Jan 11 20:11:10 UTC 2022 I: Submitting .buildinfo files to external archives: Tue Jan 11 20:11:10 UTC 2022 I: Submitting 24K b1/trinityrnaseq_2.11.0+dfsg-6_amd64.buildinfo.asc Tue Jan 11 20:11:11 UTC 2022 I: Submitting 24K b2/trinityrnaseq_2.11.0+dfsg-6_amd64.buildinfo.asc Tue Jan 11 20:11:11 UTC 2022 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Jan 11 20:11:12 UTC 2022 I: Done submitting .buildinfo files. Tue Jan 11 20:11:12 UTC 2022 I: Removing signed trinityrnaseq_2.11.0+dfsg-6_amd64.buildinfo.asc files: removed './b1/trinityrnaseq_2.11.0+dfsg-6_amd64.buildinfo.asc' removed './b2/trinityrnaseq_2.11.0+dfsg-6_amd64.buildinfo.asc'