Wed Aug 2 15:18:44 UTC 2023 I: starting to build tnseq-transit/bullseye/amd64 on jenkins on '2023-08-02 15:18' Wed Aug 2 15:18:44 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_17/5056/console.log Wed Aug 2 15:18:44 UTC 2023 I: Downloading source for bullseye/tnseq-transit=3.2.1-1 --2023-08-02 15:18:44-- http://cdn-fastly.deb.debian.org/debian/pool/main/t/tnseq-transit/tnseq-transit_3.2.1-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2219 (2.2K) [text/prs.lines.tag] Saving to: ‘tnseq-transit_3.2.1-1.dsc’ 0K .. 100% 152M=0s 2023-08-02 15:18:44 (152 MB/s) - ‘tnseq-transit_3.2.1-1.dsc’ saved [2219/2219] Wed Aug 2 15:18:44 UTC 2023 I: tnseq-transit_3.2.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: tnseq-transit Binary: tnseq-transit Architecture: any Version: 3.2.1-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Nilesh Patra Homepage: http://saclab.tamu.edu/essentiality/transit/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/tnseq-transit Vcs-Git: https://salsa.debian.org/med-team/tnseq-transit.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3-dev, python3-setuptools, python3-numpy, python3-scipy, python3-pil, python3-matplotlib, python3-statsmodels, python3-pubsub, bwa Package-List: tnseq-transit deb science optional arch=any Checksums-Sha1: 1928dc6256cdee7589d5d3d82d560517ac1210ce 26900130 tnseq-transit_3.2.1.orig.tar.gz 2b6d45ac6a071c5be87c1fe50af2f930f210995b 5792 tnseq-transit_3.2.1-1.debian.tar.xz Checksums-Sha256: e03908fd7ceea59d968a7814055b5d2cfcdceef82b2c1059de3527e2cef2b00f 26900130 tnseq-transit_3.2.1.orig.tar.gz b62e10030e84f1fcf1eb32521339ff6163bbfb3db40290ef5ba5dbdef006f4fc 5792 tnseq-transit_3.2.1-1.debian.tar.xz Files: 739e8fe747e24ff03f0a5626b250e423 26900130 tnseq-transit_3.2.1.orig.tar.gz a40abf4e322cef4c6b5b875bd7248fa6 5792 tnseq-transit_3.2.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAl/k3kcUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafEijhAAi21c77f0hQILflnuNjDJDgfxsLtR DgxtKcCczG4h91vpxiZlrt5b4id98aZia9Qa0xVtM3Moxr3VSxV/Ncc/TY0AowBJ HsfWM3ziDOS10h0dkM3Lb5J4FluEqgavWDZFulFiTwH3M5m2imtkkIAA3N7HLEDj 3tXbRM3u5qbhQGBay0cw4wT38BViGAVR+MLrffDKCrgnSCuLrrnjaJVgpx26CzCJ Y0PQ+Z646CD++M0VLdsU3q4oUSr8yrVhNGkyMQxKWkkW59uzBIw0Uz8RCcvuBwxn aHGZ1F72hV6UIqIopM2L0xhRF65l8Fa3c23lW67r7BZ5B3ggVMsfklyBZ2XSiDDQ BLiJY316yd/AGdhUwvoec0FWmIk5kPJlaIa/LEOIxQNAa7LC9cpHDFs9lLXAWeUe B5Lq1Heds97r1nEnijUX6lXFKJuFPE7vTe/UxtulIhNI9WgSHQQxlzTz/+O/i+6b XbC6Sf4ZPwFywUQfvzin8/Rj/fq0GcNEFlzKQBUyJ9H/yIn+896SAgzH1BGXKNG8 2op8Dd7dssGRKi18UetNrlV9ppBEIHRStd/hAaLncKFyFGfCxtjZppPVoPtZF+r2 2gpgfq7WvDT2+axrm6j+1S84g3anBfO+7ySzlw71pdLNdnvn72EeNV0KzjnVNEky WiC8A2XRjOMsZcs= =Dntm -----END PGP SIGNATURE----- Wed Aug 2 15:18:44 UTC 2023 I: Checking whether the package is not for us Wed Aug 2 15:18:44 UTC 2023 I: Starting 1st build on remote node ionos1-amd64.debian.net. Wed Aug 2 15:18:44 UTC 2023 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Wed Aug 2 15:28:06 UTC 2023 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Aug 2 03:18:47 -12 2023 I: pbuilder-time-stamp: 1690989527 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [tnseq-transit_3.2.1-1.dsc] I: copying [./tnseq-transit_3.2.1.orig.tar.gz] I: copying [./tnseq-transit_3.2.1-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.l45GOS0i/trustedkeys.kbx': General error gpgv: Signature made Thu Dec 24 06:30:31 2020 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./tnseq-transit_3.2.1-1.dsc dpkg-source: info: extracting tnseq-transit in tnseq-transit-3.2.1 dpkg-source: info: unpacking tnseq-transit_3.2.1.orig.tar.gz dpkg-source: info: unpacking tnseq-transit_3.2.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip_test_requiring_non_existing_input_data.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/794524/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15 ' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='89768a17d39e4a9d9fe389b5b251ad3d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='794524' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.r2rmUt7B/pbuilderrc_6DJk --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.r2rmUt7B/b1 --logfile b1/build.log tnseq-transit_3.2.1-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 6.1.0-10-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.38-2 (2023-07-27) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jan 20 2022 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Jan 24 2023 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 69032 Jan 20 2022 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98048 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jan 20 2022 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jan 20 2022 more -rwsr-xr-x 1 root root 55528 Jan 20 2022 mount -rwxr-xr-x 1 root root 18664 Jan 20 2022 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 6 21:24 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jan 20 2022 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jan 20 2022 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jan 20 2022 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/794524/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-dev, python3-setuptools, python3-numpy, python3-scipy, python3-pil, python3-matplotlib, python3-statsmodels, python3-pubsub, bwa dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19707 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-pil; however: Package python3-pil is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-statsmodels; however: Package python3-statsmodels is not installed. pbuilder-satisfydepends-dummy depends on python3-pubsub; however: Package python3-pubsub is not installed. pbuilder-satisfydepends-dummy depends on bwa; however: Package bwa is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} bwa{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfreetype6{a} libgfortran5{a} libicu67{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmpdec3{a} libpipeline1{a} libpng16-16{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-kiwisolver{a} python3-lib2to3{a} python3-matplotlib{a} python3-minimal{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-patsy{a} python3-pil{a} python3-pkg-resources{a} python3-pubsub{a} python3-pyparsing{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-statsmodels{a} python3-statsmodels-lib{a} python3-tz{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} ttf-bitstream-vera{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-bottleneck python3-bs4 python3-colorama python3-cvxopt python3-html5lib python3-jinja2 python3-joblib python3-lxml python3-numba python3-numexpr python3-odf python3-olefile python3-openpyxl python3-tables python3-tk python3-xlwt wget 0 packages upgraded, 103 newly installed, 0 to remove and 0 not upgraded. Need to get 73.7 MB of archives. After unpacking 297 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8+deb11u1 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 mailcap all 3.69 [31.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 mime-support all 3.66 [10.9 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 bwa amd64 0.7.17-6+b1 [212 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 fonts-lyx all 2.3.6-1 [205 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3 [153 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1 [108 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 libexpat1-dev amd64 2.2.10-2+deb11u5 [141 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1+deb11u1 [418 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 libimagequant0 amd64 2.12.2-1.1 [32.5 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get: 62 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get: 63 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 64 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-ui all 1.12.1+dfsg-8+deb11u1 [232 kB] Get: 65 http://deb.debian.org/debian bullseye/main amd64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 66 http://deb.debian.org/debian bullseye/main amd64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 67 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3 [2166 kB] Get: 68 http://deb.debian.org/debian bullseye/main amd64 liblbfgsb0 amd64 3.0+dfsg.3-9 [28.5 kB] Get: 69 http://deb.debian.org/debian bullseye/main amd64 liblcms2-2 amd64 2.12~rc1-2 [150 kB] Get: 70 http://deb.debian.org/debian bullseye/main amd64 libpython3.9 amd64 3.9.2-1 [1691 kB] Get: 71 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-dev amd64 3.9.2-1 [4028 kB] Get: 72 http://deb.debian.org/debian bullseye/main amd64 libpython3-dev amd64 3.9.2-3 [21.7 kB] Get: 73 http://deb.debian.org/debian bullseye/main amd64 libwebp6 amd64 0.6.1-2.1 [258 kB] Get: 74 http://deb.debian.org/debian bullseye/main amd64 libtiff5 amd64 4.2.0-1+deb11u4 [290 kB] Get: 75 http://deb.debian.org/debian bullseye/main amd64 libwebpdemux2 amd64 0.6.1-2.1 [87.7 kB] Get: 76 http://deb.debian.org/debian bullseye/main amd64 libwebpmux3 amd64 0.6.1-2.1 [97.6 kB] Get: 77 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 78 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 79 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get: 80 http://deb.debian.org/debian bullseye/main amd64 ttf-bitstream-vera all 1.10-8.1 [223 kB] Get: 81 http://deb.debian.org/debian bullseye/main amd64 python-matplotlib-data all 3.3.4-1 [4153 kB] Get: 82 http://deb.debian.org/debian bullseye/main amd64 python3-six all 1.16.0-2 [17.5 kB] Get: 83 http://deb.debian.org/debian bullseye/main amd64 python3-cycler all 0.10.0-3 [8084 B] Get: 84 http://deb.debian.org/debian bullseye/main amd64 python3-dateutil all 2.8.1-6 [79.2 kB] Get: 85 http://deb.debian.org/debian bullseye/main amd64 python3-decorator all 4.4.2-2 [15.8 kB] Get: 86 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2+deb11u2 [191 kB] Get: 87 http://deb.debian.org/debian bullseye/main amd64 python3.9-dev amd64 3.9.2-1 [515 kB] Get: 88 http://deb.debian.org/debian bullseye/main amd64 python3-dev amd64 3.9.2-3 [24.8 kB] Get: 89 http://deb.debian.org/debian bullseye/main amd64 python3-kiwisolver amd64 1.3.1-1+b1 [55.7 kB] Get: 90 http://deb.debian.org/debian bullseye/main amd64 python3-pyparsing all 2.4.7-1 [109 kB] Get: 91 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 92 http://deb.debian.org/debian bullseye/main amd64 python3-numpy amd64 1:1.19.5-1 [2693 kB] Get: 93 http://deb.debian.org/debian bullseye/main amd64 python3-pil amd64 8.1.2+dfsg-0.3+deb11u1 [445 kB] Get: 94 http://deb.debian.org/debian bullseye/main amd64 python3-matplotlib amd64 3.3.4-1 [4163 kB] Get: 95 http://deb.debian.org/debian bullseye/main amd64 python3-tz all 2021.1-1 [34.8 kB] Get: 96 http://deb.debian.org/debian bullseye/main amd64 python3-pandas-lib amd64 1.1.5+dfsg-2 [3287 kB] Get: 97 http://deb.debian.org/debian bullseye/main amd64 python3-pandas all 1.1.5+dfsg-2 [2096 kB] Get: 98 http://deb.debian.org/debian bullseye/main amd64 python3-patsy all 0.5.1-3 [172 kB] Get: 99 http://deb.debian.org/debian bullseye/main amd64 python3-pubsub all 4.0.3-4 [46.6 kB] Get: 100 http://deb.debian.org/debian bullseye/main amd64 python3-scipy amd64 1.6.0-2 [12.3 MB] Get: 101 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB] Get: 102 http://deb.debian.org/debian bullseye/main amd64 python3-statsmodels-lib amd64 0.12.2-1 [1366 kB] Get: 103 http://deb.debian.org/debian bullseye/main amd64 python3-statsmodels all 0.12.2-1 [4455 kB] Fetched 73.7 MB in 1s (67.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19707 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8+deb11u1_amd64.deb ... Unpacking bsdextrautils (2.36.1-8+deb11u1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../1-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../3-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libpython3.9-minimal:amd64. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_amd64.deb ... Unpacking libpython3.9-minimal:amd64 (3.9.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../6-libexpat1_2.2.10-2+deb11u5_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-2+deb11u5) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_amd64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:amd64 (3.9.2-1) ... Setting up libexpat1:amd64 (2.2.10-2+deb11u5) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20574 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_amd64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../2-mailcap_3.69_all.deb ... Unpacking mailcap (3.69) ... Selecting previously unselected package mime-support. Preparing to unpack .../3-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../4-libmpdec3_2.5.1-1_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../6-libreadline8_8.1-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:amd64. Preparing to unpack .../7-libpython3.9-stdlib_3.9.2-1_amd64.deb ... Unpacking libpython3.9-stdlib:amd64 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../8-python3.9_3.9.2-1_amd64.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.9.2-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21019 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_amd64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../06-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../07-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../08-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../09-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../10-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../11-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package bwa. Preparing to unpack .../12-bwa_0.7.17-6+b1_amd64.deb ... Unpacking bwa (0.7.17-6+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../13-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../14-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../15-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../16-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../17-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../18-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../19-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../20-libelf1_0.183-1_amd64.deb ... Unpacking libelf1:amd64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../21-dwz_0.13+20210201-1_amd64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../22-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../23-libxml2_2.9.10+dfsg-6.7+deb11u4_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Selecting previously unselected package gettext. Preparing to unpack .../24-gettext_0.21-4_amd64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../25-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../26-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../27-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../28-python3-lib2to3_3.9.2-1_all.deb ... Unpacking python3-lib2to3 (3.9.2-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../29-python3-distutils_3.9.2-1_all.deb ... Unpacking python3-distutils (3.9.2-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../30-dh-python_4.20201102+nmu1_all.deb ... Unpacking dh-python (4.20201102+nmu1) ... Selecting previously unselected package fonts-lyx. Preparing to unpack .../31-fonts-lyx_2.3.6-1_all.deb ... Unpacking fonts-lyx (2.3.6-1) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../32-libblas3_3.9.0-3_amd64.deb ... Unpacking libblas3:amd64 (3.9.0-3) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../33-libbrotli1_1.0.9-2+b2_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b2) ... Selecting previously unselected package libmd0:amd64. Preparing to unpack .../34-libmd0_1.0.3-3_amd64.deb ... Unpacking libmd0:amd64 (1.0.3-3) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../35-libbsd0_0.11.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.3-1) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../36-libdeflate0_1.7-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.7-1) ... Selecting previously unselected package libexpat1-dev:amd64. Preparing to unpack .../37-libexpat1-dev_2.2.10-2+deb11u5_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.2.10-2+deb11u5) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../38-libpng16-16_1.6.37-3_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.37-3) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../39-libfreetype6_2.10.4+dfsg-1+deb11u1_amd64.deb ... Unpacking libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../40-libgfortran5_10.2.1-6_amd64.deb ... Unpacking libgfortran5:amd64 (10.2.1-6) ... Selecting previously unselected package libimagequant0:amd64. Preparing to unpack .../41-libimagequant0_2.12.2-1.1_amd64.deb ... Unpacking libimagequant0:amd64 (2.12.2-1.1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../42-libjbig0_2.1-3.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1+b2) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../43-libjpeg62-turbo_1%3a2.0.6-4_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.0.6-4) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../44-libjs-jquery_3.5.1+dfsg+~3.5.5-7_all.deb ... Unpacking libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../45-libjs-jquery-ui_1.12.1+dfsg-8+deb11u1_all.deb ... Unpacking libjs-jquery-ui (1.12.1+dfsg-8+deb11u1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../46-libjs-underscore_1.9.1~dfsg-3_all.deb ... Unpacking libjs-underscore (1.9.1~dfsg-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../47-libjs-sphinxdoc_3.4.3-2_all.deb ... Unpacking libjs-sphinxdoc (3.4.3-2) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../48-liblapack3_3.9.0-3_amd64.deb ... Unpacking liblapack3:amd64 (3.9.0-3) ... Selecting previously unselected package liblbfgsb0:amd64. Preparing to unpack .../49-liblbfgsb0_3.0+dfsg.3-9_amd64.deb ... Unpacking liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../50-liblcms2-2_2.12~rc1-2_amd64.deb ... Unpacking liblcms2-2:amd64 (2.12~rc1-2) ... Selecting previously unselected package libpython3.9:amd64. Preparing to unpack .../51-libpython3.9_3.9.2-1_amd64.deb ... Unpacking libpython3.9:amd64 (3.9.2-1) ... Selecting previously unselected package libpython3.9-dev:amd64. Preparing to unpack .../52-libpython3.9-dev_3.9.2-1_amd64.deb ... Unpacking libpython3.9-dev:amd64 (3.9.2-1) ... Selecting previously unselected package libpython3-dev:amd64. Preparing to unpack .../53-libpython3-dev_3.9.2-3_amd64.deb ... Unpacking libpython3-dev:amd64 (3.9.2-3) ... Selecting previously unselected package libwebp6:amd64. Preparing to unpack .../54-libwebp6_0.6.1-2.1_amd64.deb ... Unpacking libwebp6:amd64 (0.6.1-2.1) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../55-libtiff5_4.2.0-1+deb11u4_amd64.deb ... Unpacking libtiff5:amd64 (4.2.0-1+deb11u4) ... Selecting previously unselected package libwebpdemux2:amd64. Preparing to unpack .../56-libwebpdemux2_0.6.1-2.1_amd64.deb ... Unpacking libwebpdemux2:amd64 (0.6.1-2.1) ... Selecting previously unselected package libwebpmux3:amd64. Preparing to unpack .../57-libwebpmux3_0.6.1-2.1_amd64.deb ... Unpacking libwebpmux3:amd64 (0.6.1-2.1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../58-libxau6_1%3a1.0.9-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../59-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../60-libxcb1_1.14-3_amd64.deb ... Unpacking libxcb1:amd64 (1.14-3) ... Selecting previously unselected package ttf-bitstream-vera. Preparing to unpack .../61-ttf-bitstream-vera_1.10-8.1_all.deb ... Unpacking ttf-bitstream-vera (1.10-8.1) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../62-python-matplotlib-data_3.3.4-1_all.deb ... Unpacking python-matplotlib-data (3.3.4-1) ... Selecting previously unselected package python3-six. Preparing to unpack .../63-python3-six_1.16.0-2_all.deb ... Unpacking python3-six (1.16.0-2) ... Selecting previously unselected package python3-cycler. Preparing to unpack .../64-python3-cycler_0.10.0-3_all.deb ... Unpacking python3-cycler (0.10.0-3) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../65-python3-dateutil_2.8.1-6_all.deb ... Unpacking python3-dateutil (2.8.1-6) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../66-python3-decorator_4.4.2-2_all.deb ... Unpacking python3-decorator (4.4.2-2) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../67-zlib1g-dev_1%3a1.2.11.dfsg-2+deb11u2_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-2+deb11u2) ... Selecting previously unselected package python3.9-dev. Preparing to unpack .../68-python3.9-dev_3.9.2-1_amd64.deb ... Unpacking python3.9-dev (3.9.2-1) ... Selecting previously unselected package python3-dev. Preparing to unpack .../69-python3-dev_3.9.2-3_amd64.deb ... Unpacking python3-dev (3.9.2-3) ... Selecting previously unselected package python3-kiwisolver. Preparing to unpack .../70-python3-kiwisolver_1.3.1-1+b1_amd64.deb ... Unpacking python3-kiwisolver (1.3.1-1+b1) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../71-python3-pyparsing_2.4.7-1_all.deb ... Unpacking python3-pyparsing (2.4.7-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../72-python3-pkg-resources_52.0.0-4_all.deb ... Unpacking python3-pkg-resources (52.0.0-4) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../73-python3-numpy_1%3a1.19.5-1_amd64.deb ... Unpacking python3-numpy (1:1.19.5-1) ... Selecting previously unselected package python3-pil:amd64. Preparing to unpack .../74-python3-pil_8.1.2+dfsg-0.3+deb11u1_amd64.deb ... Unpacking python3-pil:amd64 (8.1.2+dfsg-0.3+deb11u1) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../75-python3-matplotlib_3.3.4-1_amd64.deb ... Unpacking python3-matplotlib (3.3.4-1) ... Selecting previously unselected package python3-tz. Preparing to unpack .../76-python3-tz_2021.1-1_all.deb ... Unpacking python3-tz (2021.1-1) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../77-python3-pandas-lib_1.1.5+dfsg-2_amd64.deb ... Unpacking python3-pandas-lib:amd64 (1.1.5+dfsg-2) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../78-python3-pandas_1.1.5+dfsg-2_all.deb ... Unpacking python3-pandas (1.1.5+dfsg-2) ... Selecting previously unselected package python3-patsy. Preparing to unpack .../79-python3-patsy_0.5.1-3_all.deb ... Unpacking python3-patsy (0.5.1-3) ... Selecting previously unselected package python3-pubsub. Preparing to unpack .../80-python3-pubsub_4.0.3-4_all.deb ... Unpacking python3-pubsub (4.0.3-4) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../81-python3-scipy_1.6.0-2_amd64.deb ... Unpacking python3-scipy (1.6.0-2) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../82-python3-setuptools_52.0.0-4_all.deb ... Unpacking python3-setuptools (52.0.0-4) ... Selecting previously unselected package python3-statsmodels-lib:amd64. Preparing to unpack .../83-python3-statsmodels-lib_0.12.2-1_amd64.deb ... Unpacking python3-statsmodels-lib:amd64 (0.12.2-1) ... Selecting previously unselected package python3-statsmodels. Preparing to unpack .../84-python3-statsmodels_0.12.2-1_all.deb ... Unpacking python3-statsmodels (0.12.2-1) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up liblcms2-2:amd64 (2.12~rc1-2) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up ttf-bitstream-vera (1.10-8.1) ... Setting up bsdextrautils (2.36.1-8+deb11u1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up bwa (0.7.17-6+b1) ... Setting up fonts-lyx (2.3.6-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up libdeflate0:amd64 (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:amd64 (3.9.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libexpat1-dev:amd64 (2.2.10-2+deb11u5) ... Setting up libjpeg62-turbo:amd64 (1:2.0.6-4) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up libimagequant0:amd64 (2.12.2-1.1) ... Setting up libpng16-16:amd64 (1.6.37-3) ... Setting up autopoint (0.21-4) ... Setting up libwebp6:amd64 (0.6.1-2.1) ... Setting up libgfortran5:amd64 (10.2.1-6) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2+deb11u2) ... Setting up libmd0:amd64 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libtiff5:amd64 (4.2.0-1+deb11u4) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up python-matplotlib-data (3.3.4-1) ... Setting up libwebpmux3:amd64 (0.6.1-2.1) ... Setting up libbsd0:amd64 (0.11.3-1) ... Setting up mailcap (3.69) ... Setting up libelf1:amd64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.9.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.6-15) ... Setting up libwebpdemux2:amd64 (0.6.1-2.1) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libjs-jquery-ui (1.12.1+dfsg-8+deb11u1) ... Setting up libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libpython3.9:amd64 (3.9.2-1) ... Setting up python3.9 (3.9.2-1) ... Setting up libpython3.9-dev:amd64 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-tz (2021.1-1) ... Setting up python3-six (1.16.0-2) ... Setting up python3-pil:amd64 (8.1.2+dfsg-0.3+deb11u1) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-cycler (0.10.0-3) ... Setting up python3-kiwisolver (1.3.1-1+b1) ... Setting up python3-pubsub (4.0.3-4) ... Setting up python3.9-dev (3.9.2-1) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up libpython3-dev:amd64 (3.9.2-3) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-dev (3.9.2-3) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-statsmodels-lib:amd64 (0.12.2-1) ... Setting up python3-matplotlib (3.3.4-1) ... Setting up python3-scipy (1.6.0-2) ... Setting up python3-pandas-lib:amd64 (1.1.5+dfsg-2) ... Setting up python3-patsy (0.5.1-3) ... Setting up python3-pandas (1.1.5+dfsg-2) ... Setting up python3-statsmodels (0.12.2-1) ... Processing triggers for libc-bin (2.31-13+deb11u6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/tnseq-transit-3.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../tnseq-transit_3.2.1-1_source.changes dpkg-buildpackage: info: source package tnseq-transit dpkg-buildpackage: info: source version 3.2.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/tnseq-transit-3.2.1' dh_auto_clean I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -rf tests_invalid_data rm -rf tnseq_transit.egg-info make[1]: Leaving directory '/build/tnseq-transit-3.2.1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild debian/rules override_dh_auto_configure make[1]: Entering directory '/build/tnseq-transit-3.2.1' mkdir -p tests_invalid_data mv tests/H37Rv.fna tests_invalid_data dh_auto_configure I: pybuild base:232: python3.9 setup.py config running config make[1]: Leaving directory '/build/tnseq-transit-3.2.1' dh_auto_build -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit copying src/pytransit/view_trash.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit copying src/pytransit/trash.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit copying src/pytransit/transit_tools.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit copying src/pytransit/transit_gui.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit copying src/pytransit/tnseq_tools.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit copying src/pytransit/stat_tools.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit copying src/pytransit/qcDisplay.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit copying src/pytransit/norm_tools.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit copying src/pytransit/images.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit copying src/pytransit/fileDisplay.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit copying src/pytransit/draw_trash.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit copying src/pytransit/__main__.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit copying src/pytransit/__init__.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit creating /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytpp copying src/pytpp/tpp_tools.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytpp copying src/pytpp/tpp_gui.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytpp copying src/pytpp/__main__.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytpp copying src/pytpp/__init__.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytpp creating /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/export copying src/pytransit/export/prot_table.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/export copying src/pytransit/export/mean_counts.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/export copying src/pytransit/export/igv.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/export copying src/pytransit/export/combined_wig.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/export copying src/pytransit/export/base.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/export copying src/pytransit/export/__init__.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/export creating /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/convert copying src/pytransit/convert/gff_to_prot_table.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/convert copying src/pytransit/convert/base.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/convert copying src/pytransit/convert/__init__.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/convert creating /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis copying src/pytransit/analysis/zinb.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis copying src/pytransit/analysis/utest.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis copying src/pytransit/analysis/tnseq_stats.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis copying src/pytransit/analysis/tn5gaps.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis copying src/pytransit/analysis/resampling.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis copying src/pytransit/analysis/rankproduct.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis copying src/pytransit/analysis/pathway_enrichment.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis copying src/pytransit/analysis/normalize.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis copying src/pytransit/analysis/norm.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis copying src/pytransit/analysis/hmm.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis copying src/pytransit/analysis/heatmap.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis copying src/pytransit/analysis/gumbel.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis copying src/pytransit/analysis/griffin.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis copying src/pytransit/analysis/gi.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis copying src/pytransit/analysis/example.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis copying src/pytransit/analysis/corrplot.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis copying src/pytransit/analysis/binomial.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis copying src/pytransit/analysis/base.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis copying src/pytransit/analysis/anova.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis copying src/pytransit/analysis/__init__.py -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis running egg_info creating tnseq_transit.egg-info writing tnseq_transit.egg-info/PKG-INFO writing dependency_links to tnseq_transit.egg-info/dependency_links.txt writing entry points to tnseq_transit.egg-info/entry_points.txt writing requirements to tnseq_transit.egg-info/requires.txt writing top-level names to tnseq_transit.egg-info/top_level.txt writing manifest file 'tnseq_transit.egg-info/SOURCES.txt' reading manifest file 'tnseq_transit.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'VERSION' warning: no files found matching '*.html' under directory 'src/pytransit/doc/build/html' warning: no files found matching '*.png' under directory 'src/pytransit/doc/build/html/_images' warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_modules' warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_static' writing manifest file 'tnseq_transit.egg-info/SOURCES.txt' creating /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data copying src/pytransit/data/COG_roles.dat -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data copying src/pytransit/data/GO_associated_Rvs-3-11-18.txt -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data copying src/pytransit/data/GO_associated_Rvs.csv -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data copying src/pytransit/data/GO_term_names.dat -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data copying src/pytransit/data/GO_terms_for_each_Rv.obo-3-11-18.txt -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data copying src/pytransit/data/H37Rv.sanger_associated_RVS.csv -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data copying src/pytransit/data/H37Rv_COG_roles.dat -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data copying src/pytransit/data/H37Rv_GO_terms.txt -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data copying src/pytransit/data/H37Rv_sanger_roles.dat -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data copying src/pytransit/data/README.md -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data copying src/pytransit/data/cholesterol_H37Rv_merged.wig -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data copying src/pytransit/data/cholesterol_H37Rv_rep1.wig -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data copying src/pytransit/data/cholesterol_H37Rv_rep2.wig -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data copying src/pytransit/data/cholesterol_H37Rv_rep3.wig -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data copying src/pytransit/data/cholesterol_glycerol_combined.dat -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data copying src/pytransit/data/gene_ontology.1_2.3-11-18.obo -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data copying src/pytransit/data/glycerol_H37Rv_merged.wig -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data copying src/pytransit/data/glycerol_H37Rv_rep1.wig -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data copying src/pytransit/data/glycerol_H37Rv_rep2.wig -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data copying src/pytransit/data/samples_metadata_cg.txt -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data copying src/pytransit/data/samples_metadata_cg_covar.txt -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data copying src/pytransit/data/samples_metadata_cg_interactions.txt -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data copying src/pytransit/data/sanger_roles.dat -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data copying src/pytransit/data/smeg_GO_terms.txt -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data creating /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/genomes copying src/pytransit/genomes/BCG.fna -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/genomes copying src/pytransit/genomes/BCG.prot_table -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/genomes copying src/pytransit/genomes/H37Rv.fna -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/genomes copying src/pytransit/genomes/H37Rv.prot_table -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/genomes copying src/pytransit/genomes/H37RvBD.fna -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/genomes copying src/pytransit/genomes/H37RvBD.prot_table -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/genomes copying src/pytransit/genomes/H37RvBD_mod3.prot_table -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/genomes copying src/pytransit/genomes/H37RvMA2.fna -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/genomes copying src/pytransit/genomes/H37RvMA2.prot_table -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/genomes copying src/pytransit/genomes/genomes.html -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/genomes copying src/pytransit/genomes/mc2_155_tamu.fna -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/genomes copying src/pytransit/genomes/mc2_155_tamu.prot_table -> /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/genomes debian/rules override_dh_auto_test make[1]: Entering directory '/build/tnseq-transit-3.2.1' dh_auto_test -- --system=custom --test-args="PYTHONPATH=tests {interpreter} -m unittest -v tests/*.py" I: pybuild base:232: PYTHONPATH=tests python3.9 -m unittest -v tests/*.py /build/tnseq-transit-3.2.1/tests/../src/pytpp/tpp_tools.py:648: SyntaxWarning: "is" with a literal. Did you mean "=="? if vars.num_replicons is 1: /build/tnseq-transit-3.2.1/tests/../src/pytpp/tpp_tools.py:651: SyntaxWarning: "is" with a literal. Did you mean "=="? elif len(vars.replicon_ids) is 1 and vars.replicon_ids[0].strip() == 'auto': test_Binomial (tests.test_analysis_methods.TestMethods) ... /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:910: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/../src/pytransit/data/glycerol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:910: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/../src/pytransit/data/glycerol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:927: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/../src/pytransit/data/glycerol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:927: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/../src/pytransit/data/glycerol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:1287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/data/test.prot_table' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:1214: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/data/test.prot_table' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:518: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/data/test.prot_table' mode='r' encoding='UTF-8'> for line in open(self.annotation): ResourceWarning: Enable tracemalloc to get the object allocation traceback #################### tests.test_analysis_methods.TestMethods.test_Binomial #################### [binomial] Starting Binomial Method [binomial] Getting Data [binomial] Setting Parameters [binomial] Setting Initial Values [binomial] Running Binomial Method... 0.2% [binomial] Running Binomial Method... 0.3% [binomial] Running Binomial Method... 0.4% [binomial] Running Binomial Method... 0.5% [binomial] Running Binomial Method... 0.5% [binomial] Running Binomial Method... 0.6% [binomial] Running Binomial Method... 0.7% [binomial] Running Binomial Method... 0.8% [binomial] Running Binomial Method... 0.9% [binomial] Running Binomial Method... 1.0% [binomial] Running Binomial Method... 1.1% [binomial] Running Binomial Method... 1.2% [binomial] Running Binomial Method... 1.3% [binomial] Running Binomial Method... 1.4% [binomial] Running Binomial Method... 1.5% [binomial] Running Binomial Method... 1.5% [binomial] Running Binomial Method... 1.6% [binomial] Running Binomial Method... 1.7% [binomial] Running Binomial Method... 1.8% [binomial] Running Binomial Method... 1.9% [binomial] Running Binomial Method... 2.0% [binomial] Running Binomial Method... 2.1% [binomial] Running Binomial Method... 2.2% [binomial] Running Binomial Method... 2.3% [binomial] Running Binomial Method... 2.4% [binomial] Running Binomial Method... 2.5% [binomial] Running Binomial Method... 2.5% [binomial] Running Binomial Method... 2.6% [binomial] Running Binomial Method... 2.7% [binomial] Running Binomial Method... 2.8% [binomial] Running Binomial Method... 2.9% [binomial] Running Binomial Method... 3.0% [binomial] Running Binomial Method... 3.1% [binomial] Running Binomial Method... 3.2% [binomial] Running Binomial Method... 3.3% [binomial] Running Binomial Method... 3.4% [binomial] Running Binomial Method... 3.5% [binomial] Running Binomial Method... 3.5% [binomial] Running Binomial Method... 3.6% [binomial] Running Binomial Method... 3.7% [binomial] Running Binomial Method... 3.8% [binomial] Running Binomial Method... 3.9% [binomial] Running Binomial Method... 4.0% [binomial] Running Binomial Method... 4.1% [binomial] Running Binomial Method... 4.2% [binomial] Running Binomial Method... 4.3% [binomial] Running Binomial Method... 4.4% [binomial] Running Binomial Method... 4.5% [binomial] Running Binomial Method... 4.5% [binomial] Running Binomial Method... 4.6% [binomial] Running Binomial Method... 4.7% [binomial] Running Binomial Method... 4.8% [binomial] Running Binomial Method... 4.9% [binomial] Running Binomial Method... 5.0% [binomial] Running Binomial Method... 5.1% [binomial] Running Binomial Method... 5.2% [binomial] Running Binomial Method... 5.3% [binomial] Running Binomial Method... 5.4% [binomial] Running Binomial Method... 5.5% [binomial] Running Binomial Method... 5.5% [binomial] Running Binomial Method... 5.6% [binomial] Running Binomial Method... 5.7% [binomial] Running Binomial Method... 5.8% [binomial] Running Binomial Method... 5.9% [binomial] Running Binomial Method... 6.0% [binomial] Running Binomial Method... 6.1% [binomial] Running Binomial Method... 6.2% [binomial] Running Binomial Method... 6.3% [binomial] Running Binomial Method... 6.4% [binomial] Running Binomial Method... 6.5% [binomial] Running Binomial Method... 6.5% [binomial] Running Binomial Method... 6.6% [binomial] Running Binomial Method... 6.7% [binomial] Running Binomial Method... 6.8% [binomial] Running Binomial Method... 6.9% [binomial] Running Binomial Method... 7.0% [binomial] Running Binomial Method... 7.1% [binomial] Running Binomial Method... 7.2% [binomial] Running Binomial Method... 7.3% [binomial] Running Binomial Method... 7.4% [binomial] Running Binomial Method... 7.5% [binomial] Running Binomial Method... 7.5% [binomial] Running Binomial Method... 7.6% [binomial] Running Binomial Method... 7.7% [binomial] Running Binomial Method... 7.8% [binomial] Running Binomial Method... 7.9% [binomial] Running Binomial Method... 8.0% [binomial] Running Binomial Method... 8.1% [binomial] Running Binomial Method... 8.2% [binomial] Running Binomial Method... 8.3% [binomial] Running Binomial Method... 8.4% [binomial] Running Binomial Method... 8.5% [binomial] Running Binomial Method... 8.5% [binomial] Running Binomial Method... 8.6% [binomial] Running Binomial Method... 8.7% [binomial] Running Binomial Method... 8.8% [binomial] Running Binomial Method... 8.9% [binomial] Running Binomial Method... 9.0% [binomial] Running Binomial Method... 9.1% [binomial] Running Binomial Method... 9.2% [binomial] Running Binomial Method... 9.3% [binomial] Running Binomial Method... 9.4% [binomial] Running Binomial Method... 9.5% [binomial] Running Binomial Method... 9.5% [binomial] Running Binomial Method... 9.6% [binomial] Running Binomial Method... 9.7% [binomial] Running Binomial Method... 9.8% [binomial] Running Binomial Method... 9.9% [binomial] Running Binomial Method... 10.0% [binomial] Running Binomial Method... 10.1% [binomial] Running Binomial Method... 10.2% [binomial] Running Binomial Method... 10.3% [binomial] Running Binomial Method... 10.4% [binomial] Running Binomial Method... 10.5% [binomial] Running Binomial Method... 10.5% [binomial] Running Binomial Method... 10.6% [binomial] Running Binomial Method... 10.7% [binomial] Running Binomial Method... 10.8% [binomial] Running Binomial Method... 10.9% [binomial] Running Binomial Method... 11.0% [binomial] Running Binomial Method... 11.1% [binomial] Running Binomial Method... 11.2% [binomial] Running Binomial Method... 11.3% [binomial] Running Binomial Method... 11.4% [binomial] Running Binomial Method... 11.5% [binomial] Running Binomial Method... 11.5% [binomial] Running Binomial Method... 11.6% [binomial] Running Binomial Method... 11.7% [binomial] Running Binomial Method... 11.8% [binomial] Running Binomial Method... 11.9% [binomial] Running Binomial Method... 12.0% [binomial] Running Binomial Method... 12.1% [binomial] Running Binomial Method... 12.2% [binomial] Running Binomial Method... 12.3% [binomial] Running Binomial Method... 12.4% [binomial] Running Binomial Method... 12.5% [binomial] Running Binomial Method... 12.5% [binomial] Running Binomial Method... 12.6% [binomial] Running Binomial Method... 12.7% [binomial] Running Binomial Method... 12.8% [binomial] Running Binomial Method... 12.9% [binomial] Running Binomial Method... 13.0% [binomial] Running Binomial Method... 13.1% [binomial] Running Binomial Method... 13.2% [binomial] Running Binomial Method... 13.3% [binomial] Running Binomial Method... 13.4% [binomial] Running Binomial Method... 13.5% [binomial] Running Binomial Method... 13.5% [binomial] Running Binomial Method... 13.6% [binomial] Running Binomial Method... 13.7% [binomial] Running Binomial Method... 13.8% [binomial] Running Binomial Method... 13.9% [binomial] Running Binomial Method... 14.0% [binomial] Running Binomial Method... 14.1% [binomial] Running Binomial Method... 14.2% [binomial] Running Binomial Method... 14.3% [binomial] Running Binomial Method... 14.4% [binomial] Running Binomial Method... 14.5% [binomial] Running Binomial Method... 14.5% [binomial] Running Binomial Method... 14.6% [binomial] Running Binomial Method... 14.7% [binomial] Running Binomial Method... 14.8% [binomial] Running Binomial Method... 14.9% [binomial] Running Binomial Method... 15.0% [binomial] Running Binomial Method... 15.1% [binomial] Running Binomial Method... 15.2% [binomial] Running Binomial Method... 15.3% [binomial] Running Binomial Method... 15.4% [binomial] Running Binomial Method... 15.5% [binomial] Running Binomial Method... 15.5% [binomial] Running Binomial Method... 15.6% [binomial] Running Binomial Method... 15.7% [binomial] Running Binomial Method... 15.8% [binomial] Running Binomial Method... 15.9% [binomial] Running Binomial Method... 16.0% [binomial] Running Binomial Method... 16.1% [binomial] Running Binomial Method... 16.2% [binomial] Running Binomial Method... 16.3% [binomial] Running Binomial Method... 16.4% [binomial] Running Binomial Method... 16.5% [binomial] Running Binomial Method... 16.5% [binomial] Running Binomial Method... 16.6% [binomial] Running Binomial Method... 16.7% [binomial] Running Binomial Method... 16.8% [binomial] Running Binomial Method... 16.9% [binomial] Running Binomial Method... 17.0% [binomial] Running Binomial Method... 17.1% [binomial] Running Binomial Method... 17.2% [binomial] Running Binomial Method... 17.3% [binomial] Running Binomial Method... 17.4% [binomial] Running Binomial Method... 17.5% [binomial] Running Binomial Method... 17.5% [binomial] Running Binomial Method... 17.6% [binomial] Running Binomial Method... 17.7% [binomial] Running Binomial Method... 17.8% [binomial] Running Binomial Method... 17.9% [binomial] Running Binomial Method... 18.0% [binomial] Running Binomial Method... 18.1% [binomial] Running Binomial Method... 18.2% [binomial] Running Binomial Method... 18.3% [binomial] Running Binomial Method... 18.4% [binomial] Running Binomial Method... 18.5% [binomial] Running Binomial Method... 18.5% [binomial] Running Binomial Method... 18.6% [binomial] Running Binomial Method... 18.7% [binomial] Running Binomial Method... 18.8% [binomial] Running Binomial Method... 18.9% [binomial] Running Binomial Method... 19.0% [binomial] Running Binomial Method... 19.1% [binomial] Running Binomial Method... 19.2% [binomial] Running Binomial Method... 19.3% [binomial] Running Binomial Method... 19.4% [binomial] Running Binomial Method... 19.5% [binomial] Running Binomial Method... 19.5% [binomial] Running Binomial Method... 19.6% [binomial] Running Binomial Method... 19.7% [binomial] Running Binomial Method... 19.8% [binomial] Running Binomial Method... 19.9% [binomial] Running Binomial Method... 20.0% [binomial] Running Binomial Method... 20.1% [binomial] Running Binomial Method... 20.2% [binomial] Running Binomial Method... 20.3% [binomial] Running Binomial Method... 20.4% [binomial] Running Binomial Method... 20.5% [binomial] Running Binomial Method... 20.5% [binomial] Running Binomial Method... 20.6% [binomial] Running Binomial Method... 20.7% [binomial] Running Binomial Method... 20.8% [binomial] Running Binomial Method... 20.9% [binomial] Running Binomial Method... 21.0% [binomial] Running Binomial Method... 21.1% [binomial] Running Binomial Method... 21.2% [binomial] Running Binomial Method... 21.3% [binomial] Running Binomial Method... 21.4% [binomial] Running Binomial Method... 21.5% [binomial] Running Binomial Method... 21.5% [binomial] Running Binomial Method... 21.6% [binomial] Running Binomial Method... 21.7% [binomial] Running Binomial Method... 21.8% [binomial] Running Binomial Method... 21.9% [binomial] Running Binomial Method... 22.0% [binomial] Running Binomial Method... 22.1% [binomial] Running Binomial Method... 22.2% [binomial] Running Binomial Method... 22.3% [binomial] Running Binomial Method... 22.4% [binomial] Running Binomial Method... 22.5% [binomial] Running Binomial Method... 22.5% [binomial] Running Binomial Method... 22.6% [binomial] Running Binomial Method... 22.7% [binomial] Running Binomial Method... 22.8% [binomial] Running Binomial Method... 22.9% [binomial] Running Binomial Method... 23.0% [binomial] Running Binomial Method... 23.1% [binomial] Running Binomial Method... 23.2% [binomial] Running Binomial Method... 23.3% [binomial] Running Binomial Method... 23.4% [binomial] Running Binomial Method... 23.5% [binomial] Running Binomial Method... 23.5% [binomial] Running Binomial Method... 23.6% [binomial] Running Binomial Method... 23.7% [binomial] Running Binomial Method... 23.8% [binomial] Running Binomial Method... 23.9% [binomial] Running Binomial Method... 24.0% [binomial] Running Binomial Method... 24.1% [binomial] Running Binomial Method... 24.2% [binomial] Running Binomial Method... 24.3% [binomial] Running Binomial Method... 24.4% [binomial] Running Binomial Method... 24.5% [binomial] Running Binomial Method... 24.5% [binomial] Running Binomial Method... 24.6% [binomial] Running Binomial Method... 24.7% [binomial] Running Binomial Method... 24.8% [binomial] Running Binomial Method... 24.9% [binomial] Running Binomial Method... 25.0% [binomial] Running Binomial Method... 25.1% [binomial] Running Binomial Method... 25.2% [binomial] Running Binomial Method... 25.3% [binomial] Running Binomial Method... 25.4% [binomial] Running Binomial Method... 25.5% [binomial] Running Binomial Method... 25.5% [binomial] Running Binomial Method... 25.6% [binomial] Running Binomial Method... 25.7% [binomial] Running Binomial Method... 25.8% [binomial] Running Binomial Method... 25.9% [binomial] Running Binomial Method... 26.0% [binomial] Running Binomial Method... 26.1% [binomial] Running Binomial Method... 26.2% [binomial] Running Binomial Method... 26.3% [binomial] Running Binomial Method... 26.4% [binomial] Running Binomial Method... 26.5% [binomial] Running Binomial Method... 26.5% [binomial] Running Binomial Method... 26.6% [binomial] Running Binomial Method... 26.7% [binomial] Running Binomial Method... 26.8% [binomial] Running Binomial Method... 26.9% [binomial] Running Binomial Method... 27.0% [binomial] Running Binomial Method... 27.1% [binomial] Running Binomial Method... 27.2% [binomial] Running Binomial Method... 27.3% [binomial] Running Binomial Method... 27.4% [binomial] Running Binomial Method... 27.5% [binomial] Running Binomial Method... 27.5% [binomial] Running Binomial Method... 27.6% [binomial] Running Binomial Method... 27.7% [binomial] Running Binomial Method... 27.8% [binomial] Running Binomial Method... 27.9% [binomial] Running Binomial Method... 28.0% [binomial] Running Binomial Method... 28.1% [binomial] Running Binomial Method... 28.2% [binomial] Running Binomial Method... 28.3% [binomial] Running Binomial Method... 28.4% [binomial] Running Binomial Method... 28.5% [binomial] Running Binomial Method... 28.5% [binomial] Running Binomial Method... 28.6% [binomial] Running Binomial Method... 28.7% [binomial] Running Binomial Method... 28.8% [binomial] Running Binomial Method... 28.9% [binomial] Running Binomial Method... 29.0% [binomial] Running Binomial Method... 29.1% [binomial] Running Binomial Method... 29.2% [binomial] Running Binomial Method... 29.3% [binomial] Running Binomial Method... 29.4% [binomial] Running Binomial Method... 29.5% [binomial] Running Binomial Method... 29.5% [binomial] Running Binomial Method... 29.6% [binomial] Running Binomial Method... 29.7% [binomial] Running Binomial Method... 29.8% [binomial] Running Binomial Method... 29.9% [binomial] Running Binomial Method... 30.0% [binomial] Running Binomial Method... 30.1% [binomial] Running Binomial Method... 30.2% [binomial] Running Binomial Method... 30.3% [binomial] Running Binomial Method... 30.4% [binomial] Running Binomial Method... 30.5% [binomial] Running Binomial Method... 30.5% [binomial] Running Binomial Method... 30.6% [binomial] Running Binomial Method... 30.7% [binomial] Running Binomial Method... 30.8% [binomial] Running Binomial Method... 30.9% [binomial] Running Binomial Method... 31.0% [binomial] Running Binomial Method... 31.1% [binomial] Running Binomial Method... 31.2% [binomial] Running Binomial Method... 31.3% [binomial] Running Binomial Method... 31.4% [binomial] Running Binomial Method... 31.5% [binomial] Running Binomial Method... 31.5% [binomial] Running Binomial Method... 31.6% [binomial] Running Binomial Method... 31.7% [binomial] Running Binomial Method... 31.8% [binomial] Running Binomial Method... 31.9% [binomial] Running Binomial Method... 32.0% [binomial] Running Binomial Method... 32.1% [binomial] Running Binomial Method... 32.2% [binomial] Running Binomial Method... 32.3% [binomial] Running Binomial Method... 32.4% [binomial] Running Binomial Method... 32.5% [binomial] Running Binomial Method... 32.5% [binomial] Running Binomial Method... 32.6% [binomial] Running Binomial Method... 32.7% [binomial] Running Binomial Method... 32.8% [binomial] Running Binomial Method... 32.9% [binomial] Running Binomial Method... 33.0% [binomial] Running Binomial Method... 33.1% [binomial] Running Binomial Method... 33.2% [binomial] Running Binomial Method... 33.3% [binomial] Running Binomial Method... 33.4% [binomial] Running Binomial Method... 33.5% [binomial] Running Binomial Method... 33.5% [binomial] Running Binomial Method... 33.6% [binomial] Running Binomial Method... 33.7% [binomial] Running Binomial Method... 33.8% [binomial] Running Binomial Method... 33.9% [binomial] Running Binomial Method... 34.0% [binomial] Running Binomial Method... 34.1% [binomial] Running Binomial Method... 34.2% [binomial] Running Binomial Method... 34.3% [binomial] Running Binomial Method... 34.4% [binomial] Running Binomial Method... 34.5% [binomial] Running Binomial Method... 34.5% [binomial] Running Binomial Method... 34.6% [binomial] Running Binomial Method... 34.7% [binomial] Running Binomial Method... 34.8% [binomial] Running Binomial Method... 34.9% [binomial] Running Binomial Method... 35.0% [binomial] Running Binomial Method... 35.1% [binomial] Running Binomial Method... 35.2% [binomial] Running Binomial Method... 35.3% [binomial] Running Binomial Method... 35.4% [binomial] Running Binomial Method... 35.5% [binomial] Running Binomial Method... 35.5% [binomial] Running Binomial Method... 35.6% [binomial] Running Binomial Method... 35.7% [binomial] Running Binomial Method... 35.8% [binomial] Running Binomial Method... 35.9% [binomial] Running Binomial Method... 36.0% [binomial] Running Binomial Method... 36.1% [binomial] Running Binomial Method... 36.2% [binomial] Running Binomial Method... 36.3% [binomial] Running Binomial Method... 36.4% [binomial] Running Binomial Method... 36.5% [binomial] Running Binomial Method... 36.5% [binomial] Running Binomial Method... 36.6% [binomial] Running Binomial Method... 36.7% [binomial] Running Binomial Method... 36.8% [binomial] Running Binomial Method... 36.9% [binomial] Running Binomial Method... 37.0% [binomial] Running Binomial Method... 37.1% [binomial] Running Binomial Method... 37.2% [binomial] Running Binomial Method... 37.3% [binomial] Running Binomial Method... 37.4% [binomial] Running Binomial Method... 37.5% [binomial] Running Binomial Method... 37.5% [binomial] Running Binomial Method... 37.6% [binomial] Running Binomial Method... 37.7% [binomial] Running Binomial Method... 37.8% [binomial] Running Binomial Method... 37.9% [binomial] Running Binomial Method... 38.0% [binomial] Running Binomial Method... 38.1% [binomial] Running Binomial Method... 38.2% [binomial] Running Binomial Method... 38.3% [binomial] Running Binomial Method... 38.4% [binomial] Running Binomial Method... 38.5% [binomial] Running Binomial Method... 38.5% [binomial] Running Binomial Method... 38.6% [binomial] Running Binomial Method... 38.7% [binomial] Running Binomial Method... 38.8% [binomial] Running Binomial Method... 38.9% [binomial] Running Binomial Method... 39.0% [binomial] Running Binomial Method... 39.1% [binomial] Running Binomial Method... 39.2% [binomial] Running Binomial Method... 39.3% [binomial] Running Binomial Method... 39.4% [binomial] Running Binomial Method... 39.5% [binomial] Running Binomial Method... 39.5% [binomial] Running Binomial Method... 39.6% [binomial] Running Binomial Method... 39.7% [binomial] Running Binomial Method... 39.8% [binomial] Running Binomial Method... 39.9% [binomial] Running Binomial Method... 40.0% [binomial] Running Binomial Method... 40.1% [binomial] Running Binomial Method... 40.2% [binomial] Running Binomial Method... 40.3% [binomial] Running Binomial Method... 40.4% [binomial] Running Binomial Method... 40.5% [binomial] Running Binomial Method... 40.5% [binomial] Running Binomial Method... 40.6% [binomial] Running Binomial Method... 40.7% [binomial] Running Binomial Method... 40.8% [binomial] Running Binomial Method... 40.9% [binomial] Running Binomial Method... 41.0% [binomial] Running Binomial Method... 41.1% [binomial] Running Binomial Method... 41.2% [binomial] Running Binomial Method... 41.3% [binomial] Running Binomial Method... 41.4% [binomial] Running Binomial Method... 41.5% [binomial] Running Binomial Method... 41.5% [binomial] Running Binomial Method... 41.6% [binomial] Running Binomial Method... 41.7% [binomial] Running Binomial Method... 41.8% [binomial] Running Binomial Method... 41.9% [binomial] Running Binomial Method... 42.0% [binomial] Running Binomial Method... 42.1% [binomial] Running Binomial Method... 42.2% [binomial] Running Binomial Method... 42.3% [binomial] Running Binomial Method... 42.4% [binomial] Running Binomial Method... 42.5% [binomial] Running Binomial Method... 42.5% [binomial] Running Binomial Method... 42.6% [binomial] Running Binomial Method... 42.7% [binomial] Running Binomial Method... 42.8% [binomial] Running Binomial Method... 42.9% [binomial] Running Binomial Method... 43.0% [binomial] Running Binomial Method... 43.1% [binomial] Running Binomial Method... 43.2% [binomial] Running Binomial Method... 43.3% [binomial] Running Binomial Method... 43.4% [binomial] Running Binomial Method... 43.5% [binomial] Running Binomial Method... 43.5% [binomial] Running Binomial Method... 43.6% [binomial] Running Binomial Method... 43.7% [binomial] Running Binomial Method... 43.8% [binomial] Running Binomial Method... 43.9% [binomial] Running Binomial Method... 44.0% [binomial] Running Binomial Method... 44.1% [binomial] Running Binomial Method... 44.2% [binomial] Running Binomial Method... 44.3% [binomial] Running Binomial Method... 44.4% [binomial] Running Binomial Method... 44.5% [binomial] Running Binomial Method... 44.5% [binomial] Running Binomial Method... 44.6% [binomial] Running Binomial Method... 44.7% [binomial] Running Binomial Method... 44.8% [binomial] Running Binomial Method... 44.9% [binomial] Running Binomial Method... 45.0% [binomial] Running Binomial Method... 45.1% [binomial] Running Binomial Method... 45.2% [binomial] Running Binomial Method... 45.3% [binomial] Running Binomial Method... 45.4% [binomial] Running Binomial Method... 45.5% [binomial] Running Binomial Method... 45.5% [binomial] Running Binomial Method... 45.6% [binomial] Running Binomial Method... 45.7% [binomial] Running Binomial Method... 45.8% [binomial] Running Binomial Method... 45.9% [binomial] Running Binomial Method... 46.0% [binomial] Running Binomial Method... 46.1% [binomial] Running Binomial Method... 46.2% [binomial] Running Binomial Method... 46.3% [binomial] Running Binomial Method... 46.4% [binomial] Running Binomial Method... 46.5% [binomial] Running Binomial Method... 46.5% [binomial] Running Binomial Method... 46.6% [binomial] Running Binomial Method... 46.7% [binomial] Running Binomial Method... 46.8% [binomial] Running Binomial Method... 46.9% [binomial] Running Binomial Method... 47.0% [binomial] Running Binomial Method... 47.1% [binomial] Running Binomial Method... 47.2% [binomial] Running Binomial Method... 47.3% [binomial] Running Binomial Method... 47.4% [binomial] Running Binomial Method... 47.5% [binomial] Running Binomial Method... 47.5% [binomial] Running Binomial Method... 47.6% [binomial] Running Binomial Method... 47.7% [binomial] Running Binomial Method... 47.8% [binomial] Running Binomial Method... 47.9% [binomial] Running Binomial Method... 48.0% [binomial] Running Binomial Method... 48.1% [binomial] Running Binomial Method... 48.2% [binomial] Running Binomial Method... 48.3% [binomial] Running Binomial Method... 48.4% [binomial] Running Binomial Method... 48.5% [binomial] Running Binomial Method... 48.5% [binomial] Running Binomial Method... 48.6% [binomial] Running Binomial Method... 48.7% [binomial] Running Binomial Method... 48.8% [binomial] Running Binomial Method... 48.9% [binomial] Running Binomial Method... 49.0% [binomial] Running Binomial Method... 49.1% [binomial] Running Binomial Method... 49.2% [binomial] Running Binomial Method... 49.3% [binomial] Running Binomial Method... 49.4% [binomial] Running Binomial Method... 49.5% [binomial] Running Binomial Method... 49.5% [binomial] Running Binomial Method... 49.6% [binomial] Running Binomial Method... 49.7% [binomial] Running Binomial Method... 49.8% [binomial] Running Binomial Method... 49.9% [binomial] Running Binomial Method... 50.0% [binomial] Running Binomial Method... 50.1% [binomial] Running Binomial Method... 50.2% [binomial] Running Binomial Method... 50.3% [binomial] Running Binomial Method... 50.4% [binomial] Running Binomial Method... 50.5% [binomial] Running Binomial Method... 50.5% [binomial] Running Binomial Method... 50.6% [binomial] Running Binomial Method... 50.7% [binomial] Running Binomial Method... 50.8% [binomial] Running Binomial Method... 50.9% [binomial] Running Binomial Method... 51.0% [binomial] Running Binomial Method... 51.1% [binomial] Running Binomial Method... 51.2% [binomial] Running Binomial Method... 51.3% [binomial] Running Binomial Method... 51.4% [binomial] Running Binomial Method... 51.5% [binomial] Running Binomial Method... 51.5% [binomial] Running Binomial Method... 51.6% [binomial] Running Binomial Method... 51.7% [binomial] Running Binomial Method... 51.8% [binomial] Running Binomial Method... 51.9% [binomial] Running Binomial Method... 52.0% [binomial] Running Binomial Method... 52.1% [binomial] Running Binomial Method... 52.2% [binomial] Running Binomial Method... 52.3% [binomial] Running Binomial Method... 52.4% [binomial] Running Binomial Method... 52.5% [binomial] Running Binomial Method... 52.5% [binomial] Running Binomial Method... 52.6% [binomial] Running Binomial Method... 52.7% [binomial] Running Binomial Method... 52.8% [binomial] Running Binomial Method... 52.9% [binomial] Running Binomial Method... 53.0% [binomial] Running Binomial Method... 53.1% [binomial] Running Binomial Method... 53.2% [binomial] Running Binomial Method... 53.3% [binomial] Running Binomial Method... 53.4% [binomial] Running Binomial Method... 53.5% [binomial] Running Binomial Method... 53.5% [binomial] Running Binomial Method... 53.6% [binomial] Running Binomial Method... 53.7% [binomial] Running Binomial Method... 53.8% [binomial] Running Binomial Method... 53.9% [binomial] Running Binomial Method... 54.0% [binomial] Running Binomial Method... 54.1% [binomial] Running Binomial Method... 54.2% [binomial] Running Binomial Method... 54.3% [binomial] Running Binomial Method... 54.4% [binomial] Running Binomial Method... 54.5% [binomial] Running Binomial Method... 54.5% [binomial] Running Binomial Method... 54.6% [binomial] Running Binomial Method... 54.7% [binomial] Running Binomial Method... 54.8% [binomial] Running Binomial Method... 54.9% [binomial] Running Binomial Method... 55.0% [binomial] Running Binomial Method... 55.1% [binomial] Running Binomial Method... 55.2% [binomial] Running Binomial Method... 55.3% [binomial] Running Binomial Method... 55.4% [binomial] Running Binomial Method... 55.5% [binomial] Running Binomial Method... 55.5% [binomial] Running Binomial Method... 55.6% [binomial] Running Binomial Method... 55.7% [binomial] Running Binomial Method... 55.8% [binomial] Running Binomial Method... 55.9% [binomial] Running Binomial Method... 56.0% [binomial] Running Binomial Method... 56.1% [binomial] Running Binomial Method... 56.2% [binomial] Running Binomial Method... 56.3% [binomial] Running Binomial Method... 56.4% [binomial] Running Binomial Method... 56.5% [binomial] Running Binomial Method... 56.5% [binomial] Running Binomial Method... 56.6% [binomial] Running Binomial Method... 56.7% [binomial] Running Binomial Method... 56.8% [binomial] Running Binomial Method... 56.9% [binomial] Running Binomial Method... 57.0% [binomial] Running Binomial Method... 57.1% [binomial] Running Binomial Method... 57.2% [binomial] Running Binomial Method... 57.3% [binomial] Running Binomial Method... 57.4% [binomial] Running Binomial Method... 57.5% [binomial] Running Binomial Method... 57.5% [binomial] Running Binomial Method... 57.6% [binomial] Running Binomial Method... 57.7% [binomial] Running Binomial Method... 57.8% [binomial] Running Binomial Method... 57.9% [binomial] Running Binomial Method... 58.0% [binomial] Running Binomial Method... 58.1% [binomial] Running Binomial Method... 58.2% [binomial] Running Binomial Method... 58.3% [binomial] Running Binomial Method... 58.4% [binomial] Running Binomial Method... 58.5% [binomial] Running Binomial Method... 58.5% [binomial] Running Binomial Method... 58.6% [binomial] Running Binomial Method... 58.7% [binomial] Running Binomial Method... 58.8% [binomial] Running Binomial Method... 58.9% [binomial] Running Binomial Method... 59.0% [binomial] Running Binomial Method... 59.1% [binomial] Running Binomial Method... 59.2% [binomial] Running Binomial Method... 59.3% [binomial] Running Binomial Method... 59.4% [binomial] Running Binomial Method... 59.5% [binomial] Running Binomial Method... 59.5% [binomial] Running Binomial Method... 59.6% [binomial] Running Binomial Method... 59.7% [binomial] Running Binomial Method... 59.8% [binomial] Running Binomial Method... 59.9% [binomial] Running Binomial Method... 60.0% [binomial] Running Binomial Method... 60.1% [binomial] Running Binomial Method... 60.2% [binomial] Running Binomial Method... 60.3% [binomial] Running Binomial Method... 60.4% [binomial] Running Binomial Method... 60.5% [binomial] Running Binomial Method... 60.5% [binomial] Running Binomial Method... 60.6% [binomial] Running Binomial Method... 60.7% [binomial] Running Binomial Method... 60.8% [binomial] Running Binomial Method... 60.9% [binomial] Running Binomial Method... 61.0% [binomial] Running Binomial Method... 61.1% [binomial] Running Binomial Method... 61.2% [binomial] Running Binomial Method... 61.3% [binomial] Running Binomial Method... 61.4% [binomial] Running Binomial Method... 61.5% [binomial] Running Binomial Method... 61.5% [binomial] Running Binomial Method... 61.6% [binomial] Running Binomial Method... 61.7% [binomial] Running Binomial Method... 61.8% [binomial] Running Binomial Method... 61.9% [binomial] Running Binomial Method... 62.0% [binomial] Running Binomial Method... 62.1% [binomial] Running Binomial Method... 62.2% [binomial] Running Binomial Method... 62.3% [binomial] Running Binomial Method... 62.4% [binomial] Running Binomial Method... 62.5% [binomial] Running Binomial Method... 62.5% [binomial] Running Binomial Method... 62.6% [binomial] Running Binomial Method... 62.7% [binomial] Running Binomial Method... 62.8% [binomial] Running Binomial Method... 62.9% [binomial] Running Binomial Method... 63.0% [binomial] Running Binomial Method... 63.1% [binomial] Running Binomial Method... 63.2% [binomial] Running Binomial Method... 63.3% [binomial] Running Binomial Method... 63.4% [binomial] Running Binomial Method... 63.5% [binomial] Running Binomial Method... 63.5% [binomial] Running Binomial Method... 63.6% [binomial] Running Binomial Method... 63.7% [binomial] Running Binomial Method... 63.8% [binomial] Running Binomial Method... 63.9% [binomial] Running Binomial Method... 64.0% [binomial] Running Binomial Method... 64.1% [binomial] Running Binomial Method... 64.2% [binomial] Running Binomial Method... 64.3% [binomial] Running Binomial Method... 64.4% [binomial] Running Binomial Method... 64.5% [binomial] Running Binomial Method... 64.5% [binomial] Running Binomial Method... 64.6% [binomial] Running Binomial Method... 64.7% [binomial] Running Binomial Method... 64.8% [binomial] Running Binomial Method... 64.9% [binomial] Running Binomial Method... 65.0% [binomial] Running Binomial Method... 65.1% [binomial] Running Binomial Method... 65.2% [binomial] Running Binomial Method... 65.3% [binomial] Running Binomial Method... 65.4% [binomial] Running Binomial Method... 65.5% [binomial] Running Binomial Method... 65.5% [binomial] Running Binomial Method... 65.6% [binomial] Running Binomial Method... 65.7% [binomial] Running Binomial Method... 65.8% [binomial] Running Binomial Method... 65.9% [binomial] Running Binomial Method... 66.0% [binomial] Running Binomial Method... 66.1% [binomial] Running Binomial Method... 66.2% [binomial] Running Binomial Method... 66.3% [binomial] Running Binomial Method... 66.4% [binomial] Running Binomial Method... 66.5% [binomial] Running Binomial Method... 66.5% [binomial] Running Binomial Method... 66.6% [binomial] Running Binomial Method... 66.7% [binomial] Running Binomial Method... 66.8% [binomial] Running Binomial Method... 66.9% [binomial] Running Binomial Method... 67.0% [binomial] Running Binomial Method... 67.1% [binomial] Running Binomial Method... 67.2% [binomial] Running Binomial Method... 67.3% [binomial] Running Binomial Method... 67.4% [binomial] Running Binomial Method... 67.5% [binomial] Running Binomial Method... 67.5% [binomial] Running Binomial Method... 67.6% [binomial] Running Binomial Method... 67.7% [binomial] Running Binomial Method... 67.8% [binomial] Running Binomial Method... 67.9% [binomial] Running Binomial Method... 68.0% [binomial] Running Binomial Method... 68.1% [binomial] Running Binomial Method... 68.2% [binomial] Running Binomial Method... 68.3% [binomial] Running Binomial Method... 68.4% [binomial] Running Binomial Method... 68.5% [binomial] Running Binomial Method... 68.5% [binomial] Running Binomial Method... 68.6% [binomial] Running Binomial Method... 68.7% [binomial] Running Binomial Method... 68.8% [binomial] Running Binomial Method... 68.9% [binomial] Running Binomial Method... 69.0% [binomial] Running Binomial Method... 69.1% [binomial] Running Binomial Method... 69.2% [binomial] Running Binomial Method... 69.3% [binomial] Running Binomial Method... 69.4% [binomial] Running Binomial Method... 69.5% [binomial] Running Binomial Method... 69.5% [binomial] Running Binomial Method... 69.6% [binomial] Running Binomial Method... 69.7% [binomial] Running Binomial Method... 69.8% [binomial] Running Binomial Method... 69.9% [binomial] Running Binomial Method... 70.0% [binomial] Running Binomial Method... 70.1% [binomial] Running Binomial Method... 70.2% [binomial] Running Binomial Method... 70.3% [binomial] Running Binomial Method... 70.4% [binomial] Running Binomial Method... 70.5% [binomial] Running Binomial Method... 70.5% [binomial] Running Binomial Method... 70.6% [binomial] Running Binomial Method... 70.7% [binomial] Running Binomial Method... 70.8% [binomial] Running Binomial Method... 70.9% [binomial] Running Binomial Method... 71.0% [binomial] Running Binomial Method... 71.1% [binomial] Running Binomial Method... 71.2% [binomial] Running Binomial Method... 71.3% [binomial] Running Binomial Method... 71.4% [binomial] Running Binomial Method... 71.5% [binomial] Running Binomial Method... 71.5% [binomial] Running Binomial Method... 71.6% [binomial] Running Binomial Method... 71.7% [binomial] Running Binomial Method... 71.8% [binomial] Running Binomial Method... 71.9% [binomial] Running Binomial Method... 72.0% [binomial] Running Binomial Method... 72.1% [binomial] Running Binomial Method... 72.2% [binomial] Running Binomial Method... 72.3% [binomial] Running Binomial Method... 72.4% [binomial] Running Binomial Method... 72.5% [binomial] Running Binomial Method... 72.5% [binomial] Running Binomial Method... 72.6% [binomial] Running Binomial Method... 72.7% [binomial] Running Binomial Method... 72.8% [binomial] Running Binomial Method... 72.9% [binomial] Running Binomial Method... 73.0% [binomial] Running Binomial Method... 73.1% [binomial] Running Binomial Method... 73.2% [binomial] Running Binomial Method... 73.3% [binomial] Running Binomial Method... 73.4% [binomial] Running Binomial Method... 73.5% [binomial] Running Binomial Method... 73.5% [binomial] Running Binomial Method... 73.6% [binomial] Running Binomial Method... 73.7% [binomial] Running Binomial Method... 73.8% [binomial] Running Binomial Method... 73.9% [binomial] Running Binomial Method... 74.0% [binomial] Running Binomial Method... 74.1% [binomial] Running Binomial Method... 74.2% [binomial] Running Binomial Method... 74.3% [binomial] Running Binomial Method... 74.4% [binomial] Running Binomial Method... 74.5% [binomial] Running Binomial Method... 74.5% [binomial] Running Binomial Method... 74.6% [binomial] Running Binomial Method... 74.7% [binomial] Running Binomial Method... 74.8% [binomial] Running Binomial Method... 74.9% [binomial] Running Binomial Method... 75.0% [binomial] Running Binomial Method... 75.1% [binomial] Running Binomial Method... 75.2% [binomial] Running Binomial Method... 75.3% [binomial] Running Binomial Method... 75.4% [binomial] Running Binomial Method... 75.5% [binomial] Running Binomial Method... 75.5% [binomial] Running Binomial Method... 75.6% [binomial] Running Binomial Method... 75.7% [binomial] Running Binomial Method... 75.8% [binomial] Running Binomial Method... 75.9% [binomial] Running Binomial Method... 76.0% [binomial] Running Binomial Method... 76.1% [binomial] Running Binomial Method... 76.2% [binomial] Running Binomial Method... 76.3% [binomial] Running Binomial Method... 76.4% [binomial] Running Binomial Method... 76.5% [binomial] Running Binomial Method... 76.5% [binomial] Running Binomial Method... 76.6% [binomial] Running Binomial Method... 76.7% [binomial] Running Binomial Method... 76.8% [binomial] Running Binomial Method... 76.9% [binomial] Running Binomial Method... 77.0% [binomial] Running Binomial Method... 77.1% [binomial] Running Binomial Method... 77.2% [binomial] Running Binomial Method... 77.3% [binomial] Running Binomial Method... 77.4% [binomial] Running Binomial Method... 77.5% [binomial] Running Binomial Method... 77.5% [binomial] Running Binomial Method... 77.6% [binomial] Running Binomial Method... 77.7% [binomial] Running Binomial Method... 77.8% [binomial] Running Binomial Method... 77.9% [binomial] Running Binomial Method... 78.0% [binomial] Running Binomial Method... 78.1% [binomial] Running Binomial Method... 78.2% [binomial] Running Binomial Method... 78.3% [binomial] Running Binomial Method... 78.4% [binomial] Running Binomial Method... 78.5% [binomial] Running Binomial Method... 78.5% [binomial] Running Binomial Method... 78.6% [binomial] Running Binomial Method... 78.7% [binomial] Running Binomial Method... 78.8% [binomial] Running Binomial Method... 78.9% [binomial] Running Binomial Method... 79.0% [binomial] Running Binomial Method... 79.1% [binomial] Running Binomial Method... 79.2% [binomial] Running Binomial Method... 79.3% [binomial] Running Binomial Method... 79.4% [binomial] Running Binomial Method... 79.5% [binomial] Running Binomial Method... 79.5% [binomial] Running Binomial Method... 79.6% [binomial] Running Binomial Method... 79.7% [binomial] Running Binomial Method... 79.8% [binomial] Running Binomial Method... 79.9% [binomial] Running Binomial Method... 80.0% [binomial] Running Binomial Method... 80.1% [binomial] Running Binomial Method... 80.2% [binomial] Running Binomial Method... 80.3% [binomial] Running Binomial Method... 80.4% [binomial] Running Binomial Method... 80.5% [binomial] Running Binomial Method... 80.5% [binomial] Running Binomial Method... 80.6% [binomial] Running Binomial Method... 80.7% [binomial] Running Binomial Method... 80.8% [binomial] Running Binomial Method... 80.9% [binomial] Running Binomial Method... 81.0% [binomial] Running Binomial Method... 81.1% [binomial] Running Binomial Method... 81.2% [binomial] Running Binomial Method... 81.3% [binomial] Running Binomial Method... 81.4% [binomial] Running Binomial Method... 81.5% [binomial] Running Binomial Method... 81.5% [binomial] Running Binomial Method... 81.6% [binomial] Running Binomial Method... 81.7% [binomial] Running Binomial Method... 81.8% [binomial] Running Binomial Method... 81.9% [binomial] Running Binomial Method... 82.0% [binomial] Running Binomial Method... 82.1% [binomial] Running Binomial Method... 82.2% [binomial] Running Binomial Method... 82.3% [binomial] Running Binomial Method... 82.4% [binomial] Running Binomial Method... 82.5% [binomial] Running Binomial Method... 82.5% [binomial] Running Binomial Method... 82.6% [binomial] Running Binomial Method... 82.7% [binomial] Running Binomial Method... 82.8% [binomial] Running Binomial Method... 82.9% [binomial] Running Binomial Method... 83.0% [binomial] Running Binomial Method... 83.1% [binomial] Running Binomial Method... 83.2% [binomial] Running Binomial Method... 83.3% [binomial] Running Binomial Method... 83.4% [binomial] Running Binomial Method... 83.5% [binomial] Running Binomial Method... 83.5% [binomial] Running Binomial Method... 83.6% [binomial] Running Binomial Method... 83.7% [binomial] Running Binomial Method... 83.8% [binomial] Running Binomial Method... 83.9% [binomial] Running Binomial Method... 84.0% [binomial] Running Binomial Method... 84.1% [binomial] Running Binomial Method... 84.2% [binomial] Running Binomial Method... 84.3% [binomial] Running Binomial Method... 84.4% [binomial] Running Binomial Method... 84.5% [binomial] Running Binomial Method... 84.5% [binomial] Running Binomial Method... 84.6% [binomial] Running Binomial Method... 84.7% [binomial] Running Binomial Method... 84.8% [binomial] Running Binomial Method... 84.9% [binomial] Running Binomial Method... 85.0% [binomial] Running Binomial Method... 85.1% [binomial] Running Binomial Method... 85.2% [binomial] Running Binomial Method... 85.3% [binomial] Running Binomial Method... 85.4% [binomial] Running Binomial Method... 85.5% [binomial] Running Binomial Method... 85.5% [binomial] Running Binomial Method... 85.6% [binomial] Running Binomial Method... 85.7% [binomial] Running Binomial Method... 85.8% [binomial] Running Binomial Method... 85.9% [binomial] Running Binomial Method... 86.0% [binomial] Running Binomial Method... 86.1% [binomial] Running Binomial Method... 86.2% [binomial] Running Binomial Method... 86.3% [binomial] Running Binomial Method... 86.4% [binomial] Running Binomial Method... 86.5% [binomial] Running Binomial Method... 86.5% [binomial] Running Binomial Method... 86.6% [binomial] Running Binomial Method... 86.7% [binomial] Running Binomial Method... 86.8% [binomial] Running Binomial Method... 86.9% [binomial] Running Binomial Method... 87.0% [binomial] Running Binomial Method... 87.1% [binomial] Running Binomial Method... 87.2% [binomial] Running Binomial Method... 87.3% [binomial] Running Binomial Method... 87.4% [binomial] Running Binomial Method... 87.5% [binomial] Running Binomial Method... 87.5% [binomial] Running Binomial Method... 87.6% [binomial] Running Binomial Method... 87.7% [binomial] Running Binomial Method... 87.8% [binomial] Running Binomial Method... 87.9% [binomial] Running Binomial Method... 88.0% [binomial] Running Binomial Method... 88.1% [binomial] Running Binomial Method... 88.2% [binomial] Running Binomial Method... 88.3% [binomial] Running Binomial Method... 88.4% [binomial] Running Binomial Method... 88.5% [binomial] Running Binomial Method... 88.5% [binomial] Running Binomial Method... 88.6% [binomial] Running Binomial Method... 88.7% [binomial] Running Binomial Method... 88.8% [binomial] Running Binomial Method... 88.9% [binomial] Running Binomial Method... 89.0% [binomial] Running Binomial Method... 89.1% [binomial] Running Binomial Method... 89.2% [binomial] Running Binomial Method... 89.3% [binomial] Running Binomial Method... 89.4% [binomial] Running Binomial Method... 89.5% [binomial] Running Binomial Method... 89.5% [binomial] Running Binomial Method... 89.6% [binomial] Running Binomial Method... 89.7% [binomial] Running Binomial Method... 89.8% [binomial] Running Binomial Method... 89.9% [binomial] Running Binomial Method... 90.0% [binomial] Running Binomial Method... 90.1% [binomial] Running Binomial Method... 90.2% [binomial] Running Binomial Method... 90.3% [binomial] Running Binomial Method... 90.4% [binomial] Running Binomial Method... 90.5% [binomial] Running Binomial Method... 90.5% [binomial] Running Binomial Method... 90.6% [binomial] Running Binomial Method... 90.7% [binomial] Running Binomial Method... 90.8% [binomial] Running Binomial Method... 90.9% [binomial] Running Binomial Method... 91.0% [binomial] Running Binomial Method... 91.1% [binomial] Running Binomial Method... 91.2% [binomial] Running Binomial Method... 91.3% [binomial] Running Binomial Method... 91.4% [binomial] Running Binomial Method... 91.5% [binomial] Running Binomial Method... 91.5% [binomial] Running Binomial Method... 91.6% [binomial] Running Binomial Method... 91.7% [binomial] Running Binomial Method... 91.8% [binomial] Running Binomial Method... 91.9% [binomial] Running Binomial Method... 92.0% [binomial] Running Binomial Method... 92.1% [binomial] Running Binomial Method... 92.2% [binomial] Running Binomial Method... 92.3% [binomial] Running Binomial Method... 92.4% [binomial] Running Binomial Method... 92.5% [binomial] Running Binomial Method... 92.5% [binomial] Running Binomial Method... 92.6% [binomial] Running Binomial Method... 92.7% [binomial] Running Binomial Method... 92.8% [binomial] Running Binomial Method... 92.9% [binomial] Running Binomial Method... 93.0% [binomial] Running Binomial Method... 93.1% [binomial] Running Binomial Method... 93.2% [binomial] Running Binomial Method... 93.3% [binomial] Running Binomial Method... 93.4% [binomial] Running Binomial Method... 93.5% [binomial] Running Binomial Method... 93.5% [binomial] Running Binomial Method... 93.6% [binomial] Running Binomial Method... 93.7% [binomial] Running Binomial Method... 93.8% [binomial] Running Binomial Method... 93.9% [binomial] Running Binomial Method... 94.0% [binomial] Running Binomial Method... 94.1% [binomial] Running Binomial Method... 94.2% [binomial] Running Binomial Method... 94.3% [binomial] Running Binomial Method... 94.4% [binomial] Running Binomial Method... 94.5% [binomial] Running Binomial Method... 94.5% [binomial] Running Binomial Method... 94.6% [binomial] Running Binomial Method... 94.7% [binomial] Running Binomial Method... 94.8% [binomial] Running Binomial Method... 94.9% [binomial] Running Binomial Method... 95.0% [binomial] Running Binomial Method... 95.1% [binomial] Running Binomial Method... 95.2% [binomial] Running Binomial Method... 95.3% [binomial] Running Binomial Method... 95.4% [binomial] Running Binomial Method... 95.5% [binomial] Running Binomial Method... 95.5% [binomial] Running Binomial Method... 95.6% [binomial] Running Binomial Method... 95.7% [binomial] Running Binomial Method... 95.8% [binomial] Running Binomial Method... 95.9% [binomial] Running Binomial Method... 96.0% [binomial] Running Binomial Method... 96.1% [binomial] Running Binomial Method... 96.2% [binomial] Running Binomial Method... 96.3% [binomial] Running Binomial Method... 96.4% [binomial] Running Binomial Method... 96.5% [binomial] Running Binomial Method... 96.5% [binomial] Running Binomial Method... 96.6% [binomial] Running Binomial Method... 96.7% [binomial] Running Binomial Method... 96.8% [binomial] Running Binomial Method... 96.9% [binomial] Running Binomial Method... 97.0% [binomial] Running Binomial Method... 97.1% [binomial] Running Binomial Method... 97.2% [binomial] Running Binomial Method... 97.3% [binomial] Running Binomial Method... 97.4% [binomial] Running Binomial Method... 97.5% [binomial] Running Binomial Method... 97.5% [binomial] Running Binomial Method... 97.6% [binomial] Running Binomial Method... 97.7% [binomial] Running Binomial Method... 97.8% [binomial] Running Binomial Method... 97.9% [binomial] Running Binomial Method... 98.0% [binomial] Running Binomial Method... 98.1% [binomial] Running Binomial Method... 98.2% [binomial] Running Binomial Method... 98.3% [binomial] Running Binomial Method... 98.4% [binomial] Running Binomial Method... 98.5% [binomial] Running Binomial Method... 98.5% [binomial] Running Binomial Method... 98.6% [binomial] Running Binomial Method... 98.7% [binomial] Running Binomial Method... 98.8% [binomial] Running Binomial Method... 98.9% [binomial] Running Binomial Method... 99.0% [binomial] Running Binomial Method... 99.1% [binomial] Running Binomial Method... 99.2% [binomial] Running Binomial Method... 99.3% [binomial] Running Binomial Method... 99.4% [binomial] Running Binomial Method... 99.5% [binomial] Running Binomial Method... 99.5% [binomial] Running Binomial Method... 99.6% [binomial] Running Binomial Method... 99.7% [binomial] Running Binomial Method... 99.8% [binomial] Running Binomial Method... 99.9% [binomial] Running Binomial Method... 100.0% ok test_GI (tests.test_analysis_methods.TestMethods) ... /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:910: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/../src/pytransit/data/cholesterol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:910: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/../src/pytransit/data/cholesterol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:910: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/../src/pytransit/data/cholesterol_H37Rv_rep3.wig' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:927: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/../src/pytransit/data/cholesterol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:927: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/../src/pytransit/data/cholesterol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:927: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/../src/pytransit/data/cholesterol_H37Rv_rep3.wig' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback [binomial] [binomial] Adding File: /build/tnseq-transit-3.2.1/tests/testoutput.txt [binomial] Finished Binomial Method Removing output file... #################### tests.test_analysis_methods.TestMethods.test_GI #################### [gi] Starting Genetic Interactions Method [gi] Getting Data [gi] Normalizing using: TTR [gi] Running GI Method... 2% [gi] Running Export Method... 0.0% [gi] Running GI Method... 4% [gi] Running Export Method... 2.0% [gi] Running GI Method... 6% [gi] Running Export Method... 4.0% [gi] Running GI Method... 8% [gi] Running Export Method... 6.0% [gi] Running GI Method... 10% [gi] Running Export Method... 8.0% [gi] Running GI Method... 12% [gi] Running Export Method... 10.0% [gi] Running GI Method... 14% [gi] Running Export Method... 12.0% [gi] Running GI Method... 16% [gi] Running Export Method... 14.0% [gi] Running GI Method... 18% [gi] Running Export Method... 16.0% [gi] Running GI Method... 20% [gi] Running Export Method... 18.0% [gi] Running GI Method... 22% [gi] Running Export Method... 20.0% [gi] Running GI Method... 24% [gi] Running Export Method... 22.0% [gi] Running GI Method... 25% [gi] Running Export Method... 24.0% [gi] Running GI Method... 27% [gi] Running Export Method... 26.0% [gi] Running GI Method... 29% [gi] Running Export Method... 28.0% [gi] Running GI Method... 31% [gi] Running Export Method... 30.0% [gi] Running GI Method... 33% [gi] Running Export Method... 32.0% [gi] Running GI Method... 35% [gi] Running Export Method... 34.0% [gi] Running GI Method... 37% [gi] Running Export Method... 36.0% [gi] Running GI Method... 39% [gi] Running Export Method... 38.0% [gi] Running GI Method... 41% [gi] Running Export Method... 40.0% [gi] Running GI Method... 43% [gi] Running Export Method... 42.0% [gi] Running GI Method... 45% [gi] Running Export Method... 44.0% [gi] Running GI Method... 47% [gi] Running Export Method... 46.0% [gi] Running GI Method... 49% [gi] Running Export Method... 48.0% [gi] Running GI Method... 51% [gi] Running Export Method... 50.0% [gi] Running GI Method... 53% [gi] Running Export Method... 52.0% [gi] Running GI Method... 55% [gi] Running Export Method... 54.0% [gi] Running GI Method... 57% [gi] Running Export Method... 56.0% [gi] Running GI Method... 59% [gi] Running Export Method... 58.0% [gi] Running GI Method... 61% [gi] Running Export Method... 60.0% [gi] Running GI Method... 63% [gi] Running Export Method... 62.0% [gi] Running GI Method... 65% [gi] Running Export Method... 64.0% [gi] Running GI Method... 67% [gi] Running Export Method... 66.0% [gi] Running GI Method... 69% [gi] Running Export Method... 68.0% [gi] Running GI Method... 71% [gi] Running Export Method... 70.0% [gi] Running GI Method... 73% [gi] Running Export Method... 72.0% [gi] Running GI Method... 75% [gi] Running Export Method... 74.0% [gi] Running GI Method... 76% [gi] Running Export Method... 76.0% [gi] Running GI Method... 78% [gi] Running Export Method... 78.0% [gi] Running GI Method... 80% [gi] Running Export Method... 80.0% [gi] Running GI Method... 82% [gi] Running Export Method... 82.0% [gi] Running GI Method... 84% [gi] Running Export Method... 84.0% [gi] Running GI Method... 86% [gi] Running Export Method... 86.0% [gi] Running GI Method... 88% [gi] Running Export Method... 88.0% [gi] Running GI Method... 90% [gi] Running Export Method... 90.0% [gi] Running GI Method... 92% [gi] Running Export Method... 92.0% [gi] Running GI Method... 94% [gi] Running Export Method... 94.0% [gi] Running GI Method... 96% [gi] Running Export Method... 96.0% [gi] Running GI Method... 98% [gi] Running Export Method... 98.0% [gi] Running GI Method... 100% [gi] Running Export Method... 100.0% /usr/lib/python3.9/unittest/case.py:550: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/testoutput.txt' mode='w' encoding='UTF-8'> method() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_Griffin (tests.test_analysis_methods.TestMethods) ... [gi] Adding File: /build/tnseq-transit-3.2.1/tests/testoutput.txt [gi] Finished Genetic Interactions Method Removing output file... #################### tests.test_analysis_methods.TestMethods.test_Griffin #################### [griffin] Starting Griffin Method [griffin] Getting Data [griffin] Running Griffin Method... 2.0% [griffin] Running Griffin Method... 3.9% [griffin] Running Griffin Method... 5.9% [griffin] Running Griffin Method... 7.8% [griffin] Running Griffin Method... 9.8% [griffin] Running Griffin Method... 11.8% [griffin] Running Griffin Method... 13.7% [griffin] Running Griffin Method... 15.7% [griffin] Running Griffin Method... 17.6% [griffin] Running Griffin Method... 19.6% [griffin] Running Griffin Method... 21.6% [griffin] Running Griffin Method... 23.5% [griffin] Running Griffin Method... 25.5% [griffin] Running Griffin Method... 27.5% [griffin] Running Griffin Method... 29.4% [griffin] Running Griffin Method... 31.4% [griffin] Running Griffin Method... 33.3% [griffin] Running Griffin Method... 35.3% [griffin] Running Griffin Method... 37.3% [griffin] Running Griffin Method... 39.2% [griffin] Running Griffin Method... 41.2% [griffin] Running Griffin Method... 43.1% [griffin] Running Griffin Method... 45.1% [griffin] Running Griffin Method... 47.1% [griffin] Running Griffin Method... 49.0% [griffin] Running Griffin Method... 51.0% [griffin] Running Griffin Method... 52.9% [griffin] Running Griffin Method... 54.9% [griffin] Running Griffin Method... 56.9% [griffin] Running Griffin Method... 58.8% [griffin] Running Griffin Method... 60.8% [griffin] Running Griffin Method... 62.7% [griffin] Running Griffin Method... 64.7% [griffin] Running Griffin Method... 66.7% [griffin] Running Griffin Method... 68.6% [griffin] Running Griffin Method... 70.6% [griffin] Running Griffin Method... 72.5% [griffin] Running Griffin Method... 74.5% [griffin] Running Griffin Method... 76.5% [griffin] Running Griffin Method... 78.4% [griffin] Running Griffin Method... 80.4% [griffin] Running Griffin Method... 82.4% [griffin] Running Griffin Method... 84.3% [griffin] Running Griffin Method... 86.3% [griffin] Running Griffin Method... 88.2% [griffin] Running Griffin Method... 90.2% [griffin] Running Griffin Method... 92.2% [griffin] Running Griffin Method... 94.1% [griffin] Running Griffin Method... 96.1% [griffin] Running Griffin Method... 98.0% [griffin] Running Griffin Method... 100.0% ok test_Gumbel (tests.test_analysis_methods.TestMethods) ... /build/tnseq-transit-3.2.1/tests/../src/pytransit/analysis/gumbel.py:498: DeprecationWarning: scipy.exp is deprecated and will be removed in SciPy 2.0.0, use numpy.exp instead pval = 1 - scipy.exp(scipy.stats.gumbel_r.logcdf(r,u,B)) /build/tnseq-transit-3.2.1/tests/../src/pytransit/analysis/gumbel.py:522: DeprecationWarning: scipy.exp is deprecated and will be removed in SciPy 2.0.0, use numpy.exp instead h0 = ((scipy.exp(scipy.stats.gumbel_r.logpdf(R,mu,sigma))) * scipy.stats.norm.pdf(S, mu_s*R, sigma_s) * (1-w1)) [griffin] [griffin] Adding File: /build/tnseq-transit-3.2.1/tests/testoutput.txt [griffin] Finished Griffin Method Removing output file... #################### tests.test_analysis_methods.TestMethods.test_Gumbel #################### [gumbel] Reading Annotation [gumbel] Getting Data [gumbel] Doing Regression [gumbel] Setting Initial Class [gumbel] Running Gumbel Method... 0.2% [gumbel] Running Gumbel Method... 0.3% [gumbel] Running Gumbel Method... 0.4% [gumbel] Running Gumbel Method... 0.5% [gumbel] Running Gumbel Method... 0.5% [gumbel] Running Gumbel Method... 0.6% [gumbel] Running Gumbel Method... 0.7% [gumbel] Running Gumbel Method... 0.8% [gumbel] Running Gumbel Method... 0.9% [gumbel] Running Gumbel Method... 1.0% [gumbel] Running Gumbel Method... 1.1% [gumbel] Running Gumbel Method... 1.2% [gumbel] Running Gumbel Method... 1.3% [gumbel] Running Gumbel Method... 1.4% [gumbel] Running Gumbel Method... 1.5% [gumbel] Running Gumbel Method... 1.5% [gumbel] Running Gumbel Method... 1.6% [gumbel] Running Gumbel Method... 1.7% [gumbel] Running Gumbel Method... 1.8% [gumbel] Running Gumbel Method... 1.9% [gumbel] Running Gumbel Method... 2.0% [gumbel] Running Gumbel Method... 2.1% [gumbel] Running Gumbel Method... 2.2% [gumbel] Running Gumbel Method... 2.3% [gumbel] Running Gumbel Method... 2.4% [gumbel] Running Gumbel Method... 2.5% [gumbel] Running Gumbel Method... 2.5% [gumbel] Running Gumbel Method... 2.6% [gumbel] Running Gumbel Method... 2.7% [gumbel] Running Gumbel Method... 2.8% [gumbel] Running Gumbel Method... 2.9% [gumbel] Running Gumbel Method... 3.0% [gumbel] Running Gumbel Method... 3.1% [gumbel] Running Gumbel Method... 3.2% [gumbel] Running Gumbel Method... 3.3% [gumbel] Running Gumbel Method... 3.4% [gumbel] Running Gumbel Method... 3.5% [gumbel] Running Gumbel Method... 3.5% [gumbel] Running Gumbel Method... 3.6% [gumbel] Running Gumbel Method... 3.7% [gumbel] Running Gumbel Method... 3.8% [gumbel] Running Gumbel Method... 3.9% [gumbel] Running Gumbel Method... 4.0% [gumbel] Running Gumbel Method... 4.1% [gumbel] Running Gumbel Method... 4.2% [gumbel] Running Gumbel Method... 4.3% [gumbel] Running Gumbel Method... 4.4% [gumbel] Running Gumbel Method... 4.5% [gumbel] Running Gumbel Method... 4.5% [gumbel] Running Gumbel Method... 4.6% [gumbel] Running Gumbel Method... 4.7% [gumbel] Running Gumbel Method... 4.8% [gumbel] Running Gumbel Method... 4.9% [gumbel] Running Gumbel Method... 5.0% [gumbel] Running Gumbel Method... 5.1% [gumbel] Running Gumbel Method... 5.2% [gumbel] Running Gumbel Method... 5.3% [gumbel] Running Gumbel Method... 5.4% [gumbel] Running Gumbel Method... 5.5% [gumbel] Running Gumbel Method... 5.5% [gumbel] Running Gumbel Method... 5.6% [gumbel] Running Gumbel Method... 5.7% [gumbel] Running Gumbel Method... 5.8% [gumbel] Running Gumbel Method... 5.9% [gumbel] Running Gumbel Method... 6.0% [gumbel] Running Gumbel Method... 6.1% [gumbel] Running Gumbel Method... 6.2% [gumbel] Running Gumbel Method... 6.3% [gumbel] Running Gumbel Method... 6.4% [gumbel] Running Gumbel Method... 6.5% [gumbel] Running Gumbel Method... 6.5% [gumbel] Running Gumbel Method... 6.6% [gumbel] Running Gumbel Method... 6.7% [gumbel] Running Gumbel Method... 6.8% [gumbel] Running Gumbel Method... 6.9% [gumbel] Running Gumbel Method... 7.0% [gumbel] Running Gumbel Method... 7.1% [gumbel] Running Gumbel Method... 7.2% [gumbel] Running Gumbel Method... 7.3% [gumbel] Running Gumbel Method... 7.4% [gumbel] Running Gumbel Method... 7.5% [gumbel] Running Gumbel Method... 7.5% [gumbel] Running Gumbel Method... 7.6% [gumbel] Running Gumbel Method... 7.7% [gumbel] Running Gumbel Method... 7.8% [gumbel] Running Gumbel Method... 7.9% [gumbel] Running Gumbel Method... 8.0% [gumbel] Running Gumbel Method... 8.1% [gumbel] Running Gumbel Method... 8.2% [gumbel] Running Gumbel Method... 8.3% [gumbel] Running Gumbel Method... 8.4% [gumbel] Running Gumbel Method... 8.5% [gumbel] Running Gumbel Method... 8.5% [gumbel] Running Gumbel Method... 8.6% [gumbel] Running Gumbel Method... 8.7% [gumbel] Running Gumbel Method... 8.8% [gumbel] Running Gumbel Method... 8.9% [gumbel] Running Gumbel Method... 9.0% [gumbel] Running Gumbel Method... 9.1% [gumbel] Running Gumbel Method... 9.2% [gumbel] Running Gumbel Method... 9.3% [gumbel] Running Gumbel Method... 9.4% [gumbel] Running Gumbel Method... 9.5% [gumbel] Running Gumbel Method... 9.5% [gumbel] Running Gumbel Method... 9.6% [gumbel] Running Gumbel Method... 9.7% [gumbel] Running Gumbel Method... 9.8% [gumbel] Running Gumbel Method... 9.9% [gumbel] Running Gumbel Method... 10.0% [gumbel] Running Gumbel Method... 10.1% [gumbel] Running Gumbel Method... 10.2% [gumbel] Running Gumbel Method... 10.3% [gumbel] Running Gumbel Method... 10.4% [gumbel] Running Gumbel Method... 10.5% [gumbel] Running Gumbel Method... 10.5% [gumbel] Running Gumbel Method... 10.6% [gumbel] Running Gumbel Method... 10.7% [gumbel] Running Gumbel Method... 10.8% [gumbel] Running Gumbel Method... 10.9% [gumbel] Running Gumbel Method... 11.0% [gumbel] Running Gumbel Method... 11.1% [gumbel] Running Gumbel Method... 11.2% [gumbel] Running Gumbel Method... 11.3% [gumbel] Running Gumbel Method... 11.4% [gumbel] Running Gumbel Method... 11.5% [gumbel] Running Gumbel Method... 11.5% [gumbel] Running Gumbel Method... 11.6% [gumbel] Running Gumbel Method... 11.7% [gumbel] Running Gumbel Method... 11.8% [gumbel] Running Gumbel Method... 11.9% [gumbel] Running Gumbel Method... 12.0% [gumbel] Running Gumbel Method... 12.1% [gumbel] Running Gumbel Method... 12.2% [gumbel] Running Gumbel Method... 12.3% [gumbel] Running Gumbel Method... 12.4% [gumbel] Running Gumbel Method... 12.5% [gumbel] Running Gumbel Method... 12.5% [gumbel] Running Gumbel Method... 12.6% [gumbel] Running Gumbel Method... 12.7% [gumbel] Running Gumbel Method... 12.8% [gumbel] Running Gumbel Method... 12.9% [gumbel] Running Gumbel Method... 13.0% [gumbel] Running Gumbel Method... 13.1% [gumbel] Running Gumbel Method... 13.2% [gumbel] Running Gumbel Method... 13.3% [gumbel] Running Gumbel Method... 13.4% [gumbel] Running Gumbel Method... 13.5% [gumbel] Running Gumbel Method... 13.5% [gumbel] Running Gumbel Method... 13.6% [gumbel] Running Gumbel Method... 13.7% [gumbel] Running Gumbel Method... 13.8% [gumbel] Running Gumbel Method... 13.9% [gumbel] Running Gumbel Method... 14.0% [gumbel] Running Gumbel Method... 14.1% [gumbel] Running Gumbel Method... 14.2% [gumbel] Running Gumbel Method... 14.3% [gumbel] Running Gumbel Method... 14.4% [gumbel] Running Gumbel Method... 14.5% [gumbel] Running Gumbel Method... 14.5% [gumbel] Running Gumbel Method... 14.6% [gumbel] Running Gumbel Method... 14.7% [gumbel] Running Gumbel Method... 14.8% [gumbel] Running Gumbel Method... 14.9% [gumbel] Running Gumbel Method... 15.0% [gumbel] Running Gumbel Method... 15.1% [gumbel] Running Gumbel Method... 15.2% [gumbel] Running Gumbel Method... 15.3% [gumbel] Running Gumbel Method... 15.4% [gumbel] Running Gumbel Method... 15.5% [gumbel] Running Gumbel Method... 15.5% [gumbel] Running Gumbel Method... 15.6% [gumbel] Running Gumbel Method... 15.7% [gumbel] Running Gumbel Method... 15.8% [gumbel] Running Gumbel Method... 15.9% [gumbel] Running Gumbel Method... 16.0% [gumbel] Running Gumbel Method... 16.1% [gumbel] Running Gumbel Method... 16.2% [gumbel] Running Gumbel Method... 16.3% [gumbel] Running Gumbel Method... 16.4% [gumbel] Running Gumbel Method... 16.5% [gumbel] Running Gumbel Method... 16.5% [gumbel] Running Gumbel Method... 16.6% [gumbel] Running Gumbel Method... 16.7% [gumbel] Running Gumbel Method... 16.8% [gumbel] Running Gumbel Method... 16.9% [gumbel] Running Gumbel Method... 17.0% [gumbel] Running Gumbel Method... 17.1% [gumbel] Running Gumbel Method... 17.2% [gumbel] Running Gumbel Method... 17.3% [gumbel] Running Gumbel Method... 17.4% [gumbel] Running Gumbel Method... 17.5% [gumbel] Running Gumbel Method... 17.5% [gumbel] Running Gumbel Method... 17.6% [gumbel] Running Gumbel Method... 17.7% [gumbel] Running Gumbel Method... 17.8% [gumbel] Running Gumbel Method... 17.9% [gumbel] Running Gumbel Method... 18.0% [gumbel] Running Gumbel Method... 18.1% [gumbel] Running Gumbel Method... 18.2% [gumbel] Running Gumbel Method... 18.3% [gumbel] Running Gumbel Method... 18.4% [gumbel] Running Gumbel Method... 18.5% [gumbel] Running Gumbel Method... 18.5% [gumbel] Running Gumbel Method... 18.6% [gumbel] Running Gumbel Method... 18.7% [gumbel] Running Gumbel Method... 18.8% [gumbel] Running Gumbel Method... 18.9% [gumbel] Running Gumbel Method... 19.0% [gumbel] Running Gumbel Method... 19.1% [gumbel] Running Gumbel Method... 19.2% [gumbel] Running Gumbel Method... 19.3% [gumbel] Running Gumbel Method... 19.4% [gumbel] Running Gumbel Method... 19.5% [gumbel] Running Gumbel Method... 19.5% [gumbel] Running Gumbel Method... 19.6% [gumbel] Running Gumbel Method... 19.7% [gumbel] Running Gumbel Method... 19.8% [gumbel] Running Gumbel Method... 19.9% [gumbel] Running Gumbel Method... 20.0% [gumbel] Running Gumbel Method... 20.1% [gumbel] Running Gumbel Method... 20.2% [gumbel] Running Gumbel Method... 20.3% [gumbel] Running Gumbel Method... 20.4% [gumbel] Running Gumbel Method... 20.5% [gumbel] Running Gumbel Method... 20.5% [gumbel] Running Gumbel Method... 20.6% [gumbel] Running Gumbel Method... 20.7% [gumbel] Running Gumbel Method... 20.8% [gumbel] Running Gumbel Method... 20.9% [gumbel] Running Gumbel Method... 21.0% [gumbel] Running Gumbel Method... 21.1% [gumbel] Running Gumbel Method... 21.2% [gumbel] Running Gumbel Method... 21.3% [gumbel] Running Gumbel Method... 21.4% [gumbel] Running Gumbel Method... 21.5% [gumbel] Running Gumbel Method... 21.5% [gumbel] Running Gumbel Method... 21.6% [gumbel] Running Gumbel Method... 21.7% [gumbel] Running Gumbel Method... 21.8% [gumbel] Running Gumbel Method... 21.9% [gumbel] Running Gumbel Method... 22.0% [gumbel] Running Gumbel Method... 22.1% [gumbel] Running Gumbel Method... 22.2% [gumbel] Running Gumbel Method... 22.3% [gumbel] Running Gumbel Method... 22.4% [gumbel] Running Gumbel Method... 22.5% [gumbel] Running Gumbel Method... 22.5% [gumbel] Running Gumbel Method... 22.6% [gumbel] Running Gumbel Method... 22.7% [gumbel] Running Gumbel Method... 22.8% [gumbel] Running Gumbel Method... 22.9% [gumbel] Running Gumbel Method... 23.0% [gumbel] Running Gumbel Method... 23.1% [gumbel] Running Gumbel Method... 23.2% [gumbel] Running Gumbel Method... 23.3% [gumbel] Running Gumbel Method... 23.4% [gumbel] Running Gumbel Method... 23.5% [gumbel] Running Gumbel Method... 23.5% [gumbel] Running Gumbel Method... 23.6% [gumbel] Running Gumbel Method... 23.7% [gumbel] Running Gumbel Method... 23.8% [gumbel] Running Gumbel Method... 23.9% [gumbel] Running Gumbel Method... 24.0% [gumbel] Running Gumbel Method... 24.1% [gumbel] Running Gumbel Method... 24.2% [gumbel] Running Gumbel Method... 24.3% [gumbel] Running Gumbel Method... 24.4% [gumbel] Running Gumbel Method... 24.5% [gumbel] Running Gumbel Method... 24.5% [gumbel] Running Gumbel Method... 24.6% [gumbel] Running Gumbel Method... 24.7% [gumbel] Running Gumbel Method... 24.8% [gumbel] Running Gumbel Method... 24.9% [gumbel] Running Gumbel Method... 25.0% [gumbel] Running Gumbel Method... 25.1% [gumbel] Running Gumbel Method... 25.2% [gumbel] Running Gumbel Method... 25.3% [gumbel] Running Gumbel Method... 25.4% [gumbel] Running Gumbel Method... 25.5% [gumbel] Running Gumbel Method... 25.5% [gumbel] Running Gumbel Method... 25.6% [gumbel] Running Gumbel Method... 25.7% [gumbel] Running Gumbel Method... 25.8% [gumbel] Running Gumbel Method... 25.9% [gumbel] Running Gumbel Method... 26.0% [gumbel] Running Gumbel Method... 26.1% [gumbel] Running Gumbel Method... 26.2% [gumbel] Running Gumbel Method... 26.3% [gumbel] Running Gumbel Method... 26.4% [gumbel] Running Gumbel Method... 26.5% [gumbel] Running Gumbel Method... 26.5% [gumbel] Running Gumbel Method... 26.6% [gumbel] Running Gumbel Method... 26.7% [gumbel] Running Gumbel Method... 26.8% [gumbel] Running Gumbel Method... 26.9% [gumbel] Running Gumbel Method... 27.0% [gumbel] Running Gumbel Method... 27.1% [gumbel] Running Gumbel Method... 27.2% [gumbel] Running Gumbel Method... 27.3% [gumbel] Running Gumbel Method... 27.4% [gumbel] Running Gumbel Method... 27.5% [gumbel] Running Gumbel Method... 27.5% [gumbel] Running Gumbel Method... 27.6% [gumbel] Running Gumbel Method... 27.7% [gumbel] Running Gumbel Method... 27.8% [gumbel] Running Gumbel Method... 27.9% [gumbel] Running Gumbel Method... 28.0% [gumbel] Running Gumbel Method... 28.1% [gumbel] Running Gumbel Method... 28.2% [gumbel] Running Gumbel Method... 28.3% [gumbel] Running Gumbel Method... 28.4% [gumbel] Running Gumbel Method... 28.5% [gumbel] Running Gumbel Method... 28.5% [gumbel] Running Gumbel Method... 28.6% [gumbel] Running Gumbel Method... 28.7% [gumbel] Running Gumbel Method... 28.8% [gumbel] Running Gumbel Method... 28.9% [gumbel] Running Gumbel Method... 29.0% [gumbel] Running Gumbel Method... 29.1% [gumbel] Running Gumbel Method... 29.2% [gumbel] Running Gumbel Method... 29.3% [gumbel] Running Gumbel Method... 29.4% [gumbel] Running Gumbel Method... 29.5% [gumbel] Running Gumbel Method... 29.5% [gumbel] Running Gumbel Method... 29.6% [gumbel] Running Gumbel Method... 29.7% [gumbel] Running Gumbel Method... 29.8% [gumbel] Running Gumbel Method... 29.9% [gumbel] Running Gumbel Method... 30.0% [gumbel] Running Gumbel Method... 30.1% [gumbel] Running Gumbel Method... 30.2% [gumbel] Running Gumbel Method... 30.3% [gumbel] Running Gumbel Method... 30.4% [gumbel] Running Gumbel Method... 30.5% [gumbel] Running Gumbel Method... 30.5% [gumbel] Running Gumbel Method... 30.6% [gumbel] Running Gumbel Method... 30.7% [gumbel] Running Gumbel Method... 30.8% [gumbel] Running Gumbel Method... 30.9% [gumbel] Running Gumbel Method... 31.0% [gumbel] Running Gumbel Method... 31.1% [gumbel] Running Gumbel Method... 31.2% [gumbel] Running Gumbel Method... 31.3% [gumbel] Running Gumbel Method... 31.4% [gumbel] Running Gumbel Method... 31.5% [gumbel] Running Gumbel Method... 31.5% [gumbel] Running Gumbel Method... 31.6% [gumbel] Running Gumbel Method... 31.7% [gumbel] Running Gumbel Method... 31.8% [gumbel] Running Gumbel Method... 31.9% [gumbel] Running Gumbel Method... 32.0% [gumbel] Running Gumbel Method... 32.1% [gumbel] Running Gumbel Method... 32.2% [gumbel] Running Gumbel Method... 32.3% [gumbel] Running Gumbel Method... 32.4% [gumbel] Running Gumbel Method... 32.5% [gumbel] Running Gumbel Method... 32.5% [gumbel] Running Gumbel Method... 32.6% [gumbel] Running Gumbel Method... 32.7% [gumbel] Running Gumbel Method... 32.8% [gumbel] Running Gumbel Method... 32.9% [gumbel] Running Gumbel Method... 33.0% [gumbel] Running Gumbel Method... 33.1% [gumbel] Running Gumbel Method... 33.2% [gumbel] Running Gumbel Method... 33.3% [gumbel] Running Gumbel Method... 33.4% [gumbel] Running Gumbel Method... 33.5% [gumbel] Running Gumbel Method... 33.5% [gumbel] Running Gumbel Method... 33.6% [gumbel] Running Gumbel Method... 33.7% [gumbel] Running Gumbel Method... 33.8% [gumbel] Running Gumbel Method... 33.9% [gumbel] Running Gumbel Method... 34.0% [gumbel] Running Gumbel Method... 34.1% [gumbel] Running Gumbel Method... 34.2% [gumbel] Running Gumbel Method... 34.3% [gumbel] Running Gumbel Method... 34.4% [gumbel] Running Gumbel Method... 34.5% [gumbel] Running Gumbel Method... 34.5% [gumbel] Running Gumbel Method... 34.6% [gumbel] Running Gumbel Method... 34.7% [gumbel] Running Gumbel Method... 34.8% [gumbel] Running Gumbel Method... 34.9% [gumbel] Running Gumbel Method... 35.0% [gumbel] Running Gumbel Method... 35.1% [gumbel] Running Gumbel Method... 35.2% [gumbel] Running Gumbel Method... 35.3% [gumbel] Running Gumbel Method... 35.4% [gumbel] Running Gumbel Method... 35.5% [gumbel] Running Gumbel Method... 35.5% [gumbel] Running Gumbel Method... 35.6% [gumbel] Running Gumbel Method... 35.7% [gumbel] Running Gumbel Method... 35.8% [gumbel] Running Gumbel Method... 35.9% [gumbel] Running Gumbel Method... 36.0% [gumbel] Running Gumbel Method... 36.1% [gumbel] Running Gumbel Method... 36.2% [gumbel] Running Gumbel Method... 36.3% [gumbel] Running Gumbel Method... 36.4% [gumbel] Running Gumbel Method... 36.5% [gumbel] Running Gumbel Method... 36.5% [gumbel] Running Gumbel Method... 36.6% [gumbel] Running Gumbel Method... 36.7% [gumbel] Running Gumbel Method... 36.8% [gumbel] Running Gumbel Method... 36.9% [gumbel] Running Gumbel Method... 37.0% [gumbel] Running Gumbel Method... 37.1% [gumbel] Running Gumbel Method... 37.2% [gumbel] Running Gumbel Method... 37.3% [gumbel] Running Gumbel Method... 37.4% [gumbel] Running Gumbel Method... 37.5% [gumbel] Running Gumbel Method... 37.5% [gumbel] Running Gumbel Method... 37.6% [gumbel] Running Gumbel Method... 37.7% [gumbel] Running Gumbel Method... 37.8% [gumbel] Running Gumbel Method... 37.9% [gumbel] Running Gumbel Method... 38.0% [gumbel] Running Gumbel Method... 38.1% [gumbel] Running Gumbel Method... 38.2% [gumbel] Running Gumbel Method... 38.3% [gumbel] Running Gumbel Method... 38.4% [gumbel] Running Gumbel Method... 38.5% [gumbel] Running Gumbel Method... 38.5% [gumbel] Running Gumbel Method... 38.6% [gumbel] Running Gumbel Method... 38.7% [gumbel] Running Gumbel Method... 38.8% [gumbel] Running Gumbel Method... 38.9% [gumbel] Running Gumbel Method... 39.0% [gumbel] Running Gumbel Method... 39.1% [gumbel] Running Gumbel Method... 39.2% [gumbel] Running Gumbel Method... 39.3% [gumbel] Running Gumbel Method... 39.4% [gumbel] Running Gumbel Method... 39.5% [gumbel] Running Gumbel Method... 39.5% [gumbel] Running Gumbel Method... 39.6% [gumbel] Running Gumbel Method... 39.7% [gumbel] Running Gumbel Method... 39.8% [gumbel] Running Gumbel Method... 39.9% [gumbel] Running Gumbel Method... 40.0% [gumbel] Running Gumbel Method... 40.1% [gumbel] Running Gumbel Method... 40.2% [gumbel] Running Gumbel Method... 40.3% [gumbel] Running Gumbel Method... 40.4% [gumbel] Running Gumbel Method... 40.5% [gumbel] Running Gumbel Method... 40.5% [gumbel] Running Gumbel Method... 40.6% [gumbel] Running Gumbel Method... 40.7% [gumbel] Running Gumbel Method... 40.8% [gumbel] Running Gumbel Method... 40.9% [gumbel] Running Gumbel Method... 41.0% [gumbel] Running Gumbel Method... 41.1% [gumbel] Running Gumbel Method... 41.2% [gumbel] Running Gumbel Method... 41.3% [gumbel] Running Gumbel Method... 41.4% [gumbel] Running Gumbel Method... 41.5% [gumbel] Running Gumbel Method... 41.5% [gumbel] Running Gumbel Method... 41.6% [gumbel] Running Gumbel Method... 41.7% [gumbel] Running Gumbel Method... 41.8% [gumbel] Running Gumbel Method... 41.9% [gumbel] Running Gumbel Method... 42.0% [gumbel] Running Gumbel Method... 42.1% [gumbel] Running Gumbel Method... 42.2% [gumbel] Running Gumbel Method... 42.3% [gumbel] Running Gumbel Method... 42.4% [gumbel] Running Gumbel Method... 42.5% [gumbel] Running Gumbel Method... 42.5% [gumbel] Running Gumbel Method... 42.6% [gumbel] Running Gumbel Method... 42.7% [gumbel] Running Gumbel Method... 42.8% [gumbel] Running Gumbel Method... 42.9% [gumbel] Running Gumbel Method... 43.0% [gumbel] Running Gumbel Method... 43.1% [gumbel] Running Gumbel Method... 43.2% [gumbel] Running Gumbel Method... 43.3% [gumbel] Running Gumbel Method... 43.4% [gumbel] Running Gumbel Method... 43.5% [gumbel] Running Gumbel Method... 43.5% [gumbel] Running Gumbel Method... 43.6% [gumbel] Running Gumbel Method... 43.7% [gumbel] Running Gumbel Method... 43.8% [gumbel] Running Gumbel Method... 43.9% [gumbel] Running Gumbel Method... 44.0% [gumbel] Running Gumbel Method... 44.1% [gumbel] Running Gumbel Method... 44.2% [gumbel] Running Gumbel Method... 44.3% [gumbel] Running Gumbel Method... 44.4% [gumbel] Running Gumbel Method... 44.5% [gumbel] Running Gumbel Method... 44.5% [gumbel] Running Gumbel Method... 44.6% [gumbel] Running Gumbel Method... 44.7% [gumbel] Running Gumbel Method... 44.8% [gumbel] Running Gumbel Method... 44.9% [gumbel] Running Gumbel Method... 45.0% [gumbel] Running Gumbel Method... 45.1% [gumbel] Running Gumbel Method... 45.2% [gumbel] Running Gumbel Method... 45.3% [gumbel] Running Gumbel Method... 45.4% [gumbel] Running Gumbel Method... 45.5% [gumbel] Running Gumbel Method... 45.5% [gumbel] Running Gumbel Method... 45.6% [gumbel] Running Gumbel Method... 45.7% [gumbel] Running Gumbel Method... 45.8% [gumbel] Running Gumbel Method... 45.9% [gumbel] Running Gumbel Method... 46.0% [gumbel] Running Gumbel Method... 46.1% [gumbel] Running Gumbel Method... 46.2% [gumbel] Running Gumbel Method... 46.3% [gumbel] Running Gumbel Method... 46.4% [gumbel] Running Gumbel Method... 46.5% [gumbel] Running Gumbel Method... 46.5% [gumbel] Running Gumbel Method... 46.6% [gumbel] Running Gumbel Method... 46.7% [gumbel] Running Gumbel Method... 46.8% [gumbel] Running Gumbel Method... 46.9% [gumbel] Running Gumbel Method... 47.0% [gumbel] Running Gumbel Method... 47.1% [gumbel] Running Gumbel Method... 47.2% [gumbel] Running Gumbel Method... 47.3% [gumbel] Running Gumbel Method... 47.4% [gumbel] Running Gumbel Method... 47.5% [gumbel] Running Gumbel Method... 47.5% [gumbel] Running Gumbel Method... 47.6% [gumbel] Running Gumbel Method... 47.7% [gumbel] Running Gumbel Method... 47.8% [gumbel] Running Gumbel Method... 47.9% [gumbel] Running Gumbel Method... 48.0% [gumbel] Running Gumbel Method... 48.1% [gumbel] Running Gumbel Method... 48.2% [gumbel] Running Gumbel Method... 48.3% [gumbel] Running Gumbel Method... 48.4% [gumbel] Running Gumbel Method... 48.5% [gumbel] Running Gumbel Method... 48.5% [gumbel] Running Gumbel Method... 48.6% [gumbel] Running Gumbel Method... 48.7% [gumbel] Running Gumbel Method... 48.8% [gumbel] Running Gumbel Method... 48.9% [gumbel] Running Gumbel Method... 49.0% [gumbel] Running Gumbel Method... 49.1% [gumbel] Running Gumbel Method... 49.2% [gumbel] Running Gumbel Method... 49.3% [gumbel] Running Gumbel Method... 49.4% [gumbel] Running Gumbel Method... 49.5% [gumbel] Running Gumbel Method... 49.5% [gumbel] Running Gumbel Method... 49.6% [gumbel] Running Gumbel Method... 49.7% [gumbel] Running Gumbel Method... 49.8% [gumbel] Running Gumbel Method... 49.9% [gumbel] Running Gumbel Method... 50.0% [gumbel] Running Gumbel Method... 50.1% [gumbel] Running Gumbel Method... 50.2% [gumbel] Running Gumbel Method... 50.3% [gumbel] Running Gumbel Method... 50.4% [gumbel] Running Gumbel Method... 50.5% [gumbel] Running Gumbel Method... 50.5% [gumbel] Running Gumbel Method... 50.6% [gumbel] Running Gumbel Method... 50.7% [gumbel] Running Gumbel Method... 50.8% [gumbel] Running Gumbel Method... 50.9% [gumbel] Running Gumbel Method... 51.0% [gumbel] Running Gumbel Method... 51.1% [gumbel] Running Gumbel Method... 51.2% [gumbel] Running Gumbel Method... 51.3% [gumbel] Running Gumbel Method... 51.4% [gumbel] Running Gumbel Method... 51.5% [gumbel] Running Gumbel Method... 51.5% [gumbel] Running Gumbel Method... 51.6% [gumbel] Running Gumbel Method... 51.7% [gumbel] Running Gumbel Method... 51.8% [gumbel] Running Gumbel Method... 51.9% [gumbel] Running Gumbel Method... 52.0% [gumbel] Running Gumbel Method... 52.1% [gumbel] Running Gumbel Method... 52.2% [gumbel] Running Gumbel Method... 52.3% [gumbel] Running Gumbel Method... 52.4% [gumbel] Running Gumbel Method... 52.5% [gumbel] Running Gumbel Method... 52.5% [gumbel] Running Gumbel Method... 52.6% [gumbel] Running Gumbel Method... 52.7% [gumbel] Running Gumbel Method... 52.8% [gumbel] Running Gumbel Method... 52.9% [gumbel] Running Gumbel Method... 53.0% [gumbel] Running Gumbel Method... 53.1% [gumbel] Running Gumbel Method... 53.2% [gumbel] Running Gumbel Method... 53.3% [gumbel] Running Gumbel Method... 53.4% [gumbel] Running Gumbel Method... 53.5% [gumbel] Running Gumbel Method... 53.5% [gumbel] Running Gumbel Method... 53.6% [gumbel] Running Gumbel Method... 53.7% [gumbel] Running Gumbel Method... 53.8% [gumbel] Running Gumbel Method... 53.9% [gumbel] Running Gumbel Method... 54.0% [gumbel] Running Gumbel Method... 54.1% [gumbel] Running Gumbel Method... 54.2% [gumbel] Running Gumbel Method... 54.3% [gumbel] Running Gumbel Method... 54.4% [gumbel] Running Gumbel Method... 54.5% [gumbel] Running Gumbel Method... 54.5% [gumbel] Running Gumbel Method... 54.6% [gumbel] Running Gumbel Method... 54.7% [gumbel] Running Gumbel Method... 54.8% [gumbel] Running Gumbel Method... 54.9% [gumbel] Running Gumbel Method... 55.0% [gumbel] Running Gumbel Method... 55.1% [gumbel] Running Gumbel Method... 55.2% [gumbel] Running Gumbel Method... 55.3% [gumbel] Running Gumbel Method... 55.4% [gumbel] Running Gumbel Method... 55.5% [gumbel] Running Gumbel Method... 55.5% [gumbel] Running Gumbel Method... 55.6% [gumbel] Running Gumbel Method... 55.7% [gumbel] Running Gumbel Method... 55.8% [gumbel] Running Gumbel Method... 55.9% [gumbel] Running Gumbel Method... 56.0% [gumbel] Running Gumbel Method... 56.1% [gumbel] Running Gumbel Method... 56.2% [gumbel] Running Gumbel Method... 56.3% [gumbel] Running Gumbel Method... 56.4% [gumbel] Running Gumbel Method... 56.5% [gumbel] Running Gumbel Method... 56.5% [gumbel] Running Gumbel Method... 56.6% [gumbel] Running Gumbel Method... 56.7% [gumbel] Running Gumbel Method... 56.8% [gumbel] Running Gumbel Method... 56.9% [gumbel] Running Gumbel Method... 57.0% [gumbel] Running Gumbel Method... 57.1% [gumbel] Running Gumbel Method... 57.2% [gumbel] Running Gumbel Method... 57.3% [gumbel] Running Gumbel Method... 57.4% [gumbel] Running Gumbel Method... 57.5% [gumbel] Running Gumbel Method... 57.5% [gumbel] Running Gumbel Method... 57.6% [gumbel] Running Gumbel Method... 57.7% [gumbel] Running Gumbel Method... 57.8% [gumbel] Running Gumbel Method... 57.9% [gumbel] Running Gumbel Method... 58.0% [gumbel] Running Gumbel Method... 58.1% [gumbel] Running Gumbel Method... 58.2% [gumbel] Running Gumbel Method... 58.3% [gumbel] Running Gumbel Method... 58.4% [gumbel] Running Gumbel Method... 58.5% [gumbel] Running Gumbel Method... 58.5% [gumbel] Running Gumbel Method... 58.6% [gumbel] Running Gumbel Method... 58.7% [gumbel] Running Gumbel Method... 58.8% [gumbel] Running Gumbel Method... 58.9% [gumbel] Running Gumbel Method... 59.0% [gumbel] Running Gumbel Method... 59.1% [gumbel] Running Gumbel Method... 59.2% [gumbel] Running Gumbel Method... 59.3% [gumbel] Running Gumbel Method... 59.4% [gumbel] Running Gumbel Method... 59.5% [gumbel] Running Gumbel Method... 59.5% [gumbel] Running Gumbel Method... 59.6% [gumbel] Running Gumbel Method... 59.7% [gumbel] Running Gumbel Method... 59.8% [gumbel] Running Gumbel Method... 59.9% [gumbel] Running Gumbel Method... 60.0% [gumbel] Running Gumbel Method... 60.1% [gumbel] Running Gumbel Method... 60.2% [gumbel] Running Gumbel Method... 60.3% [gumbel] Running Gumbel Method... 60.4% [gumbel] Running Gumbel Method... 60.5% [gumbel] Running Gumbel Method... 60.5% [gumbel] Running Gumbel Method... 60.6% [gumbel] Running Gumbel Method... 60.7% [gumbel] Running Gumbel Method... 60.8% [gumbel] Running Gumbel Method... 60.9% [gumbel] Running Gumbel Method... 61.0% [gumbel] Running Gumbel Method... 61.1% [gumbel] Running Gumbel Method... 61.2% [gumbel] Running Gumbel Method... 61.3% [gumbel] Running Gumbel Method... 61.4% [gumbel] Running Gumbel Method... 61.5% [gumbel] Running Gumbel Method... 61.5% [gumbel] Running Gumbel Method... 61.6% [gumbel] Running Gumbel Method... 61.7% [gumbel] Running Gumbel Method... 61.8% [gumbel] Running Gumbel Method... 61.9% [gumbel] Running Gumbel Method... 62.0% [gumbel] Running Gumbel Method... 62.1% [gumbel] Running Gumbel Method... 62.2% [gumbel] Running Gumbel Method... 62.3% [gumbel] Running Gumbel Method... 62.4% [gumbel] Running Gumbel Method... 62.5% [gumbel] Running Gumbel Method... 62.5% [gumbel] Running Gumbel Method... 62.6% [gumbel] Running Gumbel Method... 62.7% [gumbel] Running Gumbel Method... 62.8% [gumbel] Running Gumbel Method... 62.9% [gumbel] Running Gumbel Method... 63.0% [gumbel] Running Gumbel Method... 63.1% [gumbel] Running Gumbel Method... 63.2% [gumbel] Running Gumbel Method... 63.3% [gumbel] Running Gumbel Method... 63.4% [gumbel] Running Gumbel Method... 63.5% [gumbel] Running Gumbel Method... 63.5% [gumbel] Running Gumbel Method... 63.6% [gumbel] Running Gumbel Method... 63.7% [gumbel] Running Gumbel Method... 63.8% [gumbel] Running Gumbel Method... 63.9% [gumbel] Running Gumbel Method... 64.0% [gumbel] Running Gumbel Method... 64.1% [gumbel] Running Gumbel Method... 64.2% [gumbel] Running Gumbel Method... 64.3% [gumbel] Running Gumbel Method... 64.4% [gumbel] Running Gumbel Method... 64.5% [gumbel] Running Gumbel Method... 64.5% [gumbel] Running Gumbel Method... 64.6% [gumbel] Running Gumbel Method... 64.7% [gumbel] Running Gumbel Method... 64.8% [gumbel] Running Gumbel Method... 64.9% [gumbel] Running Gumbel Method... 65.0% [gumbel] Running Gumbel Method... 65.1% [gumbel] Running Gumbel Method... 65.2% [gumbel] Running Gumbel Method... 65.3% [gumbel] Running Gumbel Method... 65.4% [gumbel] Running Gumbel Method... 65.5% [gumbel] Running Gumbel Method... 65.5% [gumbel] Running Gumbel Method... 65.6% [gumbel] Running Gumbel Method... 65.7% [gumbel] Running Gumbel Method... 65.8% [gumbel] Running Gumbel Method... 65.9% [gumbel] Running Gumbel Method... 66.0% [gumbel] Running Gumbel Method... 66.1% [gumbel] Running Gumbel Method... 66.2% [gumbel] Running Gumbel Method... 66.3% [gumbel] Running Gumbel Method... 66.4% [gumbel] Running Gumbel Method... 66.5% [gumbel] Running Gumbel Method... 66.5% [gumbel] Running Gumbel Method... 66.6% [gumbel] Running Gumbel Method... 66.7% [gumbel] Running Gumbel Method... 66.8% [gumbel] Running Gumbel Method... 66.9% [gumbel] Running Gumbel Method... 67.0% [gumbel] Running Gumbel Method... 67.1% [gumbel] Running Gumbel Method... 67.2% [gumbel] Running Gumbel Method... 67.3% [gumbel] Running Gumbel Method... 67.4% [gumbel] Running Gumbel Method... 67.5% [gumbel] Running Gumbel Method... 67.5% [gumbel] Running Gumbel Method... 67.6% [gumbel] Running Gumbel Method... 67.7% [gumbel] Running Gumbel Method... 67.8% [gumbel] Running Gumbel Method... 67.9% [gumbel] Running Gumbel Method... 68.0% [gumbel] Running Gumbel Method... 68.1% [gumbel] Running Gumbel Method... 68.2% [gumbel] Running Gumbel Method... 68.3% [gumbel] Running Gumbel Method... 68.4% [gumbel] Running Gumbel Method... 68.5% [gumbel] Running Gumbel Method... 68.5% [gumbel] Running Gumbel Method... 68.6% [gumbel] Running Gumbel Method... 68.7% [gumbel] Running Gumbel Method... 68.8% [gumbel] Running Gumbel Method... 68.9% [gumbel] Running Gumbel Method... 69.0% [gumbel] Running Gumbel Method... 69.1% [gumbel] Running Gumbel Method... 69.2% [gumbel] Running Gumbel Method... 69.3% [gumbel] Running Gumbel Method... 69.4% [gumbel] Running Gumbel Method... 69.5% [gumbel] Running Gumbel Method... 69.5% [gumbel] Running Gumbel Method... 69.6% [gumbel] Running Gumbel Method... 69.7% [gumbel] Running Gumbel Method... 69.8% [gumbel] Running Gumbel Method... 69.9% [gumbel] Running Gumbel Method... 70.0% [gumbel] Running Gumbel Method... 70.1% [gumbel] Running Gumbel Method... 70.2% [gumbel] Running Gumbel Method... 70.3% [gumbel] Running Gumbel Method... 70.4% [gumbel] Running Gumbel Method... 70.5% [gumbel] Running Gumbel Method... 70.5% [gumbel] Running Gumbel Method... 70.6% [gumbel] Running Gumbel Method... 70.7% [gumbel] Running Gumbel Method... 70.8% [gumbel] Running Gumbel Method... 70.9% [gumbel] Running Gumbel Method... 71.0% [gumbel] Running Gumbel Method... 71.1% [gumbel] Running Gumbel Method... 71.2% [gumbel] Running Gumbel Method... 71.3% [gumbel] Running Gumbel Method... 71.4% [gumbel] Running Gumbel Method... 71.5% [gumbel] Running Gumbel Method... 71.5% [gumbel] Running Gumbel Method... 71.6% [gumbel] Running Gumbel Method... 71.7% [gumbel] Running Gumbel Method... 71.8% [gumbel] Running Gumbel Method... 71.9% [gumbel] Running Gumbel Method... 72.0% [gumbel] Running Gumbel Method... 72.1% [gumbel] Running Gumbel Method... 72.2% [gumbel] Running Gumbel Method... 72.3% [gumbel] Running Gumbel Method... 72.4% [gumbel] Running Gumbel Method... 72.5% [gumbel] Running Gumbel Method... 72.5% [gumbel] Running Gumbel Method... 72.6% [gumbel] Running Gumbel Method... 72.7% [gumbel] Running Gumbel Method... 72.8% [gumbel] Running Gumbel Method... 72.9% [gumbel] Running Gumbel Method... 73.0% [gumbel] Running Gumbel Method... 73.1% [gumbel] Running Gumbel Method... 73.2% [gumbel] Running Gumbel Method... 73.3% [gumbel] Running Gumbel Method... 73.4% [gumbel] Running Gumbel Method... 73.5% [gumbel] Running Gumbel Method... 73.5% [gumbel] Running Gumbel Method... 73.6% [gumbel] Running Gumbel Method... 73.7% [gumbel] Running Gumbel Method... 73.8% [gumbel] Running Gumbel Method... 73.9% [gumbel] Running Gumbel Method... 74.0% [gumbel] Running Gumbel Method... 74.1% [gumbel] Running Gumbel Method... 74.2% [gumbel] Running Gumbel Method... 74.3% [gumbel] Running Gumbel Method... 74.4% [gumbel] Running Gumbel Method... 74.5% [gumbel] Running Gumbel Method... 74.5% [gumbel] Running Gumbel Method... 74.6% [gumbel] Running Gumbel Method... 74.7% [gumbel] Running Gumbel Method... 74.8% [gumbel] Running Gumbel Method... 74.9% [gumbel] Running Gumbel Method... 75.0% [gumbel] Running Gumbel Method... 75.1% [gumbel] Running Gumbel Method... 75.2% [gumbel] Running Gumbel Method... 75.3% [gumbel] Running Gumbel Method... 75.4% [gumbel] Running Gumbel Method... 75.5% [gumbel] Running Gumbel Method... 75.5% [gumbel] Running Gumbel Method... 75.6% [gumbel] Running Gumbel Method... 75.7% [gumbel] Running Gumbel Method... 75.8% [gumbel] Running Gumbel Method... 75.9% [gumbel] Running Gumbel Method... 76.0% [gumbel] Running Gumbel Method... 76.1% [gumbel] Running Gumbel Method... 76.2% [gumbel] Running Gumbel Method... 76.3% [gumbel] Running Gumbel Method... 76.4% [gumbel] Running Gumbel Method... 76.5% [gumbel] Running Gumbel Method... 76.5% [gumbel] Running Gumbel Method... 76.6% [gumbel] Running Gumbel Method... 76.7% [gumbel] Running Gumbel Method... 76.8% [gumbel] Running Gumbel Method... 76.9% [gumbel] Running Gumbel Method... 77.0% [gumbel] Running Gumbel Method... 77.1% [gumbel] Running Gumbel Method... 77.2% [gumbel] Running Gumbel Method... 77.3% [gumbel] Running Gumbel Method... 77.4% [gumbel] Running Gumbel Method... 77.5% [gumbel] Running Gumbel Method... 77.5% [gumbel] Running Gumbel Method... 77.6% [gumbel] Running Gumbel Method... 77.7% [gumbel] Running Gumbel Method... 77.8% [gumbel] Running Gumbel Method... 77.9% [gumbel] Running Gumbel Method... 78.0% [gumbel] Running Gumbel Method... 78.1% [gumbel] Running Gumbel Method... 78.2% [gumbel] Running Gumbel Method... 78.3% [gumbel] Running Gumbel Method... 78.4% [gumbel] Running Gumbel Method... 78.5% [gumbel] Running Gumbel Method... 78.5% [gumbel] Running Gumbel Method... 78.6% [gumbel] Running Gumbel Method... 78.7% [gumbel] Running Gumbel Method... 78.8% [gumbel] Running Gumbel Method... 78.9% [gumbel] Running Gumbel Method... 79.0% [gumbel] Running Gumbel Method... 79.1% [gumbel] Running Gumbel Method... 79.2% [gumbel] Running Gumbel Method... 79.3% [gumbel] Running Gumbel Method... 79.4% [gumbel] Running Gumbel Method... 79.5% [gumbel] Running Gumbel Method... 79.5% [gumbel] Running Gumbel Method... 79.6% [gumbel] Running Gumbel Method... 79.7% [gumbel] Running Gumbel Method... 79.8% [gumbel] Running Gumbel Method... 79.9% [gumbel] Running Gumbel Method... 80.0% [gumbel] Running Gumbel Method... 80.1% [gumbel] Running Gumbel Method... 80.2% [gumbel] Running Gumbel Method... 80.3% [gumbel] Running Gumbel Method... 80.4% [gumbel] Running Gumbel Method... 80.5% [gumbel] Running Gumbel Method... 80.5% [gumbel] Running Gumbel Method... 80.6% [gumbel] Running Gumbel Method... 80.7% [gumbel] Running Gumbel Method... 80.8% [gumbel] Running Gumbel Method... 80.9% [gumbel] Running Gumbel Method... 81.0% [gumbel] Running Gumbel Method... 81.1% [gumbel] Running Gumbel Method... 81.2% [gumbel] Running Gumbel Method... 81.3% [gumbel] Running Gumbel Method... 81.4% [gumbel] Running Gumbel Method... 81.5% [gumbel] Running Gumbel Method... 81.5% [gumbel] Running Gumbel Method... 81.6% [gumbel] Running Gumbel Method... 81.7% [gumbel] Running Gumbel Method... 81.8% [gumbel] Running Gumbel Method... 81.9% [gumbel] Running Gumbel Method... 82.0% [gumbel] Running Gumbel Method... 82.1% [gumbel] Running Gumbel Method... 82.2% [gumbel] Running Gumbel Method... 82.3% [gumbel] Running Gumbel Method... 82.4% [gumbel] Running Gumbel Method... 82.5% [gumbel] Running Gumbel Method... 82.5% [gumbel] Running Gumbel Method... 82.6% [gumbel] Running Gumbel Method... 82.7% [gumbel] Running Gumbel Method... 82.8% [gumbel] Running Gumbel Method... 82.9% [gumbel] Running Gumbel Method... 83.0% [gumbel] Running Gumbel Method... 83.1% [gumbel] Running Gumbel Method... 83.2% [gumbel] Running Gumbel Method... 83.3% [gumbel] Running Gumbel Method... 83.4% [gumbel] Running Gumbel Method... 83.5% [gumbel] Running Gumbel Method... 83.5% [gumbel] Running Gumbel Method... 83.6% [gumbel] Running Gumbel Method... 83.7% [gumbel] Running Gumbel Method... 83.8% [gumbel] Running Gumbel Method... 83.9% [gumbel] Running Gumbel Method... 84.0% [gumbel] Running Gumbel Method... 84.1% [gumbel] Running Gumbel Method... 84.2% [gumbel] Running Gumbel Method... 84.3% [gumbel] Running Gumbel Method... 84.4% [gumbel] Running Gumbel Method... 84.5% [gumbel] Running Gumbel Method... 84.5% [gumbel] Running Gumbel Method... 84.6% [gumbel] Running Gumbel Method... 84.7% [gumbel] Running Gumbel Method... 84.8% [gumbel] Running Gumbel Method... 84.9% [gumbel] Running Gumbel Method... 85.0% [gumbel] Running Gumbel Method... 85.1% [gumbel] Running Gumbel Method... 85.2% [gumbel] Running Gumbel Method... 85.3% [gumbel] Running Gumbel Method... 85.4% [gumbel] Running Gumbel Method... 85.5% [gumbel] Running Gumbel Method... 85.5% [gumbel] Running Gumbel Method... 85.6% [gumbel] Running Gumbel Method... 85.7% [gumbel] Running Gumbel Method... 85.8% [gumbel] Running Gumbel Method... 85.9% [gumbel] Running Gumbel Method... 86.0% [gumbel] Running Gumbel Method... 86.1% [gumbel] Running Gumbel Method... 86.2% [gumbel] Running Gumbel Method... 86.3% [gumbel] Running Gumbel Method... 86.4% [gumbel] Running Gumbel Method... 86.5% [gumbel] Running Gumbel Method... 86.5% [gumbel] Running Gumbel Method... 86.6% [gumbel] Running Gumbel Method... 86.7% [gumbel] Running Gumbel Method... 86.8% [gumbel] Running Gumbel Method... 86.9% [gumbel] Running Gumbel Method... 87.0% [gumbel] Running Gumbel Method... 87.1% [gumbel] Running Gumbel Method... 87.2% [gumbel] Running Gumbel Method... 87.3% [gumbel] Running Gumbel Method... 87.4% [gumbel] Running Gumbel Method... 87.5% [gumbel] Running Gumbel Method... 87.5% [gumbel] Running Gumbel Method... 87.6% [gumbel] Running Gumbel Method... 87.7% [gumbel] Running Gumbel Method... 87.8% [gumbel] Running Gumbel Method... 87.9% [gumbel] Running Gumbel Method... 88.0% [gumbel] Running Gumbel Method... 88.1% [gumbel] Running Gumbel Method... 88.2% [gumbel] Running Gumbel Method... 88.3% [gumbel] Running Gumbel Method... 88.4% [gumbel] Running Gumbel Method... 88.5% [gumbel] Running Gumbel Method... 88.5% [gumbel] Running Gumbel Method... 88.6% [gumbel] Running Gumbel Method... 88.7% [gumbel] Running Gumbel Method... 88.8% [gumbel] Running Gumbel Method... 88.9% [gumbel] Running Gumbel Method... 89.0% [gumbel] Running Gumbel Method... 89.1% [gumbel] Running Gumbel Method... 89.2% [gumbel] Running Gumbel Method... 89.3% [gumbel] Running Gumbel Method... 89.4% [gumbel] Running Gumbel Method... 89.5% [gumbel] Running Gumbel Method... 89.5% [gumbel] Running Gumbel Method... 89.6% [gumbel] Running Gumbel Method... 89.7% [gumbel] Running Gumbel Method... 89.8% [gumbel] Running Gumbel Method... 89.9% [gumbel] Running Gumbel Method... 90.0% [gumbel] Running Gumbel Method... 90.1% [gumbel] Running Gumbel Method... 90.2% [gumbel] Running Gumbel Method... 90.3% [gumbel] Running Gumbel Method... 90.4% [gumbel] Running Gumbel Method... 90.5% [gumbel] Running Gumbel Method... 90.5% [gumbel] Running Gumbel Method... 90.6% [gumbel] Running Gumbel Method... 90.7% [gumbel] Running Gumbel Method... 90.8% [gumbel] Running Gumbel Method... 90.9% [gumbel] Running Gumbel Method... 91.0% [gumbel] Running Gumbel Method... 91.1% [gumbel] Running Gumbel Method... 91.2% [gumbel] Running Gumbel Method... 91.3% [gumbel] Running Gumbel Method... 91.4% [gumbel] Running Gumbel Method... 91.5% [gumbel] Running Gumbel Method... 91.5% [gumbel] Running Gumbel Method... 91.6% [gumbel] Running Gumbel Method... 91.7% [gumbel] Running Gumbel Method... 91.8% [gumbel] Running Gumbel Method... 91.9% [gumbel] Running Gumbel Method... 92.0% [gumbel] Running Gumbel Method... 92.1% [gumbel] Running Gumbel Method... 92.2% [gumbel] Running Gumbel Method... 92.3% [gumbel] Running Gumbel Method... 92.4% [gumbel] Running Gumbel Method... 92.5% [gumbel] Running Gumbel Method... 92.5% [gumbel] Running Gumbel Method... 92.6% [gumbel] Running Gumbel Method... 92.7% [gumbel] Running Gumbel Method... 92.8% [gumbel] Running Gumbel Method... 92.9% [gumbel] Running Gumbel Method... 93.0% [gumbel] Running Gumbel Method... 93.1% [gumbel] Running Gumbel Method... 93.2% [gumbel] Running Gumbel Method... 93.3% [gumbel] Running Gumbel Method... 93.4% [gumbel] Running Gumbel Method... 93.5% [gumbel] Running Gumbel Method... 93.5% [gumbel] Running Gumbel Method... 93.6% [gumbel] Running Gumbel Method... 93.7% [gumbel] Running Gumbel Method... 93.8% [gumbel] Running Gumbel Method... 93.9% [gumbel] Running Gumbel Method... 94.0% [gumbel] Running Gumbel Method... 94.1% [gumbel] Running Gumbel Method... 94.2% [gumbel] Running Gumbel Method... 94.3% [gumbel] Running Gumbel Method... 94.4% [gumbel] Running Gumbel Method... 94.5% [gumbel] Running Gumbel Method... 94.5% [gumbel] Running Gumbel Method... 94.6% [gumbel] Running Gumbel Method... 94.7% [gumbel] Running Gumbel Method... 94.8% [gumbel] Running Gumbel Method... 94.9% [gumbel] Running Gumbel Method... 95.0% [gumbel] Running Gumbel Method... 95.1% [gumbel] Running Gumbel Method... 95.2% [gumbel] Running Gumbel Method... 95.3% [gumbel] Running Gumbel Method... 95.4% [gumbel] Running Gumbel Method... 95.5% [gumbel] Running Gumbel Method... 95.5% [gumbel] Running Gumbel Method... 95.6% [gumbel] Running Gumbel Method... 95.7% [gumbel] Running Gumbel Method... 95.8% [gumbel] Running Gumbel Method... 95.9% [gumbel] Running Gumbel Method... 96.0% [gumbel] Running Gumbel Method... 96.1% [gumbel] Running Gumbel Method... 96.2% [gumbel] Running Gumbel Method... 96.3% [gumbel] Running Gumbel Method... 96.4% [gumbel] Running Gumbel Method... 96.5% [gumbel] Running Gumbel Method... 96.5% [gumbel] Running Gumbel Method... 96.6% [gumbel] Running Gumbel Method... 96.7% [gumbel] Running Gumbel Method... 96.8% [gumbel] Running Gumbel Method... 96.9% [gumbel] Running Gumbel Method... 97.0% [gumbel] Running Gumbel Method... 97.1% [gumbel] Running Gumbel Method... 97.2% [gumbel] Running Gumbel Method... 97.3% [gumbel] Running Gumbel Method... 97.4% [gumbel] Running Gumbel Method... 97.5% [gumbel] Running Gumbel Method... 97.5% [gumbel] Running Gumbel Method... 97.6% [gumbel] Running Gumbel Method... 97.7% [gumbel] Running Gumbel Method... 97.8% [gumbel] Running Gumbel Method... 97.9% [gumbel] Running Gumbel Method... 98.0% [gumbel] Running Gumbel Method... 98.1% [gumbel] Running Gumbel Method... 98.2% [gumbel] Running Gumbel Method... 98.3% [gumbel] Running Gumbel Method... 98.4% [gumbel] Running Gumbel Method... 98.5% [gumbel] Running Gumbel Method... 98.5% [gumbel] Running Gumbel Method... 98.6% [gumbel] Running Gumbel Method... 98.7% [gumbel] Running Gumbel Method... 98.8% [gumbel] Running Gumbel Method... 98.9% [gumbel] Running Gumbel Method... 99.0% [gumbel] Running Gumbel Method... 99.1% [gumbel] Running Gumbel Method... 99.2% [gumbel] Running Gumbel Method... 99.3% [gumbel] Running Gumbel Method... 99.4% [gumbel] Running Gumbel Method... 99.5% [gumbel] Running Gumbel Method... 99.5% [gumbel] Running Gumbel Method... 99.6% [gumbel] Running Gumbel Method... 99.7% [gumbel] Running Gumbel Method... 99.8% [gumbel] Running Gumbel Method... 99.9% [gumbel] Running Gumbel Method... 100.0% ok test_HMM (tests.test_analysis_methods.TestMethods) ... /build/tnseq-transit-3.2.1/tests/../src/pytransit/analysis/hmm.py:194: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/data/test.wig' mode='r' encoding='UTF-8'> T = len([1 for line in open(ctrldata[0]).readlines() if not line.startswith("#")]) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:910: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/data/test.wig' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:927: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/data/test.wig' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback [gumbel] [gumbel] Adding File: /build/tnseq-transit-3.2.1/tests/testoutput.txt [gumbel] Finished Gumbel Method Removing output file... #################### tests.test_analysis_methods.TestMethods.test_HMM #################### [hmm] Starting HMM Method [hmm] Getting Data [hmm] Normalizing using: TTR [hmm] Running HMM Method... 2.5% [hmm] Running HMM Method... 5.0% [hmm] Running HMM Method... 7.5% [hmm] Running HMM Method... 10.0% [hmm] Running HMM Method... 12.5% [hmm] Running HMM Method... 15.0% [hmm] Running HMM Method... 17.5% [hmm] Running HMM Method... 20.0% [hmm] Running HMM Method... 22.5% [hmm] Running HMM Method... 25.0% [hmm] Running HMM Method... 27.5% [hmm] Running HMM Method... 30.0% [hmm] Running HMM Method... 32.5% [hmm] Running HMM Method... 35.0% [hmm] Running HMM Method... 37.5% [hmm] Running HMM Method... 40.0% [hmm] Running HMM Method... 42.5% [hmm] Running HMM Method... 45.0% [hmm] Running HMM Method... 47.5% [hmm] Running HMM Method... 50.0% [hmm] Running HMM Method... 50.0% [hmm] Running HMM Method... 52.5% [hmm] Running HMM Method... 55.0% [hmm] Running HMM Method... 57.5% [hmm] Running HMM Method... 60.0% [hmm] Running HMM Method... 62.5% [hmm] Running HMM Method... 65.0% [hmm] Running HMM Method... 67.5% [hmm] Running HMM Method... 70.0% [hmm] Running HMM Method... 72.5% [hmm] Running HMM Method... 75.0% [hmm] Running HMM Method... 77.5% [hmm] Running HMM Method... 80.0% [hmm] Running HMM Method... 82.5% [hmm] Running HMM Method... 85.0% [hmm] Running HMM Method... 87.5% [hmm] Running HMM Method... 90.0% [hmm] Running HMM Method... 92.5% [hmm] Running HMM Method... 95.0% [hmm] Running HMM Method... 97.5% ok test_anova (tests.test_analysis_methods.TestMethods) ... /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:121: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/data/test.prot_table' mode='r' encoding='UTF-8'> for line in open(fname): ResourceWarning: Enable tracemalloc to get the object allocation traceback [hmm] [hmm] Finished HMM - Sites Method [hmm] Adding File: /build/tnseq-transit-3.2.1/tests/testoutput.txt [hmm] Creating HMM Genes Level Output [hmm] Adding File: /build/tnseq-transit-3.2.1/tests/testoutput_genes.txt [hmm] Finished HMM Method Removing output file... #################### tests.test_analysis_methods.TestMethods.test_anova #################### [anova] Starting Anova analysis [anova] Getting Data [anova] Normalizing using: TTR [anova] Running Anova [anova] Running Anova Method... 2.0% [anova] Running Anova Method... 3.9% [anova] Running Anova Method... 5.9% [anova] Running Anova Method... 7.8% [anova] Running Anova Method... 9.8% [anova] Running Anova Method... 11.8% [anova] Running Anova Method... 13.7% [anova] Running Anova Method... 15.7% [anova] Running Anova Method... 17.6% [anova] Running Anova Method... 19.6% [anova] Running Anova Method... 21.6% [anova] Running Anova Method... 23.5% [anova] Running Anova Method... 25.5% [anova] Running Anova Method... 27.5% [anova] Running Anova Method... 29.4% [anova] Running Anova Method... 31.4% [anova] Running Anova Method... 33.3% [anova] Running Anova Method... 35.3% [anova] Running Anova Method... 37.3% [anova] Running Anova Method... 39.2% [anova] Running Anova Method... 41.2% [anova] Running Anova Method... 43.1% [anova] Running Anova Method... 45.1% [anova] Running Anova Method... 47.1% [anova] Running Anova Method... 49.0% [anova] Running Anova Method... 51.0% [anova] Running Anova Method... 52.9% [anova] Running Anova Method... 54.9% [anova] Running Anova Method... 56.9% [anova] Running Anova Method... 58.8% [anova] Running Anova Method... 60.8% [anova] Running Anova Method... 62.7% [anova] Running Anova Method... 64.7% [anova] Running Anova Method... 66.7% [anova] Running Anova Method... 68.6% [anova] Running Anova Method... 70.6% [anova] Running Anova Method... 72.5% [anova] Running Anova Method... 74.5% [anova] Running Anova Method... 76.5% [anova] Running Anova Method... 78.4% [anova] Running Anova Method... 80.4% [anova] Running Anova Method... 82.4% [anova] Running Anova Method... 84.3% [anova] Running Anova Method... 86.3% [anova] Running Anova Method... 88.2% [anova] Running Anova Method... 90.2% [anova] Running Anova Method... 92.2% [anova] Running Anova Method... 94.1% [anova] Running Anova Method... 96.1% [anova] Running Anova Method... 98.0% [anova] Running Anova Method... 100.0% /build/tnseq-transit-3.2.1/tests/transit_test.py:89: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/testoutput.txt' mode='r' encoding='UTF-8'> for line in open(fname): ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_resampling (tests.test_analysis_methods.TestMethods) ... /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:910: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/../src/pytransit/data/glycerol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:910: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/../src/pytransit/data/glycerol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:927: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/../src/pytransit/data/glycerol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:927: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/../src/pytransit/data/glycerol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:910: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/../src/pytransit/data/cholesterol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:910: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/../src/pytransit/data/cholesterol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:910: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/../src/pytransit/data/cholesterol_H37Rv_rep3.wig' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:927: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/../src/pytransit/data/cholesterol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:927: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/../src/pytransit/data/cholesterol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:927: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/../src/pytransit/data/cholesterol_H37Rv_rep3.wig' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:1287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/data/test.prot_table' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:1214: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/data/test.prot_table' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:518: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/data/test.prot_table' mode='r' encoding='UTF-8'> for line in open(self.annotation): ResourceWarning: Enable tracemalloc to get the object allocation traceback [anova] Adding File: /build/tnseq-transit-3.2.1/tests/testoutput.txt [anova] Finished Anova analysis [anova] Time: 1.5s Removing output file... #################### tests.test_analysis_methods.TestMethods.test_resampling #################### [resampling] Starting resampling Method [resampling] Getting Data [resampling] Preprocessing Ctrl data... [resampling] Normalizing using: TTR [resampling] Performing LOESS Correction [resampling] Preprocessing Exp data... [resampling] Normalizing using: TTR [resampling] Performing LOESS Correction [resampling] Running Resampling Method... 2.0% [resampling] Running Resampling Method... 3.9% [resampling] Running Resampling Method... 5.9% [resampling] Running Resampling Method... 7.8% [resampling] Running Resampling Method... 9.8% [resampling] Running Resampling Method... 11.8% [resampling] Running Resampling Method... 13.7% [resampling] Running Resampling Method... 15.7% [resampling] Running Resampling Method... 17.6% [resampling] Running Resampling Method... 19.6% [resampling] Running Resampling Method... 21.6% [resampling] Running Resampling Method... 23.5% [resampling] Running Resampling Method... 25.5% [resampling] Running Resampling Method... 27.5% [resampling] Running Resampling Method... 29.4% [resampling] Running Resampling Method... 31.4% [resampling] Running Resampling Method... 33.3% [resampling] Running Resampling Method... 35.3% [resampling] Running Resampling Method... 37.3% [resampling] Running Resampling Method... 39.2% [resampling] Running Resampling Method... 41.2% [resampling] Running Resampling Method... 43.1% [resampling] Running Resampling Method... 45.1% [resampling] Running Resampling Method... 47.1% [resampling] Running Resampling Method... 49.0% [resampling] Running Resampling Method... 51.0% [resampling] Running Resampling Method... 52.9% [resampling] Running Resampling Method... 54.9% [resampling] Running Resampling Method... 56.9% [resampling] Running Resampling Method... 58.8% [resampling] Running Resampling Method... 60.8% [resampling] Running Resampling Method... 62.7% [resampling] Running Resampling Method... 64.7% [resampling] Running Resampling Method... 66.7% [resampling] Running Resampling Method... 68.6% [resampling] Running Resampling Method... 70.6% [resampling] Running Resampling Method... 72.5% [resampling] Running Resampling Method... 74.5% [resampling] Running Resampling Method... 76.5% [resampling] Running Resampling Method... 78.4% [resampling] Running Resampling Method... 80.4% [resampling] Running Resampling Method... 82.4% [resampling] Running Resampling Method... 84.3% [resampling] Running Resampling Method... 86.3% [resampling] Running Resampling Method... 88.2% [resampling] Running Resampling Method... 90.2% [resampling] Running Resampling Method... 92.2% [resampling] Running Resampling Method... 94.1% [resampling] Running Resampling Method... 96.1% [resampling] Running Resampling Method... 98.0% [resampling] Running Resampling Method... 100.0% /build/tnseq-transit-3.2.1/tests/transit_test.py:89: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/testoutput.txt' mode='r' encoding='UTF-8'> for line in open(fname): ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_resampling_adaptive (tests.test_analysis_methods.TestMethods) ... /build/tnseq-transit-3.2.1/tests/../src/pytransit/stat_tools.py:717: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray DATA[K] = numpy.array([L1[K], L2[K]]) /build/tnseq-transit-3.2.1/tests/../src/pytransit/stat_tools.py:515: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray E[L] = numpy.array([perm[:n1], perm[n1:]]) [resampling] [resampling] Performing Benjamini-Hochberg Correction [resampling] Adding File: /build/tnseq-transit-3.2.1/tests/testoutput.txt [resampling] Finished resampling Method Removing output file... #################### tests.test_analysis_methods.TestMethods.test_resampling_adaptive #################### [resampling] Starting resampling Method [resampling] Getting Data [resampling] Preprocessing Ctrl data... [resampling] Normalizing using: TTR [resampling] Preprocessing Exp data... [resampling] Normalizing using: TTR [resampling] Running Resampling Method... 2.0% [resampling] Running Resampling Method... 3.9% [resampling] Running Resampling Method... 5.9% [resampling] Running Resampling Method... 7.8% [resampling] Running Resampling Method... 9.8% [resampling] Running Resampling Method... 11.8% [resampling] Running Resampling Method... 13.7% [resampling] Running Resampling Method... 15.7% [resampling] Running Resampling Method... 17.6% [resampling] Running Resampling Method... 19.6% [resampling] Running Resampling Method... 21.6% [resampling] Running Resampling Method... 23.5% [resampling] Running Resampling Method... 25.5% [resampling] Running Resampling Method... 27.5% [resampling] Running Resampling Method... 29.4% [resampling] Running Resampling Method... 31.4% [resampling] Running Resampling Method... 33.3% [resampling] Running Resampling Method... 35.3% [resampling] Running Resampling Method... 37.3% [resampling] Running Resampling Method... 39.2% [resampling] Running Resampling Method... 41.2% [resampling] Running Resampling Method... 43.1% [resampling] Running Resampling Method... 45.1% [resampling] Running Resampling Method... 47.1% [resampling] Running Resampling Method... 49.0% [resampling] Running Resampling Method... 51.0% [resampling] Running Resampling Method... 52.9% [resampling] Running Resampling Method... 54.9% [resampling] Running Resampling Method... 56.9% [resampling] Running Resampling Method... 58.8% [resampling] Running Resampling Method... 60.8% [resampling] Running Resampling Method... 62.7% [resampling] Running Resampling Method... 64.7% [resampling] Running Resampling Method... 66.7% [resampling] Running Resampling Method... 68.6% [resampling] Running Resampling Method... 70.6% [resampling] Running Resampling Method... 72.5% [resampling] Running Resampling Method... 74.5% [resampling] Running Resampling Method... 76.5% [resampling] Running Resampling Method... 78.4% [resampling] Running Resampling Method... 80.4% [resampling] Running Resampling Method... 82.4% [resampling] Running Resampling Method... 84.3% [resampling] Running Resampling Method... 86.3% [resampling] Running Resampling Method... 88.2% [resampling] Running Resampling Method... 90.2% [resampling] Running Resampling Method... 92.2% [resampling] Running Resampling Method... 94.1% [resampling] Running Resampling Method... 96.1% [resampling] Running Resampling Method... 98.0% [resampling] Running Resampling Method... 100.0% ok test_resampling_combined_wig (tests.test_analysis_methods.TestMethods) ... [resampling] [resampling] Performing Benjamini-Hochberg Correction [resampling] Adding File: /build/tnseq-transit-3.2.1/tests/testoutput.txt [resampling] Finished resampling Method Removing output file... #################### tests.test_analysis_methods.TestMethods.test_resampling_combined_wig #################### [resampling] Starting resampling Method [resampling] Getting Data [resampling] Preprocessing Ctrl data... [resampling] Normalizing using: TTR [resampling] Preprocessing Exp data... [resampling] Normalizing using: TTR [resampling] Running Resampling Method... 2.0% [resampling] Running Resampling Method... 3.9% [resampling] Running Resampling Method... 5.9% [resampling] Running Resampling Method... 7.8% [resampling] Running Resampling Method... 9.8% [resampling] Running Resampling Method... 11.8% [resampling] Running Resampling Method... 13.7% [resampling] Running Resampling Method... 15.7% [resampling] Running Resampling Method... 17.6% [resampling] Running Resampling Method... 19.6% [resampling] Running Resampling Method... 21.6% [resampling] Running Resampling Method... 23.5% [resampling] Running Resampling Method... 25.5% [resampling] Running Resampling Method... 27.5% [resampling] Running Resampling Method... 29.4% [resampling] Running Resampling Method... 31.4% [resampling] Running Resampling Method... 33.3% [resampling] Running Resampling Method... 35.3% [resampling] Running Resampling Method... 37.3% [resampling] Running Resampling Method... 39.2% [resampling] Running Resampling Method... 41.2% [resampling] Running Resampling Method... 43.1% [resampling] Running Resampling Method... 45.1% [resampling] Running Resampling Method... 47.1% [resampling] Running Resampling Method... 49.0% [resampling] Running Resampling Method... 51.0% [resampling] Running Resampling Method... 52.9% [resampling] Running Resampling Method... 54.9% [resampling] Running Resampling Method... 56.9% [resampling] Running Resampling Method... 58.8% [resampling] Running Resampling Method... 60.8% [resampling] Running Resampling Method... 62.7% [resampling] Running Resampling Method... 64.7% [resampling] Running Resampling Method... 66.7% [resampling] Running Resampling Method... 68.6% [resampling] Running Resampling Method... 70.6% [resampling] Running Resampling Method... 72.5% [resampling] Running Resampling Method... 74.5% [resampling] Running Resampling Method... 76.5% [resampling] Running Resampling Method... 78.4% [resampling] Running Resampling Method... 80.4% [resampling] Running Resampling Method... 82.4% [resampling] Running Resampling Method... 84.3% [resampling] Running Resampling Method... 86.3% [resampling] Running Resampling Method... 88.2% [resampling] Running Resampling Method... 90.2% [resampling] Running Resampling Method... 92.2% [resampling] Running Resampling Method... 94.1% [resampling] Running Resampling Method... 96.1% [resampling] Running Resampling Method... 98.0% [resampling] Running Resampling Method... 100.0% ok test_resampling_histogram (tests.test_analysis_methods.TestMethods) ... [resampling] [resampling] Performing Benjamini-Hochberg Correction [resampling] Adding File: /build/tnseq-transit-3.2.1/tests/testoutput.txt [resampling] Finished resampling Method 37 34 Removing output file... #################### tests.test_analysis_methods.TestMethods.test_resampling_histogram #################### [resampling] Starting resampling Method [resampling] Getting Data [resampling] Preprocessing Ctrl data... [resampling] Normalizing using: TTR [resampling] Preprocessing Exp data... [resampling] Normalizing using: TTR [resampling] Running Resampling Method... 2.0% [resampling] Running Resampling Method... 3.9% [resampling] Running Resampling Method... 5.9% [resampling] Running Resampling Method... 7.8% [resampling] Running Resampling Method... 9.8% [resampling] Running Resampling Method... 11.8% [resampling] Running Resampling Method... 13.7% [resampling] Running Resampling Method... 15.7% [resampling] Running Resampling Method... 17.6% [resampling] Running Resampling Method... 19.6% [resampling] Running Resampling Method... 21.6% [resampling] Running Resampling Method... 23.5% [resampling] Running Resampling Method... 25.5% [resampling] Running Resampling Method... 27.5% [resampling] Running Resampling Method... 29.4% [resampling] Running Resampling Method... 31.4% [resampling] Running Resampling Method... 33.3% [resampling] Running Resampling Method... 35.3% [resampling] Running Resampling Method... 37.3% [resampling] Running Resampling Method... 39.2% [resampling] Running Resampling Method... 41.2% [resampling] Running Resampling Method... 43.1% [resampling] Running Resampling Method... 45.1% [resampling] Running Resampling Method... 47.1% [resampling] Running Resampling Method... 49.0% [resampling] Running Resampling Method... 51.0% [resampling] Running Resampling Method... 52.9% [resampling] Running Resampling Method... 54.9% [resampling] Running Resampling Method... 56.9% [resampling] Running Resampling Method... 58.8% [resampling] Running Resampling Method... 60.8% [resampling] Running Resampling Method... 62.7% [resampling] Running Resampling Method... 64.7% [resampling] Running Resampling Method... 66.7% [resampling] Running Resampling Method... 68.6% [resampling] Running Resampling Method... 70.6% [resampling] Running Resampling Method... 72.5% [resampling] Running Resampling Method... 74.5% [resampling] Running Resampling Method... 76.5% [resampling] Running Resampling Method... 78.4% [resampling] Running Resampling Method... 80.4% [resampling] Running Resampling Method... 82.4% [resampling] Running Resampling Method... 84.3% [resampling] Running Resampling Method... 86.3% [resampling] Running Resampling Method... 88.2% [resampling] Running Resampling Method... 90.2% [resampling] Running Resampling Method... 92.2% [resampling] Running Resampling Method... 94.1% [resampling] Running Resampling Method... 96.1% [resampling] Running Resampling Method... 98.0% [resampling] Running Resampling Method... 100.0% ok test_resampling_multistrain (tests.test_analysis_methods.TestMethods) ... [resampling] [resampling] Performing Benjamini-Hochberg Correction [resampling] Adding File: /build/tnseq-transit-3.2.1/tests/testoutput.txt [resampling] Finished resampling Method Removing histogram files Removing output file... #################### tests.test_analysis_methods.TestMethods.test_resampling_multistrain #################### [resampling] Starting resampling Method [resampling] Getting Data [resampling] Multiple annotation files found [resampling] Mapping ctrl data to /build/tnseq-transit-3.2.1/tests/data/test.prot_table, exp data to /build/tnseq-transit-3.2.1/tests/data/test.prot_table [resampling] Preprocessing Ctrl data... [resampling] Normalizing using: TTR [resampling] Preprocessing Exp data... [resampling] Normalizing using: TTR [resampling] Running Resampling Method... 2.0% [resampling] Running Resampling Method... 3.9% [resampling] Running Resampling Method... 5.9% [resampling] Running Resampling Method... 7.8% [resampling] Running Resampling Method... 9.8% [resampling] Running Resampling Method... 11.8% [resampling] Running Resampling Method... 13.7% [resampling] Running Resampling Method... 15.7% [resampling] Running Resampling Method... 17.6% [resampling] Running Resampling Method... 19.6% [resampling] Running Resampling Method... 21.6% [resampling] Running Resampling Method... 23.5% [resampling] Running Resampling Method... 25.5% [resampling] Running Resampling Method... 27.5% [resampling] Running Resampling Method... 29.4% [resampling] Running Resampling Method... 31.4% [resampling] Running Resampling Method... 33.3% [resampling] Running Resampling Method... 35.3% [resampling] Running Resampling Method... 37.3% [resampling] Running Resampling Method... 39.2% [resampling] Running Resampling Method... 41.2% [resampling] Running Resampling Method... 43.1% [resampling] Running Resampling Method... 45.1% [resampling] Running Resampling Method... 47.1% [resampling] Running Resampling Method... 49.0% [resampling] Running Resampling Method... 51.0% [resampling] Running Resampling Method... 52.9% [resampling] Running Resampling Method... 54.9% [resampling] Running Resampling Method... 56.9% [resampling] Running Resampling Method... 58.8% [resampling] Running Resampling Method... 60.8% [resampling] Running Resampling Method... 62.7% [resampling] Running Resampling Method... 64.7% [resampling] Running Resampling Method... 66.7% [resampling] Running Resampling Method... 68.6% [resampling] Running Resampling Method... 70.6% [resampling] Running Resampling Method... 72.5% [resampling] Running Resampling Method... 74.5% [resampling] Running Resampling Method... 76.5% [resampling] Running Resampling Method... 78.4% [resampling] Running Resampling Method... 80.4% [resampling] Running Resampling Method... 82.4% [resampling] Running Resampling Method... 84.3% [resampling] Running Resampling Method... 86.3% [resampling] Running Resampling Method... 88.2% [resampling] Running Resampling Method... 90.2% [resampling] Running Resampling Method... 92.2% [resampling] Running Resampling Method... 94.1% [resampling] Running Resampling Method... 96.1% [resampling] Running Resampling Method... 98.0% [resampling] Running Resampling Method... 100.0% ok test_utest (tests.test_analysis_methods.TestMethods) ... [resampling] [resampling] Performing Benjamini-Hochberg Correction [resampling] Adding File: /build/tnseq-transit-3.2.1/tests/testoutput.txt [resampling] Finished resampling Method Removing histogram files Removing output file... #################### tests.test_analysis_methods.TestMethods.test_utest #################### [utest] Starting Mann-Whitney U-test Method [utest] Getting Data [utest] Normalizing using: TTR [utest] Running Mann-Whitney U-test Method... 2.0% [utest] Running Mann-Whitney U-test Method... 3.9% [utest] Running Mann-Whitney U-test Method... 5.9% [utest] Running Mann-Whitney U-test Method... 7.8% [utest] Running Mann-Whitney U-test Method... 9.8% [utest] Running Mann-Whitney U-test Method... 11.8% [utest] Running Mann-Whitney U-test Method... 13.7% [utest] Running Mann-Whitney U-test Method... 15.7% [utest] Running Mann-Whitney U-test Method... 17.6% [utest] Running Mann-Whitney U-test Method... 19.6% [utest] Running Mann-Whitney U-test Method... 21.6% [utest] Running Mann-Whitney U-test Method... 23.5% [utest] Running Mann-Whitney U-test Method... 25.5% [utest] Running Mann-Whitney U-test Method... 27.5% [utest] Running Mann-Whitney U-test Method... 29.4% [utest] Running Mann-Whitney U-test Method... 31.4% [utest] Running Mann-Whitney U-test Method... 33.3% [utest] Running Mann-Whitney U-test Method... 35.3% [utest] Running Mann-Whitney U-test Method... 37.3% [utest] Running Mann-Whitney U-test Method... 39.2% [utest] Running Mann-Whitney U-test Method... 41.2% [utest] Running Mann-Whitney U-test Method... 43.1% [utest] Running Mann-Whitney U-test Method... 45.1% [utest] Running Mann-Whitney U-test Method... 47.1% [utest] Running Mann-Whitney U-test Method... 49.0% [utest] Running Mann-Whitney U-test Method... 51.0% [utest] Running Mann-Whitney U-test Method... 52.9% [utest] Running Mann-Whitney U-test Method... 54.9% [utest] Running Mann-Whitney U-test Method... 56.9% [utest] Running Mann-Whitney U-test Method... 58.8% [utest] Running Mann-Whitney U-test Method... 60.8% [utest] Running Mann-Whitney U-test Method... 62.7% [utest] Running Mann-Whitney U-test Method... 64.7% [utest] Running Mann-Whitney U-test Method... 66.7% [utest] Running Mann-Whitney U-test Method... 68.6% [utest] Running Mann-Whitney U-test Method... 70.6% [utest] Running Mann-Whitney U-test Method... 72.5% [utest] Running Mann-Whitney U-test Method... 74.5% [utest] Running Mann-Whitney U-test Method... 76.5% [utest] Running Mann-Whitney U-test Method... 78.4% [utest] Running Mann-Whitney U-test Method... 80.4% [utest] Running Mann-Whitney U-test Method... 82.4% [utest] Running Mann-Whitney U-test Method... 84.3% [utest] Running Mann-Whitney U-test Method... 86.3% [utest] Running Mann-Whitney U-test Method... 88.2% [utest] Running Mann-Whitney U-test Method... 90.2% [utest] Running Mann-Whitney U-test Method... 92.2% [utest] Running Mann-Whitney U-test Method... 94.1% [utest] Running Mann-Whitney U-test Method... 96.1% [utest] Running Mann-Whitney U-test Method... 98.0% [utest] Running Mann-Whitney U-test Method... 100.0% ok test_zinb (tests.test_analysis_methods.TestMethods) ... skipped 'requires R, rpy2' test_zinb_covariates (tests.test_analysis_methods.TestMethods) ... skipped 'requires R, rpy2' test_zinb_interactions (tests.test_analysis_methods.TestMethods) ... skipped 'requires R, rpy2' test_TTR (tests.test_norm_methods.TestNormMethods) ... ok test_nonorm (tests.test_norm_methods.TestNormMethods) ... ok test_resampling_NZMean (tests.test_norm_methods.TestNormMethods) ... [utest] [utest] Performing Benjamini-Hochberg Correction [utest] Adding File: /build/tnseq-transit-3.2.1/tests/testoutput.txt [utest] Finished Mann-Whitney U-test Method Removing output file... #################### tests.test_norm_methods.TestNormMethods.test_TTR #################### #################### tests.test_norm_methods.TestNormMethods.test_nonorm #################### #################### tests.test_norm_methods.TestNormMethods.test_resampling_NZMean #################### [resampling] Starting resampling Method [resampling] Getting Data [resampling] Preprocessing Ctrl data... [resampling] Normalizing using: nzmean [resampling] Preprocessing Exp data... [resampling] Normalizing using: nzmean [resampling] Running Resampling Method... 2.0% [resampling] Running Resampling Method... 3.9% [resampling] Running Resampling Method... 5.9% [resampling] Running Resampling Method... 7.8% [resampling] Running Resampling Method... 9.8% [resampling] Running Resampling Method... 11.8% [resampling] Running Resampling Method... 13.7% [resampling] Running Resampling Method... 15.7% [resampling] Running Resampling Method... 17.6% [resampling] Running Resampling Method... 19.6% [resampling] Running Resampling Method... 21.6% [resampling] Running Resampling Method... 23.5% [resampling] Running Resampling Method... 25.5% [resampling] Running Resampling Method... 27.5% [resampling] Running Resampling Method... 29.4% [resampling] Running Resampling Method... 31.4% [resampling] Running Resampling Method... 33.3% [resampling] Running Resampling Method... 35.3% [resampling] Running Resampling Method... 37.3% [resampling] Running Resampling Method... 39.2% [resampling] Running Resampling Method... 41.2% [resampling] Running Resampling Method... 43.1% [resampling] Running Resampling Method... 45.1% [resampling] Running Resampling Method... 47.1% [resampling] Running Resampling Method... 49.0% [resampling] Running Resampling Method... 51.0% [resampling] Running Resampling Method... 52.9% [resampling] Running Resampling Method... 54.9% [resampling] Running Resampling Method... 56.9% [resampling] Running Resampling Method... 58.8% [resampling] Running Resampling Method... 60.8% [resampling] Running Resampling Method... 62.7% [resampling] Running Resampling Method... 64.7% [resampling] Running Resampling Method... 66.7% [resampling] Running Resampling Method... 68.6% [resampling] Running Resampling Method... 70.6% [resampling] Running Resampling Method... 72.5% [resampling] Running Resampling Method... 74.5% [resampling] Running Resampling Method... 76.5% [resampling] Running Resampling Method... 78.4% [resampling] Running Resampling Method... 80.4% [resampling] Running Resampling Method... 82.4% [resampling] Running Resampling Method... 84.3% [resampling] Running Resampling Method... 86.3% [resampling] Running Resampling Method... 88.2% [resampling] Running Resampling Method... 90.2% [resampling] Running Resampling Method... 92.2% [resampling] Running Resampling Method... 94.1% [resampling] Running Resampling Method... 96.1% [resampling] Running Resampling Method... 98.0% [resampling] Running Resampling Method... 100.0% ok test_resampling_Quantile (tests.test_norm_methods.TestNormMethods) ... [resampling] [resampling] Performing Benjamini-Hochberg Correction [resampling] Adding File: /build/tnseq-transit-3.2.1/tests/testoutput.txt [resampling] Finished resampling Method Removing output file... #################### tests.test_norm_methods.TestNormMethods.test_resampling_Quantile #################### [resampling] Starting resampling Method [resampling] Getting Data [resampling] Preprocessing Ctrl data... [resampling] Normalizing using: quantile [resampling] Preprocessing Exp data... [resampling] Normalizing using: quantile [resampling] Running Resampling Method... 2.0% [resampling] Running Resampling Method... 3.9% [resampling] Running Resampling Method... 5.9% [resampling] Running Resampling Method... 7.8% [resampling] Running Resampling Method... 9.8% [resampling] Running Resampling Method... 11.8% [resampling] Running Resampling Method... 13.7% [resampling] Running Resampling Method... 15.7% [resampling] Running Resampling Method... 17.6% [resampling] Running Resampling Method... 19.6% [resampling] Running Resampling Method... 21.6% [resampling] Running Resampling Method... 23.5% [resampling] Running Resampling Method... 25.5% [resampling] Running Resampling Method... 27.5% [resampling] Running Resampling Method... 29.4% [resampling] Running Resampling Method... 31.4% [resampling] Running Resampling Method... 33.3% [resampling] Running Resampling Method... 35.3% [resampling] Running Resampling Method... 37.3% [resampling] Running Resampling Method... 39.2% [resampling] Running Resampling Method... 41.2% [resampling] Running Resampling Method... 43.1% [resampling] Running Resampling Method... 45.1% [resampling] Running Resampling Method... 47.1% [resampling] Running Resampling Method... 49.0% [resampling] Running Resampling Method... 51.0% [resampling] Running Resampling Method... 52.9% [resampling] Running Resampling Method... 54.9% [resampling] Running Resampling Method... 56.9% [resampling] Running Resampling Method... 58.8% [resampling] Running Resampling Method... 60.8% [resampling] Running Resampling Method... 62.7% [resampling] Running Resampling Method... 64.7% [resampling] Running Resampling Method... 66.7% [resampling] Running Resampling Method... 68.6% [resampling] Running Resampling Method... 70.6% [resampling] Running Resampling Method... 72.5% [resampling] Running Resampling Method... 74.5% [resampling] Running Resampling Method... 76.5% [resampling] Running Resampling Method... 78.4% [resampling] Running Resampling Method... 80.4% [resampling] Running Resampling Method... 82.4% [resampling] Running Resampling Method... 84.3% [resampling] Running Resampling Method... 86.3% [resampling] Running Resampling Method... 88.2% [resampling] Running Resampling Method... 90.2% [resampling] Running Resampling Method... 92.2% [resampling] Running Resampling Method... 94.1% [resampling] Running Resampling Method... 96.1% [resampling] Running Resampling Method... 98.0% [resampling] Running Resampling Method... 100.0% /build/tnseq-transit-3.2.1/tests/transit_test.py:75: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/testoutput.txt' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_resampling_TTR (tests.test_norm_methods.TestNormMethods) ... [resampling] [resampling] Performing Benjamini-Hochberg Correction [resampling] Adding File: /build/tnseq-transit-3.2.1/tests/testoutput.txt [resampling] Finished resampling Method Removing output file... #################### tests.test_norm_methods.TestNormMethods.test_resampling_TTR #################### [resampling] Starting resampling Method [resampling] Getting Data [resampling] Preprocessing Ctrl data... [resampling] Normalizing using: TTR [resampling] Preprocessing Exp data... [resampling] Normalizing using: TTR [resampling] Running Resampling Method... 2.0% [resampling] Running Resampling Method... 3.9% [resampling] Running Resampling Method... 5.9% [resampling] Running Resampling Method... 7.8% [resampling] Running Resampling Method... 9.8% [resampling] Running Resampling Method... 11.8% [resampling] Running Resampling Method... 13.7% [resampling] Running Resampling Method... 15.7% [resampling] Running Resampling Method... 17.6% [resampling] Running Resampling Method... 19.6% [resampling] Running Resampling Method... 21.6% [resampling] Running Resampling Method... 23.5% [resampling] Running Resampling Method... 25.5% [resampling] Running Resampling Method... 27.5% [resampling] Running Resampling Method... 29.4% [resampling] Running Resampling Method... 31.4% [resampling] Running Resampling Method... 33.3% [resampling] Running Resampling Method... 35.3% [resampling] Running Resampling Method... 37.3% [resampling] Running Resampling Method... 39.2% [resampling] Running Resampling Method... 41.2% [resampling] Running Resampling Method... 43.1% [resampling] Running Resampling Method... 45.1% [resampling] Running Resampling Method... 47.1% [resampling] Running Resampling Method... 49.0% [resampling] Running Resampling Method... 51.0% [resampling] Running Resampling Method... 52.9% [resampling] Running Resampling Method... 54.9% [resampling] Running Resampling Method... 56.9% [resampling] Running Resampling Method... 58.8% [resampling] Running Resampling Method... 60.8% [resampling] Running Resampling Method... 62.7% [resampling] Running Resampling Method... 64.7% [resampling] Running Resampling Method... 66.7% [resampling] Running Resampling Method... 68.6% [resampling] Running Resampling Method... 70.6% [resampling] Running Resampling Method... 72.5% [resampling] Running Resampling Method... 74.5% [resampling] Running Resampling Method... 76.5% [resampling] Running Resampling Method... 78.4% [resampling] Running Resampling Method... 80.4% [resampling] Running Resampling Method... 82.4% [resampling] Running Resampling Method... 84.3% [resampling] Running Resampling Method... 86.3% [resampling] Running Resampling Method... 88.2% [resampling] Running Resampling Method... 90.2% [resampling] Running Resampling Method... 92.2% [resampling] Running Resampling Method... 94.1% [resampling] Running Resampling Method... 96.1% [resampling] Running Resampling Method... 98.0% [resampling] Running Resampling Method... 100.0% ok test_resampling_TotReads (tests.test_norm_methods.TestNormMethods) ... [resampling] [resampling] Performing Benjamini-Hochberg Correction [resampling] Adding File: /build/tnseq-transit-3.2.1/tests/testoutput.txt [resampling] Finished resampling Method Removing output file... #################### tests.test_norm_methods.TestNormMethods.test_resampling_TotReads #################### [resampling] Starting resampling Method [resampling] Getting Data [resampling] Preprocessing Ctrl data... [resampling] Normalizing using: totreads [resampling] Preprocessing Exp data... [resampling] Normalizing using: totreads [resampling] Running Resampling Method... 2.0% [resampling] Running Resampling Method... 3.9% [resampling] Running Resampling Method... 5.9% [resampling] Running Resampling Method... 7.8% [resampling] Running Resampling Method... 9.8% [resampling] Running Resampling Method... 11.8% [resampling] Running Resampling Method... 13.7% [resampling] Running Resampling Method... 15.7% [resampling] Running Resampling Method... 17.6% [resampling] Running Resampling Method... 19.6% [resampling] Running Resampling Method... 21.6% [resampling] Running Resampling Method... 23.5% [resampling] Running Resampling Method... 25.5% [resampling] Running Resampling Method... 27.5% [resampling] Running Resampling Method... 29.4% [resampling] Running Resampling Method... 31.4% [resampling] Running Resampling Method... 33.3% [resampling] Running Resampling Method... 35.3% [resampling] Running Resampling Method... 37.3% [resampling] Running Resampling Method... 39.2% [resampling] Running Resampling Method... 41.2% [resampling] Running Resampling Method... 43.1% [resampling] Running Resampling Method... 45.1% [resampling] Running Resampling Method... 47.1% [resampling] Running Resampling Method... 49.0% [resampling] Running Resampling Method... 51.0% [resampling] Running Resampling Method... 52.9% [resampling] Running Resampling Method... 54.9% [resampling] Running Resampling Method... 56.9% [resampling] Running Resampling Method... 58.8% [resampling] Running Resampling Method... 60.8% [resampling] Running Resampling Method... 62.7% [resampling] Running Resampling Method... 64.7% [resampling] Running Resampling Method... 66.7% [resampling] Running Resampling Method... 68.6% [resampling] Running Resampling Method... 70.6% [resampling] Running Resampling Method... 72.5% [resampling] Running Resampling Method... 74.5% [resampling] Running Resampling Method... 76.5% [resampling] Running Resampling Method... 78.4% [resampling] Running Resampling Method... 80.4% [resampling] Running Resampling Method... 82.4% [resampling] Running Resampling Method... 84.3% [resampling] Running Resampling Method... 86.3% [resampling] Running Resampling Method... 88.2% [resampling] Running Resampling Method... 90.2% [resampling] Running Resampling Method... 92.2% [resampling] Running Resampling Method... 94.1% [resampling] Running Resampling Method... 96.1% [resampling] Running Resampling Method... 98.0% [resampling] Running Resampling Method... 100.0% ok test_resampling_ZINFNB (tests.test_norm_methods.TestNormMethods) ... [resampling] [resampling] Performing Benjamini-Hochberg Correction [resampling] Adding File: /build/tnseq-transit-3.2.1/tests/testoutput.txt [resampling] Finished resampling Method Removing output file... #################### tests.test_norm_methods.TestNormMethods.test_resampling_ZINFNB #################### [resampling] Starting resampling Method [resampling] Getting Data [resampling] Preprocessing Ctrl data... [resampling] Normalizing using: zinfnb [resampling] Preprocessing Exp data... [resampling] Normalizing using: zinfnb [resampling] Running Resampling Method... 2.0% [resampling] Running Resampling Method... 3.9% [resampling] Running Resampling Method... 5.9% [resampling] Running Resampling Method... 7.8% [resampling] Running Resampling Method... 9.8% [resampling] Running Resampling Method... 11.8% [resampling] Running Resampling Method... 13.7% [resampling] Running Resampling Method... 15.7% [resampling] Running Resampling Method... 17.6% [resampling] Running Resampling Method... 19.6% [resampling] Running Resampling Method... 21.6% [resampling] Running Resampling Method... 23.5% [resampling] Running Resampling Method... 25.5% [resampling] Running Resampling Method... 27.5% [resampling] Running Resampling Method... 29.4% [resampling] Running Resampling Method... 31.4% [resampling] Running Resampling Method... 33.3% [resampling] Running Resampling Method... 35.3% [resampling] Running Resampling Method... 37.3% [resampling] Running Resampling Method... 39.2% [resampling] Running Resampling Method... 41.2% [resampling] Running Resampling Method... 43.1% [resampling] Running Resampling Method... 45.1% [resampling] Running Resampling Method... 47.1% [resampling] Running Resampling Method... 49.0% [resampling] Running Resampling Method... 51.0% [resampling] Running Resampling Method... 52.9% [resampling] Running Resampling Method... 54.9% [resampling] Running Resampling Method... 56.9% [resampling] Running Resampling Method... 58.8% [resampling] Running Resampling Method... 60.8% [resampling] Running Resampling Method... 62.7% [resampling] Running Resampling Method... 64.7% [resampling] Running Resampling Method... 66.7% [resampling] Running Resampling Method... 68.6% [resampling] Running Resampling Method... 70.6% [resampling] Running Resampling Method... 72.5% [resampling] Running Resampling Method... 74.5% [resampling] Running Resampling Method... 76.5% [resampling] Running Resampling Method... 78.4% [resampling] Running Resampling Method... 80.4% [resampling] Running Resampling Method... 82.4% [resampling] Running Resampling Method... 84.3% [resampling] Running Resampling Method... 86.3% [resampling] Running Resampling Method... 88.2% [resampling] Running Resampling Method... 90.2% [resampling] Running Resampling Method... 92.2% [resampling] Running Resampling Method... 94.1% [resampling] Running Resampling Method... 96.1% [resampling] Running Resampling Method... 98.0% [resampling] Running Resampling Method... 100.0% ok test_resampling_nonorm (tests.test_norm_methods.TestNormMethods) ... [resampling] [resampling] Performing Benjamini-Hochberg Correction [resampling] Adding File: /build/tnseq-transit-3.2.1/tests/testoutput.txt [resampling] Finished resampling Method Removing output file... #################### tests.test_norm_methods.TestNormMethods.test_resampling_nonorm #################### [resampling] Starting resampling Method [resampling] Getting Data [resampling] Preprocessing Ctrl data... [resampling] Preprocessing Exp data... [resampling] Running Resampling Method... 2.0% [resampling] Running Resampling Method... 3.9% [resampling] Running Resampling Method... 5.9% [resampling] Running Resampling Method... 7.8% [resampling] Running Resampling Method... 9.8% [resampling] Running Resampling Method... 11.8% [resampling] Running Resampling Method... 13.7% [resampling] Running Resampling Method... 15.7% [resampling] Running Resampling Method... 17.6% [resampling] Running Resampling Method... 19.6% [resampling] Running Resampling Method... 21.6% [resampling] Running Resampling Method... 23.5% [resampling] Running Resampling Method... 25.5% [resampling] Running Resampling Method... 27.5% [resampling] Running Resampling Method... 29.4% [resampling] Running Resampling Method... 31.4% [resampling] Running Resampling Method... 33.3% [resampling] Running Resampling Method... 35.3% [resampling] Running Resampling Method... 37.3% [resampling] Running Resampling Method... 39.2% [resampling] Running Resampling Method... 41.2% [resampling] Running Resampling Method... 43.1% [resampling] Running Resampling Method... 45.1% [resampling] Running Resampling Method... 47.1% [resampling] Running Resampling Method... 49.0% [resampling] Running Resampling Method... 51.0% [resampling] Running Resampling Method... 52.9% [resampling] Running Resampling Method... 54.9% [resampling] Running Resampling Method... 56.9% [resampling] Running Resampling Method... 58.8% [resampling] Running Resampling Method... 60.8% [resampling] Running Resampling Method... 62.7% [resampling] Running Resampling Method... 64.7% [resampling] Running Resampling Method... 66.7% [resampling] Running Resampling Method... 68.6% [resampling] Running Resampling Method... 70.6% [resampling] Running Resampling Method... 72.5% [resampling] Running Resampling Method... 74.5% [resampling] Running Resampling Method... 76.5% [resampling] Running Resampling Method... 78.4% [resampling] Running Resampling Method... 80.4% [resampling] Running Resampling Method... 82.4% [resampling] Running Resampling Method... 84.3% [resampling] Running Resampling Method... 86.3% [resampling] Running Resampling Method... 88.2% [resampling] Running Resampling Method... 90.2% [resampling] Running Resampling Method... 92.2% [resampling] Running Resampling Method... 94.1% [resampling] Running Resampling Method... 96.1% [resampling] Running Resampling Method... 98.0% [resampling] Running Resampling Method... 100.0% ok test_cleanargs_flag_arguments_w_quotes (tests.test_pytransit_tools.TestTnSeqTools) ... ok test_cleanargs_flag_arguments_with_double_dash (tests.test_pytransit_tools.TestTnSeqTools) ... ok test_cleanargs_flag_without_arguments (tests.test_pytransit_tools.TestTnSeqTools) ... ok test_cleanargs_negative_arguments (tests.test_pytransit_tools.TestTnSeqTools) ... ok test_cleanargs_positional_arguments (tests.test_pytransit_tools.TestTnSeqTools) ... ok test_cleanargs_positional_arguments_w_quotes (tests.test_pytransit_tools.TestTnSeqTools) ... ok test_file_types (tests.test_pytransit_tools.TestTnSeqTools) ... ok test_genes_creation_fromdata (tests.test_pytransit_tools.TestTnSeqTools) ... /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:1287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/../src/pytransit/genomes/H37Rv.prot_table' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:1214: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/../src/pytransit/genomes/H37Rv.prot_table' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytransit/tnseq_tools.py:518: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/../src/pytransit/genomes/H37Rv.prot_table' mode='r' encoding='UTF-8'> for line in open(self.annotation): ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_genes_creation_fromwig (tests.test_pytransit_tools.TestTnSeqTools) ... ok test_normalization (tests.test_pytransit_tools.TestTnSeqTools) ... ok test_read_data (tests.test_pytransit_tools.TestTnSeqTools) ... ok test_tpp_flag_primer (tests.test_tpp.TestTPP) ... skipped 'requires local data file' test_tpp_multicontig_auto_replicon_ids (tests.test_tpp.TestTPP) ... [tn_preprocess] running pre-processing on /build/tnseq-transit-3.2.1/tests/data/test-multicontig-1.fastq and [tn_preprocess] protocol: Sassetti [tn_preprocess] transposon type: Himar1 [tn_preprocess] One reference genome specified: /build/tnseq-transit-3.2.1/tests/data/test-multicontig.fna, containing 3 records. [tn_preprocess] Autogenerating replicon_ids... [tn_preprocess] extracting reads... [tn_preprocess] fastq2reads: /build/tnseq-transit-3.2.1/tests/data/test-multicontig-1.fastq -> /build/tnseq-transit-3.2.1/tests/test_tpp_temp.reads1 /build/tnseq-transit-3.2.1/tests/../src/pytpp/tpp_tools.py:85: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/data/test-multicontig-1.fastq' mode='r' encoding='UTF-8'> for line in open(infile): ResourceWarning: Enable tracemalloc to get the object allocation traceback [tn_preprocess] assuming single-ended reads [tn_preprocess] creating /build/tnseq-transit-3.2.1/tests/test_tpp_temp.trimmed1 [tn_preprocess] prefix sequence: [tn_preprocess] Looking for start of Tn prefix within P,Q = [0,20] /build/tnseq-transit-3.2.1/tests/../src/pytpp/tpp_tools.py:276: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/test_tpp_temp.reads1' mode='r' encoding='UTF-8'> for line in open(infile): ResourceWarning: Enable tracemalloc to get the object allocation traceback [tn_preprocess] mapping reads using BWA...(this takes a couple of minutes) [tn_preprocess] /usr/bin/bwa index /build/tnseq-transit-3.2.1/tests/data/test-multicontig.fna b'[bwa_index] Pack FASTA... 0.07 sec' b'[bwa_index] Construct BWT for the packed sequence...' b'[bwa_index] 2.79 seconds elapse.' b'[bwa_index] Update BWT... 0.05 sec' b'[bwa_index] Pack forward-only FASTA... 0.04 sec' b'[bwa_index] Construct SA from BWT and Occ... 1.61 sec' b'[main] Version: 0.7.17-r1188' b'[main] CMD: /usr/bin/bwa index /build/tnseq-transit-3.2.1/tests/data/test-multicontig.fna' b'[main] Real time: 5.259 sec; CPU: 4.577 sec' b'' [tn_preprocess] /usr/bin/bwa mem /build/tnseq-transit-3.2.1/tests/data/test-multicontig.fna /build/tnseq-transit-3.2.1/tests/test_tpp_temp.trimmed1 > /build/tnseq-transit-3.2.1/tests/test_tpp_temp.sam b'[M::bwa_idx_load_from_disk] read 0 ALT contigs' b'[M::process] read 2500 sequences (304052 bp)...' b'[M::mem_process_seqs] Processed 2500 reads in 0.352 CPU sec, 0.487 real sec' b'[main] Version: 0.7.17-r1188' b'[main] CMD: /usr/bin/bwa mem /build/tnseq-transit-3.2.1/tests/data/test-multicontig.fna /build/tnseq-transit-3.2.1/tests/test_tpp_temp.trimmed1' b'[main] Real time: 0.519 sec; CPU: 0.382 sec' b'' [tn_preprocess] tabulating template counts and statistics for reference genome /build/tnseq-transit-3.2.1/tests/data/test-multicontig.fna /build/tnseq-transit-3.2.1/tests/../src/pytpp/tpp_tools.py:378: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/data/test-multicontig.fna' mode='r' encoding='UTF-8'> for line in open(filename): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytpp/tpp_tools.py:560: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/test_tpp_temp.sam' mode='r' encoding='UTF-8'> for line in open(sam): ResourceWarning: Enable tracemalloc to get the object allocation traceback [tn_preprocess] writing /build/tnseq-transit-3.2.1/tests/test_tpp_temp_1.wig [tn_preprocess] writing /build/tnseq-transit-3.2.1/tests/test_tpp_temp_2.wig [tn_preprocess] writing /build/tnseq-transit-3.2.1/tests/test_tpp_temp_3.wig /build/tnseq-transit-3.2.1/tests/../src/pytpp/tpp_tools.py:1108: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/test_tpp_temp.reads1' mode='r' encoding='UTF-8'> for line in open(vars.reads1): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytpp/tpp_tools.py:1117: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/test_tpp_temp.reads1' mode='r' encoding='UTF-8'> read_length = get_read_length(vars.base + ".reads1") ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.1/tests/../src/pytpp/tpp_tools.py:1118: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/test_tpp_temp.trimmed1' mode='r' encoding='UTF-8'> mean_r1_genomic = get_genomic_portion(vars.base + ".trimmed1") ResourceWarning: Enable tracemalloc to get the object allocation traceback [tn_preprocess] writing /build/tnseq-transit-3.2.1/tests/test_tpp_temp.tn_stats [tn_preprocess] Done. ok test_tpp_multicontig_empty_prefix (tests.test_tpp.TestTPP) ... [tn_preprocess] running pre-processing on /build/tnseq-transit-3.2.1/tests/data/test-multicontig-1.fastq and [tn_preprocess] protocol: Sassetti [tn_preprocess] transposon type: Himar1 [tn_preprocess] One reference genome specified: /build/tnseq-transit-3.2.1/tests/data/test-multicontig.fna, containing 3 records. [tn_preprocess] extracting reads... [tn_preprocess] fastq2reads: /build/tnseq-transit-3.2.1/tests/data/test-multicontig-1.fastq -> /build/tnseq-transit-3.2.1/tests/test_tpp_temp.reads1 [tn_preprocess] assuming single-ended reads [tn_preprocess] creating /build/tnseq-transit-3.2.1/tests/test_tpp_temp.trimmed1 [tn_preprocess] prefix sequence: [tn_preprocess] Looking for start of Tn prefix within P,Q = [0,20] [tn_preprocess] mapping reads using BWA...(this takes a couple of minutes) [tn_preprocess] /usr/bin/bwa mem /build/tnseq-transit-3.2.1/tests/data/test-multicontig.fna /build/tnseq-transit-3.2.1/tests/test_tpp_temp.trimmed1 > /build/tnseq-transit-3.2.1/tests/test_tpp_temp.sam b'[M::bwa_idx_load_from_disk] read 0 ALT contigs' b'[M::process] read 2500 sequences (304052 bp)...' b'[M::mem_process_seqs] Processed 2500 reads in 0.339 CPU sec, 0.352 real sec' b'[main] Version: 0.7.17-r1188' b'[main] CMD: /usr/bin/bwa mem /build/tnseq-transit-3.2.1/tests/data/test-multicontig.fna /build/tnseq-transit-3.2.1/tests/test_tpp_temp.trimmed1' b'[main] Real time: 0.374 sec; CPU: 0.367 sec' b'' [tn_preprocess] tabulating template counts and statistics for reference genome /build/tnseq-transit-3.2.1/tests/data/test-multicontig.fna [tn_preprocess] writing /build/tnseq-transit-3.2.1/tests/test_tpp_temp_a.wig [tn_preprocess] writing /build/tnseq-transit-3.2.1/tests/test_tpp_temp_b.wig [tn_preprocess] writing /build/tnseq-transit-3.2.1/tests/test_tpp_temp_c.wig [tn_preprocess] writing /build/tnseq-transit-3.2.1/tests/test_tpp_temp.tn_stats [tn_preprocess] Done. ok test_tpp_noflag_primer (tests.test_tpp.TestTPP) ... skipped 'requires local data file' test_tpp_protocol_mme1 (tests.test_tpp.TestTPP) ... skipped 'requires local data file' ---------------------------------------------------------------------- Ran 39 tests in 436.952s OK (skipped=6) [resampling] [resampling] Performing Benjamini-Hochberg Correction [resampling] Adding File: /build/tnseq-transit-3.2.1/tests/testoutput.txt [resampling] Finished resampling Method Removing output file... #################### tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_flag_arguments_w_quotes #################### #################### tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_flag_arguments_with_double_dash #################### #################### tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_flag_without_arguments #################### #################### tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_negative_arguments #################### #################### tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_positional_arguments #################### #################### tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_positional_arguments_w_quotes #################### #################### tests.test_pytransit_tools.TestTnSeqTools.test_file_types #################### #################### tests.test_pytransit_tools.TestTnSeqTools.test_genes_creation_fromdata #################### #################### tests.test_pytransit_tools.TestTnSeqTools.test_genes_creation_fromwig #################### #################### tests.test_pytransit_tools.TestTnSeqTools.test_normalization #################### #################### tests.test_pytransit_tools.TestTnSeqTools.test_read_data #################### #################### tests.test_tpp.TestTPP.test_tpp_multicontig_auto_replicon_ids #################### # title: Tn-Seq Pre-Processor # date: 08/02/2023 03:27:04 # command: python python3.9 -m unittest -v tests/test_analysis_methods.py tests/test_norm_methods.py tests/test_pytransit_tools.py tests/test_tpp.py tests/transit_test.py # transposon type: Himar1 # protocol type: Sassetti # bwa flags: # read1: /build/tnseq-transit-3.2.1/tests/data/test-multicontig-1.fastq # read2: # ref_genome: /build/tnseq-transit-3.2.1/tests/data/test-multicontig.fna # replicon_ids: 1,2,3 # total_reads (or read pairs): 2500 # trimmed_reads (reads with valid Tn prefix, and insert size>20bp): 2512 # reads1_mapped: 2116 # reads2_mapped: 0 # mapped_reads (both R1 and R2 map into genome, and R2 has a proper barcode): 2116 # read_count (TA sites only, for Himar1): # 1: 63 # 2: 0 # 3: 0 # template_count: # 1: 63 # 2: 0 # 3: 0 # template_ratio (reads per template): # 1: 1.00 # 2: 0.00 # 3: 0.00 # TA_sites: # 1: 89994 # 2: 646 # 3: 664 # TAs_hit: # 1: 63 # 2: 0 # 3: 0 # density: # 1: 0.001 # 2: 0.000 # 3: 0.000 # max_count (among templates): # 1: 1 # 2: 0 # 3: 0 # max_site (coordinate): # 1: 4977050 # 2: 57441 # 3: 38111 # NZ_mean (among templates): # 1: 1.0 # 2: 0.0 # 3: 0.0 # FR_corr (Fwd templates vs. Rev templates): # 1: -0.000 # 2: nan # 3: nan # BC_corr (reads vs. templates, summed over both strands): # 1: nan # 2: nan # 3: nan # primer_matches: 36 reads (1.4%) contain CTAGAGGGCCCAATTCGCCCTATAGTGAGT (Himar1) # vector_matches: 36 reads (1.4%) contain CTAGACCGTCCAGTCTGGCAGGCCGGAAAC (phiMycoMarT7) # adapter_matches: 57 reads (2.3%) contain GATCGGAAGAGCACACGTCTGAACTCCAGTCAC (Illumina/TruSeq index) # misprimed_reads: 17 reads (0.7%) contain Himar1 prefix but don't end in TGTTA # read_length: 125 bp # mean_R1_genomic_length: 121.6 bp Removing tpp test file Removing tpp test file Removing tpp test file Removing tpp test file Removing tpp test file Removing tpp test file Removing tpp test file Removing tpp test file #################### tests.test_tpp.TestTPP.test_tpp_multicontig_empty_prefix #################### # title: Tn-Seq Pre-Processor # date: 08/02/2023 03:27:08 # command: python python3.9 -m unittest -v tests/test_analysis_methods.py tests/test_norm_methods.py tests/test_pytransit_tools.py tests/test_tpp.py tests/transit_test.py # transposon type: Himar1 # protocol type: Sassetti # bwa flags: # read1: /build/tnseq-transit-3.2.1/tests/data/test-multicontig-1.fastq # read2: # ref_genome: /build/tnseq-transit-3.2.1/tests/data/test-multicontig.fna # replicon_ids: a,b,c # total_reads (or read pairs): 2500 # trimmed_reads (reads with valid Tn prefix, and insert size>20bp): 2512 # reads1_mapped: 2116 # reads2_mapped: 0 # mapped_reads (both R1 and R2 map into genome, and R2 has a proper barcode): 2116 # read_count (TA sites only, for Himar1): # a: 63 # b: 0 # c: 0 # template_count: # a: 63 # b: 0 # c: 0 # template_ratio (reads per template): # a: 1.00 # b: 0.00 # c: 0.00 # TA_sites: # a: 89994 # b: 646 # c: 664 # TAs_hit: # a: 63 # b: 0 # c: 0 # density: # a: 0.001 # b: 0.000 # c: 0.000 # max_count (among templates): # a: 1 # b: 0 # c: 0 # max_site (coordinate): # a: 4977050 # b: 57441 # c: 38111 # NZ_mean (among templates): # a: 1.0 # b: 0.0 # c: 0.0 # FR_corr (Fwd templates vs. Rev templates): # a: -0.000 # b: nan # c: nan # BC_corr (reads vs. templates, summed over both strands): # a: nan # b: nan # c: nan # primer_matches: 36 reads (1.4%) contain CTAGAGGGCCCAATTCGCCCTATAGTGAGT (Himar1) # vector_matches: 36 reads (1.4%) contain CTAGACCGTCCAGTCTGGCAGGCCGGAAAC (phiMycoMarT7) # adapter_matches: 57 reads (2.3%) contain GATCGGAAGAGCACACGTCTGAACTCCAGTCAC (Illumina/TruSeq index) # misprimed_reads: 17 reads (0.7%) contain Himar1 prefix but don't end in TGTTA # read_length: 125 bp # mean_R1_genomic_length: 121.6 bp Removing tpp test file Removing tpp test file Removing tpp test file Removing tpp test file Removing tpp test file Removing tpp test file Removing tpp test file Removing tpp test file make[1]: Leaving directory '/build/tnseq-transit-3.2.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/tnseq-transit-3.2.1/debian/tnseq-transit running install running build running build_py running egg_info writing tnseq_transit.egg-info/PKG-INFO writing dependency_links to tnseq_transit.egg-info/dependency_links.txt writing entry points to tnseq_transit.egg-info/entry_points.txt writing requirements to tnseq_transit.egg-info/requires.txt writing top-level names to tnseq_transit.egg-info/top_level.txt reading manifest file 'tnseq_transit.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'VERSION' warning: no files found matching '*.html' under directory 'src/pytransit/doc/build/html' warning: no files found matching '*.png' under directory 'src/pytransit/doc/build/html/_images' warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_modules' warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_static' writing manifest file 'tnseq_transit.egg-info/SOURCES.txt' running install_lib creating /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr creating /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib creating /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9 creating /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages creating /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytpp copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytpp/__init__.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytpp copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytpp/__main__.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytpp copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytpp/tpp_gui.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytpp copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytpp/tpp_tools.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytpp creating /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit creating /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/genomes/mc2_155_tamu.prot_table -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/genomes/mc2_155_tamu.fna -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/genomes/genomes.html -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/genomes/H37RvMA2.prot_table -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/genomes/H37RvMA2.fna -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/genomes/H37RvBD_mod3.prot_table -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/genomes/H37RvBD.prot_table -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/genomes/H37RvBD.fna -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/genomes/H37Rv.prot_table -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/genomes/H37Rv.fna -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/genomes/BCG.prot_table -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/genomes/BCG.fna -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes creating /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data/smeg_GO_terms.txt -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data/sanger_roles.dat -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data/samples_metadata_cg_interactions.txt -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data/samples_metadata_cg_covar.txt -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data/samples_metadata_cg.txt -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data/glycerol_H37Rv_rep2.wig -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data/glycerol_H37Rv_rep1.wig -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data/glycerol_H37Rv_merged.wig -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data/gene_ontology.1_2.3-11-18.obo -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data/cholesterol_glycerol_combined.dat -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data/cholesterol_H37Rv_rep3.wig -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data/cholesterol_H37Rv_rep2.wig -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data/cholesterol_H37Rv_rep1.wig -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data/cholesterol_H37Rv_merged.wig -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data/README.md -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data/H37Rv_sanger_roles.dat -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data/H37Rv_GO_terms.txt -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data/H37Rv_COG_roles.dat -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data/H37Rv.sanger_associated_RVS.csv -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data/GO_terms_for_each_Rv.obo-3-11-18.txt -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data/GO_term_names.dat -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data/GO_associated_Rvs.csv -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data/GO_associated_Rvs-3-11-18.txt -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/data/COG_roles.dat -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data creating /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis/__init__.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis/anova.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis/base.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis/binomial.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis/corrplot.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis/example.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis/gi.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis/griffin.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis/gumbel.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis/heatmap.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis/hmm.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis/norm.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis/normalize.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis/pathway_enrichment.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis/rankproduct.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis/resampling.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis/tn5gaps.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis/tnseq_stats.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis/utest.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/analysis/zinb.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis creating /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/convert copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/convert/__init__.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/convert copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/convert/base.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/convert copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/convert/gff_to_prot_table.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/convert creating /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/export/__init__.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/export/base.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/export/combined_wig.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/export/igv.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/export/mean_counts.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/export/prot_table.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/__init__.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/__main__.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/draw_trash.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/fileDisplay.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/images.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/norm_tools.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/qcDisplay.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/stat_tools.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/tnseq_tools.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/transit_gui.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/transit_tools.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/trash.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit copying /build/tnseq-transit-3.2.1/.pybuild/cpython3_3.9/build/pytransit/view_trash.py -> /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytpp/__init__.py to __init__.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytpp/__main__.py to __main__.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytpp/tpp_gui.py to tpp_gui.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytpp/tpp_tools.py to tpp_tools.cpython-39.pyc /usr/lib/python3.9/dist-packages/pytpp/tpp_tools.py:648: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.9/dist-packages/pytpp/tpp_tools.py:651: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/__init__.py to __init__.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/anova.py to anova.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/base.py to base.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/binomial.py to binomial.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/corrplot.py to corrplot.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/example.py to example.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/gi.py to gi.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/griffin.py to griffin.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/gumbel.py to gumbel.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/heatmap.py to heatmap.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/hmm.py to hmm.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/norm.py to norm.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/normalize.py to normalize.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/pathway_enrichment.py to pathway_enrichment.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/rankproduct.py to rankproduct.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/resampling.py to resampling.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/tn5gaps.py to tn5gaps.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/tnseq_stats.py to tnseq_stats.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/utest.py to utest.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/zinb.py to zinb.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/convert/__init__.py to __init__.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/convert/base.py to base.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/convert/gff_to_prot_table.py to gff_to_prot_table.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export/__init__.py to __init__.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export/base.py to base.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export/combined_wig.py to combined_wig.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export/igv.py to igv.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export/mean_counts.py to mean_counts.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export/prot_table.py to prot_table.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/__init__.py to __init__.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/__main__.py to __main__.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/draw_trash.py to draw_trash.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/fileDisplay.py to fileDisplay.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/images.py to images.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/norm_tools.py to norm_tools.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/qcDisplay.py to qcDisplay.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/stat_tools.py to stat_tools.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/tnseq_tools.py to tnseq_tools.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/transit_gui.py to transit_gui.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/transit_tools.py to transit_tools.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/trash.py to trash.cpython-39.pyc byte-compiling /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/view_trash.py to view_trash.cpython-39.pyc running install_egg_info Copying tnseq_transit.egg-info to /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/lib/python3.9/dist-packages/tnseq_transit-3.2.1.egg-info Skipping SOURCES.txt running install_scripts Installing tpp script to /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/bin Installing transit script to /build/tnseq-transit-3.2.1/debian/tnseq-transit/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/tnseq-transit-3.2.1' dh_install mv debian/tnseq-transit/usr/bin/tpp debian/tnseq-transit/usr/bin/transit-tpp make[1]: Leaving directory '/build/tnseq-transit-3.2.1' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'tnseq-transit' in '../tnseq-transit_3.2.1-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../tnseq-transit_3.2.1-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/794524 and its subdirectories I: Current time: Wed Aug 2 03:28:05 -12 2023 I: pbuilder-time-stamp: 1690990085 Wed Aug 2 15:28:07 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Wed Aug 2 15:28:07 UTC 2023 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Wed Aug 2 15:34:05 UTC 2023 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Wed Aug 2 15:34:06 UTC 2023 I: tnseq-transit_3.2.1-1_amd64.changes: Format: 1.8 Date: Thu, 24 Dec 2020 23:44:18 +0530 Source: tnseq-transit Binary: tnseq-transit Architecture: amd64 Version: 3.2.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: tnseq-transit - statistical calculations of essentiality of genes or genomic regi Changes: tnseq-transit (3.2.1-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.1 (routine-update) Checksums-Sha1: 494c449647401cbeecd1c99b1c3829c60d2807cc 7257 tnseq-transit_3.2.1-1_amd64.buildinfo 5bcf8f0b6671a6a3be1aabb8f45553985f5c78ba 8954788 tnseq-transit_3.2.1-1_amd64.deb Checksums-Sha256: d701507cc88418addab9d716d2c41d0f12aa8049f5e3b2a7c2b36300918b96f7 7257 tnseq-transit_3.2.1-1_amd64.buildinfo 3bf5d90afbd40e1f6f7633ad4c051b799390b0668dedb524237dede6731c043e 8954788 tnseq-transit_3.2.1-1_amd64.deb Files: 1e0316da4de669d2fea849c8e5763895 7257 science optional tnseq-transit_3.2.1-1_amd64.buildinfo 7588d7d366faa6da023ff66e0e436665 8954788 science optional tnseq-transit_3.2.1-1_amd64.deb Wed Aug 2 15:34:07 UTC 2023 I: diffoscope 243 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.r2rmUt7B/tnseq-transit_3.2.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.r2rmUt7B/tnseq-transit_3.2.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.r2rmUt7B/tnseq-transit_3.2.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.r2rmUt7B/b1/tnseq-transit_3.2.1-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.r2rmUt7B/b2/tnseq-transit_3.2.1-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.294s) 0.294s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.086s) 0.086s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Wed Aug 2 15:34:08 UTC 2023 I: diffoscope 243 found no differences in the changes files, and a .buildinfo file also exists. Wed Aug 2 15:34:08 UTC 2023 I: tnseq-transit from bullseye built successfully and reproducibly on amd64. Wed Aug 2 15:34:09 UTC 2023 I: Submitting .buildinfo files to external archives: Wed Aug 2 15:34:09 UTC 2023 I: Submitting 8.0K b1/tnseq-transit_3.2.1-1_amd64.buildinfo.asc Wed Aug 2 15:34:10 UTC 2023 I: Submitting 8.0K b2/tnseq-transit_3.2.1-1_amd64.buildinfo.asc Wed Aug 2 15:34:12 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Aug 2 15:34:12 UTC 2023 I: Done submitting .buildinfo files. Wed Aug 2 15:34:12 UTC 2023 I: Removing signed tnseq-transit_3.2.1-1_amd64.buildinfo.asc files: removed './b1/tnseq-transit_3.2.1-1_amd64.buildinfo.asc' removed './b2/tnseq-transit_3.2.1-1_amd64.buildinfo.asc'