Mon Jan 10 05:10:30 UTC 2022 I: starting to build schroedinger-coordgenlibs/bullseye/amd64 on jenkins on '2022-01-10 05:10' Mon Jan 10 05:10:30 UTC 2022 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_5/49727/console.log Mon Jan 10 05:10:30 UTC 2022 I: Downloading source for bullseye/schroedinger-coordgenlibs=1.4.2-1 --2022-01-10 05:10:30-- http://cdn-fastly.deb.debian.org/debian/pool/main/s/schroedinger-coordgenlibs/schroedinger-coordgenlibs_1.4.2-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2301 (2.2K) Saving to: ‘schroedinger-coordgenlibs_1.4.2-1.dsc’ 0K .. 100% 193M=0s 2022-01-10 05:10:30 (193 MB/s) - ‘schroedinger-coordgenlibs_1.4.2-1.dsc’ saved [2301/2301] Mon Jan 10 05:10:30 UTC 2022 I: schroedinger-coordgenlibs_1.4.2-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: schroedinger-coordgenlibs Binary: libcoordgen-dev, libcoordgen1 Architecture: any Version: 1.4.2-1 Maintainer: Debian Science Team Uploaders: Steffen Moeller , Homepage: https://github.com/schrodinger/coordgenlibs Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/science-team/schroedinger-coordgenlibs Vcs-Git: https://salsa.debian.org/science-team/schroedinger-coordgenlibs.git Build-Depends: cmake, debhelper-compat (= 13), libboost-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-test-dev, libmaeparser-dev, zlib1g-dev Package-List: libcoordgen-dev deb libdevel optional arch=any libcoordgen1 deb libs optional arch=any Checksums-Sha1: cd6b1a6be1e1735324625e21192b53ec475f5667 155306 schroedinger-coordgenlibs_1.4.2.orig.tar.gz a0e900995abdab2dc8de782c23f9787f33dd498c 3400 schroedinger-coordgenlibs_1.4.2-1.debian.tar.xz Checksums-Sha256: de8886db30fbb78d08d1532c21e710c5a967e5927e46866f07a9f7eab49d8b3c 155306 schroedinger-coordgenlibs_1.4.2.orig.tar.gz 85e29c37d5f8c1c67080ac495f9abe029b9827879744a4f7597c33289d930875 3400 schroedinger-coordgenlibs_1.4.2-1.debian.tar.xz Files: 47aa5fe6d8186b6c8d3b871d4400218a 155306 schroedinger-coordgenlibs_1.4.2.orig.tar.gz 9bbb6e8b0b18f58e42898d7b7ce43e82 3400 schroedinger-coordgenlibs_1.4.2-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAl+NZxwSHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHfgEP/iNUbz1tilTHbLQMuNQw4NZbjZOiB9+e /bVGj9EhLF9mrjnoh9k0uSAHNaoTRlK9SI6XtCbEh0RY68jY3wcFpdsyOygInTqY ocuGqDIdJRIkgFnRLEce5gMhXHoTVFwhYT5sSWLDhZkOjmqc5LLxuNuqzO2nxmdx W3TG7/lRpj/Cj2ZSCIO9yyGnyfCdtJBfQHQ9YyrQJEhOHVUccHPxjkb24ay9nfyI oESd8NqXO1nxbxBXCl4sR0LwGhzLh8cI2RrI0y2VzY+LVejzrZKpNO3lIbh1cpL7 D94ESj0cmEEg0Q9LvusHUoQtBMq2/9vnk1rrwWwE9gTyvAnI0hLMNboafFDh1TMo O2EROnhTtBF9lKFiseHjOlh7hqKXbr02fGvclpMSngX9s8mXF6myZ1KifTVmzgYM xgjD8Hz8GSL3f9kKSnQAZCY28gy2ZrDOZI/cgpj+FgTODmeEHBCz25ShJHuYGtJ/ pwd1hQ38ypQdhf2ruIFpSnJs/IZRS6kc3aSTx07Um+IIcAnHGB+QU/CByv/bJBdh VdygY28iGShPo9nZOHcOkbw+Q+PZphTaK6T/c7gQ3hDHpe8R3uxBVGT2IJqg8xTV yzTMjxELhLtJ1srI+ettcHz4CI7GIlSoVvrkk+dLNZIGFMCDNBL2pw3ljA8JDwp1 aYdY5Jx/IbV4 =URuR -----END PGP SIGNATURE----- Mon Jan 10 05:10:30 UTC 2022 I: Checking whether the package is not for us Mon Jan 10 05:10:30 UTC 2022 I: Starting 1st build on remote node ionos11-amd64.debian.net. Mon Jan 10 05:10:30 UTC 2022 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Mon Jan 10 05:12:13 UTC 2022 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jan 9 17:10:32 -12 2022 I: pbuilder-time-stamp: 1641791432 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [schroedinger-coordgenlibs_1.4.2-1.dsc] I: copying [./schroedinger-coordgenlibs_1.4.2.orig.tar.gz] I: copying [./schroedinger-coordgenlibs_1.4.2-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.lK_VCckL/trustedkeys.kbx': General error gpgv: Signature made Sun Oct 18 22:14:52 2020 -12 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./schroedinger-coordgenlibs_1.4.2-1.dsc dpkg-source: info: extracting schroedinger-coordgenlibs in schroedinger-coordgenlibs-1.4.2 dpkg-source: info: unpacking schroedinger-coordgenlibs_1.4.2.orig.tar.gz dpkg-source: info: unpacking schroedinger-coordgenlibs_1.4.2-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying cmake_standard_dirs.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3381188/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='7617d1762cf54dbb94729e73ae91ead8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3381188' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.anGuUjXLnf/pbuilderrc_KduH --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.anGuUjXLnf/b1 --logfile b1/build.log schroedinger-coordgenlibs_1.4.2-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 5.10.0-10-amd64 #1 SMP Debian 5.10.84-1 (2021-12-08) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 4 08:25 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jul 28 07:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 28 07:09 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jul 28 07:09 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 28 07:09 more -rwsr-xr-x 1 root root 55528 Jul 28 07:09 mount -rwxr-xr-x 1 root root 18664 Jul 28 07:09 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jan 6 21:24 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jul 28 07:09 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 28 07:09 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 28 07:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/3381188/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cmake, debhelper-compat (= 13), libboost-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-test-dev, libmaeparser-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-test-dev; however: Package libboost-test-dev is not installed. pbuilder-satisfydepends-dummy depends on libmaeparser-dev; however: Package libmaeparser-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.74-dev{a} libboost-filesystem1.74.0{a} libboost-iostreams-dev{a} libboost-iostreams1.74-dev{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost-test-dev{a} libboost-test1.74-dev{a} libboost-test1.74.0{a} libboost1.74-dev{a} libbrotli1{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu-dev{a} libicu67{a} libjsoncpp24{a} libldap-2.4-2{a} libmaeparser-dev{a} libmaeparser1{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps8{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 69 newly installed, 0 to remove and 0 not upgraded. Need to get 51.6 MB of archives. After unpacking 326 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2 [102 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libprocps8 amd64 2:3.3.17-5 [63.9 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 procps amd64 2:3.3.17-5 [502 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 cmake-data all 3.18.4-2+deb11u1 [1725 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libarchive13 amd64 3.4.3-2+b1 [343 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1 [69.1 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1 [106 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3 [232 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 libcurl4 amd64 7.74.0-1.3+deb11u1 [341 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libjsoncpp24 amd64 1.9.4-4 [78.9 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 librhash0 amd64 1.4.1-2 [129 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libuv1 amd64 1.40.0-2 [132 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 cmake amd64 3.18.4-2+deb11u1 [5593 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 icu-devtools amd64 67.1-7 [201 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 libboost1.74-dev amd64 1.74.0-9 [9534 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get: 54 http://deb.debian.org/debian bullseye/main amd64 libboost-filesystem1.74.0 amd64 1.74.0-9 [283 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 libboost-system1.74.0 amd64 1.74.0-9 [241 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 libboost-system1.74-dev amd64 1.74.0-9 [243 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 libboost-filesystem1.74-dev amd64 1.74.0-9 [304 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 libboost-filesystem-dev amd64 1.74.0.3 [4368 B] Get: 59 http://deb.debian.org/debian bullseye/main amd64 libboost-regex1.74.0 amd64 1.74.0-9 [516 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 libicu-dev amd64 67.1-7 [9597 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 libboost-regex1.74-dev amd64 1.74.0-9 [588 kB] Get: 62 http://deb.debian.org/debian bullseye/main amd64 libboost-iostreams1.74-dev amd64 1.74.0-9 [273 kB] Get: 63 http://deb.debian.org/debian bullseye/main amd64 libboost-iostreams-dev amd64 1.74.0.3 [4316 B] Get: 64 http://deb.debian.org/debian bullseye/main amd64 libboost-test1.74.0 amd64 1.74.0-9 [472 kB] Get: 65 http://deb.debian.org/debian bullseye/main amd64 libboost-test1.74-dev amd64 1.74.0-9 [547 kB] Get: 66 http://deb.debian.org/debian bullseye/main amd64 libboost-test-dev amd64 1.74.0.3 [4368 B] Get: 67 http://deb.debian.org/debian bullseye/main amd64 libmaeparser1 amd64 1.2.4-1+b1 [88.2 kB] Get: 68 http://deb.debian.org/debian bullseye/main amd64 libmaeparser-dev amd64 1.2.4-1+b1 [13.4 kB] Get: 69 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Fetched 51.6 MB in 1s (43.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_amd64.deb ... 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Preparing to unpack .../66-libmaeparser1_1.2.4-1+b1_amd64.deb ... Unpacking libmaeparser1:amd64 (1.2.4-1+b1) ... Selecting previously unselected package libmaeparser-dev:amd64. Preparing to unpack .../67-libmaeparser-dev_1.2.4-1+b1_amd64.deb ... Unpacking libmaeparser-dev:amd64 (1.2.4-1+b1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../68-zlib1g-dev_1%3a1.2.11.dfsg-2_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up libexpat1:amd64 (2.2.10-2) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up libboost-system1.74.0:amd64 (1.74.0-9) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up libboost1.74-dev:amd64 (1.74.0-9) ... Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libnghttp2-14:amd64 (1.43.0-1) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up libboost-filesystem1.74.0:amd64 (1.74.0-9) ... Setting up file (1:5.39-3) ... Setting up libmaeparser1:amd64 (1.2.4-1+b1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libuv1:amd64 (1.40.0-2) ... Setting up libboost-test1.74.0:amd64 (1.74.0-9) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libboost-system1.74-dev:amd64 (1.74.0-9) ... Setting up libncurses6:amd64 (6.2+20201114-2) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up libboost-regex1.74.0:amd64 (1.74.0-9) ... Setting up autopoint (0.21-4) ... Setting up icu-devtools (67.1-7) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1) ... Setting up libjsoncpp24:amd64 (1.9.4-4) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up librhash0:amd64 (1.4.1-2) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:amd64 (1.9.0-2) ... Setting up cmake-data (3.18.4-2+deb11u1) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up libboost-filesystem1.74-dev:amd64 (1.74.0-9) ... Setting up libboost-test1.74-dev:amd64 (1.74.0-9) ... Setting up libelf1:amd64 (0.183-1) ... Setting up libicu-dev:amd64 (67.1-7) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7) ... Setting up libboost-filesystem-dev:amd64 (1.74.0.3) ... Setting up libprocps8:amd64 (2:3.3.17-5) ... Setting up libmaeparser-dev:amd64 (1.2.4-1+b1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:amd64 (3.4.3-2+b1) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libboost-test-dev:amd64 (1.74.0.3) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up libboost-regex1.74-dev:amd64 (1.74.0-9) ... Setting up groff-base (1.22.4-6) ... Setting up procps (2:3.3.17-5) ... Setting up libcurl4:amd64 (7.74.0-1.3+deb11u1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libboost-iostreams1.74-dev:amd64 (1.74.0-9) ... Setting up dh-autoreconf (20) ... Setting up cmake (3.18.4-2+deb11u1) ... Setting up debhelper (13.3.4) ... Setting up libboost-iostreams-dev:amd64 (1.74.0.3) ... Processing triggers for libc-bin (2.31-13+deb11u2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/schroedinger-coordgenlibs-1.4.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../schroedinger-coordgenlibs_1.4.2-1_source.changes dpkg-buildpackage: info: source package schroedinger-coordgenlibs dpkg-buildpackage: info: source version 1.4.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libcoordgen-dev.substvars debian/libcoordgen1.substvars debian/files rm -fr -- debian/libcoordgen-dev/ debian/tmp/ debian/libcoordgen1/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/schroedinger-coordgenlibs-1.4.2' dh_auto_configure -- -DCMAKE_PREFIX_PATH=/usr/lib/x86_64-linux-gnu/cmake install -d /build/schroedinger-coordgenlibs-1.4.2/debian/.debhelper/generated/_source/home install -d obj-x86_64-linux-gnu cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_PREFIX_PATH=/usr/lib/x86_64-linux-gnu/cmake .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- maeparser include dir set as '/usr/include' -- maeparser libraries set as '/usr/lib/x86_64-linux-gnu/libmaeparser.so' -- Found compiled maeparser library at -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found version "1.74.0") -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found version "1.74.0") found components: filesystem -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found version "1.74.0") found components: filesystem unit_test_framework -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/schroedinger-coordgenlibs-1.4.2' dh_auto_build cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/schroedinger-coordgenlibs-1.4.2 -B/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu/CMakeFiles /build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu' make -f CMakeFiles/coordgen.dir/build.make CMakeFiles/coordgen.dir/depend make[3]: Entering directory '/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu' cd /build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/schroedinger-coordgenlibs-1.4.2 /build/schroedinger-coordgenlibs-1.4.2 /build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu /build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu /build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu/CMakeFiles/coordgen.dir/DependInfo.cmake --color= Dependee "/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu/CMakeFiles/coordgen.dir/DependInfo.cmake" is newer than depender "/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu/CMakeFiles/coordgen.dir/depend.internal". Dependee "/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu/CMakeFiles/coordgen.dir/depend.internal". Scanning dependencies of target coordgen make[3]: Leaving directory '/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu' make -f CMakeFiles/coordgen.dir/build.make CMakeFiles/coordgen.dir/build make[3]: Entering directory '/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu' [ 5%] Building CXX object CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -fdebug-prefix-map=/build/schroedinger-coordgenlibs-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -std=gnu++11 -o CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o -c /build/schroedinger-coordgenlibs-1.4.2/CoordgenFragmentBuilder.cpp [ 10%] Building CXX object CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o [ 15%] Building CXX object CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o [ 21%] Building CXX object CMakeFiles/coordgen.dir/CoordgenTemplates.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -fdebug-prefix-map=/build/schroedinger-coordgenlibs-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -std=gnu++11 -o CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o -c /build/schroedinger-coordgenlibs-1.4.2/CoordgenFragmenter.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -fdebug-prefix-map=/build/schroedinger-coordgenlibs-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -std=gnu++11 -o CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o -c /build/schroedinger-coordgenlibs-1.4.2/CoordgenMacrocycleBuilder.cpp [ 26%] Building CXX object CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o [ 31%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -fdebug-prefix-map=/build/schroedinger-coordgenlibs-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -std=gnu++11 -o CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o -c /build/schroedinger-coordgenlibs-1.4.2/CoordgenMinimizer.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -fdebug-prefix-map=/build/schroedinger-coordgenlibs-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -std=gnu++11 -o CMakeFiles/coordgen.dir/CoordgenTemplates.cpp.o -c /build/schroedinger-coordgenlibs-1.4.2/CoordgenTemplates.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -fdebug-prefix-map=/build/schroedinger-coordgenlibs-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -std=gnu++11 -o CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o -c /build/schroedinger-coordgenlibs-1.4.2/sketcherMinimizer.cpp [ 36%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -fdebug-prefix-map=/build/schroedinger-coordgenlibs-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -std=gnu++11 -o CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o -c /build/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerAtom.cpp [ 42%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -fdebug-prefix-map=/build/schroedinger-coordgenlibs-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -std=gnu++11 -o CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o -c /build/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerFragment.cpp [ 47%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o [ 52%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o [ 57%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o [ 63%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -fdebug-prefix-map=/build/schroedinger-coordgenlibs-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -std=gnu++11 -o CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o -c /build/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerBond.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -fdebug-prefix-map=/build/schroedinger-coordgenlibs-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -std=gnu++11 -o CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o -c /build/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerMarchingSquares.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -fdebug-prefix-map=/build/schroedinger-coordgenlibs-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -std=gnu++11 -o CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o -c /build/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerMolecule.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -fdebug-prefix-map=/build/schroedinger-coordgenlibs-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -std=gnu++11 -o CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o -c /build/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerResidue.cpp [ 68%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -fdebug-prefix-map=/build/schroedinger-coordgenlibs-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -std=gnu++11 -o CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o -c /build/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerResidueInteraction.cpp [ 73%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -fdebug-prefix-map=/build/schroedinger-coordgenlibs-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -std=gnu++11 -o CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o -c /build/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerRing.cpp [ 78%] Linking CXX shared library libcoordgen.so /usr/bin/cmake -E cmake_link_script CMakeFiles/coordgen.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/schroedinger-coordgenlibs-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libcoordgen.so.1 -o libcoordgen.so.1.4.2 CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o CMakeFiles/coordgen.dir/CoordgenTemplates.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o /usr/bin/cmake -E cmake_symlink_library libcoordgen.so.1.4.2 libcoordgen.so.1 libcoordgen.so make[3]: Leaving directory '/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu' [ 78%] Built target coordgen make -f example_dir/CMakeFiles/example.dir/build.make example_dir/CMakeFiles/example.dir/depend make -f test/CMakeFiles/test_coordgen.dir/build.make test/CMakeFiles/test_coordgen.dir/depend make[3]: Entering directory '/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu' cd /build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/schroedinger-coordgenlibs-1.4.2 /build/schroedinger-coordgenlibs-1.4.2/example_dir /build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu /build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu/example_dir /build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu/example_dir/CMakeFiles/example.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu' cd /build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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Dependee "/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu/example_dir/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu/example_dir/CMakeFiles/example.dir/depend.internal". Dependee "/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu/test/CMakeFiles/test_coordgen.dir/DependInfo.cmake" is newer than depender "/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu/test/CMakeFiles/test_coordgen.dir/depend.internal". Dependee "/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu/test/CMakeFiles/test_coordgen.dir/depend.internal". Scanning dependencies of target example Scanning dependencies of target test_coordgen make[3]: Leaving directory '/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu' make -f example_dir/CMakeFiles/example.dir/build.make example_dir/CMakeFiles/example.dir/build make -f test/CMakeFiles/test_coordgen.dir/build.make test/CMakeFiles/test_coordgen.dir/build make[3]: Entering directory '/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu' [ 84%] Building CXX object example_dir/CMakeFiles/example.dir/example.cpp.o cd /build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu/example_dir && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -g -O2 -fdebug-prefix-map=/build/schroedinger-coordgenlibs-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -o CMakeFiles/example.dir/example.cpp.o -c /build/schroedinger-coordgenlibs-1.4.2/example_dir/example.cpp [ 89%] Building CXX object test/CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o cd /build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DSOURCE_DIR=\"/build/schroedinger-coordgenlibs-1.4.2\" -DTEST_SAMPLES_PATH=\"/build/schroedinger-coordgenlibs-1.4.2/test\" -g -O2 -fdebug-prefix-map=/build/schroedinger-coordgenlibs-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -o CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o -c /build/schroedinger-coordgenlibs-1.4.2/test/test_coordgen.cpp [ 94%] Linking CXX executable example cd /build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu/example_dir && /usr/bin/cmake -E cmake_link_script CMakeFiles/example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/schroedinger-coordgenlibs-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/example.dir/example.cpp.o -o example -Wl,-rpath,/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu ../libcoordgen.so.1.4.2 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 make[3]: Leaving directory '/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu' [ 94%] Built target example [100%] Linking CXX executable test_coordgen cd /build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_coordgen.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/schroedinger-coordgenlibs-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o -o test_coordgen -Wl,-rpath,/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu ../libcoordgen.so.1.4.2 -lmaeparser /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 make[3]: Leaving directory '/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu' [100%] Built target test_coordgen make[2]: Leaving directory '/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu' dh_auto_test cd obj-x86_64-linux-gnu && make -j15 test ARGS\+=-j15 make[1]: Entering directory '/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process -j15 Test project /build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu Start 1: example Start 2: test_coordgen 1/2 Test #1: example .......................... Passed 0.01 sec 2/2 Test #2: test_coordgen .................... Passed 0.23 sec 100% tests passed, 0 tests failed out of 2 Total Test time (real) = 0.24 sec make[1]: Leaving directory '/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu' rm -fr -- /tmp/dh-xdg-rundir-5c4Dsvjh create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/libcoordgen-dev.substvars debian/libcoordgen1.substvars rm -fr -- debian/.debhelper/generated/libcoordgen-dev/ debian/libcoordgen-dev/ debian/tmp/ debian/.debhelper/generated/libcoordgen1/ debian/libcoordgen1/ dh_installdirs install -d debian/libcoordgen-dev/usr/include debian/libcoordgen-dev/usr/lib install -d debian/libcoordgen1/usr/lib dh_auto_install install -d /build/schroedinger-coordgenlibs-1.4.2/debian/tmp cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/schroedinger-coordgenlibs-1.4.2/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/schroedinger-coordgenlibs-1.4.2 -B/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/schroedinger-coordgenlibs-1.4.2/debian/tmp/usr/lib/x86_64-linux-gnu/libcoordgen.so.1.4.2 -- Installing: /build/schroedinger-coordgenlibs-1.4.2/debian/tmp/usr/lib/x86_64-linux-gnu/libcoordgen.so.1 -- Installing: /build/schroedinger-coordgenlibs-1.4.2/debian/tmp/usr/lib/x86_64-linux-gnu/libcoordgen.so -- Installing: /build/schroedinger-coordgenlibs-1.4.2/debian/tmp/usr/include/coordgen/CoordgenConfig.hpp -- Installing: /build/schroedinger-coordgenlibs-1.4.2/debian/tmp/usr/include/coordgen/CoordgenFragmentBuilder.h -- Installing: /build/schroedinger-coordgenlibs-1.4.2/debian/tmp/usr/include/coordgen/CoordgenFragmenter.h -- Installing: /build/schroedinger-coordgenlibs-1.4.2/debian/tmp/usr/include/coordgen/CoordgenMacrocycleBuilder.h -- Installing: /build/schroedinger-coordgenlibs-1.4.2/debian/tmp/usr/include/coordgen/CoordgenMinimizer.h -- Installing: /build/schroedinger-coordgenlibs-1.4.2/debian/tmp/usr/include/coordgen/sketcherMinimizerAtom.h -- Installing: /build/schroedinger-coordgenlibs-1.4.2/debian/tmp/usr/include/coordgen/sketcherMinimizerBendInteraction.h -- Installing: /build/schroedinger-coordgenlibs-1.4.2/debian/tmp/usr/include/coordgen/sketcherMinimizerBond.h -- Installing: /build/schroedinger-coordgenlibs-1.4.2/debian/tmp/usr/include/coordgen/sketcherMinimizerClashInteraction.h -- Installing: /build/schroedinger-coordgenlibs-1.4.2/debian/tmp/usr/include/coordgen/sketcherMinimizerEZConstrainInteraction.h -- Installing: /build/schroedinger-coordgenlibs-1.4.2/debian/tmp/usr/include/coordgen/sketcherMinimizerFragment.h -- Installing: /build/schroedinger-coordgenlibs-1.4.2/debian/tmp/usr/include/coordgen/sketcherMinimizer.h -- Installing: /build/schroedinger-coordgenlibs-1.4.2/debian/tmp/usr/include/coordgen/sketcherMinimizerInteraction.h -- Installing: /build/schroedinger-coordgenlibs-1.4.2/debian/tmp/usr/include/coordgen/sketcherMinimizerMarchingSquares.h -- Installing: /build/schroedinger-coordgenlibs-1.4.2/debian/tmp/usr/include/coordgen/sketcherMinimizerMaths.h -- Installing: /build/schroedinger-coordgenlibs-1.4.2/debian/tmp/usr/include/coordgen/sketcherMinimizerMolecule.h -- Installing: /build/schroedinger-coordgenlibs-1.4.2/debian/tmp/usr/include/coordgen/sketcherMinimizerResidue.h -- Installing: /build/schroedinger-coordgenlibs-1.4.2/debian/tmp/usr/include/coordgen/sketcherMinimizerResidueInteraction.h -- Installing: /build/schroedinger-coordgenlibs-1.4.2/debian/tmp/usr/include/coordgen/sketcherMinimizerRing.h -- Installing: /build/schroedinger-coordgenlibs-1.4.2/debian/tmp/usr/include/coordgen/sketcherMinimizerStretchInteraction.h -- Installing: /build/schroedinger-coordgenlibs-1.4.2/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/coordgen-config.cmake -- Installing: /build/schroedinger-coordgenlibs-1.4.2/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/coordgen-config-none.cmake make[1]: Leaving directory '/build/schroedinger-coordgenlibs-1.4.2/obj-x86_64-linux-gnu' dh_install cp --reflink=auto -a debian/tmp/usr/include/coordgen debian/libcoordgen-dev//usr/include/ install -d debian/libcoordgen-dev//usr/lib/x86_64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/cmake debian/tmp/usr/lib/x86_64-linux-gnu/libcoordgen.so debian/libcoordgen-dev//usr/lib/x86_64-linux-gnu/ install -d debian/libcoordgen-dev/usr/share/coordgen cp --reflink=auto -a ./templates.mae debian/libcoordgen-dev/usr/share/coordgen/ install -d debian/.debhelper/generated/libcoordgen-dev install -d debian/libcoordgen1//usr/lib/x86_64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libcoordgen.so.1 debian/tmp/usr/lib/x86_64-linux-gnu/libcoordgen.so.1.4.2 debian/libcoordgen1//usr/lib/x86_64-linux-gnu/ install -d debian/.debhelper/generated/libcoordgen1 dh_installdocs install -d debian/libcoordgen-dev/usr/share/doc/libcoordgen-dev install -p -m0644 debian/copyright debian/libcoordgen-dev/usr/share/doc/libcoordgen-dev/copyright install -d debian/libcoordgen1/usr/share/doc/libcoordgen1 cp --reflink=auto -a ./README.md debian/libcoordgen1/usr/share/doc/libcoordgen1 chmod -R u\+rw,go=rX debian/libcoordgen1/usr/share/doc install -p -m0644 debian/copyright debian/libcoordgen1/usr/share/doc/libcoordgen1/copyright dh_installchangelogs install -p -m0644 debian/changelog debian/libcoordgen1/usr/share/doc/libcoordgen1/changelog.Debian install -p -m0644 debian/changelog debian/libcoordgen-dev/usr/share/doc/libcoordgen-dev/changelog.Debian dh_installexamples install -d debian/libcoordgen-dev/usr/share/doc/libcoordgen-dev/examples cp --reflink=auto -a ./example_dir/example.cpp debian/libcoordgen-dev/usr/share/doc/libcoordgen-dev/examples dh_perl dh_link rm -f debian/libcoordgen-dev/usr/lib/x86_64-linux-gnu/libcoordgen.so ln -s libcoordgen.so.1 debian/libcoordgen-dev/usr/lib/x86_64-linux-gnu/libcoordgen.so rm -f debian/libcoordgen1/usr/lib/x86_64-linux-gnu/libcoordgen.so.1 ln -s libcoordgen.so.1.4.2 debian/libcoordgen1/usr/lib/x86_64-linux-gnu/libcoordgen.so.1 dh_strip_nondeterminism dh_compress cd debian/libcoordgen1 cd debian/libcoordgen-dev chmod a-x usr/share/doc/libcoordgen1/README.md usr/share/doc/libcoordgen1/changelog.Debian chmod a-x usr/share/doc/libcoordgen-dev/changelog.Debian gzip -9nf usr/share/doc/libcoordgen1/README.md usr/share/doc/libcoordgen1/changelog.Debian gzip -9nf usr/share/doc/libcoordgen-dev/changelog.Debian cd '/build/schroedinger-coordgenlibs-1.4.2' cd '/build/schroedinger-coordgenlibs-1.4.2' dh_fixperms find debian/libcoordgen1 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libcoordgen-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libcoordgen1/usr/share/doc -type f -a -true -a ! -regex 'debian/libcoordgen1/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcoordgen-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libcoordgen-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcoordgen1/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcoordgen-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcoordgen1 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcoordgen1/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libcoordgen-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcoordgen-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcoordgen-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing dh_dwz -a dwz -- debian/libcoordgen1/usr/lib/x86_64-linux-gnu/libcoordgen.so.1.4.2 dh_strip -a install -d debian/.debhelper/libcoordgen1/dbgsym-root/usr/lib/debug/.build-id/02 objcopy --only-keep-debug --compress-debug-sections debian/libcoordgen1/usr/lib/x86_64-linux-gnu/libcoordgen.so.1.4.2 debian/.debhelper/libcoordgen1/dbgsym-root/usr/lib/debug/.build-id/02/f97287342b76154fca12cbfec2493dc7765a81.debug chmod 0644 -- debian/.debhelper/libcoordgen1/dbgsym-root/usr/lib/debug/.build-id/02/f97287342b76154fca12cbfec2493dc7765a81.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcoordgen1/usr/lib/x86_64-linux-gnu/libcoordgen.so.1.4.2 objcopy --add-gnu-debuglink debian/.debhelper/libcoordgen1/dbgsym-root/usr/lib/debug/.build-id/02/f97287342b76154fca12cbfec2493dc7765a81.debug debian/libcoordgen1/usr/lib/x86_64-linux-gnu/libcoordgen.so.1.4.2 install -d debian/.debhelper/libcoordgen1/dbgsym-root/usr/share/doc ln -s libcoordgen1 debian/.debhelper/libcoordgen1/dbgsym-root/usr/share/doc/libcoordgen1-dbgsym dh_makeshlibs -a rm -f debian/libcoordgen-dev/DEBIAN/shlibs rm -f debian/libcoordgen1/DEBIAN/shlibs install -d debian/libcoordgen1/DEBIAN echo "libcoordgen 1 libcoordgen1 (>= 1.4.2)" >> debian/libcoordgen1/DEBIAN/shlibs chmod 0644 -- debian/libcoordgen1/DEBIAN/shlibs mv debian/.debhelper/generated/libcoordgen1/triggers.new debian/.debhelper/generated/libcoordgen1/triggers dh_shlibdeps -a dpkg-shlibdeps -Tdebian/libcoordgen1.substvars debian/libcoordgen1/usr/lib/x86_64-linux-gnu/libcoordgen.so.1.4.2 dh_installdeb install -d debian/libcoordgen-dev/DEBIAN install -p -m0644 debian/.debhelper/generated/libcoordgen1/triggers debian/libcoordgen1/DEBIAN/triggers dh_gencontrol echo misc:Depends= >> debian/libcoordgen-dev.substvars echo misc:Pre-Depends= >> debian/libcoordgen-dev.substvars dpkg-gencontrol -plibcoordgen-dev -ldebian/changelog -Tdebian/libcoordgen-dev.substvars -Pdebian/libcoordgen-dev echo misc:Depends= >> debian/libcoordgen1.substvars echo misc:Pre-Depends= >> debian/libcoordgen1.substvars install -d debian/.debhelper/libcoordgen1/dbgsym-root/DEBIAN dpkg-gencontrol -plibcoordgen1 -ldebian/changelog -Tdebian/libcoordgen1.substvars -Pdebian/.debhelper/libcoordgen1/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=libcoordgen1-dbgsym "-DDepends=libcoordgen1 (= \${binary:Version})" "-DDescription=debug symbols for libcoordgen1" -DBuild-Ids=02f97287342b76154fca12cbfec2493dc7765a81 -DSection=debug -UReplaces -UBreaks chmod 0644 -- debian/libcoordgen-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/libcoordgen1/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibcoordgen1 -ldebian/changelog -Tdebian/libcoordgen1.substvars -Pdebian/libcoordgen1 chmod 0644 -- debian/libcoordgen1/DEBIAN/control dh_md5sums cd debian/libcoordgen-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libcoordgen1 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libcoordgen1/DEBIAN/md5sums cd debian/.debhelper/libcoordgen1/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libcoordgen1/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/libcoordgen-dev/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/libcoordgen-dev .. dpkg-deb --root-owner-group --build debian/libcoordgen1 .. dpkg-deb --root-owner-group --build debian/.debhelper/libcoordgen1/dbgsym-root .. dpkg-deb: building package 'libcoordgen1-dbgsym' in '../libcoordgen1-dbgsym_1.4.2-1_amd64.deb'. dpkg-deb: building package 'libcoordgen-dev' in '../libcoordgen-dev_1.4.2-1_amd64.deb'. dpkg-deb: building package 'libcoordgen1' in '../libcoordgen1_1.4.2-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../schroedinger-coordgenlibs_1.4.2-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3381188 and its subdirectories I: Current time: Sun Jan 9 17:12:13 -12 2022 I: pbuilder-time-stamp: 1641791533 Mon Jan 10 05:12:13 UTC 2022 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Mon Jan 10 05:12:13 UTC 2022 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Mon Jan 10 05:13:07 UTC 2022 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Mon Jan 10 05:13:07 UTC 2022 I: schroedinger-coordgenlibs_1.4.2-1_amd64.changes: Format: 1.8 Date: Mon, 19 Oct 2020 06:10:08 -0400 Source: schroedinger-coordgenlibs Binary: libcoordgen-dev libcoordgen1 libcoordgen1-dbgsym Architecture: amd64 Version: 1.4.2-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Team Changed-By: Andrius Merkys Description: libcoordgen-dev - 2D coordinate generation for chemical compounds - header files libcoordgen1 - 2D coordinate generation for chemical compounds Changes: schroedinger-coordgenlibs (1.4.2-1) unstable; urgency=medium . * Team upload. * New upstream version 1.4.2 * Refreshing cmake_standard_dirs.patch. * Bumping Standards-Version (no changes). Checksums-Sha1: 15d5f3195a45a458514282d01c0615669d8ef878 45152 libcoordgen-dev_1.4.2-1_amd64.deb edd5557b291f6433d46344cb5ac26b9b2ad9075e 3358112 libcoordgen1-dbgsym_1.4.2-1_amd64.deb 8fc5275fc3ccf2f69d3bb0e929281970c341696a 200724 libcoordgen1_1.4.2-1_amd64.deb a5992dff8bbf42ae34ce9dc319d633b35a9fe27e 6847 schroedinger-coordgenlibs_1.4.2-1_amd64.buildinfo Checksums-Sha256: ad1baf9b3af67fa97d0880a993d646a3f072b0d9d441a82ced8c55590b99ee41 45152 libcoordgen-dev_1.4.2-1_amd64.deb 0123b802bf6f1d03d4847f245d65ca1702f364c184509277b0342a513e5d86a3 3358112 libcoordgen1-dbgsym_1.4.2-1_amd64.deb 6664756315b40bad06d480ac389040663472386f5b443c101653eb99bd2ae5dc 200724 libcoordgen1_1.4.2-1_amd64.deb ed4e0f34a512860e1f11043239ce002e6d690f2be2f627c6edba6a5c58fcee7c 6847 schroedinger-coordgenlibs_1.4.2-1_amd64.buildinfo Files: 8bcc7be5a4e6313091d0c7f04c99e236 45152 libdevel optional libcoordgen-dev_1.4.2-1_amd64.deb 308a87d932e331276de6f3c349ff94ec 3358112 debug optional libcoordgen1-dbgsym_1.4.2-1_amd64.deb 879b5aaf4df49a6293790c8397688cf7 200724 libs optional libcoordgen1_1.4.2-1_amd64.deb ff023e1fa88d6aee3318d62440e5b1e1 6847 libs optional schroedinger-coordgenlibs_1.4.2-1_amd64.buildinfo Mon Jan 10 05:13:08 UTC 2022 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.anGuUjXLnf/schroedinger-coordgenlibs_1.4.2-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.anGuUjXLnf/schroedinger-coordgenlibs_1.4.2-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.anGuUjXLnf/schroedinger-coordgenlibs_1.4.2-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.anGuUjXLnf/b1/schroedinger-coordgenlibs_1.4.2-1_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.anGuUjXLnf/b2/schroedinger-coordgenlibs_1.4.2-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.354s) 0.354s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.069s) 0.069s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Mon Jan 10 05:13:10 UTC 2022 I: found no differences in the changes files, and a .buildinfo file also exists. Mon Jan 10 05:13:10 UTC 2022 I: schroedinger-coordgenlibs from bullseye built successfully and reproducibly on amd64. Mon Jan 10 05:13:11 UTC 2022 I: Submitting .buildinfo files to external archives: Mon Jan 10 05:13:11 UTC 2022 I: Submitting 8.0K b1/schroedinger-coordgenlibs_1.4.2-1_amd64.buildinfo.asc Mon Jan 10 05:13:13 UTC 2022 I: Submitting 8.0K b2/schroedinger-coordgenlibs_1.4.2-1_amd64.buildinfo.asc Mon Jan 10 05:13:13 UTC 2022 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Jan 10 05:13:13 UTC 2022 I: Done submitting .buildinfo files. Mon Jan 10 05:13:13 UTC 2022 I: Removing signed schroedinger-coordgenlibs_1.4.2-1_amd64.buildinfo.asc files: removed './b1/schroedinger-coordgenlibs_1.4.2-1_amd64.buildinfo.asc' removed './b2/schroedinger-coordgenlibs_1.4.2-1_amd64.buildinfo.asc'