Mon Jan 10 04:50:41 UTC 2022 I: starting to build racon/bullseye/amd64 on jenkins on '2022-01-10 04:50' Mon Jan 10 04:50:41 UTC 2022 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_30/49408/console.log Mon Jan 10 04:50:41 UTC 2022 I: Downloading source for bullseye/racon=1.4.20-1 --2022-01-10 04:50:41-- http://cdn-fastly.deb.debian.org/debian/pool/main/r/racon/racon_1.4.20-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2083 (2.0K) Saving to: ‘racon_1.4.20-1.dsc’ 0K .. 100% 9.28M=0s 2022-01-10 04:50:41 (9.28 MB/s) - ‘racon_1.4.20-1.dsc’ saved [2083/2083] Mon Jan 10 04:50:41 UTC 2022 I: racon_1.4.20-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: racon Binary: racon Architecture: any Version: 1.4.20-1 Maintainer: Debian Med Packaging Team Uploaders: Cédric Lood , Andreas Tille Homepage: https://github.com/lbcb-sci/racon Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/racon Vcs-Git: https://salsa.debian.org/med-team/racon.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev (>= 3.0.12), libcereal-dev, libedlib-dev, libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler Package-List: racon deb science optional arch=any Checksums-Sha1: 85c544087652aa62fa1ee8e52fcf9fe9352d73b5 3083388 racon_1.4.20.orig.tar.gz 7f8899b51881dbb6f2e7e7fe24c4e57502f133f8 6268 racon_1.4.20-1.debian.tar.xz Checksums-Sha256: 50c22e66a1141c865b70917eecf34155b9ab3a4642765381c30f64557bdb2a9f 3083388 racon_1.4.20.orig.tar.gz ea85a7a999ef7a76ce036f0685f1f08303643335a6afb61c974aab009e4569c4 6268 racon_1.4.20-1.debian.tar.xz Files: e6300df6ac01cea7e6b175b48281c3f4 3083388 racon_1.4.20.orig.tar.gz 2cc7de1761aed4e11cb09431b27adaae 6268 racon_1.4.20-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmAGrsgACgkQPCZ2P2xn 5uIEbRAAqXCb8Numg38VrZG3rCk9sc3OQA1jUtCgLzFkdpaF5KKLxg1BRZSUntx8 X5a+uM6GOPBwotO32y75AdF0rQzkS/NbJxwN5xK5W8cezTTlAGjdwVlzcHwNDtuo yR2x8IgZJatcUiTomagKwZY/g+5uwFUyKNmPLFYqTnCl2hM4nu9bZklnHyoy2/FK DMUyALAIWcVfQ/VR7fp2DAMy5Pcro8XrzQvTlQKe5eM7SzydKETmgaj+gja5bkTd 1e3/X4WEhfzjjqT5DHKXOHvFimANpk1xUps3C/O7PIkZSmyw+zmeI4EIZPLWW7tk lsRHSixX63tH/SM2QW5JB+UKU0F52T8OkCrhr3/UpICI3T7y1cHGB50dRfD/aDh5 iP9CecAmCciX0rNRfuxhkzSQ8hTN7T3A7klBow9J94uJUd1RHIDj/WLkeIh/TU7c mTL3kcBQC/GmA7rxxyM6aAijHpS6S63npZgQJGTc0zu0odbbLL3vJPkHg0D9pyAl DbVQUI54KdrrOmKEn79HL2HOmuGLIgfUhjc6uE0WakR3nFF4WFrYF9mlCslBzVDR f/EVdfAKmZM2s/8TdeFVXxMWhX37vU+7dnop0attm+QA9zy1MDtFfhe32ysv17yl yLe0FmZZK0kW9xTIIQmFkx4ClDt1ZA4FNwdWsDOrXEi/cnuZ0ME= =vHWr -----END PGP SIGNATURE----- Mon Jan 10 04:50:41 UTC 2022 I: Checking whether the package is not for us Mon Jan 10 04:50:41 UTC 2022 I: Starting 1st build on remote node ionos5-amd64.debian.net. Mon Jan 10 04:50:41 UTC 2022 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Mon Jan 10 04:52:48 UTC 2022 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Feb 11 23:13:45 -12 2023 I: pbuilder-time-stamp: 1676200425 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [racon_1.4.20-1.dsc] I: copying [./racon_1.4.20.orig.tar.gz] I: copying [./racon_1.4.20-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.zUVYYOIB/trustedkeys.kbx': General error gpgv: Signature made Mon Jan 18 22:04:56 2021 -12 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./racon_1.4.20-1.dsc dpkg-source: info: extracting racon in racon-1.4.20 dpkg-source: info: unpacking racon_1.4.20.orig.tar.gz dpkg-source: info: unpacking racon_1.4.20-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying remove_buildpath dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2906700/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='027d6cbd9ea846129632366f45c15867' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2906700' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.CjyAK37vgj/pbuilderrc_59cj --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.CjyAK37vgj/b1 --logfile b1/build.log racon_1.4.20-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos5-amd64 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 4 2021 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jul 28 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 28 2021 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jul 28 2021 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 28 2021 more -rwsr-xr-x 1 root root 55528 Jul 28 2021 mount -rwxr-xr-x 1 root root 18664 Jul 28 2021 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Feb 9 03:46 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jul 28 2021 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 28 2021 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 28 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/2906700/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev (>= 3.0.12), libcereal-dev, libedlib-dev, libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev (>= 3.0.12); however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libedlib-dev; however: Package libedlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libspoa-dev; however: Package libspoa-dev is not installed. pbuilder-satisfydepends-dummy depends on libthread-pool-dev (>= 3.0.2); however: Package libthread-pool-dev is not installed. pbuilder-satisfydepends-dummy depends on rampler; however: Package rampler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbioparser-dev{a} libbrotli1{a} libcereal-dev{a} libcurl4{a} libdebhelper-perl{a} libedlib-dev{a} libedlib0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgtest-dev{a} libicu67{a} libjsoncpp24{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps8{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1{a} libsub-override-perl{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 29.9 MB of archives. After unpacking 116 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2 [102 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libprocps8 amd64 2:3.3.17-5 [63.9 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 procps amd64 2:3.3.17-5 [502 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 cmake-data all 3.18.4-2+deb11u1 [1725 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libarchive13 amd64 3.4.3-2+b1 [343 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1 [69.1 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1 [106 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3 [232 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 libcurl4 amd64 7.74.0-1.3+deb11u1 [341 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libjsoncpp24 amd64 1.9.4-4 [78.9 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 librhash0 amd64 1.4.1-2 [129 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libuv1 amd64 1.40.0-2 [132 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 cmake amd64 3.18.4-2+deb11u1 [5593 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 googletest all 1.10.0.20201025-1.1 [629 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libbioparser-dev all 3.0.12-1 [7168 B] Get: 54 http://deb.debian.org/debian bullseye/main amd64 rapidjson-dev all 1.1.0+dfsg2-7 [98.9 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 libcereal-dev all 1.3.0+dfsg-1 [210 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 libedlib0 amd64 1.2.6-1 [15.7 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 libedlib-dev amd64 1.2.6-1 [17.9 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 libgtest-dev amd64 1.10.0.20201025-1.1 [226 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 libspoa7.0.0 amd64 4.0.7+ds-1+b1 [66.8 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 libspoa-dev amd64 4.0.7+ds-1+b1 [7012 B] Get: 61 http://deb.debian.org/debian bullseye/main amd64 libthread-pool-dev all 3.0.2-1 [4376 B] Get: 62 http://deb.debian.org/debian bullseye/main amd64 rampler amd64 2.0.0-1 [21.7 kB] Fetched 29.9 MB in 0s (92.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_amd64.deb ... 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Selecting previously unselected package libmagic-mgc. Preparing to unpack .../09-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../10-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../11-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../12-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../13-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../14-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../15-autoconf_2.69-14_all.deb ... 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Selecting previously unselected package libarchive13:amd64. Preparing to unpack .../22-libarchive13_3.4.3-2+b1_amd64.deb ... Unpacking libarchive13:amd64 (3.4.3-2+b1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../23-libbrotli1_1.0.9-2+b2_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../24-libsasl2-modules-db_2.1.27+dfsg-2.1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../25-libsasl2-2_2.1.27+dfsg-2.1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../26-libldap-2.4-2_2.4.57+dfsg-3_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.57+dfsg-3) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../27-libnghttp2-14_1.43.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.43.0-1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../28-libpsl5_0.21.0-1.2_amd64.deb ... Unpacking libpsl5:amd64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../29-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../30-libssh2-1_1.9.0-2_amd64.deb ... Unpacking libssh2-1:amd64 (1.9.0-2) ... Selecting previously unselected package libcurl4:amd64. Preparing to unpack .../31-libcurl4_7.74.0-1.3+deb11u1_amd64.deb ... Unpacking libcurl4:amd64 (7.74.0-1.3+deb11u1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../32-libexpat1_2.2.10-2_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-2) ... Selecting previously unselected package libjsoncpp24:amd64. Preparing to unpack .../33-libjsoncpp24_1.9.4-4_amd64.deb ... Unpacking libjsoncpp24:amd64 (1.9.4-4) ... Selecting previously unselected package librhash0:amd64. Preparing to unpack .../34-librhash0_1.4.1-2_amd64.deb ... Unpacking librhash0:amd64 (1.4.1-2) ... Selecting previously unselected package libuv1:amd64. Preparing to unpack .../35-libuv1_1.40.0-2_amd64.deb ... Unpacking libuv1:amd64 (1.40.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../36-cmake_3.18.4-2+deb11u1_amd64.deb ... Unpacking cmake (3.18.4-2+deb11u1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../37-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../38-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. 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Selecting previously unselected package dwz. Preparing to unpack .../45-dwz_0.13+20210201-1_amd64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package gettext. Preparing to unpack .../46-gettext_0.21-4_amd64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../47-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../48-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../49-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package googletest. Preparing to unpack .../50-googletest_1.10.0.20201025-1.1_all.deb ... Unpacking googletest (1.10.0.20201025-1.1) ... Selecting previously unselected package zlib1g-dev:amd64. 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Preparing to unpack .../57-libgtest-dev_1.10.0.20201025-1.1_amd64.deb ... Unpacking libgtest-dev:amd64 (1.10.0.20201025-1.1) ... Selecting previously unselected package libspoa7.0.0:amd64. Preparing to unpack .../58-libspoa7.0.0_4.0.7+ds-1+b1_amd64.deb ... Unpacking libspoa7.0.0:amd64 (4.0.7+ds-1+b1) ... Selecting previously unselected package libspoa-dev:amd64. Preparing to unpack .../59-libspoa-dev_4.0.7+ds-1+b1_amd64.deb ... Unpacking libspoa-dev:amd64 (4.0.7+ds-1+b1) ... Selecting previously unselected package libthread-pool-dev. Preparing to unpack .../60-libthread-pool-dev_3.0.2-1_all.deb ... Unpacking libthread-pool-dev (3.0.2-1) ... Selecting previously unselected package rampler. Preparing to unpack .../61-rampler_2.0.0-1_amd64.deb ... Unpacking rampler (2.0.0-1) ... Setting up libexpat1:amd64 (2.2.10-2) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libnghttp2-14:amd64 (1.43.0-1) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up googletest (1.10.0.20201025-1.1) ... Setting up rapidjson-dev (1.1.0+dfsg2-7) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libuv1:amd64 (1.40.0-2) ... Setting up rampler (2.0.0-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:amd64 (6.2+20201114-2) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up libthread-pool-dev (3.0.2-1) ... Setting up libspoa7.0.0:amd64 (4.0.7+ds-1+b1) ... Setting up autopoint (0.21-4) ... Setting up libedlib0 (1.2.6-1) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1) ... Setting up libjsoncpp24:amd64 (1.9.4-4) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up libbioparser-dev (3.0.12-1) ... Setting up librhash0:amd64 (1.4.1-2) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:amd64 (1.9.0-2) ... Setting up cmake-data (3.18.4-2+deb11u1) ... Setting up libelf1:amd64 (0.183-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7) ... Setting up libprocps8:amd64 (2:3.3.17-5) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libgtest-dev:amd64 (1.10.0.20201025-1.1) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:amd64 (3.4.3-2+b1) ... Setting up libcereal-dev (1.3.0+dfsg-1) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libedlib-dev (1.2.6-1) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up procps (2:3.3.17-5) ... Setting up libcurl4:amd64 (7.74.0-1.3+deb11u1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libspoa-dev:amd64 (4.0.7+ds-1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up cmake (3.18.4-2+deb11u1) ... Setting up debhelper (13.3.4) ... Processing triggers for libc-bin (2.31-13+deb11u2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/racon-1.4.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../racon_1.4.20-1_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.4.20-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/racon-1.4.20' dh_auto_configure -- -Dracon_build_tests=ON -Dracon_build_wrapper=ON cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -Dracon_build_tests=ON -Dracon_build_wrapper=ON .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found GTest: /usr/lib/x86_64-linux-gnu/libgtest.a -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/racon-1.4.20/obj-x86_64-linux-gnu # Somehow the means in the patch for CMakeLists.txt to replace -lpthread by -pthread to not work # Just hack it here sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/racon-1.4.20' dh_auto_build -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/racon-1.4.20/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/racon-1.4.20 -B/build/racon-1.4.20/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/racon-1.4.20/obj-x86_64-linux-gnu/CMakeFiles /build/racon-1.4.20/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/racon-1.4.20/obj-x86_64-linux-gnu' make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/depend make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/depend make[3]: Entering directory '/build/racon-1.4.20/obj-x86_64-linux-gnu' cd /build/racon-1.4.20/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/racon-1.4.20 /build/racon-1.4.20 /build/racon-1.4.20/obj-x86_64-linux-gnu /build/racon-1.4.20/obj-x86_64-linux-gnu /build/racon-1.4.20/obj-x86_64-linux-gnu/CMakeFiles/racon_test.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/racon-1.4.20/obj-x86_64-linux-gnu' cd /build/racon-1.4.20/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/racon-1.4.20 /build/racon-1.4.20 /build/racon-1.4.20/obj-x86_64-linux-gnu /build/racon-1.4.20/obj-x86_64-linux-gnu /build/racon-1.4.20/obj-x86_64-linux-gnu/CMakeFiles/racon.dir/DependInfo.cmake --color= Dependee "/build/racon-1.4.20/obj-x86_64-linux-gnu/CMakeFiles/racon_test.dir/DependInfo.cmake" is newer than depender "/build/racon-1.4.20/obj-x86_64-linux-gnu/CMakeFiles/racon_test.dir/depend.internal". 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CMakeFiles/racon.dir/src/window.cpp.o -o bin/racon -lspoa -ledlib -lz make[3]: Leaving directory '/build/racon-1.4.20/obj-x86_64-linux-gnu' [100%] Built target racon_test make[3]: Leaving directory '/build/racon-1.4.20/obj-x86_64-linux-gnu' [100%] Built target racon make[2]: Leaving directory '/build/racon-1.4.20/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/racon-1.4.20/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/racon-1.4.20/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/racon-1.4.20' cd test && ../obj-*/bin/racon_test Running main() from /build/googletest-YnT0O3/googletest-1.10.0.20201025/googletest/src/gtest_main.cc [==========] Running 15 tests from 2 test suites. [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError [ OK ] RaconInitializeTest.PolisherTypeError (1 ms) [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (1 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (1 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (4 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError [ OK ] RaconInitializeTest.TargetPathExtensionError (4 ms) [----------] 5 tests from RaconInitializeTest (11 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities [racon::Polisher::initialize] loaded target sequences 0.000678 s [racon::Polisher::initialize] loaded sequences 0.043783 s [racon::Polisher::initialize] loaded overlaps 0.000589 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.027542 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.043536 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.055541 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.070061 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.083898 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.092455 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.111703 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.132095 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.144906 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.162386 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.175481 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.192916 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.216064 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.227145 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.246696 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.267113 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.282971 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.299604 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.318396 s [racon::Polisher::initialize] aligning overlaps [====================] 0.343176 s [racon::Polisher::initialize] transformed data into windows 0.002457 s [racon::Polisher::polish] generating consensus [=> ] 0.033063 s [racon::Polisher::polish] generating consensus [==> ] 0.062975 s [racon::Polisher::polish] generating consensus [===> ] 0.087752 s [racon::Polisher::polish] generating consensus [====> ] 0.104717 s [racon::Polisher::polish] generating consensus [=====> ] 0.115889 s [racon::Polisher::polish] generating consensus [======> ] 0.124011 s [racon::Polisher::polish] generating consensus [=======> ] 0.138366 s [racon::Polisher::polish] generating consensus [========> ] 0.157218 s [racon::Polisher::polish] generating consensus [=========> ] 0.177325 s [racon::Polisher::polish] generating consensus [==========> ] 0.204017 s [racon::Polisher::polish] generating consensus [===========> ] 0.241810 s [racon::Polisher::polish] generating consensus [============> ] 0.273516 s [racon::Polisher::polish] generating consensus [=============> ] 0.336515 s [racon::Polisher::polish] generating consensus [==============> ] 0.388140 s [racon::Polisher::polish] generating consensus [===============> ] 0.412671 s [racon::Polisher::polish] generating consensus [================> ] 0.447537 s [racon::Polisher::polish] generating consensus [=================> ] 0.481251 s [racon::Polisher::polish] generating consensus [==================> ] 0.499204 s [racon::Polisher::polish] generating consensus [===================>] 0.528828 s [racon::Polisher::polish] generating consensus [====================] 0.657846 s [racon::Polisher::] total = 1.065269 s [ OK ] RaconPolishingTest.ConsensusWithQualities (1072 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities [racon::Polisher::initialize] loaded target sequences 0.000568 s [racon::Polisher::initialize] loaded sequences 0.018326 s [racon::Polisher::initialize] loaded overlaps 0.000324 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.022901 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.039162 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.049852 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.066082 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.080426 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.089351 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.108379 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.128566 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.139483 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.158081 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.174282 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.188047 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.213348 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.222730 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.241066 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.260364 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.277436 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.293030 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.311497 s [racon::Polisher::initialize] aligning overlaps [====================] 0.335740 s [racon::Polisher::initialize] transformed data into windows 0.000427 s [racon::Polisher::polish] generating consensus [=> ] 0.039377 s [racon::Polisher::polish] generating consensus [==> ] 0.078958 s [racon::Polisher::polish] generating consensus [===> ] 0.105882 s [racon::Polisher::polish] generating consensus [====> ] 0.131565 s [racon::Polisher::polish] generating consensus [=====> ] 0.139769 s [racon::Polisher::polish] generating consensus [======> ] 0.154729 s [racon::Polisher::polish] generating consensus [=======> ] 0.173444 s [racon::Polisher::polish] generating consensus [========> ] 0.199306 s [racon::Polisher::polish] generating consensus [=========> ] 0.228276 s [racon::Polisher::polish] generating consensus [==========> ] 0.271220 s [racon::Polisher::polish] generating consensus [===========> ] 0.307703 s [racon::Polisher::polish] generating consensus [============> ] 0.357609 s [racon::Polisher::polish] generating consensus [=============> ] 0.438806 s [racon::Polisher::polish] generating consensus [==============> ] 0.496144 s [racon::Polisher::polish] generating consensus [===============> ] 0.557316 s [racon::Polisher::polish] generating consensus [================> ] 0.591680 s [racon::Polisher::polish] generating consensus [=================> ] 0.627463 s [racon::Polisher::polish] generating consensus [==================> ] 0.655464 s [racon::Polisher::polish] generating consensus [===================>] 0.694407 s [racon::Polisher::polish] generating consensus [====================] 0.894308 s [racon::Polisher::] total = 1.264681 s [ OK ] RaconPolishingTest.ConsensusWithoutQualities (1271 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments [racon::Polisher::initialize] loaded target sequences 0.000572 s [racon::Polisher::initialize] loaded sequences 0.041719 s [racon::Polisher::initialize] loaded overlaps 0.026788 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.003257 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.003415 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.003567 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.003764 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.003856 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.004011 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.004190 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.004355 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.004474 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.004613 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.004781 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.004996 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.005221 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.005329 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.005500 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.005786 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.005887 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.006055 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.006239 s [racon::Polisher::initialize] aligning overlaps [====================] 0.006468 s [racon::Polisher::initialize] transformed data into windows 0.002303 s [racon::Polisher::polish] generating consensus [=> ] 0.033429 s [racon::Polisher::polish] generating consensus [==> ] 0.063027 s [racon::Polisher::polish] generating consensus [===> ] 0.089503 s [racon::Polisher::polish] generating consensus [====> ] 0.105590 s [racon::Polisher::polish] generating consensus [=====> ] 0.116176 s [racon::Polisher::polish] generating consensus [======> ] 0.124676 s [racon::Polisher::polish] generating consensus [=======> ] 0.135913 s [racon::Polisher::polish] generating consensus [========> ] 0.154968 s [racon::Polisher::polish] generating consensus [=========> ] 0.172363 s [racon::Polisher::polish] generating consensus [==========> ] 0.199391 s [racon::Polisher::polish] generating consensus [===========> ] 0.235506 s [racon::Polisher::polish] generating consensus [============> ] 0.268831 s [racon::Polisher::polish] generating consensus [=============> ] 0.327307 s [racon::Polisher::polish] generating consensus [==============> ] 0.367586 s [racon::Polisher::polish] generating consensus [===============> ] 0.406169 s [racon::Polisher::polish] generating consensus [================> ] 0.430992 s [racon::Polisher::polish] generating consensus [=================> ] 0.466764 s [racon::Polisher::polish] generating consensus [==================> ] 0.488276 s [racon::Polisher::polish] generating consensus [===================>] 0.513409 s [racon::Polisher::polish] generating consensus [====================] 0.633012 s [racon::Polisher::] total = 0.726630 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (731 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments [racon::Polisher::initialize] loaded target sequences 0.000566 s [racon::Polisher::initialize] loaded sequences 0.018235 s [racon::Polisher::initialize] loaded overlaps 0.026782 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.002644 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.002821 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.002949 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.003146 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.003216 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.003381 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.003581 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.003733 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.003853 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.004038 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.004172 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.004388 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.004592 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.004752 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.004885 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.005136 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.005235 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.005398 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.005589 s [racon::Polisher::initialize] aligning overlaps [====================] 0.005810 s [racon::Polisher::initialize] transformed data into windows 0.000474 s [racon::Polisher::polish] generating consensus [=> ] 0.034281 s [racon::Polisher::polish] generating consensus [==> ] 0.069525 s [racon::Polisher::polish] generating consensus [===> ] 0.098168 s [racon::Polisher::polish] generating consensus [====> ] 0.121117 s [racon::Polisher::polish] generating consensus [=====> ] 0.131572 s [racon::Polisher::polish] generating consensus [======> ] 0.146125 s [racon::Polisher::polish] generating consensus [=======> ] 0.161735 s [racon::Polisher::polish] generating consensus [========> ] 0.184336 s [racon::Polisher::polish] generating consensus [=========> ] 0.204772 s [racon::Polisher::polish] generating consensus [==========> ] 0.239469 s [racon::Polisher::polish] generating consensus [===========> ] 0.274916 s [racon::Polisher::polish] generating consensus [============> ] 0.325099 s [racon::Polisher::polish] generating consensus [=============> ] 0.405644 s [racon::Polisher::polish] generating consensus [==============> ] 0.465814 s [racon::Polisher::polish] generating consensus [===============> ] 0.519479 s [racon::Polisher::polish] generating consensus [================> ] 0.564074 s [racon::Polisher::polish] generating consensus [=================> ] 0.602491 s [racon::Polisher::polish] generating consensus [==================> ] 0.624994 s [racon::Polisher::polish] generating consensus [===================>] 0.657424 s [racon::Polisher::polish] generating consensus [====================] 0.827988 s [racon::Polisher::] total = 0.890131 s [ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (893 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow [racon::Polisher::initialize] loaded target sequences 0.000579 s [racon::Polisher::initialize] loaded sequences 0.041748 s [racon::Polisher::initialize] loaded overlaps 0.000466 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.022065 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.038532 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.049833 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.066952 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.081300 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.089510 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.108835 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.126832 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.140956 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.158491 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.173474 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.188863 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.211607 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.223287 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.241658 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.261516 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.277526 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.292969 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.309986 s [racon::Polisher::initialize] aligning overlaps [====================] 0.336875 s [racon::Polisher::initialize] transformed data into windows 0.002224 s [racon::Polisher::polish] generating consensus [=> ] 0.111119 s [racon::Polisher::polish] generating consensus [==> ] 0.122676 s [racon::Polisher::polish] generating consensus [===> ] 0.211410 s [racon::Polisher::polish] generating consensus [====> ] 0.211462 s [racon::Polisher::polish] generating consensus [=====> ] 0.257673 s [racon::Polisher::polish] generating consensus [======> ] 0.257927 s [racon::Polisher::polish] generating consensus [=======> ] 0.304689 s [racon::Polisher::polish] generating consensus [========> ] 0.322504 s [racon::Polisher::polish] generating consensus [=========> ] 0.371140 s [racon::Polisher::polish] generating consensus [==========> ] 0.435469 s [racon::Polisher::polish] generating consensus [===========> ] 0.493662 s [racon::Polisher::polish] generating consensus [============> ] 0.603432 s [racon::Polisher::polish] generating consensus [=============> ] 0.725931 s [racon::Polisher::polish] generating consensus [==============> ] 0.843986 s [racon::Polisher::polish] generating consensus [===============> ] 0.862924 s [racon::Polisher::polish] generating consensus [================> ] 0.972777 s [racon::Polisher::polish] generating consensus [=================> ] 1.010499 s [racon::Polisher::polish] generating consensus [==================> ] 1.073963 s [racon::Polisher::polish] generating consensus [===================>] 1.133783 s [racon::Polisher::polish] generating consensus [====================] 1.377125 s [racon::Polisher::] total = 1.774343 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (1778 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance [racon::Polisher::initialize] loaded target sequences 0.000577 s [racon::Polisher::initialize] loaded sequences 0.041968 s [racon::Polisher::initialize] loaded overlaps 0.000437 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.022291 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.038752 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.050171 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.067253 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.081602 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.089717 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.109121 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.127131 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.141023 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.158631 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.173760 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.188863 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.211951 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.223595 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.241974 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.261633 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.274377 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.291102 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.312993 s [racon::Polisher::initialize] aligning overlaps [====================] 0.336308 s [racon::Polisher::initialize] transformed data into windows 0.002398 s [racon::Polisher::polish] generating consensus [=> ] 0.030491 s [racon::Polisher::polish] generating consensus [==> ] 0.059264 s [racon::Polisher::polish] generating consensus [===> ] 0.083614 s [racon::Polisher::polish] generating consensus [====> ] 0.099242 s [racon::Polisher::polish] generating consensus [=====> ] 0.110329 s [racon::Polisher::polish] generating consensus [======> ] 0.119625 s [racon::Polisher::polish] generating consensus [=======> ] 0.130312 s [racon::Polisher::polish] generating consensus [========> ] 0.148399 s [racon::Polisher::polish] generating consensus [=========> ] 0.169468 s [racon::Polisher::polish] generating consensus [==========> ] 0.195753 s [racon::Polisher::polish] generating consensus [===========> ] 0.231745 s [racon::Polisher::polish] generating consensus [============> ] 0.261260 s [racon::Polisher::polish] generating consensus [=============> ] 0.314533 s [racon::Polisher::polish] generating consensus [==============> ] 0.370945 s [racon::Polisher::polish] generating consensus [===============> ] 0.391072 s [racon::Polisher::polish] generating consensus [================> ] 0.424472 s [racon::Polisher::polish] generating consensus [=================> ] 0.456722 s [racon::Polisher::polish] generating consensus [==================> ] 0.483404 s [racon::Polisher::polish] generating consensus [===================>] 0.507405 s [racon::Polisher::polish] generating consensus [====================] 0.627477 s [racon::Polisher::] total = 1.022994 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (1026 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities [racon::Polisher::initialize] loaded target sequences 0.041698 s [racon::Polisher::initialize] loaded sequences 0.041399 s [racon::Polisher::initialize] loaded overlaps 0.010585 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.026892 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.038892 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.062885 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.070883 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.090891 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.094891 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.110891 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.122890 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.138899 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.158891 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.170889 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.190899 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.214890 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.234890 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.258897 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.274892 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.294898 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.318893 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.334893 s [racon::Polisher::initialize] aligning overlaps [====================] 0.384242 s [racon::Polisher::initialize] transformed data into windows 0.004299 s [racon::Polisher::polish] generating consensus [=> ] 0.027241 s [racon::Polisher::polish] generating consensus [==> ] 0.052788 s [racon::Polisher::polish] generating consensus [===> ] 0.077838 s [racon::Polisher::polish] generating consensus [====> ] 0.078075 s [racon::Polisher::polish] generating consensus [=====> ] 0.097341 s [racon::Polisher::polish] generating consensus [======> ] 0.108990 s [racon::Polisher::polish] generating consensus [=======> ] 0.127761 s [racon::Polisher::polish] generating consensus [========> ] 0.128556 s [racon::Polisher::polish] generating consensus [=========> ] 0.162881 s [racon::Polisher::polish] generating consensus [==========> ] 0.177668 s [racon::Polisher::polish] generating consensus [===========> ] 0.190911 s [racon::Polisher::polish] generating consensus [============> ] 0.198297 s [racon::Polisher::polish] generating consensus [=============> ] 0.213705 s [racon::Polisher::polish] generating consensus [==============> ] 0.214168 s [racon::Polisher::polish] generating consensus [===============> ] 0.251861 s [racon::Polisher::polish] generating consensus [================> ] 0.252221 s [racon::Polisher::polish] generating consensus [=================> ] 0.314128 s [racon::Polisher::polish] generating consensus [==================> ] 0.339672 s [racon::Polisher::polish] generating consensus [===================>] 0.366820 s [racon::Polisher::polish] generating consensus [====================] 0.379752 s [racon::Polisher::] total = 0.862397 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (864 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.041700 s [racon::Polisher::initialize] loaded sequences 0.041590 s [racon::Polisher::initialize] loaded overlaps 0.010271 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.405143 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.685782 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.938951 s [racon::Polisher::initialize] aligning overlaps [====> ] 1.294689 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.574423 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.814109 s [racon::Polisher::initialize] aligning overlaps [=======> ] 2.123120 s [racon::Polisher::initialize] aligning overlaps [========> ] 2.509940 s [racon::Polisher::initialize] aligning overlaps [=========> ] 2.904989 s [racon::Polisher::initialize] aligning overlaps [==========> ] 3.253504 s [racon::Polisher::initialize] aligning overlaps [===========> ] 3.540881 s [racon::Polisher::initialize] aligning overlaps [============> ] 3.945812 s [racon::Polisher::initialize] aligning overlaps [=============> ] 4.367875 s [racon::Polisher::initialize] aligning overlaps [==============> ] 4.728919 s [racon::Polisher::initialize] aligning overlaps [===============> ] 5.162982 s [racon::Polisher::initialize] aligning overlaps [================> ] 5.584866 s [racon::Polisher::initialize] aligning overlaps [=================> ] 5.967626 s [racon::Polisher::initialize] aligning overlaps [==================> ] 6.383726 s [racon::Polisher::initialize] aligning overlaps [===================>] 6.814219 s [racon::Polisher::initialize] aligning overlaps [====================] 7.218140 s [racon::Polisher::initialize] transformed data into windows 0.065900 s [racon::Polisher::polish] generating consensus [=> ] 1.079135 s [racon::Polisher::polish] generating consensus [==> ] 1.840957 s [racon::Polisher::polish] generating consensus [===> ] 2.712081 s [racon::Polisher::polish] generating consensus [====> ] 3.411674 s [racon::Polisher::polish] generating consensus [=====> ] 4.244939 s [racon::Polisher::polish] generating consensus [======> ] 5.187019 s [racon::Polisher::polish] generating consensus [=======> ] 6.088351 s [racon::Polisher::polish] generating consensus [========> ] 6.773678 s [racon::Polisher::polish] generating consensus [=========> ] 7.607746 s [racon::Polisher::polish] generating consensus [==========> ] 8.640755 s [racon::Polisher::polish] generating consensus [===========> ] 9.513542 s [racon::Polisher::polish] generating consensus [============> ] 10.481216 s [racon::Polisher::polish] generating consensus [=============> ] 11.302180 s [racon::Polisher::polish] generating consensus [==============> ] 12.229178 s [racon::Polisher::polish] generating consensus [===============> ] 13.173564 s [racon::Polisher::polish] generating consensus [================> ] 13.711554 s [racon::Polisher::polish] generating consensus [=================> ] 14.754186 s [racon::Polisher::polish] generating consensus [==================> ] 15.719683 s [racon::Polisher::polish] generating consensus [===================>] 16.677677 s [racon::Polisher::polish] generating consensus [====================] 17.565257 s [racon::Polisher::] total = 24.946059 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (24949 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.018438 s [racon::Polisher::initialize] loaded sequences 0.018148 s [racon::Polisher::initialize] loaded overlaps 0.010303 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.402868 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.684644 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.938460 s [racon::Polisher::initialize] aligning overlaps [====> ] 1.312100 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.606624 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.859668 s [racon::Polisher::initialize] aligning overlaps [=======> ] 2.181120 s [racon::Polisher::initialize] aligning overlaps [========> ] 2.581249 s [racon::Polisher::initialize] aligning overlaps [=========> ] 2.987701 s [racon::Polisher::initialize] aligning overlaps [==========> ] 3.346989 s [racon::Polisher::initialize] aligning overlaps [===========> ] 3.642452 s [racon::Polisher::initialize] aligning overlaps [============> ] 4.059586 s [racon::Polisher::initialize] aligning overlaps [=============> ] 4.501009 s [racon::Polisher::initialize] aligning overlaps [==============> ] 4.877768 s [racon::Polisher::initialize] aligning overlaps [===============> ] 5.328485 s [racon::Polisher::initialize] aligning overlaps [================> ] 5.765689 s [racon::Polisher::initialize] aligning overlaps [=================> ] 6.171907 s [racon::Polisher::initialize] aligning overlaps [==================> ] 6.600946 s [racon::Polisher::initialize] aligning overlaps [===================>] 7.045914 s [racon::Polisher::initialize] aligning overlaps [====================] 7.464474 s [racon::Polisher::initialize] transformed data into windows 0.012282 s [racon::Polisher::polish] generating consensus [=> ] 1.512777 s [racon::Polisher::polish] generating consensus [==> ] 2.619571 s [racon::Polisher::polish] generating consensus [===> ] 3.831874 s [racon::Polisher::polish] generating consensus [====> ] 4.754936 s [racon::Polisher::polish] generating consensus [=====> ] 5.897919 s [racon::Polisher::polish] generating consensus [======> ] 7.159197 s [racon::Polisher::polish] generating consensus [=======> ] 8.442328 s [racon::Polisher::polish] generating consensus [========> ] 9.394767 s [racon::Polisher::polish] generating consensus [=========> ] 10.533503 s [racon::Polisher::polish] generating consensus [==========> ] 11.928795 s [racon::Polisher::polish] generating consensus [===========> ] 13.118722 s [racon::Polisher::polish] generating consensus [============> ] 14.427055 s [racon::Polisher::polish] generating consensus [=============> ] 15.609322 s [racon::Polisher::polish] generating consensus [==============> ] 16.871113 s [racon::Polisher::polish] generating consensus [===============> ] 17.967101 s [racon::Polisher::polish] generating consensus [================> ] 18.569615 s [racon::Polisher::polish] generating consensus [=================> ] 19.933685 s [racon::Polisher::polish] generating consensus [==================> ] 21.187173 s [racon::Polisher::polish] generating consensus [===================>] 22.326510 s [racon::Polisher::polish] generating consensus [====================] 23.382558 s [racon::Polisher::] total = 30.909053 s [ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (30911 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap [racon::Polisher::initialize] loaded target sequences 0.042004 s [racon::Polisher::initialize] loaded sequences 0.041754 s [racon::Polisher::initialize] loaded overlaps 0.009773 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.403774 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.684100 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.936990 s [racon::Polisher::initialize] aligning overlaps [====> ] 1.293804 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.571702 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.809181 s [racon::Polisher::initialize] aligning overlaps [=======> ] 2.115630 s [racon::Polisher::initialize] aligning overlaps [========> ] 2.503886 s [racon::Polisher::initialize] aligning overlaps [=========> ] 2.898477 s [racon::Polisher::initialize] aligning overlaps [==========> ] 3.245149 s [racon::Polisher::initialize] aligning overlaps [===========> ] 3.530758 s [racon::Polisher::initialize] aligning overlaps [============> ] 3.936003 s [racon::Polisher::initialize] aligning overlaps [=============> ] 4.356356 s [racon::Polisher::initialize] aligning overlaps [==============> ] 4.718189 s [racon::Polisher::initialize] aligning overlaps [===============> ] 5.151042 s [racon::Polisher::initialize] aligning overlaps [================> ] 5.569193 s [racon::Polisher::initialize] aligning overlaps [=================> ] 5.954935 s [racon::Polisher::initialize] aligning overlaps [==================> ] 6.369825 s [racon::Polisher::initialize] aligning overlaps [===================>] 6.801301 s [racon::Polisher::initialize] aligning overlaps [====================] 7.202858 s [racon::Polisher::initialize] transformed data into windows 0.063432 s [racon::Polisher::polish] generating consensus [=> ] 1.057911 s [racon::Polisher::polish] generating consensus [==> ] 1.803365 s [racon::Polisher::polish] generating consensus [===> ] 2.669380 s [racon::Polisher::polish] generating consensus [====> ] 3.339512 s [racon::Polisher::polish] generating consensus [=====> ] 4.151386 s [racon::Polisher::polish] generating consensus [======> ] 5.077707 s [racon::Polisher::polish] generating consensus [=======> ] 5.968164 s [racon::Polisher::polish] generating consensus [========> ] 6.647180 s [racon::Polisher::polish] generating consensus [=========> ] 7.469283 s [racon::Polisher::polish] generating consensus [==========> ] 8.476642 s [racon::Polisher::polish] generating consensus [===========> ] 9.329744 s [racon::Polisher::polish] generating consensus [============> ] 10.296249 s [racon::Polisher::polish] generating consensus [=============> ] 11.100708 s [racon::Polisher::polish] generating consensus [==============> ] 12.017321 s [racon::Polisher::polish] generating consensus [===============> ] 12.958320 s [racon::Polisher::polish] generating consensus [================> ] 13.480479 s [racon::Polisher::polish] generating consensus [=================> ] 14.499980 s [racon::Polisher::polish] generating consensus [==================> ] 15.470156 s [racon::Polisher::polish] generating consensus [===================>] 16.394110 s [racon::Polisher::polish] generating consensus [====================] 17.218714 s [racon::Polisher::] total = 24.581632 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (24585 ms) [----------] 10 tests from RaconPolishingTest (88080 ms total) [----------] Global test environment tear-down [==========] 15 tests from 2 test suites ran. (88091 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/racon-1.4.20' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/racon-1.4.20/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/racon-1.4.20/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/racon-1.4.20 -B/build/racon-1.4.20/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/racon-1.4.20/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/racon-1.4.20/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/racon-1.4.20/debian/racon/usr/bin/racon make[1]: Leaving directory '/build/racon-1.4.20/obj-x86_64-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'racon' in '../racon_1.4.20-1_amd64.deb'. dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.4.20-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../racon_1.4.20-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2906700 and its subdirectories I: Current time: Sat Feb 11 23:15:50 -12 2023 I: pbuilder-time-stamp: 1676200550 Mon Jan 10 04:52:48 UTC 2022 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Mon Jan 10 04:52:48 UTC 2022 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Mon Jan 10 04:59:38 UTC 2022 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Mon Jan 10 04:59:38 UTC 2022 I: racon_1.4.20-1_amd64.changes: Format: 1.8 Date: Tue, 19 Jan 2021 08:11:15 +0100 Source: racon Binary: racon racon-dbgsym Architecture: amd64 Version: 1.4.20-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: racon - consensus module for raw de novo DNA assembly of long uncorrected Changes: racon (1.4.20-1) unstable; urgency=medium . * Team upload. . [ Andreas Tille ] * Add lintian-override * Standards-Version: 4.5.1 (routine-update) . [ Michael R. Crusoe ] * Update patches. * Build the wrapper script. * Bump libthread-pool-dev build-dep to be at least 3 * libthread-pool-dev is now header-only, update use_debian_packaged_libs.patch to reflect that. Checksums-Sha1: c40b0ef55d43279f67eb167c16046354cff87d5c 2142352 racon-dbgsym_1.4.20-1_amd64.deb 8ce8d728d44c0ba69c1f8f2522c63b638624efe6 6169 racon_1.4.20-1_amd64.buildinfo 2bf45329486fe4a7e35d1606d3872e26a1141ead 3272088 racon_1.4.20-1_amd64.deb Checksums-Sha256: 362d2d605ee563a6fdc48eba7058cbda9fa50bf6f2abd594b3c99fcc9872ec58 2142352 racon-dbgsym_1.4.20-1_amd64.deb 7d64216694992383a995d6ac31a434943360a32dc7386364f7909f26ae62277a 6169 racon_1.4.20-1_amd64.buildinfo 87315970d117f7eeb2de96e5fa4876d1d0faa3d1756e10077d7fe204c0d328d9 3272088 racon_1.4.20-1_amd64.deb Files: d96783c6cc24ff11a6db5d6a4b2b44ec 2142352 debug optional racon-dbgsym_1.4.20-1_amd64.deb 6da2bd6002d2701bd2ba1662cc320d86 6169 science optional racon_1.4.20-1_amd64.buildinfo 92e2632b5c2a03e5a9b69973738018e0 3272088 science optional racon_1.4.20-1_amd64.deb Mon Jan 10 04:59:39 UTC 2022 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.CjyAK37vgj/racon_1.4.20-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.CjyAK37vgj/racon_1.4.20-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.CjyAK37vgj/racon_1.4.20-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.CjyAK37vgj/b1/racon_1.4.20-1_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.CjyAK37vgj/b2/racon_1.4.20-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.305s) 0.305s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.075s) 0.075s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Mon Jan 10 04:59:40 UTC 2022 I: found no differences in the changes files, and a .buildinfo file also exists. Mon Jan 10 04:59:40 UTC 2022 I: racon from bullseye built successfully and reproducibly on amd64. Mon Jan 10 04:59:42 UTC 2022 I: Submitting .buildinfo files to external archives: Mon Jan 10 04:59:42 UTC 2022 I: Submitting 8.0K b1/racon_1.4.20-1_amd64.buildinfo.asc Mon Jan 10 04:59:44 UTC 2022 I: Submitting 8.0K b2/racon_1.4.20-1_amd64.buildinfo.asc Mon Jan 10 04:59:44 UTC 2022 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Jan 10 04:59:44 UTC 2022 I: Done submitting .buildinfo files. Mon Jan 10 04:59:44 UTC 2022 I: Removing signed racon_1.4.20-1_amd64.buildinfo.asc files: removed './b1/racon_1.4.20-1_amd64.buildinfo.asc' removed './b2/racon_1.4.20-1_amd64.buildinfo.asc'