Thu Feb 10 13:16:14 UTC 2022 I: starting to build python-dendropy/bullseye/amd64 on jenkins on '2022-02-10 13:16' Thu Feb 10 13:16:14 UTC 2022 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_21/45256/console.log Thu Feb 10 13:16:14 UTC 2022 I: Downloading source for bullseye/python-dendropy=4.5.1-1 --2022-02-10 13:16:14-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-dendropy/python-dendropy_4.5.1-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2148 (2.1K) Saving to: ‘python-dendropy_4.5.1-1.dsc’ 0K .. 100% 165M=0s 2022-02-10 13:16:14 (165 MB/s) - ‘python-dendropy_4.5.1-1.dsc’ saved [2148/2148] Thu Feb 10 13:16:14 UTC 2022 I: python-dendropy_4.5.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-dendropy Binary: python3-dendropy, sumtrees Architecture: all Version: 4.5.1-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://dendropy.org/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/python-dendropy Vcs-Git: https://salsa.debian.org/med-team/python-dendropy.git Testsuite: autopkgtest, autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools Package-List: python3-dendropy deb python optional arch=all sumtrees deb python optional arch=all Checksums-Sha1: 1d73d59dc7902073d9057718c62e101d6c637252 7713452 python-dendropy_4.5.1.orig.tar.xz 9717615b7d6ae1f3e4f6d6d29e37a48caa7fbed1 9016 python-dendropy_4.5.1-1.debian.tar.xz Checksums-Sha256: 0f3da3d8e299129c2e1658d3f7037ac4bf2479c3e1e729d14f08366f430a711d 7713452 python-dendropy_4.5.1.orig.tar.xz 570b1c2e0d8c6725823455e3cbcd099996ec34935fba005c98c2f2024a4339d9 9016 python-dendropy_4.5.1-1.debian.tar.xz Files: 4c888e3ae662119dceb221afc23d4a03 7713452 python-dendropy_4.5.1.orig.tar.xz 56de6995c9113420a53a354782636730 9016 python-dendropy_4.5.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAl+sH+YUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafFLtQ/7BQQmi1lYHYWa1wFpustLtW1KF0a0 w/NCW+ycz1VTg7oY1M7mqwRy3IT1u/XTW8JLyJRtJbw37CMfTf/oPfiIAdcgBUHs GuNgud4iKGuzb1+oQhd//NpnfiNcKnDWKtyYxxb/Wa91lh7t/gNlpjnMyl1k4TF/ bXlKC0R+6aiVo4DsXtbUwXxUcCKgzHvyGLXVMuXONyQCW9njSoxcZEoQaoLxATBo Mz2uEkLylQgK4rAwMPsAEg3hc/EVpaaKhifRpk7scBD3BvBvxgPuVrsfkxaR+348 z3YnUI/U6vs7ZMyQsLW4IUm5zLXLSP1iiUPHUMLszSdcP/7ldc7OToS8vTSc9bn4 h9Fw/YslpZ7Fa1IVN5SKHkfdyeM4m1ieR9a0VSXLX8CdojwCP1i+G3yiO9o6VB9M 3nGLpbjN8zEfuwqvlW1ch2uycXbdEKfLCH9RIpRKLBNkXAwKTclheOdpBz+8cCz9 B2dwni9STrsZidydQSm8p6G1G9Qg3MrHx3tsWvKr+jHZWiWPPctWZW6I6R3wabeO x6Fu4zypvUQK71qVng5CShLBqpyKJHOWqEADmxEpBgVFbO662tTNit86oIX6l1VX /b+RvgFBIFBnvfA90GMUFk/HslmUJnqFpn0cioAzp7hP3/yRfGxOfEwKqtQEA+9k qSiEMIbf7ba+Y7Y= =PRuS -----END PGP SIGNATURE----- Thu Feb 10 13:16:14 UTC 2022 I: Checking whether the package is not for us Thu Feb 10 13:16:14 UTC 2022 I: Starting 1st build on remote node ionos11-amd64.debian.net. Thu Feb 10 13:16:14 UTC 2022 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Thu Feb 10 13:16:51 UTC 2022 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Feb 10 01:16:16 -12 2022 I: pbuilder-time-stamp: 1644498976 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-dendropy_4.5.1-1.dsc] I: copying [./python-dendropy_4.5.1.orig.tar.xz] I: copying [./python-dendropy_4.5.1-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.ewrY2kPZ/trustedkeys.kbx': General error gpgv: Signature made Wed Nov 11 05:31:18 2020 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-dendropy_4.5.1-1.dsc dpkg-source: info: extracting python-dendropy in python-dendropy-4.5.1 dpkg-source: info: unpacking python-dendropy_4.5.1.orig.tar.xz dpkg-source: info: unpacking python-dendropy_4.5.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying do_not_try_running_non-existing_testsuite.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/185476/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='863da454b8ab47efbd7456c55a0195a8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='185476' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.0FKJbPGNpl/pbuilderrc_eWfl --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.0FKJbPGNpl/b1 --logfile b1/build.log python-dendropy_4.5.1-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 5.10.0-11-amd64 #1 SMP Debian 5.10.92-1 (2022-01-18) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 4 2021 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jul 28 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 28 2021 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jul 28 2021 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 28 2021 more -rwsr-xr-x 1 root root 55528 Jul 28 2021 mount -rwxr-xr-x 1 root root 18664 Jul 28 2021 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Feb 6 21:25 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jul 28 2021 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 28 2021 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 28 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/185476/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libpipeline1{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 49 newly installed, 0 to remove and 0 not upgraded. Need to get 24.6 MB of archives. After unpacking 92.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 python3-all amd64 3.9.2-3 [1056 B] Get: 48 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB] Fetched 24.6 MB in 0s (81.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../1-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_amd64.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/python-dendropy-4.5.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-dendropy_4.5.1-1_source.changes dpkg-buildpackage: info: source package python-dendropy dpkg-buildpackage: info: source version 4.5.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py clean -setup.py: DendroPy version 4.5.1 -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.utility - dendropy.simulate - dendropy.model - dendropy.mathlib - dendropy.legacy - dendropy.interop - dendropy.datamodel - dendropy.dataio - dendropy.calculate - dendropy.utility.libexec -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running clean removing '/build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config -setup.py: DendroPy version 4.5.1 -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.utility - dendropy.simulate - dendropy.model - dendropy.mathlib - dendropy.legacy - dendropy.interop - dendropy.datamodel - dendropy.dataio - dendropy.calculate - dendropy.utility.libexec -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build -setup.py: DendroPy version 4.5.1 -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.utility - dendropy.simulate - dendropy.model - dendropy.mathlib - dendropy.legacy - dendropy.interop - dendropy.datamodel - dendropy.dataio - dendropy.calculate - dendropy.utility.libexec -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running build running build_py creating /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy copying src/dendropy/__main__.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy copying src/dendropy/__init__.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy creating /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility copying src/dendropy/utility/vcsinfo.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility copying src/dendropy/utility/urlio.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility copying src/dendropy/utility/timeprocessing.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility copying src/dendropy/utility/textprocessing.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility copying src/dendropy/utility/terminal.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility copying src/dendropy/utility/processio.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility copying src/dendropy/utility/metavar.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility copying src/dendropy/utility/messaging.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility copying src/dendropy/utility/filesys.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility copying src/dendropy/utility/error.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility copying src/dendropy/utility/deprecate.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility copying src/dendropy/utility/debug.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility copying src/dendropy/utility/container.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility copying src/dendropy/utility/constants.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility copying src/dendropy/utility/cli.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility copying src/dendropy/utility/bitprocessing.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility copying src/dendropy/utility/bibtex.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility copying src/dendropy/utility/__init__.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility creating /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/simulate copying src/dendropy/simulate/treesim.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/simulate copying src/dendropy/simulate/popgensim.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/simulate copying src/dendropy/simulate/charsim.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/simulate copying src/dendropy/simulate/__init__.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/simulate creating /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/model copying src/dendropy/model/treeshape.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/model copying src/dendropy/model/reconcile.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/model copying src/dendropy/model/protractedspeciation.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/model copying src/dendropy/model/parsimony.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/model copying src/dendropy/model/multispeciescoalescent.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/model copying src/dendropy/model/discrete.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/model copying src/dendropy/model/continuous.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/model copying src/dendropy/model/coalescent.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/model copying src/dendropy/model/birthdeath.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/model copying src/dendropy/model/__init__.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/model creating /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/mathlib copying src/dendropy/mathlib/statistics.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/mathlib copying src/dendropy/mathlib/probability.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/mathlib copying src/dendropy/mathlib/mathfn.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/mathlib copying src/dendropy/mathlib/__init__.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/mathlib creating /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treesum.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treesplit.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treesim.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treemanip.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treecalc.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy copying src/dendropy/legacy/seqsim.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy copying src/dendropy/legacy/seqmodel.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy copying src/dendropy/legacy/reconcile.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy copying src/dendropy/legacy/popgenstat.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy copying src/dendropy/legacy/popgensim.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy copying src/dendropy/legacy/ncbi.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy copying src/dendropy/legacy/continuous.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy copying src/dendropy/legacy/coalescent.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy copying src/dendropy/legacy/__init__.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy creating /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop copying src/dendropy/interop/seqgen.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop copying src/dendropy/interop/rstats.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop copying src/dendropy/interop/rspr.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop copying src/dendropy/interop/raxml.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop copying src/dendropy/interop/paup.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop copying src/dendropy/interop/muscle.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop copying src/dendropy/interop/itol.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop copying src/dendropy/interop/genbank.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop copying src/dendropy/interop/gbif.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop copying src/dendropy/interop/ete.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop copying src/dendropy/interop/entrez.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop copying src/dendropy/interop/biopython.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop copying src/dendropy/interop/ape.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop copying src/dendropy/interop/__init__.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop creating /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/treemodel.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/treecollectionmodel.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/taxonmodel.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/datasetmodel.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/charstatemodel.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/charmatrixmodel.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/basemodel.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/__init__.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/datamodel creating /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio copying src/dendropy/dataio/xmlprocessing.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio copying src/dendropy/dataio/tokenizer.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio copying src/dendropy/dataio/phylipwriter.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio copying src/dendropy/dataio/phylipreader.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexusyielder.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexuswriter.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexusreader.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexusprocessing.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexmlyielder.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexmlwriter.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexmlreader.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio copying src/dendropy/dataio/newickyielder.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio copying src/dendropy/dataio/newickwriter.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio copying src/dendropy/dataio/newickreader.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio copying src/dendropy/dataio/newick.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio copying src/dendropy/dataio/multiphylipreader.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio copying src/dendropy/dataio/ioservice.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio copying src/dendropy/dataio/fastawriter.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio copying src/dendropy/dataio/fastareader.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio copying src/dendropy/dataio/__init__.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio creating /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/calculate copying src/dendropy/calculate/treesum.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/calculate copying src/dendropy/calculate/treescore.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/calculate copying src/dendropy/calculate/treemeasure.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/calculate copying src/dendropy/calculate/treecompare.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/calculate copying src/dendropy/calculate/statistics.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/calculate copying src/dendropy/calculate/profiledistance.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/calculate copying src/dendropy/calculate/probability.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/calculate copying src/dendropy/calculate/popgenstat.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/calculate copying src/dendropy/calculate/phylogeneticdistance.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/calculate copying src/dendropy/calculate/mathfn.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/calculate copying src/dendropy/calculate/combinatorics.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/calculate copying src/dendropy/calculate/__init__.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/calculate creating /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility/libexec copying src/dendropy/utility/libexec/__init__.py -> /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility/libexec running egg_info writing src/DendroPy.egg-info/PKG-INFO writing dependency_links to src/DendroPy.egg-info/dependency_links.txt writing entry points to src/DendroPy.egg-info/entry_points.txt writing requirements to src/DendroPy.egg-info/requires.txt writing top-level names to src/DendroPy.egg-info/top_level.txt reading manifest file 'src/DendroPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'doc/Makefile' warning: no files found matching '*' under directory 'doc/source' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.idea' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' running build_scripts creating build creating build/scripts-3.9 copying and adjusting applications/sumtrees/sumtrees.py -> build/scripts-3.9 copying and adjusting applications/sumlabels/sumlabels.py -> build/scripts-3.9 copying and adjusting applications/dendropy-format/dendropy-format -> build/scripts-3.9 changing mode of build/scripts-3.9/sumtrees.py from 644 to 755 changing mode of build/scripts-3.9/sumlabels.py from 644 to 755 changing mode of build/scripts-3.9/dendropy-format from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py test -setup.py: DendroPy version 4.5.1 -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.utility - dendropy.simulate - dendropy.model - dendropy.mathlib - dendropy.legacy - dendropy.interop - dendropy.datamodel - dendropy.dataio - dendropy.calculate - dendropy.utility.libexec -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running test WARNING: Testing via this command is deprecated and will be removed in a future version. Users looking for a generic test entry point independent of test runner are encouraged to use tox. running egg_info writing src/DendroPy.egg-info/PKG-INFO writing dependency_links to src/DendroPy.egg-info/dependency_links.txt writing entry points to src/DendroPy.egg-info/entry_points.txt writing requirements to src/DendroPy.egg-info/requires.txt writing top-level names to src/DendroPy.egg-info/top_level.txt reading manifest file 'src/DendroPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'doc/Makefile' warning: no files found matching '*' under directory 'doc/source' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.idea' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' running build_ext ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/python-dendropy-4.5.1/debian/python3-dendropy -setup.py: DendroPy version 4.5.1 -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.utility - dendropy.simulate - dendropy.model - dendropy.mathlib - dendropy.legacy - dendropy.interop - dendropy.datamodel - dendropy.dataio - dendropy.calculate - dendropy.utility.libexec -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running install running build running build_py running egg_info writing src/DendroPy.egg-info/PKG-INFO writing dependency_links to src/DendroPy.egg-info/dependency_links.txt writing entry points to src/DendroPy.egg-info/entry_points.txt writing requirements to src/DendroPy.egg-info/requires.txt writing top-level names to src/DendroPy.egg-info/top_level.txt reading manifest file 'src/DendroPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'doc/Makefile' warning: no files found matching '*' under directory 'doc/source' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.idea' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/python-dendropy-4.5.1/debian/python3-dendropy creating /build/python-dendropy-4.5.1/debian/python3-dendropy/usr creating /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib creating /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9 creating /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages creating /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy creating /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/calculate copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/calculate/__init__.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/calculate copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/calculate/combinatorics.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/calculate copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/calculate/mathfn.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/calculate copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/calculate/phylogeneticdistance.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/calculate copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/calculate/popgenstat.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/calculate copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/calculate/probability.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/calculate copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/calculate/profiledistance.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/calculate copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/calculate/statistics.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/calculate copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/calculate/treecompare.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/calculate copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/calculate/treemeasure.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/calculate copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/calculate/treescore.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/calculate copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/calculate/treesum.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/calculate creating /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio/__init__.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio/fastareader.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio/fastawriter.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio/ioservice.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio/multiphylipreader.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio/newick.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio/newickreader.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio/newickwriter.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio/newickyielder.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio/nexmlreader.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio/nexmlwriter.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio/nexmlyielder.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio/nexusprocessing.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio/nexusreader.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio/nexuswriter.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio/nexusyielder.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio/phylipreader.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio/phylipwriter.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio/tokenizer.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/dataio/xmlprocessing.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio creating /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/datamodel copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/datamodel/__init__.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/datamodel copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/datamodel/basemodel.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/datamodel copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/datamodel/charmatrixmodel.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/datamodel copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/datamodel/charstatemodel.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/datamodel copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/datamodel/datasetmodel.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/datamodel copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/datamodel/taxonmodel.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/datamodel copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/datamodel/treecollectionmodel.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/datamodel copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/datamodel/treemodel.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/datamodel creating /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop/__init__.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop/ape.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop/biopython.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop/entrez.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop/ete.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop/gbif.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop/genbank.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop/itol.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop/muscle.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop/paup.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop/raxml.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop/rspr.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop/rstats.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/interop/seqgen.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop creating /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy/__init__.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy/coalescent.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy/continuous.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy/ncbi.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy/popgensim.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy/popgenstat.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy/reconcile.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy/seqmodel.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy/seqsim.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy/treecalc.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy/treemanip.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy/treesim.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy/treesplit.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/legacy/treesum.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy creating /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/mathlib copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/mathlib/__init__.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/mathlib copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/mathlib/mathfn.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/mathlib copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/mathlib/probability.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/mathlib copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/mathlib/statistics.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/mathlib creating /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/model copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/model/__init__.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/model copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/model/birthdeath.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/model copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/model/coalescent.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/model copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/model/continuous.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/model copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/model/discrete.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/model copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/model/multispeciescoalescent.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/model copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/model/parsimony.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/model copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/model/protractedspeciation.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/model copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/model/reconcile.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/model copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/model/treeshape.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/model creating /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/simulate copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/simulate/__init__.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/simulate copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/simulate/charsim.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/simulate copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/simulate/popgensim.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/simulate copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/simulate/treesim.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/simulate creating /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility creating /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility/libexec copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility/libexec/__init__.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility/libexec copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility/__init__.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility/bibtex.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility/bitprocessing.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility/cli.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility/constants.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility/container.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility/debug.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility/deprecate.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility/error.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility/filesys.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility/messaging.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility/metavar.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility/processio.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility/terminal.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility/textprocessing.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility/timeprocessing.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility/urlio.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/utility/vcsinfo.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/__init__.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy copying /build/python-dendropy-4.5.1/.pybuild/cpython3_3.9_dendropy/build/dendropy/__main__.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/calculate/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/calculate/combinatorics.py to combinatorics.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/calculate/mathfn.py to mathfn.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/calculate/phylogeneticdistance.py to phylogeneticdistance.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/calculate/popgenstat.py to popgenstat.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/calculate/probability.py to probability.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/calculate/profiledistance.py to profiledistance.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/calculate/statistics.py to statistics.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/calculate/treecompare.py to treecompare.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/calculate/treemeasure.py to treemeasure.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/calculate/treescore.py to treescore.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/calculate/treesum.py to treesum.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio/fastareader.py to fastareader.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio/fastawriter.py to fastawriter.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio/ioservice.py to ioservice.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio/multiphylipreader.py to multiphylipreader.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio/newick.py to newick.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio/newickreader.py to newickreader.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio/newickwriter.py to newickwriter.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio/newickyielder.py to newickyielder.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio/nexmlreader.py to nexmlreader.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio/nexmlwriter.py to nexmlwriter.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio/nexmlyielder.py to nexmlyielder.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio/nexusprocessing.py to nexusprocessing.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio/nexusreader.py to nexusreader.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio/nexuswriter.py to nexuswriter.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio/nexusyielder.py to nexusyielder.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio/phylipreader.py to phylipreader.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio/phylipwriter.py to phylipwriter.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio/tokenizer.py to tokenizer.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/dataio/xmlprocessing.py to xmlprocessing.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/datamodel/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/datamodel/basemodel.py to basemodel.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/datamodel/charmatrixmodel.py to charmatrixmodel.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/datamodel/charstatemodel.py to charstatemodel.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/datamodel/datasetmodel.py to datasetmodel.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/datamodel/taxonmodel.py to taxonmodel.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/datamodel/treecollectionmodel.py to treecollectionmodel.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/datamodel/treemodel.py to treemodel.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop/ape.py to ape.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop/biopython.py to biopython.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop/entrez.py to entrez.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop/ete.py to ete.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop/gbif.py to gbif.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop/genbank.py to genbank.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop/itol.py to itol.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop/muscle.py to muscle.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop/paup.py to paup.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop/raxml.py to raxml.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop/rspr.py to rspr.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop/rstats.py to rstats.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/interop/seqgen.py to seqgen.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy/coalescent.py to coalescent.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy/continuous.py to continuous.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy/ncbi.py to ncbi.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy/popgensim.py to popgensim.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy/popgenstat.py to popgenstat.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy/reconcile.py to reconcile.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy/seqmodel.py to seqmodel.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy/seqsim.py to seqsim.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy/treecalc.py to treecalc.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy/treemanip.py to treemanip.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy/treesim.py to treesim.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy/treesplit.py to treesplit.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/legacy/treesum.py to treesum.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/mathlib/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/mathlib/mathfn.py to mathfn.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/mathlib/probability.py to probability.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/mathlib/statistics.py to statistics.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/model/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/model/birthdeath.py to birthdeath.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/model/coalescent.py to coalescent.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/model/continuous.py to continuous.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/model/discrete.py to discrete.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/model/multispeciescoalescent.py to multispeciescoalescent.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/model/parsimony.py to parsimony.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/model/protractedspeciation.py to protractedspeciation.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/model/reconcile.py to reconcile.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/model/treeshape.py to treeshape.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/simulate/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/simulate/charsim.py to charsim.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/simulate/popgensim.py to popgensim.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/simulate/treesim.py to treesim.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility/libexec/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility/bibtex.py to bibtex.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility/bitprocessing.py to bitprocessing.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility/cli.py to cli.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility/constants.py to constants.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility/container.py to container.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility/debug.py to debug.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility/deprecate.py to deprecate.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility/error.py to error.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility/filesys.py to filesys.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility/messaging.py to messaging.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility/metavar.py to metavar.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility/processio.py to processio.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility/terminal.py to terminal.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility/textprocessing.py to textprocessing.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility/timeprocessing.py to timeprocessing.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility/urlio.py to urlio.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/utility/vcsinfo.py to vcsinfo.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/dendropy/__main__.py to __main__.cpython-39.pyc running install_egg_info Copying src/DendroPy.egg-info to /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/lib/python3.9/dist-packages/DendroPy-4.5.1.egg-info Skipping SOURCES.txt running install_scripts creating /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/bin copying build/scripts-3.9/dendropy-format -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/bin copying build/scripts-3.9/sumlabels.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/bin copying build/scripts-3.9/sumtrees.py -> /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/bin changing mode of /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/bin/dendropy-format to 755 changing mode of /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/bin/sumlabels.py to 755 changing mode of /build/python-dendropy-4.5.1/debian/python3-dendropy/usr/bin/sumtrees.py to 755 debian/rules override_dh_install make[1]: Entering directory '/build/python-dendropy-4.5.1' dh_install mkdir -p debian/sumtrees/usr/bin mv debian/python3-dendropy/usr/bin/sumtrees.py debian/sumtrees/usr/bin/sumtrees mv applications/dendropy-format/dendropy-format debian/sumtrees/usr/bin/dendropy-format rm -rf debian/python3-dendropy/usr/bin make[1]: Leaving directory '/build/python-dendropy-4.5.1' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/sumtrees/usr/bin/dendropy-format dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package sumtrees: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package python3-dendropy: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-dendropy' in '../python3-dendropy_4.5.1-1_all.deb'. dpkg-deb: building package 'sumtrees' in '../sumtrees_4.5.1-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-dendropy_4.5.1-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/185476 and its subdirectories I: Current time: Thu Feb 10 01:16:51 -12 2022 I: pbuilder-time-stamp: 1644499011 Thu Feb 10 13:16:52 UTC 2022 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Thu Feb 10 13:16:52 UTC 2022 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Thu Feb 10 13:17:46 UTC 2022 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Thu Feb 10 13:17:46 UTC 2022 I: python-dendropy_4.5.1-1_amd64.changes: Format: 1.8 Date: Wed, 11 Nov 2020 19:39:05 +0530 Source: python-dendropy Binary: python3-dendropy sumtrees Architecture: all Version: 4.5.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: python3-dendropy - DendroPy Phylogenetic Computing Library (Python 3) sumtrees - Phylogenetic Tree Summarization and Annotation Changes: python-dendropy (4.5.1-1) unstable; urgency=medium . [ Nilesh Patra ] * Team Upload. * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Vendor dendropy-format * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. Checksums-Sha1: 1f98f19fd9ad0056a8f93d65f895c9a5d3015c46 5655 python-dendropy_4.5.1-1_amd64.buildinfo b2ae77cd2999f874e2e7fbb45b70ccaede2a9f21 272584 python3-dendropy_4.5.1-1_all.deb c3db71ad83652d96bacda3e4e7d03e6ffba1ca01 184184 sumtrees_4.5.1-1_all.deb Checksums-Sha256: 2b82cc0b1ce5cef76668e82338d6cd6e988a7c58f39fe643a58da3549f146015 5655 python-dendropy_4.5.1-1_amd64.buildinfo 94ea6d2ee08c0a5121837456085f24fbdfa56374758e837c6271671f8ce61c56 272584 python3-dendropy_4.5.1-1_all.deb 748b4810029eb9143dc9eff2e930ce02ad47d93351bc495d6d57aa24fbe51c18 184184 sumtrees_4.5.1-1_all.deb Files: d7c0f367db07d3a1671d80ec63ad374f 5655 python optional python-dendropy_4.5.1-1_amd64.buildinfo 6879e94187eceaf3e5b8c263c8046213 272584 python optional python3-dendropy_4.5.1-1_all.deb caf391cda26e3a38a3cc2bb98ba51742 184184 python optional sumtrees_4.5.1-1_all.deb Thu Feb 10 13:17:48 UTC 2022 I: diffoscope 203 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 5400 --html /srv/reproducible-results/rbuild-debian/tmp.0FKJbPGNpl/python-dendropy_4.5.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.0FKJbPGNpl/python-dendropy_4.5.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.0FKJbPGNpl/python-dendropy_4.5.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.0FKJbPGNpl/b1/python-dendropy_4.5.1-1_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.0FKJbPGNpl/b2/python-dendropy_4.5.1-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.310s) 0.310s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.027s) 0.027s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Thu Feb 10 13:18:04 UTC 2022 I: diffoscope 203 found no differences in the changes files, and a .buildinfo file also exists. Thu Feb 10 13:18:04 UTC 2022 I: python-dendropy from bullseye built successfully and reproducibly on amd64. Thu Feb 10 13:18:05 UTC 2022 I: Submitting .buildinfo files to external archives: Thu Feb 10 13:18:05 UTC 2022 I: Submitting 8.0K b1/python-dendropy_4.5.1-1_amd64.buildinfo.asc Thu Feb 10 13:18:06 UTC 2022 I: Submitting 8.0K b2/python-dendropy_4.5.1-1_amd64.buildinfo.asc Thu Feb 10 13:18:07 UTC 2022 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Feb 10 13:18:07 UTC 2022 I: Done submitting .buildinfo files. Thu Feb 10 13:18:07 UTC 2022 I: Removing signed python-dendropy_4.5.1-1_amd64.buildinfo.asc files: removed './b1/python-dendropy_4.5.1-1_amd64.buildinfo.asc' removed './b2/python-dendropy_4.5.1-1_amd64.buildinfo.asc'