Tue Jul 25 16:35:57 UTC 2023 I: starting to build pplacer/bullseye/amd64 on jenkins on '2023-07-25 16:35' Tue Jul 25 16:35:57 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_5/3934/console.log Tue Jul 25 16:35:57 UTC 2023 I: Downloading source for bullseye/pplacer=1.1~alpha19-4 --2023-07-25 16:35:58-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/pplacer/pplacer_1.1%7ealpha19-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2210 (2.2K) [text/prs.lines.tag] Saving to: ‘pplacer_1.1~alpha19-4.dsc’ 0K .. 100% 202M=0s 2023-07-25 16:35:58 (202 MB/s) - ‘pplacer_1.1~alpha19-4.dsc’ saved [2210/2210] Tue Jul 25 16:35:58 UTC 2023 I: pplacer_1.1~alpha19-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pplacer Binary: pplacer Architecture: any Version: 1.1~alpha19-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Shayan Doust Homepage: https://github.com/matsen/pplacer Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/pplacer Vcs-Git: https://salsa.debian.org/med-team/pplacer.git Build-Depends: debhelper-compat (= 13), dh-ocaml, ocaml-nox, ocamlbuild, libcsv-ocaml-dev, libxmlm-ocaml-dev, libbatteries-ocaml-dev, libmcl-ocaml-dev, libocamlgsl-ocaml-dev, libsqlite3-ocaml-dev, libzip-ocaml-dev, mcl, libounit-ocaml-dev Package-List: pplacer deb science optional arch=any Checksums-Sha1: 152d0de4b59c6e3debc04666706ff0828b9d82c0 830574 pplacer_1.1~alpha19.orig.tar.gz 20d4c7f7eba9a386068ea354c5dac57bee4b7e6b 28220 pplacer_1.1~alpha19-4.debian.tar.xz Checksums-Sha256: 0e74f3bdaf996c6e54695e23bc2180877f2de0fadc80f0fe9d066aa445b3347c 830574 pplacer_1.1~alpha19.orig.tar.gz 1ce11657a5736360332e103572a36fe3a43b5fdab51c1a7925006841df783388 28220 pplacer_1.1~alpha19-4.debian.tar.xz Files: d21814136ee712949c58424016b22853 830574 pplacer_1.1~alpha19.orig.tar.gz dafe44d2a01d6049df20774102323550 28220 pplacer_1.1~alpha19-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAl/GYD4UHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafHp8Q//ZVRTBm3Isfg310AznfofW5o00dRT Teb/ktNA9rnsE9o8BjpxN3baenxim24VBUlI+u353rZVAmBwvwYWi7J4Z00zTr/P 093m+f4C6p4ezs0j2GLfOu46gYs6f/2fC4A6JVEOvv6MHglwEPx7NWuSx7wNM9eX +B96jSqhLCwHiDSqXVJL+cVbOCv35esodGHfnF7j+F9pKb5HNZwUtrqgrdS8yZuT LFiVpbY7ssInw2rBXqtAQaRdFHauEjNiUADd0RfRW0HioZdBU+RBaDLdfzlxBp0A lMjDG88lk7psdc1cHn1J4FYSTHn7ylz6jZF4fJvfRtziX5Z30CX1qMuA6mQ6VD9u 6138oFuu5Ete0IBspHrpkU2Yzj8Wjs1yv8uYSxAT26GpTkmuC4hSxN9YW/Jtechd 8nttunUzjbDMv5B8ZNkPdPDfVAdHhqLQ6T1r8CrScDsVA7UbnUs+hAIBF7eDDEz7 N6dHMBucE5o0ThYfxCSK+zFGKGErwSk5R6qN14kyrSmmBMJXM3W6xuPnjy76ixny pw++uj3q4SDmoHb/JVHZDGxL0/Mg3XfFIInFk9OUIwYzTwJtIGf5bt8yJXArr70l iNk713VH+UmpfmzjjaNBwRCCvBmn2shxkmf1LAri+8B1b7Fzu4UMC54nu/Bqn+wS j2F1C3Er2+iC36E= =h0al -----END PGP SIGNATURE----- Tue Jul 25 16:35:58 UTC 2023 I: Checking whether the package is not for us Tue Jul 25 16:35:58 UTC 2023 I: Starting 1st build on remote node ionos11-amd64.debian.net. Tue Jul 25 16:35:58 UTC 2023 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Tue Jul 25 16:39:04 UTC 2023 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jul 25 04:36:00 -12 2023 I: pbuilder-time-stamp: 1690302960 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pplacer_1.1~alpha19-4.dsc] I: copying [./pplacer_1.1~alpha19.orig.tar.gz] I: copying [./pplacer_1.1~alpha19-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.iUGhPeOu/trustedkeys.kbx': General error gpgv: Signature made Tue Dec 1 03:24:46 2020 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./pplacer_1.1~alpha19-4.dsc dpkg-source: info: extracting pplacer in pplacer-1.1~alpha19 dpkg-source: info: unpacking pplacer_1.1~alpha19.orig.tar.gz dpkg-source: info: unpacking pplacer_1.1~alpha19-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying ocamlbuild dpkg-source: info: applying fix_makefile.patch dpkg-source: info: applying ocaml_stdlib dpkg-source: info: applying ocaml_bytes dpkg-source: info: applying spelling.patch dpkg-source: info: applying ocaml-batteries.patch dpkg-source: info: applying PR-337.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1466623/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15 ' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='069cd5ee3ec44c039f178e410dc7c895' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1466623' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.KF9u9gIi/pbuilderrc_2tQJ --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.KF9u9gIi/b1 --logfile b1/build.log pplacer_1.1~alpha19-4.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 6.1.0-10-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.38-1 (2023-07-14) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jan 20 2022 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Jan 24 20:23 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Jan 24 20:23 fgrep -rwxr-xr-x 1 root root 69032 Jan 20 2022 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Jan 24 20:23 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98048 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jan 20 2022 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jan 20 2022 more -rwsr-xr-x 1 root root 55528 Jan 20 2022 mount -rwxr-xr-x 1 root root 18664 Jan 20 2022 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 6 21:25 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jan 20 2022 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jan 20 2022 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jan 20 2022 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/1466623/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-ocaml, ocaml-nox, ocamlbuild, libcsv-ocaml-dev, libxmlm-ocaml-dev, libbatteries-ocaml-dev, libmcl-ocaml-dev, libocamlgsl-ocaml-dev, libsqlite3-ocaml-dev, libzip-ocaml-dev, mcl, libounit-ocaml-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19707 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-ocaml; however: Package dh-ocaml is not installed. pbuilder-satisfydepends-dummy depends on ocaml-nox; however: Package ocaml-nox is not installed. pbuilder-satisfydepends-dummy depends on ocamlbuild; however: Package ocamlbuild is not installed. pbuilder-satisfydepends-dummy depends on libcsv-ocaml-dev; however: Package libcsv-ocaml-dev is not installed. pbuilder-satisfydepends-dummy depends on libxmlm-ocaml-dev; however: Package libxmlm-ocaml-dev is not installed. pbuilder-satisfydepends-dummy depends on libbatteries-ocaml-dev; however: Package libbatteries-ocaml-dev is not installed. pbuilder-satisfydepends-dummy depends on libmcl-ocaml-dev; however: Package libmcl-ocaml-dev is not installed. pbuilder-satisfydepends-dummy depends on libocamlgsl-ocaml-dev; however: Package libocamlgsl-ocaml-dev is not installed. pbuilder-satisfydepends-dummy depends on libsqlite3-ocaml-dev; however: Package libsqlite3-ocaml-dev is not installed. pbuilder-satisfydepends-dummy depends on libzip-ocaml-dev; however: Package libzip-ocaml-dev is not installed. pbuilder-satisfydepends-dummy depends on mcl; however: Package mcl is not installed. pbuilder-satisfydepends-dummy depends on libounit-ocaml-dev; however: Package libounit-ocaml-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-ocaml{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbatteries-ocaml-dev{a} libcsv-ocaml-dev{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libfindlib-ocaml{a} libgsl-dev{a} libgsl25{a} libgslcblas0{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libmcl-ocaml-dev{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnum-ocaml{a} libnum-ocaml-dev{a} libocamlgsl-ocaml{a} libocamlgsl-ocaml-dev{a} libounit-ocaml-dev{a} libpipeline1{a} libsigsegv2{a} libsqlite3-dev{a} libsqlite3-ocaml{a} libsqlite3-ocaml-dev{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} libxmlm-ocaml-dev{a} libzip-ocaml{a} libzip-ocaml-dev{a} m4{a} man-db{a} mcl{a} ocaml-base-nox{a} ocaml-compiler-libs{a} ocaml-findlib{a} ocaml-interp{a} ocaml-nox{a} ocamlbuild{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl ledit libarchive-cpio-perl libbatteries-ocaml-doc libfindlib-ocaml-dev libgpm2 libltdl-dev libmail-sendmail-perl lynx ocaml-man rlfe rlwrap wget 0 packages upgraded, 61 newly installed, 0 to remove and 0 not upgraded. Need to get 141 MB of archives. After unpacking 613 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8+deb11u1 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 dh-ocaml all 1.1.3 [82.9 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 ocaml-base-nox amd64 4.11.1-4 [707 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libfindlib-ocaml amd64 1.8.1-2 [193 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 ocaml-findlib amd64 1.8.1-2 [477 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libnum-ocaml amd64 1.4-1 [171 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2+deb11u1 [102 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libncurses-dev amd64 6.2+20201114-2+deb11u1 [344 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libncurses5-dev amd64 6.2+20201114-2+deb11u1 [948 B] Get: 40 http://deb.debian.org/debian bullseye/main amd64 ocaml-compiler-libs amd64 4.11.1-4 [29.9 MB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 ocaml-interp amd64 4.11.1-4 [5861 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 ocaml-nox amd64 4.11.1-4 [68.2 MB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 libnum-ocaml-dev amd64 1.4-1 [107 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 libbatteries-ocaml-dev amd64 3.1.0-2 [8487 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 libcsv-ocaml-dev amd64 2.4-1+b1 [312 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 libgslcblas0 amd64 2.6+dfsg-2 [102 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 libgsl25 amd64 2.6+dfsg-2 [934 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 libgsl-dev amd64 2.6+dfsg-2 [1123 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 mcl amd64 1:14-137+ds-9+b1 [586 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 libmcl-ocaml-dev amd64 1:14-137+ds-9+b1 [258 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 libocamlgsl-ocaml amd64 1.24.3-1+b1 [439 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 libocamlgsl-ocaml-dev amd64 1.24.3-1+b1 [1032 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libounit-ocaml-dev amd64 2.2.3-2+b1 [967 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 libsqlite3-dev amd64 3.34.1-3 [963 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 libsqlite3-ocaml amd64 5.0.2-1+b1 [65.7 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 libsqlite3-ocaml-dev amd64 5.0.2-1+b1 [120 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 libxmlm-ocaml-dev amd64 1.3.0-2+b3 [398 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 libzip-ocaml amd64 1.10-1+b1 [85.3 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2+deb11u2 [191 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 libzip-ocaml-dev amd64 1.10-1+b1 [48.6 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 ocamlbuild amd64 0.14.0-2+b1 [943 kB] Fetched 141 MB in 2s (62.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19707 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8+deb11u1_amd64.deb ... Unpacking bsdextrautils (2.36.1-8+deb11u1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../05-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../07-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../09-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../10-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../23-libelf1_0.183-1_amd64.deb ... Unpacking libelf1:amd64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.13+20210201-1_amd64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../25-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../26-libxml2_2.9.10+dfsg-6.7+deb11u4_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-4_amd64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package dh-ocaml. Preparing to unpack .../31-dh-ocaml_1.1.3_all.deb ... Unpacking dh-ocaml (1.1.3) ... Selecting previously unselected package ocaml-base-nox. Preparing to unpack .../32-ocaml-base-nox_4.11.1-4_amd64.deb ... Unpacking ocaml-base-nox (4.11.1-4) ... Selecting previously unselected package libfindlib-ocaml. Preparing to unpack .../33-libfindlib-ocaml_1.8.1-2_amd64.deb ... Unpacking libfindlib-ocaml (1.8.1-2) ... Selecting previously unselected package ocaml-findlib. Preparing to unpack .../34-ocaml-findlib_1.8.1-2_amd64.deb ... Unpacking ocaml-findlib (1.8.1-2) ... Selecting previously unselected package libnum-ocaml. Preparing to unpack .../35-libnum-ocaml_1.4-1_amd64.deb ... Unpacking libnum-ocaml (1.4-1) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../36-libncurses6_6.2+20201114-2+deb11u1_amd64.deb ... Unpacking libncurses6:amd64 (6.2+20201114-2+deb11u1) ... Selecting previously unselected package libncurses-dev:amd64. Preparing to unpack .../37-libncurses-dev_6.2+20201114-2+deb11u1_amd64.deb ... Unpacking libncurses-dev:amd64 (6.2+20201114-2+deb11u1) ... Selecting previously unselected package libncurses5-dev:amd64. Preparing to unpack .../38-libncurses5-dev_6.2+20201114-2+deb11u1_amd64.deb ... Unpacking libncurses5-dev:amd64 (6.2+20201114-2+deb11u1) ... Selecting previously unselected package ocaml-compiler-libs. Preparing to unpack .../39-ocaml-compiler-libs_4.11.1-4_amd64.deb ... Unpacking ocaml-compiler-libs (4.11.1-4) ... Selecting previously unselected package ocaml-interp. Preparing to unpack .../40-ocaml-interp_4.11.1-4_amd64.deb ... Unpacking ocaml-interp (4.11.1-4) ... Selecting previously unselected package ocaml-nox. Preparing to unpack .../41-ocaml-nox_4.11.1-4_amd64.deb ... Unpacking ocaml-nox (4.11.1-4) ... Selecting previously unselected package libnum-ocaml-dev. Preparing to unpack .../42-libnum-ocaml-dev_1.4-1_amd64.deb ... Unpacking libnum-ocaml-dev (1.4-1) ... Selecting previously unselected package libbatteries-ocaml-dev. Preparing to unpack .../43-libbatteries-ocaml-dev_3.1.0-2_amd64.deb ... Unpacking libbatteries-ocaml-dev (3.1.0-2) ... Selecting previously unselected package libcsv-ocaml-dev. Preparing to unpack .../44-libcsv-ocaml-dev_2.4-1+b1_amd64.deb ... Unpacking libcsv-ocaml-dev (2.4-1+b1) ... Selecting previously unselected package libgslcblas0:amd64. Preparing to unpack .../45-libgslcblas0_2.6+dfsg-2_amd64.deb ... Unpacking libgslcblas0:amd64 (2.6+dfsg-2) ... Selecting previously unselected package libgsl25:amd64. Preparing to unpack .../46-libgsl25_2.6+dfsg-2_amd64.deb ... Unpacking libgsl25:amd64 (2.6+dfsg-2) ... Selecting previously unselected package libgsl-dev. Preparing to unpack .../47-libgsl-dev_2.6+dfsg-2_amd64.deb ... Unpacking libgsl-dev (2.6+dfsg-2) ... Selecting previously unselected package mcl. Preparing to unpack .../48-mcl_1%3a14-137+ds-9+b1_amd64.deb ... Unpacking mcl (1:14-137+ds-9+b1) ... Selecting previously unselected package libmcl-ocaml-dev. Preparing to unpack .../49-libmcl-ocaml-dev_1%3a14-137+ds-9+b1_amd64.deb ... Unpacking libmcl-ocaml-dev (1:14-137+ds-9+b1) ... Selecting previously unselected package libocamlgsl-ocaml. Preparing to unpack .../50-libocamlgsl-ocaml_1.24.3-1+b1_amd64.deb ... Unpacking libocamlgsl-ocaml (1.24.3-1+b1) ... Selecting previously unselected package libocamlgsl-ocaml-dev. Preparing to unpack .../51-libocamlgsl-ocaml-dev_1.24.3-1+b1_amd64.deb ... Unpacking libocamlgsl-ocaml-dev (1.24.3-1+b1) ... Selecting previously unselected package libounit-ocaml-dev. Preparing to unpack .../52-libounit-ocaml-dev_2.2.3-2+b1_amd64.deb ... Unpacking libounit-ocaml-dev (2.2.3-2+b1) ... Selecting previously unselected package libsqlite3-dev:amd64. Preparing to unpack .../53-libsqlite3-dev_3.34.1-3_amd64.deb ... Unpacking libsqlite3-dev:amd64 (3.34.1-3) ... Selecting previously unselected package libsqlite3-ocaml. Preparing to unpack .../54-libsqlite3-ocaml_5.0.2-1+b1_amd64.deb ... Unpacking libsqlite3-ocaml (5.0.2-1+b1) ... Selecting previously unselected package libsqlite3-ocaml-dev. Preparing to unpack .../55-libsqlite3-ocaml-dev_5.0.2-1+b1_amd64.deb ... Unpacking libsqlite3-ocaml-dev (5.0.2-1+b1) ... Selecting previously unselected package libxmlm-ocaml-dev. Preparing to unpack .../56-libxmlm-ocaml-dev_1.3.0-2+b3_amd64.deb ... Unpacking libxmlm-ocaml-dev (1.3.0-2+b3) ... Selecting previously unselected package libzip-ocaml. Preparing to unpack .../57-libzip-ocaml_1.10-1+b1_amd64.deb ... Unpacking libzip-ocaml (1.10-1+b1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../58-zlib1g-dev_1%3a1.2.11.dfsg-2+deb11u2_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-2+deb11u2) ... Selecting previously unselected package libzip-ocaml-dev. Preparing to unpack .../59-libzip-ocaml-dev_1.10-1+b1_amd64.deb ... Unpacking libzip-ocaml-dev (1.10-1+b1) ... Selecting previously unselected package ocamlbuild. Preparing to unpack .../60-ocamlbuild_0.14.0-2+b1_amd64.deb ... Unpacking ocamlbuild (0.14.0-2+b1) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up bsdextrautils (2.36.1-8+deb11u1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up libgslcblas0:amd64 (2.6+dfsg-2) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libgsl25:amd64 (2.6+dfsg-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up dh-ocaml (1.1.3) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libsqlite3-dev:amd64 (3.34.1-3) ... Setting up mcl (1:14-137+ds-9+b1) ... Setting up libncurses6:amd64 (6.2+20201114-2+deb11u1) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2+deb11u2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up ocaml-base-nox (4.11.1-4) ... Setting up libsqlite3-ocaml (5.0.2-1+b1) ... Setting up libelf1:amd64 (0.183-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libncurses-dev:amd64 (6.2+20201114-2+deb11u1) ... Setting up gettext (0.21-4) ... Setting up libgsl-dev (2.6+dfsg-2) ... Setting up libtool (2.4.6-15) ... Setting up libfindlib-ocaml (1.8.1-2) ... Setting up m4 (1.4.18-5) ... Setting up libocamlgsl-ocaml (1.24.3-1+b1) ... Setting up ocamlbuild (0.14.0-2+b1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libzip-ocaml (1.10-1+b1) ... Setting up ocaml-findlib (1.8.1-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up libnum-ocaml (1.4-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libncurses5-dev:amd64 (6.2+20201114-2+deb11u1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up debhelper (13.3.4) ... Setting up ocaml-compiler-libs (4.11.1-4) ... Setting up ocaml-interp (4.11.1-4) ... Setting up ocaml-nox (4.11.1-4) ... Setting up libxmlm-ocaml-dev (1.3.0-2+b3) ... Setting up libnum-ocaml-dev (1.4-1) ... Setting up libocamlgsl-ocaml-dev (1.24.3-1+b1) ... Setting up libmcl-ocaml-dev (1:14-137+ds-9+b1) ... Setting up libounit-ocaml-dev (2.2.3-2+b1) ... Setting up libsqlite3-ocaml-dev (5.0.2-1+b1) ... Setting up libcsv-ocaml-dev (2.4-1+b1) ... Setting up libzip-ocaml-dev (1.10-1+b1) ... Setting up libbatteries-ocaml-dev (3.1.0-2) ... Processing triggers for libc-bin (2.31-13+deb11u6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/pplacer-1.1~alpha19/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pplacer_1.1~alpha19-4_source.changes dpkg-buildpackage: info: source package pplacer dpkg-buildpackage: info: source version 1.1~alpha19-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with=ocaml dh_auto_clean make -j15 clean make[1]: Entering directory '/build/pplacer-1.1~alpha19' rm -rf bin rm -f tests.native ocamlbuild -clean rm -f *.mltop make[1]: Leaving directory '/build/pplacer-1.1~alpha19' dh_ocamlclean dh_clean debian/rules binary dh binary --with=ocaml dh_update_autotools_config dh_autoreconf dh_ocamlinit dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/pplacer-1.1~alpha19' # Fix race condition (fails due to multiple mkdirs) dh_auto_build --no-parallel make -j1 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/pplacer-1.1~alpha19' if [ ! -e bin ]; then mkdir bin; fi make pplacer.native make[3]: Entering directory '/build/pplacer-1.1~alpha19' ocamlbuild pplacer.native /usr/bin/ocamlopt.opt unix.cmxa -I /usr/lib/ocaml/ocamlbuild /usr/lib/ocaml/ocamlbuild/ocamlbuildlib.cmxa myocamlbuild.ml /usr/lib/ocaml/ocamlbuild/ocamlbuild.cmx -o myocamlbuild /bin/sh: 1: git: not found File "_tags", line 8, characters 154-161: Warning: the tag "pkg_str" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. File "_tags", line 8, characters 112-124: Warning: the tag "pkg_bigarray" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. File "_tags", line 8, characters 102-110: Warning: the tag "pkg_unix" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c cdd_src/cddcore.c mv cddcore.o cdd_src/cddcore.o ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c cdd_src/cddio.c mv cddio.o cdd_src/cddio.o ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c cdd_src/cddlib.c + ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c cdd_src/cddlib.c cdd_src/cddlib.c: In function 'dd_DDMain': cdd_src/cddlib.c:116:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 116 | for (itemp=1; cone->OrderVector[itemp]!=hh; itemp++); | ^~~ cdd_src/cddlib.c:117:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 117 | otemp=cone->OrderVector[cone->Iteration]; | ^~~~~ mv cddlib.o cdd_src/cddlib.o ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c cdd_src/cddlp.c mv cddlp.o cdd_src/cddlp.o ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c cdd_src/cddmp.c mv cddmp.o cdd_src/cddmp.o ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c cdd_src/cddproj.c mv cddproj.o cdd_src/cddproj.o ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c cdd_src/setoper.c mv setoper.o cdd_src/setoper.o ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c cdd_src/pplacer_cdd.c mv pplacer_cdd.o cdd_src/pplacer_cdd.o ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c cdd_src/caml_cdd.c mv caml_cdd.o cdd_src/caml_cdd.o ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c pam_src/pam.c mv pam.o pam_src/pam.o ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c pam_src/caml_pam.c + ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c pam_src/caml_pam.c In file included from /usr/lib/ocaml/caml/bigarray.h:23, from pam_src/caml_pam.c:2: pam_src/caml_pam.c: In function 'caml_pam': /usr/lib/ocaml/caml/mlvalues.h:265:23: warning: initialization discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 265 | #define String_val(x) ((const char *) Bp_val(x)) | ^ pam_src/caml_pam.c:18:16: note: in expansion of macro 'String_val' 18 | char *keep = String_val(keep_value); | ^~~~~~~~~~ mv caml_pam.o pam_src/caml_pam.o ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c pplacer_src/linear_c.c mv linear_c.o pplacer_src/linear_c.o ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -c pplacer_src/unix_support.c mv unix_support.o pplacer_src/unix_support.o /usr/bin/ocamlmklib.opt -o cdd_src/cdd cdd_src/cddcore.o cdd_src/cddio.o cdd_src/cddlib.o cdd_src/cddlp.o cdd_src/cddmp.o cdd_src/cddproj.o cdd_src/setoper.o cdd_src/pplacer_cdd.o cdd_src/caml_cdd.o /usr/bin/ocamlmklib.opt -o pam_src/pplacer_pam pam_src/pam.o pam_src/caml_pam.o /usr/bin/ocamlmklib.opt -o pplacer_src/pplacercside pplacer_src/linear_c.o pplacer_src/unix_support.o ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/pplacer.ml > pplacer_src/pplacer.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/check.ml > pplacer_src/check.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/ppatteries.ml > common_src/ppatteries.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/algMap.ml > common_src/algMap.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/mapsSets.ml > common_src/mapsSets.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/ppr.ml > common_src/ppr.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/ppr.cmo common_src/ppr.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/number.ml > common_src/number.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/mapsSets.cmo common_src/mapsSets.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/number.cmo common_src/number.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/algMap.cmo common_src/algMap.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/ppatteries.cmo common_src/ppatteries.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/pplacer_run.ml > pplacer_src/pplacer_run.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/alignment.ml > common_src/alignment.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/fasta.ml > pplacer_src/fasta.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/refpkg_parse.ml > pplacer_src/refpkg_parse.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules json_src/json.ml > json_src/json.ml.depends /usr/bin/ocamllex.opt -q json_src/jsonlex.mll ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules json_src/jsonlex.ml > json_src/jsonlex.ml.depends /usr/bin/ocamlyacc json_src/jsonparse.mly ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules json_src/jsonparse.mli > json_src/jsonparse.mli.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules json_src/jsontype.ml > json_src/jsontype.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I json_src -I cdd_src -I common_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o json_src/jsontype.cmo json_src/jsontype.ml ocamlfind ocamlc -c -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I json_src -I cdd_src -I common_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o json_src/jsonparse.cmi json_src/jsonparse.mli ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I json_src -I cdd_src -I common_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o json_src/jsonlex.cmo json_src/jsonlex.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/simple_json.ml > pplacer_src/simple_json.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I json_src -I cdd_src -I common_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o json_src/json.cmo json_src/json.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/simple_json.cmo pplacer_src/simple_json.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/refpkg_parse.cmo pplacer_src/refpkg_parse.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/linear_utils.ml > common_src/linear_utils.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/nuc_models.ml > pplacer_src/nuc_models.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/prot_models.ml > pplacer_src/prot_models.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/linear_utils.cmo common_src/linear_utils.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/stockholm.ml > pplacer_src/stockholm.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/fasta.cmo pplacer_src/fasta.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/nuc_models.cmo pplacer_src/nuc_models.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/prot_models.cmo pplacer_src/prot_models.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/stockholm.cmo pplacer_src/stockholm.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/check.cmo pplacer_src/check.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/classif_map.ml > pplacer_src/classif_map.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/edge_painting.ml > pplacer_src/edge_painting.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/convex.mli > pplacer_src/convex.mli.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/refpkg.ml > pplacer_src/refpkg.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/alignment.cmo common_src/alignment.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/decor.ml > pplacer_src/decor.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/myxml.ml > pplacer_src/myxml.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/tax_id.ml > pplacer_src/tax_id.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/myxml.cmo pplacer_src/myxml.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/sql.ml > common_src/sql.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/sql.cmo common_src/sql.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/tax_id.cmo pplacer_src/tax_id.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/decor_gtree.ml > pplacer_src/decor_gtree.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/decor.cmo pplacer_src/decor.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/decor_bark.ml > pplacer_src/decor_bark.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/newick_bark.ml > pplacer_src/newick_bark.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/newick_bark.cmo pplacer_src/newick_bark.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/gtree.ml > pplacer_src/gtree.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/bark_map.ml > pplacer_src/bark_map.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/stree.ml > pplacer_src/stree.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/bark_map.cmo pplacer_src/bark_map.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/stree.cmo pplacer_src/stree.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/stree.cmo pplacer_src/stree.ml File "pplacer_src/stree.ml", line 35, characters 12-16: 35 | | Failure "tl" -> invalid_arg "nonroot_node_ids" ^^^^ Warning 52: Code should not depend on the actual values of this constructor's arguments. They are only for information and may change in future versions. (See manual section 9.5) ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/newick_gtree.ml > pplacer_src/newick_gtree.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/file_parsing.ml > common_src/file_parsing.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/gtree.cmo pplacer_src/gtree.ml /usr/bin/ocamllex.opt -q pplacer_src/newick_lexer.mll ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/newick_lexer.ml > pplacer_src/newick_lexer.ml.depends /usr/bin/ocamlyacc pplacer_src/newick_parser.mly ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/newick_parser.mli > pplacer_src/newick_parser.mli.depends ocamlfind ocamlc -c -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/newick_parser.cmi pplacer_src/newick_parser.mli ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/newick_parse_state.ml > pplacer_src/newick_parse_state.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/placement.ml > pplacer_src/placement.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/pquery.ml > pplacer_src/pquery.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/placement.cmo pplacer_src/placement.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/pquery_io.ml > pplacer_src/pquery_io.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/pquery.cmo pplacer_src/pquery.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/file_parsing.cmo common_src/file_parsing.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/newick_lexer.cmo pplacer_src/newick_lexer.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/newick_parse_state.cmo pplacer_src/newick_parse_state.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/pquery_io.cmo pplacer_src/pquery_io.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/decor_bark.cmo pplacer_src/decor_bark.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/newick_gtree.cmo pplacer_src/newick_gtree.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/delayed.ml > common_src/delayed.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/gcat_model.ml > pplacer_src/gcat_model.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/diagd.ml > pplacer_src/diagd.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/linear.ml > pplacer_src/linear.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/tensor.ml > pplacer_src/tensor.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/matrix.mli > pplacer_src/matrix.mli.depends ocamlfind ocamlc -c -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/matrix.cmi pplacer_src/matrix.mli ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/tensor.cmo pplacer_src/tensor.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/linear.cmo pplacer_src/linear.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/glv_arr.ml > pplacer_src/glv_arr.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/glvm.ml > pplacer_src/glvm.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/glvm.cmo pplacer_src/glvm.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/glv_edge.ml > pplacer_src/glv_edge.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/gstar_support.ml > pplacer_src/gstar_support.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/like_stree.ml > pplacer_src/like_stree.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/glv_arr.cmo pplacer_src/glv_arr.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/diagd.cmo pplacer_src/diagd.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/glv_edge.cmo pplacer_src/glv_edge.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/gstar_support.cmo pplacer_src/gstar_support.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/like_stree.cmo pplacer_src/like_stree.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/gmix_model.ml > pplacer_src/gmix_model.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/gamma.ml > pplacer_src/gamma.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/parse_stats.ml > pplacer_src/parse_stats.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/prefs.ml > pplacer_src/prefs.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/subcommand.ml > common_src/subcommand.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/batchfile.ml > common_src/batchfile.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/batchfile.cmo common_src/batchfile.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/subcommand.cmo common_src/subcommand.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/subcommand.cmo common_src/subcommand.ml File "common_src/subcommand.ml", line 201, characters 52-65: 201 | (fun x -> f.value := Some (fv ~default:[] f @ String.nsplit x delimiter))) ^^^^^^^^^^^^^ Alert deprecated: Ppatteries.String.nsplit Use split_on_string instead. ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/prefs.cmo pplacer_src/prefs.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/gamma.cmo pplacer_src/gamma.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/parse_stats.cmo pplacer_src/parse_stats.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/placerun.ml > pplacer_src/placerun.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/tax_classify.ml > pplacer_src/tax_classify.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/placerun.cmo pplacer_src/placerun.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/tax_map.ml > pplacer_src/tax_map.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/tax_seqinfo.ml > pplacer_src/tax_seqinfo.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/tax_taxonomy.ml > pplacer_src/tax_taxonomy.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/tax_seqinfo.cmo pplacer_src/tax_seqinfo.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/tax_seqinfo.cmo pplacer_src/tax_seqinfo.ml File "pplacer_src/tax_seqinfo.ml", line 53, characters 16-27: 53 | | Failure "check_add" -> ^^^^^^^^^^^ Warning 52: Code should not depend on the actual values of this constructor's arguments. They are only for information and may change in future versions. (See manual section 9.5) ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/tax_taxonomy.cmo pplacer_src/tax_taxonomy.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/decor_gtree.cmo pplacer_src/decor_gtree.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/delayed.cmo common_src/delayed.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/gcat_model.cmo pplacer_src/gcat_model.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/gmix_model.cmo pplacer_src/gmix_model.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/tax_classify.cmo pplacer_src/tax_classify.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/tax_map.cmo pplacer_src/tax_map.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/refpkg.cmo pplacer_src/refpkg.ml ocamlfind ocamlc -c -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/convex.cmi pplacer_src/convex.mli ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/edge_painting.cmo pplacer_src/edge_painting.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/core.ml > pplacer_src/core.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/fig.mli > pplacer_src/fig.mli.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/minimization.ml > pplacer_src/minimization.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/three_tax.ml > pplacer_src/three_tax.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/integration.ml > pplacer_src/integration.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/minimization.cmo pplacer_src/minimization.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/integration.cmo pplacer_src/integration.ml ocamlfind ocamlc -c -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/fig.cmi pplacer_src/fig.mli ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/three_tax.cmo pplacer_src/three_tax.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/fantasy.ml > pplacer_src/fantasy.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/string_matrix.ml > pplacer_src/string_matrix.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/string_matrix.cmo pplacer_src/string_matrix.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/map_seq.ml > pplacer_src/map_seq.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/seq_post.ml > pplacer_src/seq_post.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/seq_post.cmo pplacer_src/seq_post.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/multiprocessing.mli > pplacer_src/multiprocessing.mli.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/phyloxml.ml > pplacer_src/phyloxml.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/placerun_io.ml > pplacer_src/placerun_io.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/biom.ml > pplacer_src/biom.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/version.ml > common_src/version.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/biom.cmo pplacer_src/biom.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/version.cmo common_src/version.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/seq_group.ml > pplacer_src/seq_group.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/classif_map.cmo pplacer_src/classif_map.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/core.cmo pplacer_src/core.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/fantasy.cmo pplacer_src/fantasy.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/map_seq.cmo pplacer_src/map_seq.ml ocamlfind ocamlc -c -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/multiprocessing.cmi pplacer_src/multiprocessing.mli ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/phyloxml.cmo pplacer_src/phyloxml.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/placerun_io.cmo pplacer_src/placerun_io.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/seq_group.cmo pplacer_src/seq_group.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/pplacer_run.cmo pplacer_src/pplacer_run.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/pplacer.cmo pplacer_src/pplacer.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/ppr.cmx common_src/ppr.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/mapsSets.cmx common_src/mapsSets.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/number.cmx common_src/number.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/algMap.cmx common_src/algMap.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/ppatteries.cmx common_src/ppatteries.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules json_src/jsonparse.ml > json_src/jsonparse.ml.depends ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I json_src -I cdd_src -I common_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o json_src/jsontype.cmx json_src/jsontype.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I json_src -I cdd_src -I common_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o json_src/jsonparse.cmx json_src/jsonparse.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I json_src -I cdd_src -I common_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o json_src/jsonlex.cmx json_src/jsonlex.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I json_src -I cdd_src -I common_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o json_src/json.cmx json_src/json.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/simple_json.cmx pplacer_src/simple_json.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/refpkg_parse.cmx pplacer_src/refpkg_parse.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/linear_utils.cmx common_src/linear_utils.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/fasta.cmx pplacer_src/fasta.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/nuc_models.cmx pplacer_src/nuc_models.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/prot_models.cmx pplacer_src/prot_models.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/stockholm.cmx pplacer_src/stockholm.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/check.cmx pplacer_src/check.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/convex.ml > pplacer_src/convex.ml.depends ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/myxml.cmx pplacer_src/myxml.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/newick_bark.cmx pplacer_src/newick_bark.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/bark_map.cmx pplacer_src/bark_map.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/stree.cmx pplacer_src/stree.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/stree.cmx pplacer_src/stree.ml File "pplacer_src/stree.ml", line 35, characters 12-16: 35 | | Failure "tl" -> invalid_arg "nonroot_node_ids" ^^^^ Warning 52: Code should not depend on the actual values of this constructor's arguments. They are only for information and may change in future versions. (See manual section 9.5) ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/alignment.cmx common_src/alignment.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/sql.cmx common_src/sql.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/tax_id.cmx pplacer_src/tax_id.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/decor.cmx pplacer_src/decor.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/gtree.cmx pplacer_src/gtree.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/newick_parser.ml > pplacer_src/newick_parser.ml.depends ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/newick_parse_state.cmx pplacer_src/newick_parse_state.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/newick_parser.cmx pplacer_src/newick_parser.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/placement.cmx pplacer_src/placement.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/pquery.cmx pplacer_src/pquery.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/file_parsing.cmx common_src/file_parsing.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/newick_lexer.cmx pplacer_src/newick_lexer.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/pquery_io.cmx pplacer_src/pquery_io.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/decor_bark.cmx pplacer_src/decor_bark.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/newick_gtree.cmx pplacer_src/newick_gtree.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/matrix.ml > pplacer_src/matrix.ml.depends ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/matrix.cmx pplacer_src/matrix.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/tensor.cmx pplacer_src/tensor.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/linear.cmx pplacer_src/linear.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/glvm.cmx pplacer_src/glvm.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/glv_arr.cmx pplacer_src/glv_arr.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/diagd.cmx pplacer_src/diagd.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/glv_edge.cmx pplacer_src/glv_edge.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/gstar_support.cmx pplacer_src/gstar_support.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/like_stree.cmx pplacer_src/like_stree.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/batchfile.cmx common_src/batchfile.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/subcommand.cmx common_src/subcommand.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/subcommand.cmx common_src/subcommand.ml File "common_src/subcommand.ml", line 201, characters 52-65: 201 | (fun x -> f.value := Some (fv ~default:[] f @ String.nsplit x delimiter))) ^^^^^^^^^^^^^ Alert deprecated: Ppatteries.String.nsplit Use split_on_string instead. ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/prefs.cmx pplacer_src/prefs.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/gamma.cmx pplacer_src/gamma.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/parse_stats.cmx pplacer_src/parse_stats.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/placerun.cmx pplacer_src/placerun.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/tax_seqinfo.cmx pplacer_src/tax_seqinfo.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/tax_seqinfo.cmx pplacer_src/tax_seqinfo.ml File "pplacer_src/tax_seqinfo.ml", line 53, characters 16-27: 53 | | Failure "check_add" -> ^^^^^^^^^^^ Warning 52: Code should not depend on the actual values of this constructor's arguments. They are only for information and may change in future versions. (See manual section 9.5) ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/tax_taxonomy.cmx pplacer_src/tax_taxonomy.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/decor_gtree.cmx pplacer_src/decor_gtree.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/delayed.cmx common_src/delayed.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/gcat_model.cmx pplacer_src/gcat_model.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/gmix_model.cmx pplacer_src/gmix_model.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/tax_classify.cmx pplacer_src/tax_classify.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/tax_map.cmx pplacer_src/tax_map.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/refpkg.cmx pplacer_src/refpkg.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/convex.cmx pplacer_src/convex.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/edge_painting.cmx pplacer_src/edge_painting.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/fig.ml > pplacer_src/fig.ml.depends ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/minimization.cmx pplacer_src/minimization.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/integration.cmx pplacer_src/integration.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/fig.cmx pplacer_src/fig.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/three_tax.cmx pplacer_src/three_tax.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/string_matrix.cmx pplacer_src/string_matrix.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/seq_post.cmx pplacer_src/seq_post.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/multiprocessing.ml > pplacer_src/multiprocessing.ml.depends ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/biom.cmx pplacer_src/biom.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/version.cmx common_src/version.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/classif_map.cmx pplacer_src/classif_map.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/core.cmx pplacer_src/core.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/fantasy.cmx pplacer_src/fantasy.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/map_seq.cmx pplacer_src/map_seq.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/multiprocessing.cmx pplacer_src/multiprocessing.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/phyloxml.cmx pplacer_src/phyloxml.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/placerun_io.cmx pplacer_src/placerun_io.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/seq_group.cmx pplacer_src/seq_group.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/pplacer_run.cmx pplacer_src/pplacer_run.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/pplacer.cmx pplacer_src/pplacer.ml ocamlfind ocamlopt -linkpkg -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -cclib -lpthread -cclib -limpala -cclib -lpplacercside -cclib -Lpplacer_src -cclib -lcdd -cclib -Lcdd_src -cclib -lpplacer_pam -cclib -Lpam_src -cclib -lgsl -I common_src -I json_src -I pplacer_src -I cdd_src -I pam_src common_src/ppr.cmx common_src/mapsSets.cmx common_src/number.cmx common_src/algMap.cmx common_src/ppatteries.cmx common_src/linear_utils.cmx json_src/jsontype.cmx json_src/jsonparse.cmx json_src/jsonlex.cmx json_src/json.cmx pplacer_src/simple_json.cmx pplacer_src/refpkg_parse.cmx pplacer_src/fasta.cmx pplacer_src/nuc_models.cmx pplacer_src/prot_models.cmx pplacer_src/stockholm.cmx common_src/alignment.cmx common_src/batchfile.cmx common_src/delayed.cmx common_src/file_parsing.cmx common_src/sql.cmx common_src/subcommand.cmx common_src/version.cmx pplacer_src/myxml.cmx pplacer_src/newick_bark.cmx pplacer_src/bark_map.cmx pplacer_src/stree.cmx pplacer_src/gtree.cmx pplacer_src/newick_parse_state.cmx pplacer_src/newick_parser.cmx pplacer_src/newick_lexer.cmx pplacer_src/tax_id.cmx pplacer_src/placement.cmx pplacer_src/pquery.cmx pplacer_src/pquery_io.cmx pplacer_src/newick_gtree.cmx pplacer_src/placerun.cmx pplacer_src/biom.cmx pplacer_src/check.cmx pplacer_src/decor.cmx pplacer_src/decor_bark.cmx pplacer_src/decor_gtree.cmx pplacer_src/matrix.cmx pplacer_src/tensor.cmx pplacer_src/linear.cmx pplacer_src/diagd.cmx pplacer_src/gamma.cmx pplacer_src/glvm.cmx pplacer_src/glv_arr.cmx pplacer_src/glv_edge.cmx pplacer_src/gstar_support.cmx pplacer_src/like_stree.cmx pplacer_src/gcat_model.cmx pplacer_src/prefs.cmx pplacer_src/parse_stats.cmx pplacer_src/gmix_model.cmx pplacer_src/tax_classify.cmx pplacer_src/tax_seqinfo.cmx pplacer_src/tax_taxonomy.cmx pplacer_src/tax_map.cmx pplacer_src/refpkg.cmx pplacer_src/convex.cmx pplacer_src/edge_painting.cmx pplacer_src/classif_map.cmx pplacer_src/fig.cmx pplacer_src/integration.cmx pplacer_src/minimization.cmx pplacer_src/three_tax.cmx pplacer_src/core.cmx pplacer_src/string_matrix.cmx pplacer_src/fantasy.cmx pplacer_src/seq_post.cmx pplacer_src/map_seq.cmx pplacer_src/multiprocessing.cmx pplacer_src/phyloxml.cmx pplacer_src/placerun_io.cmx pplacer_src/seq_group.cmx pplacer_src/pplacer_run.cmx pplacer_src/pplacer.cmx cdd_src/libcdd.a pam_src/libpplacer_pam.a pplacer_src/libpplacercside.a -o pplacer_src/pplacer.native make[3]: Leaving directory '/build/pplacer-1.1~alpha19' cp `readlink pplacer.native` bin/pplacer rm pplacer.native if [ ! -e bin ]; then mkdir bin; fi make guppy.native make[3]: Entering directory '/build/pplacer-1.1~alpha19' ocamlbuild guppy.native /bin/sh: 1: git: not found File "_tags", line 8, characters 154-161: Warning: the tag "pkg_str" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. File "_tags", line 8, characters 112-124: Warning: the tag "pkg_bigarray" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. File "_tags", line 8, characters 102-110: Warning: the tag "pkg_unix" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy.ml > pplacer_src/guppy.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_commands.ml > pplacer_src/guppy_commands.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_adcl.ml > pplacer_src/guppy_adcl.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_cmdobjs.ml > pplacer_src/guppy_cmdobjs.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/mass_map.ml > pplacer_src/mass_map.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/mokaphy_common.ml > pplacer_src/mokaphy_common.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/tax_mass.ml > pplacer_src/tax_mass.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/mass_map.cmo pplacer_src/mass_map.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/uptri.ml > common_src/uptri.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/tax_mass.cmo pplacer_src/tax_mass.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/uptri.cmo common_src/uptri.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/visualization.ml > pplacer_src/visualization.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/voronoi.mli > pplacer_src/voronoi.mli.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/mokaphy_common.cmo pplacer_src/mokaphy_common.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/visualization.cmo pplacer_src/visualization.ml ocamlfind ocamlc -c -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/voronoi.cmi pplacer_src/voronoi.mli ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_cmdobjs.cmo pplacer_src/guppy_cmdobjs.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_bary.ml > pplacer_src/guppy_bary.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/barycenter.ml > pplacer_src/barycenter.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/kr_distance.ml > pplacer_src/kr_distance.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/kr_distance.cmo pplacer_src/kr_distance.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/barycenter.cmo pplacer_src/barycenter.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_check.ml > pplacer_src/guppy_check.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_classify.ml > pplacer_src/guppy_classify.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/bayes_factor.ml > pplacer_src/bayes_factor.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_to_rdp.ml > pplacer_src/guppy_to_rdp.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/nbc.mli > pplacer_src/nbc.mli.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/bayes_factor.cmo pplacer_src/bayes_factor.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_to_rdp.cmo pplacer_src/guppy_to_rdp.ml ocamlfind ocamlc -c -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/nbc.cmi pplacer_src/nbc.mli ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_compress.ml > pplacer_src/guppy_compress.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_mcl.ml > pplacer_src/guppy_mcl.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/mass_overlap.ml > pplacer_src/mass_overlap.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/mass_overlap.cmo pplacer_src/mass_overlap.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/mass_compress.ml > pplacer_src/mass_compress.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/mass_islands.ml > pplacer_src/mass_islands.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_mcl.cmo pplacer_src/guppy_mcl.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/mass_compress.cmo pplacer_src/mass_compress.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/mass_islands.cmo pplacer_src/mass_islands.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_demulti.ml > pplacer_src/guppy_demulti.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_distmat.ml > pplacer_src/guppy_distmat.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/edge_rdist.ml > pplacer_src/edge_rdist.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/edge_rdist.cmo pplacer_src/edge_rdist.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_edpl.ml > pplacer_src/guppy_edpl.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/edpl.ml > pplacer_src/edpl.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/edpl.cmo pplacer_src/edpl.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_epca.ml > pplacer_src/guppy_epca.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_pca.ml > pplacer_src/guppy_pca.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_splitify.ml > pplacer_src/guppy_splitify.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_splitify.cmo pplacer_src/guppy_splitify.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/pca.ml > pplacer_src/pca.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/power_iteration.ml > common_src/power_iteration.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/power_iteration.cmo common_src/power_iteration.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/som.ml > pplacer_src/som.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/pca.cmo pplacer_src/pca.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_pca.cmo pplacer_src/guppy_pca.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/som.cmo pplacer_src/som.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_error.ml > pplacer_src/guppy_error.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_fat.ml > pplacer_src/guppy_fat.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/tax_gtree.ml > pplacer_src/tax_gtree.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/tax_gtree.cmo pplacer_src/tax_gtree.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_filter.ml > pplacer_src/guppy_filter.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_classify.cmo pplacer_src/guppy_classify.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_classify.cmo pplacer_src/guppy_classify.ml File "pplacer_src/guppy_classify.ml", line 683, characters 20-33: 683 | let splut = String.nsplit line "\t" |> Array.of_list in ^^^^^^^^^^^^^ Alert deprecated: Ppatteries.String.nsplit Use split_on_string instead. ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_fpd.ml > pplacer_src/guppy_fpd.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_heat.ml > pplacer_src/guppy_heat.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_indep_c.ml > pplacer_src/guppy_indep_c.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/indep_contrasts.ml > pplacer_src/indep_contrasts.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/indep_contrasts.cmo pplacer_src/indep_contrasts.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_info.ml > pplacer_src/guppy_info.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_islands.ml > pplacer_src/guppy_islands.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_kr.ml > pplacer_src/guppy_kr.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/gaussian_approx.ml > pplacer_src/gaussian_approx.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/r_plots.ml > pplacer_src/r_plots.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/gaussian_approx.cmo pplacer_src/gaussian_approx.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/r_plots.cmo pplacer_src/r_plots.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_kr_heat.ml > pplacer_src/guppy_kr_heat.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_lpca.ml > pplacer_src/guppy_lpca.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/lpca.ml > pplacer_src/lpca.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/lpca.cmo pplacer_src/lpca.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_merge.ml > pplacer_src/guppy_merge.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_mft.ml > pplacer_src/guppy_mft.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_ograph.ml > pplacer_src/guppy_ograph.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_placemat.ml > pplacer_src/guppy_placemat.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_pmlpca.ml > pplacer_src/guppy_pmlpca.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_rarefact.ml > pplacer_src/guppy_rarefact.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rarefaction.ml > pplacer_src/rarefaction.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rarefaction.cmo pplacer_src/rarefaction.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_rarefy.ml > pplacer_src/guppy_rarefy.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_redup.ml > pplacer_src/guppy_redup.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_round.ml > pplacer_src/guppy_round.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_sing.ml > pplacer_src/guppy_sing.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_squash.ml > pplacer_src/guppy_squash.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/bootstrap.ml > pplacer_src/bootstrap.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_round.cmo pplacer_src/guppy_round.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/squashfunc.ml > pplacer_src/squashfunc.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/bootstrap.cmo pplacer_src/bootstrap.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/squashfunc.cmo pplacer_src/squashfunc.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_to_csv.ml > pplacer_src/guppy_to_csv.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_to_json.ml > pplacer_src/guppy_to_json.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_tog.ml > pplacer_src/guppy_tog.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_trim.ml > pplacer_src/guppy_trim.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_unifrac.ml > pplacer_src/guppy_unifrac.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_adcl.cmo pplacer_src/guppy_adcl.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_bary.cmo pplacer_src/guppy_bary.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_check.cmo pplacer_src/guppy_check.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_compress.cmo pplacer_src/guppy_compress.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_demulti.cmo pplacer_src/guppy_demulti.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_distmat.cmo pplacer_src/guppy_distmat.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_edpl.cmo pplacer_src/guppy_edpl.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_epca.cmo pplacer_src/guppy_epca.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_error.cmo pplacer_src/guppy_error.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_fat.cmo pplacer_src/guppy_fat.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_filter.cmo pplacer_src/guppy_filter.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_fpd.cmo pplacer_src/guppy_fpd.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_heat.cmo pplacer_src/guppy_heat.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_indep_c.cmo pplacer_src/guppy_indep_c.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_info.cmo pplacer_src/guppy_info.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_islands.cmo pplacer_src/guppy_islands.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_kr.cmo pplacer_src/guppy_kr.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_kr_heat.cmo pplacer_src/guppy_kr_heat.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_lpca.cmo pplacer_src/guppy_lpca.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_merge.cmo pplacer_src/guppy_merge.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_mft.cmo pplacer_src/guppy_mft.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_ograph.cmo pplacer_src/guppy_ograph.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_placemat.cmo pplacer_src/guppy_placemat.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_pmlpca.cmo pplacer_src/guppy_pmlpca.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_rarefact.cmo pplacer_src/guppy_rarefact.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_rarefy.cmo pplacer_src/guppy_rarefy.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_redup.cmo pplacer_src/guppy_redup.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_sing.cmo pplacer_src/guppy_sing.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_squash.cmo pplacer_src/guppy_squash.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_to_csv.cmo pplacer_src/guppy_to_csv.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_to_json.cmo pplacer_src/guppy_to_json.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_tog.cmo pplacer_src/guppy_tog.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_trim.cmo pplacer_src/guppy_trim.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_unifrac.cmo pplacer_src/guppy_unifrac.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_commands.cmo pplacer_src/guppy_commands.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy.cmo pplacer_src/guppy.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/mass_map.cmx pplacer_src/mass_map.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/tax_mass.cmx pplacer_src/tax_mass.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/uptri.cmx common_src/uptri.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/voronoi.ml > pplacer_src/voronoi.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules cdd_src/cdd.ml > cdd_src/cdd.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o cdd_src/cdd.cmo cdd_src/cdd.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pam_src/pam_solver.ml > pam_src/pam_solver.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pam_src -I cdd_src -I common_src -I json_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pam_src/pam_solver.cmo pam_src/pam_solver.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/edge_rdist.cmx pplacer_src/edge_rdist.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o cdd_src/cdd.cmx cdd_src/cdd.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/kr_distance.cmx pplacer_src/kr_distance.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pam_src -I cdd_src -I common_src -I json_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pam_src/pam_solver.cmx pam_src/pam_solver.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/mokaphy_common.cmx pplacer_src/mokaphy_common.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/visualization.cmx pplacer_src/visualization.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/voronoi.cmx pplacer_src/voronoi.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_cmdobjs.cmx pplacer_src/guppy_cmdobjs.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/barycenter.cmx pplacer_src/barycenter.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/nbc.ml > pplacer_src/nbc.ml.depends ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/bayes_factor.cmx pplacer_src/bayes_factor.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_to_rdp.cmx pplacer_src/guppy_to_rdp.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/nbc.cmx pplacer_src/nbc.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/mass_overlap.cmx pplacer_src/mass_overlap.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_mcl.cmx pplacer_src/guppy_mcl.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/mass_compress.cmx pplacer_src/mass_compress.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/mass_islands.cmx pplacer_src/mass_islands.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/edpl.cmx pplacer_src/edpl.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_splitify.cmx pplacer_src/guppy_splitify.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I cdd_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o common_src/power_iteration.cmx common_src/power_iteration.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/pca.cmx pplacer_src/pca.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_pca.cmx pplacer_src/guppy_pca.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/som.cmx pplacer_src/som.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/tax_gtree.cmx pplacer_src/tax_gtree.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_classify.cmx pplacer_src/guppy_classify.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_classify.cmx pplacer_src/guppy_classify.ml File "pplacer_src/guppy_classify.ml", line 683, characters 20-33: 683 | let splut = String.nsplit line "\t" |> Array.of_list in ^^^^^^^^^^^^^ Alert deprecated: Ppatteries.String.nsplit Use split_on_string instead. ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/indep_contrasts.cmx pplacer_src/indep_contrasts.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/gaussian_approx.cmx pplacer_src/gaussian_approx.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/r_plots.cmx pplacer_src/r_plots.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/lpca.cmx pplacer_src/lpca.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rarefaction.cmx pplacer_src/rarefaction.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_round.cmx pplacer_src/guppy_round.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/bootstrap.cmx pplacer_src/bootstrap.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/squashfunc.cmx pplacer_src/squashfunc.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_adcl.cmx pplacer_src/guppy_adcl.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_bary.cmx pplacer_src/guppy_bary.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_check.cmx pplacer_src/guppy_check.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_compress.cmx pplacer_src/guppy_compress.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_demulti.cmx pplacer_src/guppy_demulti.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_distmat.cmx pplacer_src/guppy_distmat.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_edpl.cmx pplacer_src/guppy_edpl.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_epca.cmx pplacer_src/guppy_epca.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_error.cmx pplacer_src/guppy_error.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_fat.cmx pplacer_src/guppy_fat.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_filter.cmx pplacer_src/guppy_filter.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_fpd.cmx pplacer_src/guppy_fpd.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_heat.cmx pplacer_src/guppy_heat.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_indep_c.cmx pplacer_src/guppy_indep_c.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_info.cmx pplacer_src/guppy_info.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_islands.cmx pplacer_src/guppy_islands.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_kr.cmx pplacer_src/guppy_kr.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_kr_heat.cmx pplacer_src/guppy_kr_heat.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_lpca.cmx pplacer_src/guppy_lpca.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_merge.cmx pplacer_src/guppy_merge.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_mft.cmx pplacer_src/guppy_mft.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_ograph.cmx pplacer_src/guppy_ograph.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_placemat.cmx pplacer_src/guppy_placemat.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_pmlpca.cmx pplacer_src/guppy_pmlpca.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_rarefact.cmx pplacer_src/guppy_rarefact.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_rarefy.cmx pplacer_src/guppy_rarefy.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_redup.cmx pplacer_src/guppy_redup.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_sing.cmx pplacer_src/guppy_sing.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_squash.cmx pplacer_src/guppy_squash.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_to_csv.cmx pplacer_src/guppy_to_csv.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_to_json.cmx pplacer_src/guppy_to_json.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_tog.cmx pplacer_src/guppy_tog.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_trim.cmx pplacer_src/guppy_trim.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_unifrac.cmx pplacer_src/guppy_unifrac.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy_commands.cmx pplacer_src/guppy_commands.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/guppy.cmx pplacer_src/guppy.ml ocamlfind ocamlopt -linkpkg -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -cclib -lpthread -cclib -limpala -cclib -lpplacercside -cclib -Lpplacer_src -cclib -lcdd -cclib -Lcdd_src -cclib -lpplacer_pam -cclib -Lpam_src -cclib -lgsl -I cdd_src -I common_src -I json_src -I pplacer_src -I pam_src cdd_src/cdd.cmx common_src/ppr.cmx common_src/mapsSets.cmx common_src/number.cmx common_src/algMap.cmx common_src/ppatteries.cmx common_src/linear_utils.cmx json_src/jsontype.cmx json_src/jsonparse.cmx json_src/jsonlex.cmx json_src/json.cmx pplacer_src/simple_json.cmx pplacer_src/refpkg_parse.cmx pplacer_src/fasta.cmx pplacer_src/nuc_models.cmx pplacer_src/prot_models.cmx pplacer_src/stockholm.cmx common_src/alignment.cmx common_src/batchfile.cmx common_src/delayed.cmx common_src/file_parsing.cmx common_src/power_iteration.cmx common_src/sql.cmx common_src/subcommand.cmx common_src/uptri.cmx common_src/version.cmx pplacer_src/myxml.cmx pplacer_src/newick_bark.cmx pplacer_src/bark_map.cmx pplacer_src/stree.cmx pplacer_src/gtree.cmx pplacer_src/edge_rdist.cmx pplacer_src/newick_parse_state.cmx pplacer_src/newick_parser.cmx pplacer_src/newick_lexer.cmx pplacer_src/tax_id.cmx pplacer_src/placement.cmx pplacer_src/pquery.cmx pplacer_src/pquery_io.cmx pplacer_src/newick_gtree.cmx pplacer_src/placerun.cmx pplacer_src/mass_map.cmx pplacer_src/matrix.cmx pam_src/pam_solver.cmx pplacer_src/kr_distance.cmx pplacer_src/barycenter.cmx pplacer_src/decor.cmx pplacer_src/decor_bark.cmx pplacer_src/decor_gtree.cmx pplacer_src/tensor.cmx pplacer_src/linear.cmx pplacer_src/diagd.cmx pplacer_src/gamma.cmx pplacer_src/glvm.cmx pplacer_src/glv_arr.cmx pplacer_src/glv_edge.cmx pplacer_src/gstar_support.cmx pplacer_src/like_stree.cmx pplacer_src/gcat_model.cmx pplacer_src/prefs.cmx pplacer_src/parse_stats.cmx pplacer_src/gmix_model.cmx pplacer_src/tax_classify.cmx pplacer_src/tax_seqinfo.cmx pplacer_src/tax_taxonomy.cmx pplacer_src/tax_map.cmx pplacer_src/refpkg.cmx pplacer_src/convex.cmx pplacer_src/edge_painting.cmx pplacer_src/classif_map.cmx pplacer_src/bayes_factor.cmx pplacer_src/biom.cmx pplacer_src/bootstrap.cmx pplacer_src/check.cmx pplacer_src/fig.cmx pplacer_src/integration.cmx pplacer_src/minimization.cmx pplacer_src/three_tax.cmx pplacer_src/core.cmx pplacer_src/edpl.cmx pplacer_src/string_matrix.cmx pplacer_src/fantasy.cmx pplacer_src/gaussian_approx.cmx pplacer_src/tax_mass.cmx pplacer_src/mokaphy_common.cmx pplacer_src/phyloxml.cmx pplacer_src/placerun_io.cmx pplacer_src/visualization.cmx pplacer_src/voronoi.cmx pplacer_src/guppy_cmdobjs.cmx pplacer_src/guppy_adcl.cmx pplacer_src/guppy_bary.cmx pplacer_src/guppy_check.cmx pplacer_src/guppy_to_rdp.cmx pplacer_src/seq_post.cmx pplacer_src/map_seq.cmx pplacer_src/multiprocessing.cmx pplacer_src/nbc.cmx pplacer_src/seq_group.cmx pplacer_src/pplacer_run.cmx pplacer_src/guppy_classify.cmx pplacer_src/mass_overlap.cmx pplacer_src/guppy_mcl.cmx pplacer_src/mass_compress.cmx pplacer_src/mass_islands.cmx pplacer_src/guppy_compress.cmx pplacer_src/guppy_demulti.cmx pplacer_src/guppy_distmat.cmx pplacer_src/guppy_edpl.cmx pplacer_src/guppy_splitify.cmx pplacer_src/guppy_pca.cmx pplacer_src/pca.cmx pplacer_src/som.cmx pplacer_src/guppy_epca.cmx pplacer_src/guppy_error.cmx pplacer_src/tax_gtree.cmx pplacer_src/guppy_fat.cmx pplacer_src/guppy_filter.cmx pplacer_src/guppy_fpd.cmx pplacer_src/guppy_heat.cmx pplacer_src/indep_contrasts.cmx pplacer_src/guppy_indep_c.cmx pplacer_src/guppy_info.cmx pplacer_src/guppy_islands.cmx pplacer_src/r_plots.cmx pplacer_src/guppy_kr.cmx pplacer_src/guppy_kr_heat.cmx pplacer_src/lpca.cmx pplacer_src/guppy_lpca.cmx pplacer_src/guppy_merge.cmx pplacer_src/guppy_mft.cmx pplacer_src/guppy_ograph.cmx pplacer_src/guppy_placemat.cmx pplacer_src/guppy_pmlpca.cmx pplacer_src/rarefaction.cmx pplacer_src/guppy_rarefact.cmx pplacer_src/guppy_rarefy.cmx pplacer_src/guppy_redup.cmx pplacer_src/guppy_round.cmx pplacer_src/guppy_sing.cmx pplacer_src/squashfunc.cmx pplacer_src/guppy_squash.cmx pplacer_src/guppy_to_csv.cmx pplacer_src/guppy_to_json.cmx pplacer_src/guppy_tog.cmx pplacer_src/guppy_trim.cmx pplacer_src/guppy_unifrac.cmx pplacer_src/guppy_commands.cmx pplacer_src/guppy.cmx cdd_src/libcdd.a pam_src/libpplacer_pam.a pplacer_src/libpplacercside.a -o pplacer_src/guppy.native make[3]: Leaving directory '/build/pplacer-1.1~alpha19' cp `readlink guppy.native` bin/guppy rm guppy.native if [ ! -e bin ]; then mkdir bin; fi make rppr.native make[3]: Entering directory '/build/pplacer-1.1~alpha19' ocamlbuild rppr.native /bin/sh: 1: git: not found File "_tags", line 8, characters 154-161: Warning: the tag "pkg_str" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. File "_tags", line 8, characters 112-124: Warning: the tag "pkg_bigarray" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. File "_tags", line 8, characters 102-110: Warning: the tag "pkg_unix" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr.ml > pplacer_src/rppr.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_commands.ml > pplacer_src/rppr_commands.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_check.ml > pplacer_src/rppr_check.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_convex_taxids.ml > pplacer_src/rppr_convex_taxids.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_convexify.ml > pplacer_src/rppr_convexify.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_infer.ml > pplacer_src/rppr_infer.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_info.ml > pplacer_src/rppr_info.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_min_adcl.ml > pplacer_src/rppr_min_adcl.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_min_adcl_tree.ml > pplacer_src/rppr_min_adcl_tree.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pdprune_src/rppr_pdprune.ml > pdprune_src/rppr_pdprune.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pdprune_src/pd.ml > pdprune_src/pd.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pdprune_src/ptree.ml > pdprune_src/ptree.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pdprune_src -I cdd_src -I common_src -I json_src -I pam_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pdprune_src/ptree.cmo pdprune_src/ptree.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pdprune_src -I cdd_src -I common_src -I json_src -I pam_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pdprune_src/pd.cmo pdprune_src/pd.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_prep_db.ml > pplacer_src/rppr_prep_db.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_prepsim.ml > pplacer_src/rppr_prepsim.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_reclass.ml > pplacer_src/rppr_reclass.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rppr_infer.cmo pplacer_src/rppr_infer.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_ref_tree.ml > pplacer_src/rppr_ref_tree.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_reroot.ml > pplacer_src/rppr_reroot.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rppr_check.cmo pplacer_src/rppr_check.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rppr_convex_taxids.cmo pplacer_src/rppr_convex_taxids.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rppr_convexify.cmo pplacer_src/rppr_convexify.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rppr_info.cmo pplacer_src/rppr_info.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rppr_min_adcl.cmo pplacer_src/rppr_min_adcl.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rppr_min_adcl_tree.cmo pplacer_src/rppr_min_adcl_tree.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pdprune_src -I cdd_src -I common_src -I json_src -I pam_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pdprune_src/rppr_pdprune.cmo pdprune_src/rppr_pdprune.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rppr_prep_db.cmo pplacer_src/rppr_prep_db.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rppr_prepsim.cmo pplacer_src/rppr_prepsim.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rppr_reclass.cmo pplacer_src/rppr_reclass.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rppr_ref_tree.cmo pplacer_src/rppr_ref_tree.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rppr_reroot.cmo pplacer_src/rppr_reroot.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rppr_commands.cmo pplacer_src/rppr_commands.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rppr.cmo pplacer_src/rppr.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pdprune_src -I cdd_src -I common_src -I json_src -I pam_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pdprune_src/ptree.cmx pdprune_src/ptree.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pdprune_src -I cdd_src -I common_src -I json_src -I pam_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pdprune_src/pd.cmx pdprune_src/pd.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rppr_infer.cmx pplacer_src/rppr_infer.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rppr_check.cmx pplacer_src/rppr_check.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rppr_convex_taxids.cmx pplacer_src/rppr_convex_taxids.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rppr_convexify.cmx pplacer_src/rppr_convexify.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rppr_info.cmx pplacer_src/rppr_info.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rppr_min_adcl.cmx pplacer_src/rppr_min_adcl.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rppr_min_adcl_tree.cmx pplacer_src/rppr_min_adcl_tree.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pdprune_src -I cdd_src -I common_src -I json_src -I pam_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pdprune_src/rppr_pdprune.cmx pdprune_src/rppr_pdprune.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rppr_prep_db.cmx pplacer_src/rppr_prep_db.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rppr_prepsim.cmx pplacer_src/rppr_prepsim.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rppr_reclass.cmx pplacer_src/rppr_reclass.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rppr_ref_tree.cmx pplacer_src/rppr_ref_tree.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rppr_reroot.cmx pplacer_src/rppr_reroot.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rppr_commands.cmx pplacer_src/rppr_commands.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/rppr.cmx pplacer_src/rppr.ml ocamlfind ocamlopt -linkpkg -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -cclib -lpthread -cclib -limpala -cclib -lpplacercside -cclib -Lpplacer_src -cclib -lcdd -cclib -Lcdd_src -cclib -lpplacer_pam -cclib -Lpam_src -cclib -lgsl -I cdd_src -I common_src -I json_src -I pplacer_src -I pam_src -I pdprune_src cdd_src/cdd.cmx common_src/ppr.cmx common_src/mapsSets.cmx common_src/number.cmx common_src/algMap.cmx common_src/ppatteries.cmx common_src/linear_utils.cmx json_src/jsontype.cmx json_src/jsonparse.cmx json_src/jsonlex.cmx json_src/json.cmx pplacer_src/simple_json.cmx pplacer_src/refpkg_parse.cmx pplacer_src/fasta.cmx pplacer_src/nuc_models.cmx pplacer_src/prot_models.cmx pplacer_src/stockholm.cmx common_src/alignment.cmx common_src/batchfile.cmx common_src/delayed.cmx common_src/file_parsing.cmx common_src/sql.cmx common_src/subcommand.cmx common_src/uptri.cmx common_src/version.cmx pplacer_src/myxml.cmx pplacer_src/newick_bark.cmx pplacer_src/bark_map.cmx pplacer_src/stree.cmx pplacer_src/gtree.cmx pplacer_src/edge_rdist.cmx pplacer_src/newick_parse_state.cmx pplacer_src/newick_parser.cmx pplacer_src/newick_lexer.cmx pplacer_src/tax_id.cmx pplacer_src/placement.cmx pplacer_src/pquery.cmx pplacer_src/pquery_io.cmx pplacer_src/newick_gtree.cmx pplacer_src/placerun.cmx pplacer_src/mass_map.cmx pplacer_src/matrix.cmx pam_src/pam_solver.cmx pdprune_src/ptree.cmx pdprune_src/pd.cmx pplacer_src/biom.cmx pplacer_src/decor.cmx pplacer_src/decor_bark.cmx pplacer_src/decor_gtree.cmx pplacer_src/tensor.cmx pplacer_src/linear.cmx pplacer_src/diagd.cmx pplacer_src/gamma.cmx pplacer_src/glvm.cmx pplacer_src/glv_arr.cmx pplacer_src/glv_edge.cmx pplacer_src/gstar_support.cmx pplacer_src/like_stree.cmx pplacer_src/gcat_model.cmx pplacer_src/prefs.cmx pplacer_src/parse_stats.cmx pplacer_src/gmix_model.cmx pplacer_src/kr_distance.cmx pplacer_src/string_matrix.cmx pplacer_src/tax_mass.cmx pplacer_src/mokaphy_common.cmx pplacer_src/phyloxml.cmx pplacer_src/placerun_io.cmx pplacer_src/tax_classify.cmx pplacer_src/tax_seqinfo.cmx pplacer_src/tax_taxonomy.cmx pplacer_src/tax_map.cmx pplacer_src/refpkg.cmx pplacer_src/visualization.cmx pplacer_src/voronoi.cmx pplacer_src/guppy_cmdobjs.cmx pdprune_src/rppr_pdprune.cmx pplacer_src/check.cmx pplacer_src/convex.cmx pplacer_src/edge_painting.cmx pplacer_src/classif_map.cmx pplacer_src/fig.cmx pplacer_src/integration.cmx pplacer_src/minimization.cmx pplacer_src/three_tax.cmx pplacer_src/core.cmx pplacer_src/fantasy.cmx pplacer_src/seq_post.cmx pplacer_src/map_seq.cmx pplacer_src/multiprocessing.cmx pplacer_src/seq_group.cmx pplacer_src/pplacer_run.cmx pplacer_src/rppr_check.cmx pplacer_src/rppr_convex_taxids.cmx pplacer_src/rppr_convexify.cmx pplacer_src/rppr_infer.cmx pplacer_src/rppr_info.cmx pplacer_src/rppr_min_adcl.cmx pplacer_src/rppr_min_adcl_tree.cmx pplacer_src/rppr_prep_db.cmx pplacer_src/rppr_prepsim.cmx pplacer_src/rppr_reclass.cmx pplacer_src/tax_gtree.cmx pplacer_src/rppr_ref_tree.cmx pplacer_src/rppr_reroot.cmx pplacer_src/rppr_commands.cmx pplacer_src/rppr.cmx cdd_src/libcdd.a pam_src/libpplacer_pam.a pplacer_src/libpplacercside.a -o pplacer_src/rppr.native make[3]: Leaving directory '/build/pplacer-1.1~alpha19' cp `readlink rppr.native` bin/rppr rm rppr.native make[2]: Leaving directory '/build/pplacer-1.1~alpha19' make[1]: Leaving directory '/build/pplacer-1.1~alpha19' dh_auto_test make -j15 test make[1]: Entering directory '/build/pplacer-1.1~alpha19' ocamlbuild tests.native /bin/sh: 1: git: not found File "_tags", line 8, characters 154-161: Warning: the tag "pkg_str" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. File "_tags", line 8, characters 112-124: Warning: the tag "pkg_bigarray" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. File "_tags", line 8, characters 102-110: Warning: the tag "pkg_unix" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/tests.ml > tests/tests.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_all_guppy.ml > tests/guppy/test_all_guppy.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_compress.ml > tests/guppy/test_compress.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/test_util.ml > tests/test_util.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o tests/test_util.cmo tests/test_util.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_edge_rdist.ml > tests/guppy/test_edge_rdist.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_edpl.ml > tests/guppy/test_edpl.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_error.ml > tests/guppy/test_error.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_fpd.ml > tests/guppy/test_fpd.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_gaussian.ml > tests/guppy/test_gaussian.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_heat.ml > tests/guppy/test_heat.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_indep_contrasts.ml > tests/guppy/test_indep_contrasts.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_islands.ml > tests/guppy/test_islands.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_kr_distance.ml > tests/guppy/test_kr_distance.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/matrix_sig.ml > pplacer_src/matrix_sig.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/pquery_distances.ml > pplacer_src/pquery_distances.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/pquery_distances.cmo pplacer_src/pquery_distances.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/matrix_sig.cmo pplacer_src/matrix_sig.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_lpca.ml > tests/guppy/test_lpca.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_newick_bark.ml > tests/guppy/test_newick_bark.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_overlap.ml > tests/guppy/test_overlap.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_pca.ml > tests/guppy/test_pca.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_pd.ml > tests/guppy/test_pd.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_power_iteration.ml > tests/guppy/test_power_iteration.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_rarefact.ml > tests/guppy/test_rarefact.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_rarefy.ml > tests/guppy/test_rarefy.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_som.ml > tests/guppy/test_som.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_splitify.ml > tests/guppy/test_splitify.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_trim.ml > tests/guppy/test_trim.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_unifrac.ml > tests/guppy/test_unifrac.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_compress.cmo tests/guppy/test_compress.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_edge_rdist.cmo tests/guppy/test_edge_rdist.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_edpl.cmo tests/guppy/test_edpl.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_error.cmo tests/guppy/test_error.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_fpd.cmo tests/guppy/test_fpd.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_gaussian.cmo tests/guppy/test_gaussian.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_heat.cmo tests/guppy/test_heat.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_indep_contrasts.cmo tests/guppy/test_indep_contrasts.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_islands.cmo tests/guppy/test_islands.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_kr_distance.cmo tests/guppy/test_kr_distance.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_lpca.cmo tests/guppy/test_lpca.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_newick_bark.cmo tests/guppy/test_newick_bark.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_overlap.cmo tests/guppy/test_overlap.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_pca.cmo tests/guppy/test_pca.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_pd.cmo tests/guppy/test_pd.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_power_iteration.cmo tests/guppy/test_power_iteration.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_rarefact.cmo tests/guppy/test_rarefact.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_rarefy.cmo tests/guppy/test_rarefy.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_som.cmo tests/guppy/test_som.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_splitify.cmo tests/guppy/test_splitify.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_trim.cmo tests/guppy/test_trim.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_unifrac.cmo tests/guppy/test_unifrac.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/pplacer/test_all_pplacer.ml > tests/pplacer/test_all_pplacer.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/pplacer/test_convex.ml > tests/pplacer/test_convex.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/pplacer/test_edge_labels.ml > tests/pplacer/test_edge_labels.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/pplacer/test_exp_priors.ml > tests/pplacer/test_exp_priors.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/pplacer/test_like.ml > tests/pplacer/test_like.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/pplacer/test_linear.ml > tests/pplacer/test_linear.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/pplacer/test_matrix.ml > tests/pplacer/test_matrix.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/pplacer/test_misc.ml > tests/pplacer/test_misc.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/pplacer/test_newick_parser.ml > tests/pplacer/test_newick_parser.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/pplacer/test_painting.ml > tests/pplacer/test_painting.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/pplacer/test_placefile.ml > tests/pplacer/test_placefile.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/pplacer/test_ppatteries.ml > tests/pplacer/test_ppatteries.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/pplacer/test_rerooting.ml > tests/pplacer/test_rerooting.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/rppr -o tests/pplacer/test_convex.cmo tests/pplacer/test_convex.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/rppr -o tests/pplacer/test_edge_labels.cmo tests/pplacer/test_edge_labels.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/rppr -o tests/pplacer/test_exp_priors.cmo tests/pplacer/test_exp_priors.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/rppr -o tests/pplacer/test_like.cmo tests/pplacer/test_like.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/rppr -o tests/pplacer/test_linear.cmo tests/pplacer/test_linear.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/rppr -o tests/pplacer/test_matrix.cmo tests/pplacer/test_matrix.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/rppr -o tests/pplacer/test_misc.cmo tests/pplacer/test_misc.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/rppr -o tests/pplacer/test_newick_parser.cmo tests/pplacer/test_newick_parser.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/rppr -o tests/pplacer/test_painting.cmo tests/pplacer/test_painting.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/rppr -o tests/pplacer/test_placefile.cmo tests/pplacer/test_placefile.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/rppr -o tests/pplacer/test_ppatteries.cmo tests/pplacer/test_ppatteries.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/rppr -o tests/pplacer/test_rerooting.cmo tests/pplacer/test_rerooting.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/rppr/test_all_rppr.ml > tests/rppr/test_all_rppr.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/rppr/test_convex_taxids.ml > tests/rppr/test_convex_taxids.ml.depends ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/rppr/test_voronoi.ml > tests/rppr/test_voronoi.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/rppr -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -o tests/rppr/test_convex_taxids.cmo tests/rppr/test_convex_taxids.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/rppr -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -o tests/rppr/test_voronoi.cmo tests/rppr/test_voronoi.ml ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/json/test_json.ml > tests/json/test_json.ml.depends ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_all_guppy.cmo tests/guppy/test_all_guppy.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/rppr -o tests/pplacer/test_all_pplacer.cmo tests/pplacer/test_all_pplacer.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/rppr -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -o tests/rppr/test_all_rppr.cmo tests/rppr/test_all_rppr.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/json -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/pplacer -I tests/rppr -o tests/json/test_json.cmo tests/json/test_json.ml ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o tests/tests.cmo tests/tests.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o tests/test_util.cmx tests/test_util.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/pquery_distances.cmx pplacer_src/pquery_distances.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o pplacer_src/matrix_sig.cmx pplacer_src/matrix_sig.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_compress.cmx tests/guppy/test_compress.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_edge_rdist.cmx tests/guppy/test_edge_rdist.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_edpl.cmx tests/guppy/test_edpl.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_error.cmx tests/guppy/test_error.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_fpd.cmx tests/guppy/test_fpd.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_gaussian.cmx tests/guppy/test_gaussian.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_heat.cmx tests/guppy/test_heat.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_indep_contrasts.cmx tests/guppy/test_indep_contrasts.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_islands.cmx tests/guppy/test_islands.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_kr_distance.cmx tests/guppy/test_kr_distance.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_lpca.cmx tests/guppy/test_lpca.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_newick_bark.cmx tests/guppy/test_newick_bark.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_overlap.cmx tests/guppy/test_overlap.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_pca.cmx tests/guppy/test_pca.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_pd.cmx tests/guppy/test_pd.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_power_iteration.cmx tests/guppy/test_power_iteration.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_rarefact.cmx tests/guppy/test_rarefact.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_rarefy.cmx tests/guppy/test_rarefy.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_som.cmx tests/guppy/test_som.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_splitify.cmx tests/guppy/test_splitify.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_trim.cmx tests/guppy/test_trim.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_unifrac.cmx tests/guppy/test_unifrac.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/rppr -o tests/pplacer/test_convex.cmx tests/pplacer/test_convex.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/rppr -o tests/pplacer/test_edge_labels.cmx tests/pplacer/test_edge_labels.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/rppr -o tests/pplacer/test_exp_priors.cmx tests/pplacer/test_exp_priors.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/rppr -o tests/pplacer/test_like.cmx tests/pplacer/test_like.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/rppr -o tests/pplacer/test_linear.cmx tests/pplacer/test_linear.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/rppr -o tests/pplacer/test_matrix.cmx tests/pplacer/test_matrix.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/rppr -o tests/pplacer/test_misc.cmx tests/pplacer/test_misc.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/rppr -o tests/pplacer/test_newick_parser.cmx tests/pplacer/test_newick_parser.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/rppr -o tests/pplacer/test_painting.cmx tests/pplacer/test_painting.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/rppr -o tests/pplacer/test_placefile.cmx tests/pplacer/test_placefile.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/rppr -o tests/pplacer/test_ppatteries.cmx tests/pplacer/test_ppatteries.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/rppr -o tests/pplacer/test_rerooting.cmx tests/pplacer/test_rerooting.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/rppr -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -o tests/rppr/test_convex_taxids.cmx tests/rppr/test_convex_taxids.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/rppr -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -o tests/rppr/test_voronoi.cmx tests/rppr/test_voronoi.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/json -I tests/pplacer -I tests/rppr -o tests/guppy/test_all_guppy.cmx tests/guppy/test_all_guppy.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/rppr -o tests/pplacer/test_all_pplacer.cmx tests/pplacer/test_all_pplacer.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/rppr -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -o tests/rppr/test_all_rppr.cmx tests/rppr/test_all_rppr.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/json -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests -I tests/guppy -I tests/pplacer -I tests/rppr -o tests/json/test_json.cmx tests/json/test_json.ml ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests -I cdd_src -I common_src -I json_src -I pam_src -I pdprune_src -I pplacer_src -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr -o tests/tests.cmx tests/tests.ml ocamlfind ocamlopt -linkpkg -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -cclib -lpthread -cclib -limpala -cclib -lpplacercside -cclib -Lpplacer_src -cclib -lcdd -cclib -Lcdd_src -cclib -lpplacer_pam -cclib -Lpam_src -cclib -lgsl -I cdd_src -I common_src -I json_src -I pplacer_src -I pam_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr cdd_src/cdd.cmx common_src/ppr.cmx common_src/mapsSets.cmx common_src/number.cmx common_src/algMap.cmx common_src/ppatteries.cmx common_src/linear_utils.cmx json_src/jsontype.cmx json_src/jsonparse.cmx json_src/jsonlex.cmx json_src/json.cmx pplacer_src/simple_json.cmx pplacer_src/refpkg_parse.cmx pplacer_src/fasta.cmx pplacer_src/nuc_models.cmx pplacer_src/prot_models.cmx pplacer_src/stockholm.cmx common_src/alignment.cmx common_src/batchfile.cmx common_src/delayed.cmx common_src/file_parsing.cmx common_src/power_iteration.cmx common_src/sql.cmx common_src/subcommand.cmx common_src/uptri.cmx common_src/version.cmx pplacer_src/myxml.cmx pplacer_src/newick_bark.cmx pplacer_src/bark_map.cmx pplacer_src/stree.cmx pplacer_src/gtree.cmx pplacer_src/edge_rdist.cmx pplacer_src/newick_parse_state.cmx pplacer_src/newick_parser.cmx pplacer_src/newick_lexer.cmx pplacer_src/tax_id.cmx pplacer_src/placement.cmx pplacer_src/pquery.cmx pplacer_src/pquery_io.cmx pplacer_src/newick_gtree.cmx pplacer_src/placerun.cmx pplacer_src/mass_map.cmx pplacer_src/matrix.cmx pam_src/pam_solver.cmx pplacer_src/biom.cmx pplacer_src/decor.cmx pplacer_src/decor_bark.cmx pplacer_src/decor_gtree.cmx pplacer_src/tensor.cmx pplacer_src/linear.cmx pplacer_src/diagd.cmx pplacer_src/gamma.cmx pplacer_src/glvm.cmx pplacer_src/glv_arr.cmx pplacer_src/glv_edge.cmx pplacer_src/gstar_support.cmx pplacer_src/like_stree.cmx pplacer_src/gcat_model.cmx pplacer_src/prefs.cmx pplacer_src/parse_stats.cmx pplacer_src/gmix_model.cmx pplacer_src/tax_classify.cmx pplacer_src/tax_seqinfo.cmx pplacer_src/tax_taxonomy.cmx pplacer_src/tax_map.cmx pplacer_src/refpkg.cmx pplacer_src/convex.cmx pplacer_src/fig.cmx pplacer_src/integration.cmx pplacer_src/minimization.cmx pplacer_src/three_tax.cmx pplacer_src/core.cmx pplacer_src/edge_painting.cmx pplacer_src/edpl.cmx pplacer_src/kr_distance.cmx pplacer_src/gaussian_approx.cmx pplacer_src/string_matrix.cmx pplacer_src/tax_mass.cmx pplacer_src/mokaphy_common.cmx pplacer_src/phyloxml.cmx pplacer_src/placerun_io.cmx pplacer_src/visualization.cmx pplacer_src/voronoi.cmx pplacer_src/guppy_cmdobjs.cmx pplacer_src/guppy_error.cmx pplacer_src/guppy_fpd.cmx pplacer_src/guppy_heat.cmx pplacer_src/r_plots.cmx pplacer_src/tax_gtree.cmx pplacer_src/guppy_kr.cmx pplacer_src/guppy_rarefy.cmx pplacer_src/guppy_trim.cmx pplacer_src/guppy_unifrac.cmx pplacer_src/indep_contrasts.cmx pplacer_src/lpca.cmx pplacer_src/mass_compress.cmx pplacer_src/mass_islands.cmx pplacer_src/mass_overlap.cmx pplacer_src/pquery_distances.cmx pplacer_src/matrix_sig.cmx pplacer_src/pca.cmx pplacer_src/rarefaction.cmx pplacer_src/rppr_convex_taxids.cmx pplacer_src/som.cmx tests/test_util.cmx tests/guppy/test_compress.cmx tests/guppy/test_edge_rdist.cmx tests/guppy/test_edpl.cmx tests/guppy/test_error.cmx tests/guppy/test_fpd.cmx tests/guppy/test_gaussian.cmx tests/guppy/test_heat.cmx tests/guppy/test_indep_contrasts.cmx tests/guppy/test_islands.cmx tests/guppy/test_kr_distance.cmx tests/guppy/test_lpca.cmx tests/guppy/test_newick_bark.cmx tests/guppy/test_overlap.cmx tests/guppy/test_pca.cmx tests/guppy/test_pd.cmx tests/guppy/test_power_iteration.cmx tests/guppy/test_rarefact.cmx tests/guppy/test_rarefy.cmx tests/guppy/test_som.cmx tests/guppy/test_splitify.cmx tests/guppy/test_trim.cmx tests/guppy/test_unifrac.cmx tests/guppy/test_all_guppy.cmx tests/json/test_json.cmx tests/pplacer/test_convex.cmx tests/pplacer/test_edge_labels.cmx tests/pplacer/test_exp_priors.cmx tests/pplacer/test_like.cmx tests/pplacer/test_linear.cmx tests/pplacer/test_matrix.cmx tests/pplacer/test_misc.cmx tests/pplacer/test_newick_parser.cmx tests/pplacer/test_painting.cmx tests/pplacer/test_placefile.cmx tests/pplacer/test_ppatteries.cmx tests/pplacer/test_rerooting.cmx tests/pplacer/test_all_pplacer.cmx tests/rppr/test_convex_taxids.cmx tests/rppr/test_voronoi.cmx tests/rppr/test_all_rppr.cmx tests/tests.cmx cdd_src/libcdd.a pam_src/libpplacer_pam.a pplacer_src/libpplacercside.a -o tests/tests.native ./tests.native ................................................................................................................................................................................................................................ Ran: 224 tests in: 8.42 seconds. OK make[1]: Leaving directory '/build/pplacer-1.1~alpha19' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install dh_install dh_ocamldoc dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_ocaml dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'pplacer' in '../pplacer_1.1~alpha19-4_amd64.deb'. dpkg-deb: building package 'pplacer-dbgsym' in '../pplacer-dbgsym_1.1~alpha19-4_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../pplacer_1.1~alpha19-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1466623 and its subdirectories I: Current time: Tue Jul 25 04:39:03 -12 2023 I: pbuilder-time-stamp: 1690303143 Tue Jul 25 16:39:04 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Tue Jul 25 16:39:04 UTC 2023 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Tue Jul 25 16:41:39 UTC 2023 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Tue Jul 25 16:41:40 UTC 2023 I: pplacer_1.1~alpha19-4_amd64.changes: Format: 1.8 Date: Tue, 01 Dec 2020 19:54:07 +0530 Source: pplacer Binary: pplacer pplacer-dbgsym Architecture: amd64 Version: 1.1~alpha19-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: pplacer - phylogenetic placement and downstream analysis Closes: 975858 Changes: pplacer (1.1~alpha19-4) unstable; urgency=medium . * Team Upload. * Pull and modify upstream PR to fix FTBFS w/ new version of libocamlgsl-ocaml-dev (Closes: #975858) * Standards version: 4.5.1 Checksums-Sha1: 877d7f4e0aa674ea8864381529a5b7199341a4ef 911040 pplacer-dbgsym_1.1~alpha19-4_amd64.deb 34e975a43fefc4a45c2633b5a1c05379164143d2 6320 pplacer_1.1~alpha19-4_amd64.buildinfo 44aa8c6dd6d1bdbbbd62cf8e0f4cfccf986b7736 2931048 pplacer_1.1~alpha19-4_amd64.deb Checksums-Sha256: 5375ba62a1a033554b9d66e08f2da8ae5d2796a617514ffa3ed36a3e799d1dfa 911040 pplacer-dbgsym_1.1~alpha19-4_amd64.deb 2ccee05eb4c414dd41e508dec5cd5a63133ae8b116b8a159ba25463db6f30923 6320 pplacer_1.1~alpha19-4_amd64.buildinfo 3022892ac6b78eff425310d9ea3c4e5b5b4620e40f7c58108eca72cff3c45b23 2931048 pplacer_1.1~alpha19-4_amd64.deb Files: cfc8e2694dc87f51fb68e227f901b6a6 911040 debug optional pplacer-dbgsym_1.1~alpha19-4_amd64.deb 6fceb0a1429d6bf0c3f7b580c1cf1c45 6320 science optional pplacer_1.1~alpha19-4_amd64.buildinfo f018cb227acb6fc8a110defbf1110f3d 2931048 science optional pplacer_1.1~alpha19-4_amd64.deb Tue Jul 25 16:41:41 UTC 2023 I: diffoscope 243 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.KF9u9gIi/pplacer_1.1~alpha19-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.KF9u9gIi/pplacer_1.1~alpha19-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.KF9u9gIi/pplacer_1.1~alpha19-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.KF9u9gIi/b1/pplacer_1.1~alpha19-4_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.KF9u9gIi/b2/pplacer_1.1~alpha19-4_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.264s) 0.264s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.048s) 0.048s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Tue Jul 25 16:41:42 UTC 2023 I: diffoscope 243 found no differences in the changes files, and a .buildinfo file also exists. Tue Jul 25 16:41:42 UTC 2023 I: pplacer from bullseye built successfully and reproducibly on amd64. Tue Jul 25 16:41:42 UTC 2023 I: Submitting .buildinfo files to external archives: Tue Jul 25 16:41:43 UTC 2023 I: Submitting 8.0K b1/pplacer_1.1~alpha19-4_amd64.buildinfo.asc Tue Jul 25 16:41:44 UTC 2023 I: Submitting 8.0K b2/pplacer_1.1~alpha19-4_amd64.buildinfo.asc Tue Jul 25 16:41:45 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Jul 25 16:41:45 UTC 2023 I: Done submitting .buildinfo files. Tue Jul 25 16:41:45 UTC 2023 I: Removing signed pplacer_1.1~alpha19-4_amd64.buildinfo.asc files: removed './b1/pplacer_1.1~alpha19-4_amd64.buildinfo.asc' removed './b2/pplacer_1.1~alpha19-4_amd64.buildinfo.asc'