Mon Jan 8 21:17:19 UTC 2024 I: starting to build macs/bullseye/amd64 on jenkins on '2024-01-08 21:17' Mon Jan 8 21:17:19 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_2/12518/console.log Mon Jan 8 21:17:19 UTC 2024 I: Downloading source for bullseye/macs=2.2.7.1-3 --2024-01-08 21:17:19-- http://cdn-fastly.deb.debian.org/debian/pool/main/m/macs/macs_2.2.7.1-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2102 (2.1K) [text/prs.lines.tag] Saving to: ‘macs_2.2.7.1-3.dsc’ 0K .. 100% 333M=0s 2024-01-08 21:17:19 (333 MB/s) - ‘macs_2.2.7.1-3.dsc’ saved [2102/2102] Mon Jan 8 21:17:19 UTC 2024 I: macs_2.2.7.1-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: macs Binary: macs Architecture: any Version: 2.2.7.1-3 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Andreas Tille Homepage: https://github.com/taoliu/MACS/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/macs Vcs-Git: https://salsa.debian.org/med-team/macs.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, cython3, help2man, procps Package-List: macs deb science optional arch=any Checksums-Sha1: 403dd5bb27a43d23b047e13f1ca7b46e7260bc76 134872405 macs_2.2.7.1.orig.tar.gz 68332c8e20356ed0356364a6d105054abe97f324 1267660 macs_2.2.7.1-3.debian.tar.xz Checksums-Sha256: 8ba25c367b84e237487b01be947239bee80e3ba123afc5e6034c374413b32913 134872405 macs_2.2.7.1.orig.tar.gz ec8667e7d3c85f3de72a87238266236470dd8c04a5631ad0f75f31545f5ee6f5 1267660 macs_2.2.7.1-3.debian.tar.xz Files: 3b669e6b847e5d2edd9b9ab4b58edae9 134872405 macs_2.2.7.1.orig.tar.gz c1b0b0f58baae3f2d4cf1221dc19e46f 1267660 macs_2.2.7.1-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl8PecARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH0Lg//W9BV+5dYgxhbCdtHFfLHzUeiS4fiB7XG gcfgUkWAkJ1uJd10mCKguekUjY7n75vVGOrryQScD6UmUdP2YhPvG3KdsIUVbhwW joDbKeF0SfLT5LtyM1jNlXPsUxQ98ZOIs6xeKndDWp+SBLEzJO+Jdl3xOv2+oH00 O8W90gm4tNhTV0JWRqgFfz77AituqOSEyiTazkWD8fgsh36eDr9pq9Yo8V5ofoOq CFZ8VHubw+5T1k080CfEfQjvJDmWUZO1yTQV1l3pZyQgaY7kAzVZrrEEXfbHlMt4 WxPfNZGI+lD2JgYGBJTUP7UvEX5rJqyZ4lhY8zpSsjb2y402ZBiG9PV38LkLFa+c pxXF5GSPKOsCpcdy3iUX+QUeVLQf8YpQuqLfjBUuomsLSDEkVifPOweLVpJWn6v/ T+HewyFTHlCWiOA8wzVhSEX46d7x0qVdkI/uBg6CRzu+SaMX5924SRPUSRJhVzA+ UKYoIHdnLWsckfv3nytTGBNSixtleNLGwjE1Kzj3MUTPBd0lrmKjSJu4DqAGt09b JG+pwmw+cNK1QAoMk+GOzD7OH6KBsW7fT1BV9OlRYY944zw3pNpDBjYl6wuMvbBk rxn+Cf5M0q0w/XEw5tzNpoTvKKJuowEet2dh9XozrBu+X5AKF+Mr5Jxw0pNyK/ya Ud2TCytTlCA= =3Wug -----END PGP SIGNATURE----- Mon Jan 8 21:17:19 UTC 2024 I: Checking whether the package is not for us Mon Jan 8 21:17:19 UTC 2024 I: Starting 1st build on remote node ionos5-amd64.debian.net. Mon Jan 8 21:17:19 UTC 2024 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Mon Jan 8 21:33:51 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Feb 9 15:40:33 -12 2025 I: pbuilder-time-stamp: 1739158833 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [macs_2.2.7.1-3.dsc] I: copying [./macs_2.2.7.1.orig.tar.gz] I: copying [./macs_2.2.7.1-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.NcvQ9tPj/trustedkeys.kbx': General error gpgv: Signature made Wed Jul 15 21:48:48 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./macs_2.2.7.1-3.dsc dpkg-source: info: extracting macs in macs-2.2.7.1 dpkg-source: info: unpacking macs_2.2.7.1.orig.tar.gz dpkg-source: info: unpacking macs_2.2.7.1-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling dpkg-source: info: applying keep_debug dpkg-source: info: applying link-libm.patch dpkg-source: info: applying no-pip.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2838794/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16 ' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='5517c6f7ecd74957be882d2a07e3c335' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2838794' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yLrKs9CN/pbuilderrc_HYrU --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yLrKs9CN/b1 --logfile b1/build.log macs_2.2.7.1-3.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos5-amd64 6.5.0-0.deb12.4-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.5.10-1~bpo12+1 (2023-11-23) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 24 2020 date -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd -rwxr-xr-x 1 root root 93936 Sep 24 2020 df -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir -rwxr-xr-x 1 root root 84440 Jan 20 2022 dmesg lrwxrwxrwx 1 root root 8 Nov 7 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 7 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo -rwxr-xr-x 1 root root 28 Jan 25 2023 egrep -rwxr-xr-x 1 root root 39680 Sep 24 2020 false -rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep -rwxr-xr-x 1 root root 69032 Jan 20 2022 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Jan 25 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 98048 Apr 10 2022 gzip -rwxr-xr-x 1 root root 22600 Nov 7 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls -rwxr-xr-x 1 root root 149736 Jan 20 2022 lsblk -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp -rwxr-xr-x 1 root root 59632 Jan 20 2022 more -rwsr-xr-x 1 root root 55528 Jan 20 2022 mount -rwxr-xr-x 1 root root 18664 Jan 20 2022 mountpoint -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv lrwxrwxrwx 1 root root 8 Nov 7 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Feb 8 15:47 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty -rwsr-xr-x 1 root root 71912 Jan 20 2022 su -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync -rwxr-xr-x 1 root root 531928 Feb 17 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch -rwxr-xr-x 1 root root 39680 Sep 24 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jan 20 2022 umount -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir -rwxr-xr-x 1 root root 63744 Jan 20 2022 wdctl lrwxrwxrwx 1 root root 8 Nov 7 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/2838794/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, cython3, help2man, procps dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 17743 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pip; however: Package python3-pip is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on procps; however: Package procps is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu67{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libncurses6{a} libpipeline1{a} libprocps8{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} openssl{a} po-debconf{a} procps{a} python-pip-whl{a} python3{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-dev{a} python3-distutils{a} python3-importlib-metadata{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pip{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pyparsing{a} python3-pytest{a} python3-setuptools{a} python3-six{a} python3-toml{a} python3-wheel{a} python3-zipp{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libgpm2 libltdl-dev libmail-sendmail-perl lynx psmisc python3-pygments wget 0 packages upgraded, 89 newly installed, 0 to remove and 0 not upgraded. Need to get 44.0 MB of archives. After unpacking 168 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8+deb11u1 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 tzdata all 2021a-1+deb11u10 [286 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2+deb11u2 [102 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 libprocps8 amd64 2:3.3.17-5 [63.9 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 procps amd64 2:3.3.17-5 [502 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1w-0+deb11u1 [859 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3+deb11u1 [273 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3+deb11u1 [128 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3+deb11u1 [69.2 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 cython3 amd64 0.29.21-3+b1 [1312 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 help2man amd64 1.48.1 [190 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3+deb11u1 [153 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 libexpat1-dev amd64 2.2.10-2+deb11u5 [141 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 62 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3+deb11u1 [2166 kB] Get: 63 http://deb.debian.org/debian bullseye/main amd64 libpython3.9 amd64 3.9.2-1 [1691 kB] Get: 64 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-dev amd64 3.9.2-1 [4028 kB] Get: 65 http://deb.debian.org/debian bullseye/main amd64 libpython3-dev amd64 3.9.2-3 [21.7 kB] Get: 66 http://deb.debian.org/debian bullseye/main amd64 libpython3-all-dev amd64 3.9.2-3 [1068 B] Get: 67 http://deb.debian.org/debian bullseye/main amd64 python-pip-whl all 20.3.4-4+deb11u1 [1948 kB] Get: 68 http://deb.debian.org/debian bullseye/main amd64 python3-all amd64 3.9.2-3 [1056 B] Get: 69 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2+deb11u2 [191 kB] Get: 70 http://deb.debian.org/debian bullseye/main amd64 python3.9-dev amd64 3.9.2-1 [515 kB] Get: 71 http://deb.debian.org/debian bullseye/main amd64 python3-dev amd64 3.9.2-3 [24.8 kB] Get: 72 http://deb.debian.org/debian bullseye/main amd64 python3-all-dev amd64 3.9.2-3 [1064 B] Get: 73 http://deb.debian.org/debian bullseye/main amd64 python3-attr all 20.3.0-1 [52.9 kB] Get: 74 http://deb.debian.org/debian bullseye/main amd64 python3-six all 1.16.0-2 [17.5 kB] Get: 75 http://deb.debian.org/debian bullseye/main amd64 python3-more-itertools all 4.2.0-3 [42.7 kB] Get: 76 http://deb.debian.org/debian bullseye/main amd64 python3-zipp all 1.0.0-3 [6060 B] Get: 77 http://deb.debian.org/debian bullseye/main amd64 python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get: 78 http://deb.debian.org/debian bullseye/main amd64 python3-iniconfig all 1.1.1-1 [6308 B] Get: 79 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 80 http://deb.debian.org/debian bullseye/main amd64 python3-numpy amd64 1:1.19.5-1 [2693 kB] Get: 81 http://deb.debian.org/debian bullseye/main amd64 python3-pyparsing all 2.4.7-1 [109 kB] Get: 82 http://deb.debian.org/debian bullseye/main amd64 python3-packaging all 20.9-2 [33.5 kB] Get: 83 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB] Get: 84 http://deb.debian.org/debian bullseye/main amd64 python3-wheel all 0.34.2-1 [24.0 kB] Get: 85 http://deb.debian.org/debian bullseye/main amd64 python3-pip all 20.3.4-4+deb11u1 [337 kB] Get: 86 http://deb.debian.org/debian bullseye/main amd64 python3-pluggy all 0.13.0-6 [22.3 kB] Get: 87 http://deb.debian.org/debian bullseye/main amd64 python3-py all 1.10.0-1 [94.2 kB] Get: 88 http://deb.debian.org/debian bullseye/main amd64 python3-toml all 0.10.1-1 [15.9 kB] Get: 89 http://deb.debian.org/debian bullseye/main amd64 python3-pytest all 6.0.2-2 [211 kB] Fetched 44.0 MB in 1s (66.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17743 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8+deb11u1_amd64.deb ... Unpacking bsdextrautils (2.36.1-8+deb11u1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../1-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. 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Unpacking python3-more-itertools (4.2.0-3) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../57-python3-zipp_1.0.0-3_all.deb ... Unpacking python3-zipp (1.0.0-3) ... Selecting previously unselected package python3-importlib-metadata. Preparing to unpack .../58-python3-importlib-metadata_1.6.0-2_all.deb ... Unpacking python3-importlib-metadata (1.6.0-2) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../59-python3-iniconfig_1.1.1-1_all.deb ... Unpacking python3-iniconfig (1.1.1-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../60-python3-pkg-resources_52.0.0-4_all.deb ... Unpacking python3-pkg-resources (52.0.0-4) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../61-python3-numpy_1%3a1.19.5-1_amd64.deb ... Unpacking python3-numpy (1:1.19.5-1) ... Selecting previously unselected package python3-pyparsing. 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Current default time zone: 'Etc/UTC' Local time is now: Mon Feb 10 03:41:23 UTC 2025. Universal Time is now: Mon Feb 10 03:41:23 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libexpat1-dev:amd64 (2.2.10-2+deb11u5) ... Setting up libncurses6:amd64 (6.2+20201114-2+deb11u2) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libgfortran5:amd64 (10.2.1-6) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2+deb11u2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... 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Processing triggers for libc-bin (2.31-13+deb11u6) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/macs-2.2.7.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../macs_2.2.7.1-3_source.changes dpkg-buildpackage: info: source package macs dpkg-buildpackage: info: source version 2.2.7.1-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from macs-2.2.7.1/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/ debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/macs-2.2.7.1' dh_auto_clean || true I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -Rf test/macs2.2.7.1-3* test/speedtest* rm -f debian/*.1 debian/*-man-include make[1]: Leaving directory '/build/reproducible-path/macs-2.2.7.1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/macs-2.2.7.1' for pyx in $(find MACS2/ -name "*.pyx"); do \ rm -f ${pyx%%.pyx}.{h,c}; touch ${pyx}; done dh_auto_build I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/refinepeak_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/randsample_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/predictd_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/pileup_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/filterdup_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/diffpeak_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/cmbreps_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/callpeak_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/bdgpeakcall_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/bdgopt_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/bdgdiff_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/bdgcmp_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/bdgbroadcall_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/__init__.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/OutputWriter.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/OptValidator.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/Constants.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 creating /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO copying MACS2/IO/__init__.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO copying MACS2/khash.pxd -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/cPosValCalculation.pxd -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 running build_ext cythoning MACS2/Prob.pyx to MACS2/Prob.c cythoning MACS2/IO/Parser.pyx to MACS2/IO/Parser.c cythoning MACS2/Pileup.pyx to MACS2/Pileup.c cythoning MACS2/PeakModel.pyx to MACS2/PeakModel.c cythoning MACS2/PeakDetect.pyx to MACS2/PeakDetect.c cythoning MACS2/Signal.pyx to MACS2/Signal.c cythoning MACS2/IO/PeakIO.pyx to MACS2/IO/PeakIO.c cythoning MACS2/IO/BedGraphIO.pyx to MACS2/IO/BedGraphIO.c cythoning MACS2/IO/FixWidthTrack.pyx to MACS2/IO/FixWidthTrack.c cythoning MACS2/IO/PairedEndTrack.pyx to MACS2/IO/PairedEndTrack.c cythoning MACS2/IO/BedGraph.pyx to MACS2/IO/BedGraph.c cythoning MACS2/IO/ScoreTrack.pyx to MACS2/IO/ScoreTrack.c cythoning MACS2/IO/CallPeakUnit.pyx to MACS2/IO/CallPeakUnit.c building 'MACS2.Prob' extension creating build creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/MACS2 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/Prob.c -o build/temp.linux-x86_64-3.9/MACS2/Prob.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MACS2/Prob.o -lm -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/Prob.cpython-39-x86_64-linux-gnu.so building 'MACS2.IO.Parser' extension creating build/temp.linux-x86_64-3.9/MACS2/IO x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/IO/Parser.c -o build/temp.linux-x86_64-3.9/MACS2/IO/Parser.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MACS2/IO/Parser.o -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/Parser.cpython-39-x86_64-linux-gnu.so building 'MACS2.Pileup' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/Pileup.c -o build/temp.linux-x86_64-3.9/MACS2/Pileup.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/cPosValCalculation.c -o build/temp.linux-x86_64-3.9/MACS2/cPosValCalculation.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MACS2/Pileup.o build/temp.linux-x86_64-3.9/MACS2/cPosValCalculation.o -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/Pileup.cpython-39-x86_64-linux-gnu.so building 'MACS2.PeakModel' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/PeakModel.c -o build/temp.linux-x86_64-3.9/MACS2/PeakModel.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MACS2/PeakModel.o -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/PeakModel.cpython-39-x86_64-linux-gnu.so building 'MACS2.PeakDetect' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c MACS2/PeakDetect.c -o build/temp.linux-x86_64-3.9/MACS2/PeakDetect.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MACS2/PeakDetect.o -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/PeakDetect.cpython-39-x86_64-linux-gnu.so building 'MACS2.Signal' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/Signal.c -o build/temp.linux-x86_64-3.9/MACS2/Signal.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MACS2/Signal.o -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/Signal.cpython-39-x86_64-linux-gnu.so building 'MACS2.IO.PeakIO' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c MACS2/IO/PeakIO.c -o build/temp.linux-x86_64-3.9/MACS2/IO/PeakIO.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MACS2/IO/PeakIO.o -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/PeakIO.cpython-39-x86_64-linux-gnu.so building 'MACS2.IO.BedGraphIO' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c MACS2/IO/BedGraphIO.c -o build/temp.linux-x86_64-3.9/MACS2/IO/BedGraphIO.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MACS2/IO/BedGraphIO.o -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/BedGraphIO.cpython-39-x86_64-linux-gnu.so building 'MACS2.IO.FixWidthTrack' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/IO/FixWidthTrack.c -o build/temp.linux-x86_64-3.9/MACS2/IO/FixWidthTrack.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MACS2/IO/FixWidthTrack.o -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/FixWidthTrack.cpython-39-x86_64-linux-gnu.so building 'MACS2.IO.PairedEndTrack' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/IO/PairedEndTrack.c -o build/temp.linux-x86_64-3.9/MACS2/IO/PairedEndTrack.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MACS2/IO/PairedEndTrack.o -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/PairedEndTrack.cpython-39-x86_64-linux-gnu.so building 'MACS2.IO.BedGraph' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c MACS2/IO/BedGraph.c -o build/temp.linux-x86_64-3.9/MACS2/IO/BedGraph.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MACS2/IO/BedGraph.o -lm -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/BedGraph.cpython-39-x86_64-linux-gnu.so building 'MACS2.IO.ScoreTrack' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/IO/ScoreTrack.c -o build/temp.linux-x86_64-3.9/MACS2/IO/ScoreTrack.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MACS2/IO/ScoreTrack.o -lm -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/ScoreTrack.cpython-39-x86_64-linux-gnu.so building 'MACS2.IO.CallPeakUnit' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/IO/CallPeakUnit.c -o build/temp.linux-x86_64-3.9/MACS2/IO/CallPeakUnit.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MACS2/IO/CallPeakUnit.o -lm -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/CallPeakUnit.cpython-39-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.9 copying and adjusting bin/macs2 -> build/scripts-3.9 changing mode of build/scripts-3.9/macs2 from 644 to 755 PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS2/build/ help2man \ --no-discard-stderr --no-info \ --name "macs2 \- Model\-based Analysis for ChIP\-Sequencing" "python3 bin/macs2" > debian/macs2.1 for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do printf \ "[NAME]\nmacs2_${subcommand} \- Model\-based Analysis for ChIP\-Sequencing\n" \ > debian/macs2_${subcommand}-man-include; done for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do \ PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS2/build/ help2man \ --no-discard-stderr --no-info --version-string="2.2.7.1" \ --include debian/macs2_${subcommand}-man-include \ "python3 bin/macs2 ${subcommand}" > \ debian/macs2_${subcommand}.1; done make[1]: Leaving directory '/build/reproducible-path/macs-2.2.7.1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/macs-2.2.7.1' dh_auto_test I: pybuild base:232: cd /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build; python3.9 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.9.2, pytest-6.0.2, py-1.10.0, pluggy-0.13.0 rootdir: /build/reproducible-path/macs-2.2.7.1 collected 42 items test/test_BedGraph.py .... [ 9%] test/test_FixWidthTrack.py .... [ 19%] test/test_PairedEndTrack.py .... [ 28%] test/test_Parser.py ... [ 35%] test/test_PeakIO.py ... [ 42%] test/test_Pileup.py .. [ 47%] test/test_Prob.py ................ [ 85%] test/test_ScoreTrack.py .... [ 95%] test/test_Signal.py s. [100%] ======================== 41 passed, 1 skipped in 1.10s ========================= cd test && for PY3VER in 3.9; do \ export PATH=/build/reproducible-path/macs-2.2.7.1/build/scripts-${PY3VER}:$PATH \ && export PYTHONPATH=/build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_${PY3VER}_MACS2/build \ && ./cmdlinetest macs2.2.7.1-3-${PY3VER} ; done 1. callpeak 1.1 callpeak narrow 1.2 callpeak broad 1.3 callpeak on PE narrow/broad 2. pileup 3. filterdup 4. predictd 5. randsample 6. refinepeak 7. bdgcmp 8. bdgpeakcall 9. bdgbroadcall 10. bdgdiff 11. cmbreps 12. bdgopt 13. 50k contigs with buffersize 13.1 callpeak 13.2 filterdup 13.3 pileup 13.4 randsample 14. search for errors or warnings in log files checking macs2.2.7.1-3-3.9_run_50kcontigs/run_callpeak_50kcontigs.log... ... clear! checking macs2.2.7.1-3-3.9_run_50kcontigs/run_filterdup_50kcontigs.log... ... clear! checking macs2.2.7.1-3-3.9_run_50kcontigs/run_pileup_ChIP.bed.log... ... clear! checking macs2.2.7.1-3-3.9_run_50kcontigs/run_randsample.log... ... clear! checking macs2.2.7.1-3-3.9_run_bdgbroadcall/run_bdgbroadcall_w_prefix.log... ... clear! checking macs2.2.7.1-3-3.9_run_bdgcmp/run_bdgcmp.log... ... clear! checking macs2.2.7.1-3-3.9_run_bdgdiff/run_bdgdiff_w_o_file.log... ... clear! checking macs2.2.7.1-3-3.9_run_bdgdiff/run_bdgdiff_w_prefix.log... ... clear! checking macs2.2.7.1-3-3.9_run_bdgopt/run_bdgopt_max.log... ... clear! checking macs2.2.7.1-3-3.9_run_bdgopt/run_bdgopt_min.log... ... clear! checking macs2.2.7.1-3-3.9_run_bdgpeakcall/run_bdgpeakcall_cutoff.log... ... clear! checking macs2.2.7.1-3-3.9_run_bdgpeakcall/run_bdgpeakcall_w_prefix.log... ... clear! checking macs2.2.7.1-3-3.9_run_callpeak_broad/run_callpeak_broad.log... ... clear! checking macs2.2.7.1-3-3.9_run_callpeak_narrow/run_callpeak_narrow0.log... ... clear! checking macs2.2.7.1-3-3.9_run_callpeak_narrow/run_callpeak_narrow1.log... ... clear! checking macs2.2.7.1-3-3.9_run_callpeak_narrow/run_callpeak_narrow2.log... ... clear! checking macs2.2.7.1-3-3.9_run_callpeak_narrow/run_callpeak_narrow3.log... ... clear! checking macs2.2.7.1-3-3.9_run_callpeak_narrow/run_callpeak_narrow4.log... ... clear! checking macs2.2.7.1-3-3.9_run_callpeak_narrow/run_callpeak_narrow5.log... ... clear! checking macs2.2.7.1-3-3.9_run_callpeak_narrow_revert/run_callpeak_narrow_revert.log... ... clear! checking macs2.2.7.1-3-3.9_run_callpeak_pe_broad/run_callpeak_bampe_broad.log... ... clear! checking macs2.2.7.1-3-3.9_run_callpeak_pe_broad/run_callpeak_bedpe_broad.log... ... clear! checking macs2.2.7.1-3-3.9_run_callpeak_pe_narrow/run_callpeak_bampe_narrow.log... ... clear! checking macs2.2.7.1-3-3.9_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow.log... ... clear! checking macs2.2.7.1-3-3.9_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip.log... ... clear! checking macs2.2.7.1-3-3.9_run_cmbreps/run_cmbreps_fisher.log... ... clear! checking macs2.2.7.1-3-3.9_run_cmbreps/run_cmbreps_max.log... ... clear! checking macs2.2.7.1-3-3.9_run_cmbreps/run_cmbreps_mean.log... ... clear! checking macs2.2.7.1-3-3.9_run_filterdup/run_filterdup.log... ... clear! checking macs2.2.7.1-3-3.9_run_filterdup/run_filterdup_d.log... ... clear! checking macs2.2.7.1-3-3.9_run_filterdup/run_filterdup_pe.log... ... clear! checking macs2.2.7.1-3-3.9_run_filterdup/run_filterdup_pe_d.log... ... clear! checking macs2.2.7.1-3-3.9_run_pileup/run_pileup_CTRL.bed.log... ... clear! checking macs2.2.7.1-3-3.9_run_pileup/run_pileup_CTRLPE.bampe.log... ... clear! checking macs2.2.7.1-3-3.9_run_pileup/run_pileup_CTRLPE.bedpe.log... ... clear! checking macs2.2.7.1-3-3.9_run_pileup/run_pileup_ChIP.bed.log... ... clear! checking macs2.2.7.1-3-3.9_run_pileup/run_pileup_ChIPPE.bampe.log... ... clear! checking macs2.2.7.1-3-3.9_run_pileup/run_pileup_ChIPPE.bedpe.log... ... clear! checking macs2.2.7.1-3-3.9_run_predictd/run_predictd.log... ... clear! checking macs2.2.7.1-3-3.9_run_randsample/run_randsample.log... ... clear! checking macs2.2.7.1-3-3.9_run_randsample/run_randsample_bampe.log... ... clear! checking macs2.2.7.1-3-3.9_run_randsample/run_randsample_bedpe.log... ... clear! checking macs2.2.7.1-3-3.9_run_refinepeak/run_refinepeak_w_ofile.log... ... clear! checking macs2.2.7.1-3-3.9_run_refinepeak/run_refinepeak_w_prefix.log... ... clear! 15. compare with standard outputs 14.1.1 checking 50kcontigs run_callpeak_50kcontigs_peaks.narrowPeak ... ... success! 14.1.2 checking 50kcontigs run_callpeak_50kcontigs_summits.bed ... ... success! 14.1.3 checking 50kcontigs run_filterdup_result.bed ... ... success! 14.1.4 checking 50kcontigs run_pileup_ChIP.bed.bdg ... ... success! 14.2.1 checking bdgbroadcall run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ... ... success! 14.3.1 checking bdgcmp run_bdgcmp_FE.bdg ... ... success! 14.3.2 checking bdgcmp run_bdgcmp_ppois.bdg ... ... success! 14.4.1 checking bdgdiff common.bed ... ... success! 14.4.2 checking bdgdiff cond1.bed ... ... success! 14.4.3 checking bdgdiff cond2.bed ... ... success! 14.4.4 checking bdgdiff run_bdgdiff_prefix_c3.0_common.bed ... ... success! 14.4.5 checking bdgdiff run_bdgdiff_prefix_c3.0_cond1.bed ... ... success! 14.4.6 checking bdgdiff run_bdgdiff_prefix_c3.0_cond2.bed ... ... success! 14.5.1 checking bdgpeakcall run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... ... success! 14.6.1 checking callpeak_broad run_callpeak_broad_control_lambda.bdg ... ... success! 14.6.2 checking callpeak_broad run_callpeak_broad_peaks.broadPeak ... ... success! 14.6.3 checking callpeak_broad run_callpeak_broad_peaks.gappedPeak ... ... success! 14.6.4 checking callpeak_broad run_callpeak_broad_treat_pileup.bdg ... ... success! 14.7.1 checking callpeak_narrow run_callpeak_narrow0_control_lambda.bdg ... ... success! 14.7.2 checking callpeak_narrow run_callpeak_narrow0_peaks.narrowPeak ... ... success! 14.7.3 checking callpeak_narrow run_callpeak_narrow0_summits.bed ... ... success! 14.7.4 checking callpeak_narrow run_callpeak_narrow0_treat_pileup.bdg ... ... success! 14.7.5 checking callpeak_narrow run_callpeak_narrow1_control_lambda.bdg ... ... success! 14.7.6 checking callpeak_narrow run_callpeak_narrow1_peaks.narrowPeak ... ... success! 14.7.7 checking callpeak_narrow run_callpeak_narrow1_summits.bed ... ... success! 14.7.8 checking callpeak_narrow run_callpeak_narrow1_treat_pileup.bdg ... ... success! 14.7.9 checking callpeak_narrow run_callpeak_narrow2_control_lambda.bdg ... ... success! 14.7.10 checking callpeak_narrow run_callpeak_narrow2_peaks.narrowPeak ... ... success! 14.7.11 checking callpeak_narrow run_callpeak_narrow2_summits.bed ... ... success! 14.7.12 checking callpeak_narrow run_callpeak_narrow2_treat_pileup.bdg ... ... success! 14.7.13 checking callpeak_narrow run_callpeak_narrow3_control_lambda.bdg ... ... success! 14.7.14 checking callpeak_narrow run_callpeak_narrow3_peaks.narrowPeak ... ... success! 14.7.15 checking callpeak_narrow run_callpeak_narrow3_summits.bed ... ... success! 14.7.16 checking callpeak_narrow run_callpeak_narrow3_treat_pileup.bdg ... ... success! 14.7.17 checking callpeak_narrow run_callpeak_narrow4_control_lambda.bdg ... ... success! 14.7.18 checking callpeak_narrow run_callpeak_narrow4_peaks.narrowPeak ... ... success! 14.7.19 checking callpeak_narrow run_callpeak_narrow4_summits.bed ... ... success! 14.7.20 checking callpeak_narrow run_callpeak_narrow4_treat_pileup.bdg ... ... success! 14.7.21 checking callpeak_narrow run_callpeak_narrow5_control_lambda.bdg ... ... success! 14.7.22 checking callpeak_narrow run_callpeak_narrow5_peaks.narrowPeak ... ... success! 14.7.23 checking callpeak_narrow run_callpeak_narrow5_summits.bed ... ... success! 14.7.24 checking callpeak_narrow run_callpeak_narrow5_treat_pileup.bdg ... ... success! 14.8.1 checking callpeak_narrow_revert run_callpeak_narrow_revert_control_lambda.bdg ... ... success! 14.8.2 checking callpeak_narrow_revert run_callpeak_narrow_revert_peaks.narrowPeak ... ... success! 14.8.3 checking callpeak_narrow_revert run_callpeak_narrow_revert_summits.bed ... ... success! 14.8.4 checking callpeak_narrow_revert run_callpeak_narrow_revert_treat_pileup.bdg ... ... success! 14.9.1 checking callpeak_pe_broad run_callpeak_bampe_broad_control_lambda.bdg ... ... success! 14.9.2 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.broadPeak ... ... success! 14.9.3 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.gappedPeak ... ... success! 14.9.4 checking callpeak_pe_broad run_callpeak_bampe_broad_treat_pileup.bdg ... ... success! 14.9.5 checking callpeak_pe_broad run_callpeak_bedpe_broad_control_lambda.bdg ... ... success! 14.9.6 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.broadPeak ... ... success! 14.9.7 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.gappedPeak ... ... success! 14.9.8 checking callpeak_pe_broad run_callpeak_bedpe_broad_treat_pileup.bdg ... ... success! 14.10.1 checking callpeak_pe_narrow run_callpeak_bampe_narrow_control_lambda.bdg ... ... success! 14.10.2 checking callpeak_pe_narrow run_callpeak_bampe_narrow_peaks.narrowPeak ... ... success! 14.10.3 checking callpeak_pe_narrow run_callpeak_bampe_narrow_summits.bed ... ... success! 14.10.4 checking callpeak_pe_narrow run_callpeak_bampe_narrow_treat_pileup.bdg ... ... success! 14.10.5 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_control_lambda.bdg ... ... success! 14.10.6 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_peaks.narrowPeak ... ... success! 14.10.7 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_summits.bed ... ... success! 14.10.8 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_treat_pileup.bdg ... ... success! 14.10.9 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... ... success! 14.10.10 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... ... success! 14.10.11 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_summits.bed ... ... success! 14.10.12 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... ... success! 14.11.1 checking cmbreps run_cmbreps_fisher.bdg ... ... success! 14.11.2 checking cmbreps run_cmbreps_max.bdg ... ... success! 14.11.3 checking cmbreps run_cmbreps_mean.bdg ... ... success! 14.12.1 checking filterdup run_filterdup_result.bed ... ... success! 14.12.2 checking filterdup run_filterdup_result_pe.bedpe ... ... success! 14.13.1 checking pileup run_pileup_CTRL.bed.bdg ... ... success! 14.13.2 checking pileup run_pileup_CTRLPE.bampe.bdg ... ... success! 14.13.3 checking pileup run_pileup_CTRLPE.bedpe.bdg ... ... success! 14.13.4 checking pileup run_pileup_ChIP.bed.bdg ... ... success! 14.13.5 checking pileup run_pileup_ChIPPE.bampe.bdg ... ... success! 14.13.6 checking pileup run_pileup_ChIPPE.bedpe.bdg ... ... success! 14.14.1 checking refinepeak run_refinepeak_w_ofile.bed ... ... success! 14.14.2 checking refinepeak run_refinepeak_w_prefix_refinepeak.bed ... ... success! 14.15.1 checking bdgopt run_bdgopt_max.bdg ... ... success! 14.15.2 checking bdgopt run_bdgopt_min.bdg ... ... success! 16. brief speed test CPU time (mm:ss): 00:02:09 Max mem (KB): 255808 make[1]: Leaving directory '/build/reproducible-path/macs-2.2.7.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/reproducible-path/macs-2.2.7.1/debian/macs running install running build running build_py running build_ext skipping 'MACS2/Prob.c' Cython extension (up-to-date) skipping 'MACS2/IO/Parser.c' Cython extension (up-to-date) skipping 'MACS2/Pileup.c' Cython extension (up-to-date) skipping 'MACS2/PeakModel.c' Cython extension (up-to-date) skipping 'MACS2/PeakDetect.c' Cython extension (up-to-date) skipping 'MACS2/Signal.c' Cython extension (up-to-date) skipping 'MACS2/IO/PeakIO.c' Cython extension (up-to-date) skipping 'MACS2/IO/BedGraphIO.c' Cython extension (up-to-date) skipping 'MACS2/IO/FixWidthTrack.c' Cython extension (up-to-date) skipping 'MACS2/IO/PairedEndTrack.c' Cython extension (up-to-date) skipping 'MACS2/IO/BedGraph.c' Cython extension (up-to-date) skipping 'MACS2/IO/ScoreTrack.c' Cython extension (up-to-date) skipping 'MACS2/IO/CallPeakUnit.c' Cython extension (up-to-date) running build_scripts running install_lib creating /build/reproducible-path/macs-2.2.7.1/debian/macs/usr creating /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib creating /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9 creating /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages creating /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 creating /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/bdgopt_cmd.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/cmbreps_cmd.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/bdgdiff_cmd.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/bdgbroadcall_cmd.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/bdgpeakcall_cmd.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/bdgcmp_cmd.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/refinepeak_cmd.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/randsample_cmd.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/predictd_cmd.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/filterdup_cmd.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/pileup_cmd.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/OutputWriter.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/OptValidator.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/callpeak_cmd.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/Constants.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/Signal.cpython-39-x86_64-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/PeakDetect.cpython-39-x86_64-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/PeakModel.cpython-39-x86_64-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/Pileup.cpython-39-x86_64-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/Prob.cpython-39-x86_64-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/cPosValCalculation.pxd -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/khash.pxd -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 creating /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO creating /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/CallPeakUnit.cpython-39-x86_64-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/ScoreTrack.cpython-39-x86_64-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/BedGraph.cpython-39-x86_64-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/PairedEndTrack.cpython-39-x86_64-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/FixWidthTrack.cpython-39-x86_64-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/BedGraphIO.cpython-39-x86_64-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/PeakIO.cpython-39-x86_64-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/Parser.cpython-39-x86_64-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/__init__.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/Constants.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/OptValidator.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/OutputWriter.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__init__.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/bdgbroadcall_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/bdgcmp_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/bdgdiff_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/bdgopt_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/bdgpeakcall_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/callpeak_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/cmbreps_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/diffpeak_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/filterdup_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/pileup_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/predictd_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/randsample_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/refinepeak_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/Constants.py to Constants.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/OptValidator.py to OptValidator.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/OutputWriter.py to OutputWriter.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/bdgbroadcall_cmd.py to bdgbroadcall_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/bdgcmp_cmd.py to bdgcmp_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/bdgdiff_cmd.py to bdgdiff_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/bdgopt_cmd.py to bdgopt_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/bdgpeakcall_cmd.py to bdgpeakcall_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/callpeak_cmd.py to callpeak_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/cmbreps_cmd.py to cmbreps_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/diffpeak_cmd.py to diffpeak_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/filterdup_cmd.py to filterdup_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/pileup_cmd.py to pileup_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/predictd_cmd.py to predictd_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/randsample_cmd.py to randsample_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/refinepeak_cmd.py to refinepeak_cmd.cpython-39.pyc running install_egg_info running egg_info creating MACS2.egg-info writing MACS2.egg-info/PKG-INFO writing dependency_links to MACS2.egg-info/dependency_links.txt writing requirements to MACS2.egg-info/requires.txt writing top-level names to MACS2.egg-info/top_level.txt writing manifest file 'MACS2.egg-info/SOURCES.txt' reading manifest file 'MACS2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching '.gitignore' warning: no previously-included files found matching '.travis.yml' no previously-included directories found matching '.github' no previously-included directories found matching 'DOCKER' writing manifest file 'MACS2.egg-info/SOURCES.txt' Copying MACS2.egg-info to /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2-2.2.7.1.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/bin copying build/scripts-3.9/macs2 -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/bin changing mode of /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/bin/macs2 to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package macs: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package macs: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'macs' in '../macs_2.2.7.1-3_amd64.deb'. dpkg-deb: building package 'macs-dbgsym' in '../macs-dbgsym_2.2.7.1-3_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../macs_2.2.7.1-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from macs-2.2.7.1/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2838794 and its subdirectories I: Current time: Sun Feb 9 15:56:59 -12 2025 I: pbuilder-time-stamp: 1739159819 Mon Jan 8 21:33:52 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Mon Jan 8 21:33:52 UTC 2024 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Mon Jan 8 23:00:48 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Mon Jan 8 23:00:50 UTC 2024 I: macs_2.2.7.1-3_amd64.changes: Format: 1.8 Date: Wed, 15 Jul 2020 23:27:39 +0200 Source: macs Binary: macs macs-dbgsym Architecture: amd64 Version: 2.2.7.1-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: macs - Model-based Analysis of ChIP-Seq on short reads sequencers Closes: 965073 Changes: macs (2.2.7.1-3) unstable; urgency=medium . * Link properly with libm Closes: #965073 * debhelper-compat 13 (routine-update) Checksums-Sha1: b3594b0c7a0dfb723ef12173ced027b1b6ee6930 6918352 macs-dbgsym_2.2.7.1-3_amd64.deb 5fd57c59cfb04cb9b9eb92a5e3e6127db736a42f 7142 macs_2.2.7.1-3_amd64.buildinfo ee0e24c64d05036f0f6ba34926f3e8ae5355b862 2517808 macs_2.2.7.1-3_amd64.deb Checksums-Sha256: f09796d71735016fff2e40ba643dac91ffa9aca3dcd89731c0917260b622b67a 6918352 macs-dbgsym_2.2.7.1-3_amd64.deb 012d44858cce88f9f9ef777ace215deb0470d5b80345040279ab987d4b4de833 7142 macs_2.2.7.1-3_amd64.buildinfo 0781c25a2ea0dfa9e65e043fd506c275cd7b6b41c6adceb32ee9c59704e8affb 2517808 macs_2.2.7.1-3_amd64.deb Files: caccd66201e512e6205b40687399ab32 6918352 debug optional macs-dbgsym_2.2.7.1-3_amd64.deb f6df63a04572d49e09897869774b7a7e 7142 science optional macs_2.2.7.1-3_amd64.buildinfo 3b3a4630c98e39ca94963ad12516ca06 2517808 science optional macs_2.2.7.1-3_amd64.deb Mon Jan 8 23:00:52 UTC 2024 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.yLrKs9CN/macs_2.2.7.1-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.yLrKs9CN/macs_2.2.7.1-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.yLrKs9CN/macs_2.2.7.1-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.yLrKs9CN/b1/macs_2.2.7.1-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.yLrKs9CN/b2/macs_2.2.7.1-3_amd64.changes ## close_archive (total time: 0.001s) 0.000s 24 calls diffoscope.comparators.xz.XzContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer 0.000s 12 calls diffoscope.comparators.deb.DebTarContainer 0.000s 12 calls diffoscope.comparators.tar.TarContainer ## command (total time: 231.303s) 99.779s 3946 calls readelf 88.021s 452 calls diff 34.498s 880 calls objdump 4.350s 8 calls objcopy 4.239s 24 calls xz 0.394s 88 calls strings 0.009s 2 calls cmp 0.009s 2 calls cmp (external) 0.003s 25 calls cmp (internal) ## compare_files (cumulative) (total time: 608.809s) 114.987s 1 call abc.DotChangesFile 114.940s 2 calls abc.DebFile 114.836s 4 calls abc.XzFile 113.579s 2 calls abc.DebDataTarFile 112.919s 8 calls abc.ElfFile 34.835s 40 calls diffoscope.comparators.elf.ElfCodeSection 2.371s 126 calls diffoscope.comparators.elf.ElfSection 0.140s 8 calls diffoscope.comparators.elf.ElfStringSection 0.109s 2 calls abc.TarFile 0.061s 4 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.020s 1 call abc.TextFile 0.012s 2 calls abc.Md5sumsFile ## container_extract (total time: 4.919s) 4.240s 24 calls diffoscope.comparators.xz.XzContainer 0.399s 156 calls diffoscope.comparators.deb.DebTarContainer 0.154s 28 calls diffoscope.comparators.deb.DebContainer 0.126s 20 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 1.208s) 1.208s 147 calls linediff ## has_same_content_as (total time: 0.016s) 0.011s 2 calls abc.DebDataTarFile 0.002s 8 calls abc.ElfFile 0.001s 126 calls diffoscope.comparators.elf.ElfSection 0.001s 6 calls abc.TextFile 0.000s 4 calls abc.Md5sumsFile 0.000s 40 calls diffoscope.comparators.elf.ElfCodeSection 0.000s 4 calls abc.XzFile 0.000s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 2 calls abc.TarFile 0.000s 2 calls abc.DebFile 0.000s 1 call abc.DotChangesFile 0.000s 8 calls diffoscope.comparators.elf.ElfStringSection 0.000s 4 calls diffoscope.comparators.elf.MonkeyPatchedElfSection ## main (total time: 118.861s) 118.857s 2 calls outputs 0.004s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 24 calls diffoscope.comparators.xz.XzContainer 0.000s 12 calls diffoscope.comparators.deb.DebTarContainer 0.000s 12 calls diffoscope.comparators.tar.TarContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer ## output (total time: 2.953s) 2.947s 1 call html 0.004s 1 call json 0.003s 1 call text ## recognizes (total time: 5.177s) 3.272s 828 calls diffoscope.comparators.utils.archive.ArchiveMember 0.666s 2616 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.666s 12 calls diffoscope.comparators.binary.FilesystemFile 0.391s 2772 calls diffoscope.comparators.elf.ElfSection 0.116s 880 calls diffoscope.comparators.elf.ElfCodeSection 0.034s 216 calls diffoscope.comparators.debian.DebControlMember 0.027s 176 calls diffoscope.comparators.elf.ElfStringSection 0.004s 88 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.000s 32 calls abc.Md5sumsFile 0.000s 10 calls abc.DotChangesFile 0.000s 4 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink ## specialize (total time: 0.748s) 0.748s 208 calls specialize Mon Jan 8 23:02:51 UTC 2024 E: macs failed to build reproducibly in bullseye on amd64. Mon Jan 8 23:02:51 UTC 2024 E: diffoscope 240 found issues, please check https://tests.reproducible-builds.org/debian/dbd/bullseye/amd64/macs_2.2.7.1-3.diffoscope.html Mon Jan 8 23:02:53 UTC 2024 I: Submitting .buildinfo files to external archives: Mon Jan 8 23:02:53 UTC 2024 I: Submitting 8.0K b1/macs_2.2.7.1-3_amd64.buildinfo.asc Mon Jan 8 23:02:54 UTC 2024 I: Submitting 8.0K b2/macs_2.2.7.1-3_amd64.buildinfo.asc Mon Jan 8 23:02:54 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Jan 8 23:02:54 UTC 2024 I: Done submitting .buildinfo files. Mon Jan 8 23:02:54 UTC 2024 I: Removing signed macs_2.2.7.1-3_amd64.buildinfo.asc files: removed './b1/macs_2.2.7.1-3_amd64.buildinfo.asc' removed './b2/macs_2.2.7.1-3_amd64.buildinfo.asc'