Fri Oct 29 19:35:29 UTC 2021 I: starting to build libbiod/bullseye/amd64 on jenkins on '2021-10-29 19:35' Fri Oct 29 19:35:29 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_21/33215/console.log Fri Oct 29 19:35:29 UTC 2021 I: Downloading source for bullseye/libbiod=0.2.3+git20191120.b8eecef-2 --2021-10-29 19:35:29-- http://cdn-fastly.deb.debian.org/debian/pool/main/libb/libbiod/libbiod_0.2.3%2bgit20191120.b8eecef-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2173 (2.1K) Saving to: ‘libbiod_0.2.3+git20191120.b8eecef-2.dsc’ 0K .. 100% 280M=0s 2021-10-29 19:35:29 (280 MB/s) - ‘libbiod_0.2.3+git20191120.b8eecef-2.dsc’ saved [2173/2173] Fri Oct 29 19:35:29 UTC 2021 I: libbiod_0.2.3+git20191120.b8eecef-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbiod Binary: libbiod0, libbiod-dev Architecture: any Version: 0.2.3+git20191120.b8eecef-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/biod/BioD Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/libbiod Vcs-Git: https://salsa.debian.org/med-team/libbiod.git Build-Depends: debhelper-compat (= 12), dh-dlang, meson (>= 0.48), pkg-config, zlib1g-dev Package-List: libbiod-dev deb libdevel optional arch=any libbiod0 deb libs optional arch=amd64,arm64 Checksums-Sha1: 2b347e5b5244f0061ef633d78cc7513e69f80412 1841188 libbiod_0.2.3+git20191120.b8eecef.orig.tar.xz 3907ab0d0407a86da20c268499977a9b7b4207c0 5544 libbiod_0.2.3+git20191120.b8eecef-2.debian.tar.xz Checksums-Sha256: 89690d52a09d428fd53c9cbbf20b06898148d0f265db73e8acf1ca8e982802fb 1841188 libbiod_0.2.3+git20191120.b8eecef.orig.tar.xz 52f2375e62727ccf624f961bc0f9859ad2666bb99349b8c24fd5367c33d939ef 5544 libbiod_0.2.3+git20191120.b8eecef-2.debian.tar.xz Files: 83fdf0e87764bad21854d48834e61b7c 1841188 libbiod_0.2.3+git20191120.b8eecef.orig.tar.xz bbf5e72de6fde6e56930059b60df0dab 5544 libbiod_0.2.3+git20191120.b8eecef-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCgAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl4eMT8OHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtGcBQ/9ECkFqtcmhyl+umCA/iqDZ14c6z3BryweI4tl 6ckiP3OTDOXGkyWQVcTofLN2yQXyQlxi0IPn5CN4OpDzEmFqMB2q6rAZeWdnho1U TS3BdsNH3rLkAPPukFhw5j7sQWHiaeWOL7a+SKBIeMqH/xScLlyBKBrSE3gWnh/c x4HXlvf4+xX0xcZPYRz1ekccy7nJK2TfAducj/dILC/Aq7aaKs/tRZ+IUPEOvi7V BJlllbH+Jyc8bvZlQXB7mrVi5A7HCjkGeCYHZ9qLHNWC9HiFN5VjQHDezwZvD1S9 eoFwVaw29WKWPGTf5Yf3d/9nM0/eHmOCt97nsUQB6cucx6UQ4cwNa+oZ0JcYwWZF uhIBGBxyqFMstJNyVrqMJLNnt5bcb10KFhAphgxkHzW85n1MkqsLJDklyZfGgucR TDdxbji7Iy1xRepltzAbe6guNEBFftU8WJdgc2bDciq5FiNLLB6OGFTb1XGPAYVY cV0zOVvFtz3EriqQUSzD9POaaf/ODjvUz2BW9KyOQwWSh9+yRYUlPRYMyKrXLdrO qc4qsIfphWoyr0AQX9/5IORpTBqTqoQwkdN66jrcOKoIitneGY7l2S56nO5p0TZg iCzCl3z+GW8PHHq/nJ6LE4/dFnMUDeGtf9t984is7VplgZ07CeRRpi3JRpYqYUUC nuTEniA= =Z+kQ -----END PGP SIGNATURE----- Fri Oct 29 19:35:29 UTC 2021 I: Checking whether the package is not for us Fri Oct 29 19:35:29 UTC 2021 I: Starting 1st build on remote node ionos11-amd64.debian.net. Fri Oct 29 19:35:29 UTC 2021 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Fri Oct 29 19:38:24 UTC 2021 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 29 07:35:30 -12 2021 I: pbuilder-time-stamp: 1635536130 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbiod_0.2.3+git20191120.b8eecef-2.dsc] I: copying [./libbiod_0.2.3+git20191120.b8eecef.orig.tar.xz] I: copying [./libbiod_0.2.3+git20191120.b8eecef-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.gaRVNm82/trustedkeys.kbx': General error gpgv: Signature made Tue Jan 14 09:23:11 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libbiod_0.2.3+git20191120.b8eecef-2.dsc dpkg-source: info: extracting libbiod in libbiod-0.2.3+git20191120.b8eecef dpkg-source: info: unpacking libbiod_0.2.3+git20191120.b8eecef.orig.tar.xz dpkg-source: info: unpacking libbiod_0.2.3+git20191120.b8eecef-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_fix_clean_target.patch dpkg-source: info: applying 02_respect-env-dflags.patch dpkg-source: info: applying 03_add-meson-build.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2020155/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='5cafb55fa1b94bacb2d74bdb506fbd78' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2020155' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.G7Z0qrWn8q/pbuilderrc_S43B --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.G7Z0qrWn8q/b1 --logfile b1/build.log libbiod_0.2.3+git20191120.b8eecef-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 5.10.0-9-amd64 #1 SMP Debian 5.10.70-1 (2021-09-30) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 4 08:25 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jul 28 07:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 28 07:09 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jul 28 07:09 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 28 07:09 more -rwsr-xr-x 1 root root 55528 Jul 28 07:09 mount -rwxr-xr-x 1 root root 18664 Jul 28 07:09 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Oct 20 23:41 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jul 28 07:09 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 28 07:09 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 28 07:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/2020155/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dh-dlang, meson (>= 0.48), pkg-config, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-dlang; however: Package dh-dlang is not installed. pbuilder-satisfydepends-dummy depends on meson (>= 0.48); however: Package meson is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} default-d-compiler{a} dh-autoreconf{a} dh-dlang{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} ldc{a} libarchive-zip-perl{a} libbsd0{a} libdebhelper-perl{a} libedit2{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu67{a} libllvm11{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmpdec3{a} libphobos2-ldc-shared-dev{a} libphobos2-ldc-shared94{a} libpipeline1{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} libz3-4{a} m4{a} man-db{a} media-types{a} meson{a} ninja-build{a} pkg-config{a} po-debconf{a} python3{a} python3-minimal{a} python3-pkg-resources{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 59 newly installed, 0 to remove and 0 not upgraded. Need to get 62.9 MB of archives. After unpacking 291 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1 [108 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 libedit2 amd64 3.1-20191231-2+b1 [96.7 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 libz3-4 amd64 4.8.10-1 [6949 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 libllvm11 amd64 1:11.0.1-2 [17.9 MB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 libphobos2-ldc-shared94 amd64 1:1.24.0-2 [1280 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 libphobos2-ldc-shared-dev amd64 1:1.24.0-2 [6284 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 ldc amd64 1:1.24.0-2 [4090 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 default-d-compiler amd64 0.6.5 [3020 B] Get: 53 http://deb.debian.org/debian bullseye/main amd64 dh-dlang all 0.6.5 [5020 B] Get: 54 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-0 amd64 2.66.8-1 [1370 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 ninja-build amd64 1.10.1-1 [112 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 meson all 0.56.2-1 [437 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Fetched 62.9 MB in 1s (42.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../1-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../3-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libpython3.9-minimal:amd64. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_amd64.deb ... Unpacking libpython3.9-minimal:amd64 (3.9.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../6-libexpat1_2.2.10-2_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_amd64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:amd64 (3.9.2-1) ... Setting up libexpat1:amd64 (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20522 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_amd64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../2-libmpdec3_2.5.1-1_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../3-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../4-libreadline8_8.1-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:amd64. Preparing to unpack .../5-libpython3.9-stdlib_3.9.2-1_amd64.deb ... Unpacking libpython3.9-stdlib:amd64 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../6-python3.9_3.9.2-1_amd64.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../7-libpython3-stdlib_3.9.2-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20943 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_amd64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../06-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../07-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../08-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../09-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../10-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../11-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../12-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../13-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../14-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../15-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../16-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../17-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../18-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../19-libelf1_0.183-1_amd64.deb ... Unpacking libelf1:amd64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../20-dwz_0.13+20210201-1_amd64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../21-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../22-libxml2_2.9.10+dfsg-6.7_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../23-gettext_0.21-4_amd64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../24-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../25-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../26-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package libmd0:amd64. Preparing to unpack .../27-libmd0_1.0.3-3_amd64.deb ... Unpacking libmd0:amd64 (1.0.3-3) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../28-libbsd0_0.11.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.3-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../29-libedit2_3.1-20191231-2+b1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20191231-2+b1) ... Selecting previously unselected package libz3-4:amd64. Preparing to unpack .../30-libz3-4_4.8.10-1_amd64.deb ... Unpacking libz3-4:amd64 (4.8.10-1) ... Selecting previously unselected package libllvm11:amd64. Preparing to unpack .../31-libllvm11_1%3a11.0.1-2_amd64.deb ... Unpacking libllvm11:amd64 (1:11.0.1-2) ... Selecting previously unselected package libphobos2-ldc-shared94:amd64. Preparing to unpack .../32-libphobos2-ldc-shared94_1%3a1.24.0-2_amd64.deb ... Unpacking libphobos2-ldc-shared94:amd64 (1:1.24.0-2) ... Selecting previously unselected package libphobos2-ldc-shared-dev. Preparing to unpack .../33-libphobos2-ldc-shared-dev_1%3a1.24.0-2_amd64.deb ... Unpacking libphobos2-ldc-shared-dev (1:1.24.0-2) ... Selecting previously unselected package ldc. Preparing to unpack .../34-ldc_1%3a1.24.0-2_amd64.deb ... Unpacking ldc (1:1.24.0-2) ... Selecting previously unselected package default-d-compiler. Preparing to unpack .../35-default-d-compiler_0.6.5_amd64.deb ... Unpacking default-d-compiler (0.6.5) ... Selecting previously unselected package dh-dlang. Preparing to unpack .../36-dh-dlang_0.6.5_all.deb ... Unpacking dh-dlang (0.6.5) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../37-libglib2.0-0_2.66.8-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.66.8-1) ... Selecting previously unselected package ninja-build. Preparing to unpack .../38-ninja-build_1.10.1-1_amd64.deb ... Unpacking ninja-build (1.10.1-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../39-python3-pkg-resources_52.0.0-4_all.deb ... Unpacking python3-pkg-resources (52.0.0-4) ... Selecting previously unselected package meson. Preparing to unpack .../40-meson_0.56.2-1_all.deb ... Unpacking meson (0.56.2-1) ... Selecting previously unselected package pkg-config. Preparing to unpack .../41-pkg-config_0.29.2-1_amd64.deb ... Unpacking pkg-config (0.29.2-1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../42-zlib1g-dev_1%3a1.2.11.dfsg-2_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:amd64 (2.66.8-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up ninja-build (1.10.1-1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libz3-4:amd64 (4.8.10-1) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up pkg-config (0.29.2-1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up libmd0:amd64 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libbsd0:amd64 (0.11.3-1) ... Setting up libelf1:amd64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libedit2:amd64 (3.1-20191231-2+b1) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libllvm11:amd64 (1:11.0.1-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libphobos2-ldc-shared94:amd64 (1:1.24.0-2) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libphobos2-ldc-shared-dev (1:1.24.0-2) ... Setting up python3.9 (3.9.2-1) ... Setting up ldc (1:1.24.0-2) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up default-d-compiler (0.6.5) ... Setting up meson (0.56.2-1) ... Setting up dh-dlang (0.6.5) ... Processing triggers for libc-bin (2.31-13+deb11u2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/libbiod-0.2.3+git20191120.b8eecef/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbiod_0.2.3+git20191120.b8eecef-2_source.changes dpkg-buildpackage: info: source package libbiod dpkg-buildpackage: info: source version 0.2.3+git20191120.b8eecef-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --buildsystem=meson dh_auto_clean -O--buildsystem=meson dh_autoreconf_clean -O--buildsystem=meson dh_clean -O--buildsystem=meson debian/rules build dh build --buildsystem=meson dh_update_autotools_config -O--buildsystem=meson dh_autoreconf -O--buildsystem=meson debian/rules override_dh_auto_configure make[1]: Entering directory '/build/libbiod-0.2.3+git20191120.b8eecef' dh_auto_configure -- -Doptimize_strong=true cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/x86_64-linux-gnu -Doptimize_strong=true The Meson build system Version: 0.56.2 Source dir: /build/libbiod-0.2.3+git20191120.b8eecef Build dir: /build/libbiod-0.2.3+git20191120.b8eecef/obj-x86_64-linux-gnu Build type: native build Project name: BioD Project version: 0.2.3 Using 'CFLAGS' from environment with value: '-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong -Wformat -Werror=format-security' Using 'LDFLAGS' from environment with value: '-Wl,-z,relro' Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2' Using 'DC' from environment with value: 'ldc2' Using 'DFLAGS' from environment with value: '-O -g -release -wi' Using 'LDFLAGS' from environment with value: '-Wl,-z,relro' D compiler for the host machine: ldc2 (llvm 1.24.0 "LDC - the LLVM D compiler (1.24.0):") D linker for the host machine: ldc2 ld.gold 2.35.2 Using 'CFLAGS' from environment with value: '-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong -Wformat -Werror=format-security' Using 'LDFLAGS' from environment with value: '-Wl,-z,relro' Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2' Using 'DC' from environment with value: 'ldc2' Using 'DFLAGS' from environment with value: '-O -g -release -wi' Using 'LDFLAGS' from environment with value: '-Wl,-z,relro' Host machine cpu family: x86_64 Host machine cpu: x86_64 Found pkg-config: /usr/bin/pkg-config (0.29.2) Run-time dependency zlib found: YES 1.2.11 Build targets in project: 3 Option buildtype is: plain [default: debugoptimized] Found ninja-1.10.1 at /usr/bin/ninja make[1]: Leaving directory '/build/libbiod-0.2.3+git20191120.b8eecef' dh_auto_build -O--buildsystem=meson cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 ninja -j15 -v [1/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/contrib_undead_doformat.d.o -c ../contrib/undead/doformat.d [2/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_bgzf_chunk.d.o -c ../bio/core/bgzf/chunk.d [3/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_bgzf_constants.d.o -c ../bio/core/bgzf/constants.d [4/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_base.d.o -c ../bio/core/base.d [5/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_bgzf_compress.d.o -c ../bio/core/bgzf/compress.d [6/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/contrib_undead_utf.d.o -c ../contrib/undead/utf.d [7/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_genotype.d.o -c ../bio/core/genotype.d [8/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_kmer.d.o -c ../bio/core/kmer.d [9/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_algo.d.o -c ../bio/core/utils/algo.d [10/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_exception.d.o -c ../bio/core/utils/exception.d [11/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_region.d.o -c ../bio/core/region.d [12/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_tinymap.d.o -c ../bio/core/tinymap.d [13/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_decompress.d.o -c ../bio/core/decompress.d [14/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/contrib_undead_cstream.d.o -c ../contrib/undead/cstream.d [15/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_bgzf_block.d.o -c ../bio/core/bgzf/block.d [16/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_memoize.d.o -c ../bio/core/utils/memoize.d [17/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_call.d.o -c ../bio/core/call.d [18/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_sequence.d.o -c ../bio/core/sequence.d [19/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_outbuffer.d.o -c ../bio/core/utils/outbuffer.d [20/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_roundbuf.d.o -c ../bio/core/utils/roundbuf.d [21/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_switchendianness.d.o -c ../bio/core/utils/switchendianness.d [22/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_format.d.o -c ../bio/core/utils/format.d [23/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_range.d.o -c ../bio/core/utils/range.d [24/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_zlib.d.o -c ../bio/core/utils/zlib.d [25/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_constants.d.o -c ../bio/std/experimental/hts/constants.d [26/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_logger.d.o -c ../bio/std/experimental/hts/logger.d [27/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_stream.d.o -c ../bio/core/utils/stream.d [28/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_bylinefast.d.o -c ../bio/core/utils/bylinefast.d [29/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_hashing.d.o -c ../bio/std/experimental/hts/hashing.d [30/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/contrib_undead_internal_file.d.o -c ../contrib/undead/internal/file.d [31/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_bgzf_outputstream.d.o -c ../bio/core/bgzf/outputstream.d [32/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_header.d.o -c ../bio/std/experimental/hts/bam/header.d [33/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_tmpfile.d.o -c ../bio/core/utils/tmpfile.d [34/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_reads.d.o -c ../bio/std/experimental/hts/reads.d [35/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_bgzf_virtualoffset.d.o -c ../bio/core/bgzf/virtualoffset.d [36/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_pileup.d.o -c ../bio/std/experimental/hts/pileup.d [37/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_genotype_maf.d.o -c ../bio/std/genotype/maf.d [38/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_bai_bin.d.o -c ../bio/std/hts/bam/bai/bin.d [39/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_file_fastq.d.o -c ../bio/std/file/fastq.d [40/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_writer.d.o -c ../bio/std/experimental/hts/bam/writer.d [41/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_constants.d.o -c ../bio/std/hts/bam/constants.d [42/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_md_core.d.o -c ../bio/std/hts/bam/md/core.d [43/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_baifile.d.o -c ../bio/std/hts/bam/baifile.d [44/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_unpack.d.o -c ../bio/std/experimental/hts/unpack.d [45/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_baseinfo.d.o -c ../bio/std/hts/bam/baseinfo.d [46/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_bgzf_inputstream.d.o -c ../bio/core/bgzf/inputstream.d [47/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_abstractreader.d.o -c ../bio/std/hts/bam/abstractreader.d [48/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_cigar.d.o -c ../bio/std/hts/bam/cigar.d [49/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_bgzf_writer.d.o -c ../bio/std/experimental/hts/bgzf_writer.d [50/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_md_reconstruct.d.o -c ../bio/std/hts/bam/md/reconstruct.d [51/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_pileup.d.o -c ../bio/std/hts/bam/pileup.d [52/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_md_parse.d.o -c ../bio/std/hts/bam/md/parse.d ../bio/std/hts/bam/md/parse.d(49): Deprecation: returning this._cached_front escapes a reference to parameter this ../bio/std/hts/bam/md/parse.d(49): perhaps annotate the parameter with return ../bio/std/hts/bam/md/parse.d(53): Deprecation: returning this._cached_back escapes a reference to parameter this ../bio/std/hts/bam/md/parse.d(53): perhaps annotate the parameter with return [53/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_readrange.d.o -c ../bio/std/hts/bam/readrange.d [54/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_reference.d.o -c ../bio/std/hts/bam/reference.d [55/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_region.d.o -c ../bio/std/hts/bam/region.d [56/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_referenceinfo.d.o -c ../bio/std/hts/bam/referenceinfo.d [57/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/contrib_undead_stream.d.o -c ../contrib/undead/stream.d [58/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_splitter.d.o -c ../bio/std/hts/bam/splitter.d [59/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_randomaccessmanager.d.o -c ../bio/std/hts/bam/randomaccessmanager.d [60/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_bgzf.d.o -c ../bio/std/experimental/hts/bgzf.d ../bio/std/experimental/hts/bgzf.d(202): Deprecation: function std.typecons.Nullable!ulong.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bgzf.d(212): Deprecation: function std.typecons.Nullable!ulong.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bgzf.d(418): Deprecation: function std.typecons.Nullable!int.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bgzf.d(425): Deprecation: function std.typecons.Nullable!int.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. [61/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_md_operation.d.o -c ../bio/std/hts/bam/md/operation.d ../bio/std/hts/bam/md/operation.d(57): Deprecation: returning this._match escapes a reference to parameter this ../bio/std/hts/bam/md/operation.d(57): perhaps annotate the parameter with return ../bio/std/hts/bam/md/operation.d(72): Deprecation: returning this._deletion escapes a reference to parameter this ../bio/std/hts/bam/md/operation.d(72): perhaps annotate the parameter with return [62/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_validation_samheader.d.o -c ../bio/std/hts/bam/validation/samheader.d [63/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_bai_indexing.d.o -c ../bio/std/hts/bam/bai/indexing.d [64/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_iontorrent_flowindex.d.o -c ../bio/std/hts/iontorrent/flowindex.d [65/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_writer.d.o -c ../bio/std/hts/bam/writer.d [66/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_file_fai.d.o -c ../bio/std/file/fai.d [67/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_reader.d.o -c ../bio/std/experimental/hts/bam/reader.d ../bio/std/experimental/hts/bam/reader.d(237): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(245): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(246): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(250): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(254): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(258): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(267): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(268): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(269): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(273): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(296): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(297): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(301): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(306): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(307): Deprecation: function std.typecons.Nullable!int.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(314): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(316): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(335): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(337): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(339): Deprecation: function std.typecons.Nullable!uint.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(355): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(356): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(371): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(373): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(392): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(412): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(491): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. [68/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_genotype_snp.d.o -c ../bio/std/genotype/snp.d [69/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_file_fasta.d.o -c ../bio/std/file/fasta.d [70/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_snpcallers_simple.d.o -c ../bio/std/hts/snpcallers/simple.d [71/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_utils_array.d.o -c ../bio/std/hts/utils/array.d [72/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_sam_utils_recordparser.d.o -c ../bio/std/hts/sam/utils/recordparser.d sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(52): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(60): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable sam_alignment.rl(69): Warning: statement is not reachable sam_alignment.rl(76): Warning: statement is not reachable sam_alignment.rl(77): Warning: statement is not reachable sam_alignment.rl(82): Warning: statement is not reachable sam_alignment.rl(83): Warning: statement is not reachable sam_alignment.rl(131): Warning: statement is not reachable sam_alignment.rl(132): Warning: statement is not reachable sam_alignment.rl(163): Warning: statement is not reachable sam_alignment.rl(164): Warning: statement is not reachable sam_alignment.rl(176): Warning: statement is not reachable sam_alignment.rl(177): Warning: statement is not reachable sam_alignment.rl(188): Warning: statement is not reachable sam_alignment.rl(189): Warning: statement is not reachable sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(222): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(252): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable sam_alignment.rl(409): Warning: statement is not reachable sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable sam_alignment.rl(76): Warning: statement is not reachable sam_alignment.rl(82): Warning: statement is not reachable sam_alignment.rl(131): Warning: statement is not reachable sam_alignment.rl(163): Warning: statement is not reachable sam_alignment.rl(176): Warning: statement is not reachable sam_alignment.rl(188): Warning: statement is not reachable sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable [73/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_utils_graph.d.o -c ../bio/std/hts/utils/graph.d [74/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_maf_block.d.o -c ../bio/std/maf/block.d [75/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_snpcallers_maq.d.o -c ../bio/std/hts/snpcallers/maq.d ../bio/core/tinymap.d(61): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(76): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(101): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. [76/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_thirdparty_msgpack.d.o -c ../bio/std/hts/thirdparty/msgpack.d ../bio/std/hts/thirdparty/msgpack.d(1116): Deprecation: returning this.vecList_ escapes a reference to parameter this ../bio/std/hts/thirdparty/msgpack.d(1116): perhaps annotate the parameter with return [77/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_range_splitter.d.o -c ../bio/std/range/splitter.d [78/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_sff_constants.d.o -c ../bio/std/sff/constants.d [79/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_utils_value.d.o -c ../bio/std/hts/utils/value.d [80/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_sff_index.d.o -c ../bio/std/sff/index.d [81/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_sff_read.d.o -c ../bio/std/sff/read.d [82/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_maf_reader.d.o -c ../bio/std/maf/reader.d [83/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_maf_parser.d.o -c ../bio/std/maf/parser.d [84/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_sff_utils_roundup.d.o -c ../bio/std/sff/utils/roundup.d [85/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_read.d.o -c ../bio/std/hts/bam/read.d [86/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_reader.d.o -c ../bio/std/hts/bam/reader.d [87/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_sff_readrange.d.o -c ../bio/std/sff/readrange.d [88/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_sff_reader.d.o -c ../bio/std/sff/reader.d [89/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/contrib_undead_utf.d.o -c ../contrib/undead/utf.d [90/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_sff_writer.d.o -c ../bio/std/sff/writer.d [91/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_bgzf_constants.d.o -c ../bio/core/bgzf/constants.d [92/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_bgzf_compress.d.o -c ../bio/core/bgzf/compress.d [93/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_base.d.o -c ../bio/core/base.d [94/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_bgzf_chunk.d.o -c ../bio/core/bgzf/chunk.d [95/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_iontorrent_flowcall.d.o -c ../bio/std/hts/iontorrent/flowcall.d [96/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_bgzf_block.d.o -c ../bio/core/bgzf/block.d [97/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_sam_utils_fastrecordparser.d.o -c ../bio/std/hts/sam/utils/fastrecordparser.d sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable sam_alignment.rl(76): Warning: statement is not reachable sam_alignment.rl(82): Warning: statement is not reachable sam_alignment.rl(131): Warning: statement is not reachable sam_alignment.rl(163): Warning: statement is not reachable sam_alignment.rl(176): Warning: statement is not reachable sam_alignment.rl(188): Warning: statement is not reachable sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable sam_alignment.rl(52): Warning: statement is not reachable sam_alignment.rl(60): Warning: statement is not reachable sam_alignment.rl(69): Warning: statement is not reachable sam_alignment.rl(77): Warning: statement is not reachable sam_alignment.rl(83): Warning: statement is not reachable sam_alignment.rl(132): Warning: statement is not reachable sam_alignment.rl(164): Warning: statement is not reachable sam_alignment.rl(177): Warning: statement is not reachable sam_alignment.rl(189): Warning: statement is not reachable sam_alignment.rl(222): Warning: statement is not reachable sam_alignment.rl(252): Warning: statement is not reachable sam_alignment.rl(409): Warning: statement is not reachable sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable sam_alignment.rl(76): Warning: statement is not reachable sam_alignment.rl(82): Warning: statement is not reachable sam_alignment.rl(131): Warning: statement is not reachable sam_alignment.rl(163): Warning: statement is not reachable sam_alignment.rl(176): Warning: statement is not reachable sam_alignment.rl(188): Warning: statement is not reachable sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable [98/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_sam_reader.d.o -c ../bio/std/hts/sam/reader.d [99/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/contrib_undead_doformat.d.o -c ../contrib/undead/doformat.d [100/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_call.d.o -c ../bio/core/call.d [101/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_genotype.d.o -c ../bio/core/genotype.d [102/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/contrib_undead_cstream.d.o -c ../contrib/undead/cstream.d ../contrib/undead/cstream.d(206): Deprecation: variable line is shadowing variable contrib.undead.cstream.CFile.__unittest_L151_C3.line. Rename the foreach variable. ../contrib/undead/cstream.d(216): Deprecation: variable line is shadowing variable contrib.undead.cstream.CFile.__unittest_L151_C3.line. Rename the foreach variable. [103/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_region.d.o -c ../bio/core/region.d [104/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_kmer.d.o -c ../bio/core/kmer.d [105/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_algo.d.o -c ../bio/core/utils/algo.d [106/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_bgzf_virtualoffset.d.o -c ../bio/core/bgzf/virtualoffset.d [107/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/contrib_undead_internal_file.d.o -c ../contrib/undead/internal/file.d [108/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_exception.d.o -c ../bio/core/utils/exception.d [109/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_bgzf_outputstream.d.o -c ../bio/core/bgzf/outputstream.d [110/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_outbuffer.d.o -c ../bio/core/utils/outbuffer.d [111/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_decompress.d.o -c ../bio/core/decompress.d [112/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_validation_alignment.d.o -c ../bio/std/hts/bam/validation/alignment.d [113/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_roundbuf.d.o -c ../bio/core/utils/roundbuf.d [114/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_switchendianness.d.o -c ../bio/core/utils/switchendianness.d [115/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_memoize.d.o -c ../bio/core/utils/memoize.d [116/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_zlib.d.o -c ../bio/core/utils/zlib.d [117/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_sam_header.d.o -c ../bio/std/hts/sam/header.d [118/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_tagvalue.d.o -c ../bio/std/hts/bam/tagvalue.d [119/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_tinymap.d.o -c ../bio/core/tinymap.d ../bio/core/tinymap.d(76): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(101): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(76): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(101): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(61): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(256): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(257): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(258): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(262): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(267): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(61): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(256): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(257): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(258): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(262): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(267): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(76): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(101): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(61): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. [120/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_format.d.o -c ../bio/core/utils/format.d [121/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_sequence.d.o -c ../bio/core/sequence.d [122/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_constants.d.o -c ../bio/std/experimental/hts/constants.d [123/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_bylinefast.d.o -c ../bio/core/utils/bylinefast.d [124/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_pileup.d.o -c ../bio/std/hts/bam/pileup.d [125/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_stream.d.o -c ../bio/core/utils/stream.d [126/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_logger.d.o -c ../bio/std/experimental/hts/logger.d [127/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_bgzf_inputstream.d.o -c ../bio/core/bgzf/inputstream.d [128/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_multireader.d.o -c ../bio/std/hts/bam/multireader.d [129/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_reads.d.o -c ../bio/std/experimental/hts/reads.d [130/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_utils_samheadermerger.d.o -c ../bio/std/hts/utils/samheadermerger.d ../bio/std/hts/utils/samheadermerger.d(217): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/std/hts/utils/samheadermerger.d(222): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/std/hts/utils/samheadermerger.d(217): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/std/hts/utils/samheadermerger.d(222): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. [131/199] rm -f libbiod.a && ar csrD libbiod.a libbiod.so.0.2.3.p/contrib_undead_cstream.d.o libbiod.so.0.2.3.p/contrib_undead_doformat.d.o libbiod.so.0.2.3.p/contrib_undead_internal_file.d.o libbiod.so.0.2.3.p/contrib_undead_stream.d.o libbiod.so.0.2.3.p/contrib_undead_utf.d.o libbiod.so.0.2.3.p/bio_core_base.d.o libbiod.so.0.2.3.p/bio_core_bgzf_block.d.o libbiod.so.0.2.3.p/bio_core_bgzf_chunk.d.o libbiod.so.0.2.3.p/bio_core_bgzf_compress.d.o libbiod.so.0.2.3.p/bio_core_bgzf_constants.d.o libbiod.so.0.2.3.p/bio_core_bgzf_inputstream.d.o libbiod.so.0.2.3.p/bio_core_bgzf_outputstream.d.o libbiod.so.0.2.3.p/bio_core_bgzf_virtualoffset.d.o libbiod.so.0.2.3.p/bio_core_call.d.o libbiod.so.0.2.3.p/bio_core_decompress.d.o libbiod.so.0.2.3.p/bio_core_genotype.d.o libbiod.so.0.2.3.p/bio_core_kmer.d.o libbiod.so.0.2.3.p/bio_core_region.d.o libbiod.so.0.2.3.p/bio_core_sequence.d.o libbiod.so.0.2.3.p/bio_core_tinymap.d.o libbiod.so.0.2.3.p/bio_core_utils_algo.d.o libbiod.so.0.2.3.p/bio_core_utils_bylinefast.d.o libbiod.so.0.2.3.p/bio_core_utils_exception.d.o libbiod.so.0.2.3.p/bio_core_utils_format.d.o libbiod.so.0.2.3.p/bio_core_utils_memoize.d.o libbiod.so.0.2.3.p/bio_core_utils_outbuffer.d.o libbiod.so.0.2.3.p/bio_core_utils_range.d.o libbiod.so.0.2.3.p/bio_core_utils_roundbuf.d.o libbiod.so.0.2.3.p/bio_core_utils_stream.d.o libbiod.so.0.2.3.p/bio_core_utils_switchendianness.d.o libbiod.so.0.2.3.p/bio_core_utils_tmpfile.d.o libbiod.so.0.2.3.p/bio_core_utils_zlib.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_header.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_reader.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_writer.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bgzf.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bgzf_writer.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_constants.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_hashing.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_logger.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_pileup.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_reads.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_unpack.d.o libbiod.so.0.2.3.p/bio_std_file_fai.d.o libbiod.so.0.2.3.p/bio_std_file_fasta.d.o libbiod.so.0.2.3.p/bio_std_file_fastq.d.o libbiod.so.0.2.3.p/bio_std_genotype_maf.d.o libbiod.so.0.2.3.p/bio_std_genotype_snp.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_abstractreader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_bai_bin.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_baifile.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_bai_indexing.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_baseinfo.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_cigar.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_constants.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_core.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_operation.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_parse.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_reconstruct.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_multireader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_pileup.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_randomaccessmanager.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_read.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_reader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_readrange.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_reference.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_referenceinfo.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_region.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_splitter.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_tagvalue.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_validation_alignment.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_validation_samheader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_writer.d.o libbiod.so.0.2.3.p/bio_std_hts_iontorrent_flowcall.d.o libbiod.so.0.2.3.p/bio_std_hts_iontorrent_flowindex.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_header.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_reader.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_utils_fastrecordparser.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_utils_recordparser.d.o libbiod.so.0.2.3.p/bio_std_hts_snpcallers_maq.d.o libbiod.so.0.2.3.p/bio_std_hts_snpcallers_simple.d.o libbiod.so.0.2.3.p/bio_std_hts_thirdparty_msgpack.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_array.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_graph.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_samheadermerger.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_value.d.o libbiod.so.0.2.3.p/bio_std_maf_block.d.o libbiod.so.0.2.3.p/bio_std_maf_parser.d.o libbiod.so.0.2.3.p/bio_std_maf_reader.d.o libbiod.so.0.2.3.p/bio_std_range_splitter.d.o libbiod.so.0.2.3.p/bio_std_sff_constants.d.o libbiod.so.0.2.3.p/bio_std_sff_index.d.o libbiod.so.0.2.3.p/bio_std_sff_read.d.o libbiod.so.0.2.3.p/bio_std_sff_reader.d.o libbiod.so.0.2.3.p/bio_std_sff_readrange.d.o libbiod.so.0.2.3.p/bio_std_sff_utils_roundup.d.o libbiod.so.0.2.3.p/bio_std_sff_writer.d.o [132/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_hashing.d.o -c ../bio/std/experimental/hts/hashing.d [133/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_bam_header.d.o -c ../bio/std/experimental/hts/bam/header.d [134/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_tmpfile.d.o -c ../bio/core/utils/tmpfile.d [135/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_range.d.o -c ../bio/core/utils/range.d [136/199] ldc2 -of=libbiod.so.0.2.3 libbiod.so.0.2.3.p/contrib_undead_cstream.d.o libbiod.so.0.2.3.p/contrib_undead_doformat.d.o libbiod.so.0.2.3.p/contrib_undead_internal_file.d.o libbiod.so.0.2.3.p/contrib_undead_stream.d.o libbiod.so.0.2.3.p/contrib_undead_utf.d.o libbiod.so.0.2.3.p/bio_core_base.d.o libbiod.so.0.2.3.p/bio_core_bgzf_block.d.o libbiod.so.0.2.3.p/bio_core_bgzf_chunk.d.o libbiod.so.0.2.3.p/bio_core_bgzf_compress.d.o libbiod.so.0.2.3.p/bio_core_bgzf_constants.d.o libbiod.so.0.2.3.p/bio_core_bgzf_inputstream.d.o libbiod.so.0.2.3.p/bio_core_bgzf_outputstream.d.o libbiod.so.0.2.3.p/bio_core_bgzf_virtualoffset.d.o libbiod.so.0.2.3.p/bio_core_call.d.o libbiod.so.0.2.3.p/bio_core_decompress.d.o libbiod.so.0.2.3.p/bio_core_genotype.d.o libbiod.so.0.2.3.p/bio_core_kmer.d.o libbiod.so.0.2.3.p/bio_core_region.d.o libbiod.so.0.2.3.p/bio_core_sequence.d.o libbiod.so.0.2.3.p/bio_core_tinymap.d.o libbiod.so.0.2.3.p/bio_core_utils_algo.d.o libbiod.so.0.2.3.p/bio_core_utils_bylinefast.d.o libbiod.so.0.2.3.p/bio_core_utils_exception.d.o libbiod.so.0.2.3.p/bio_core_utils_format.d.o libbiod.so.0.2.3.p/bio_core_utils_memoize.d.o libbiod.so.0.2.3.p/bio_core_utils_outbuffer.d.o libbiod.so.0.2.3.p/bio_core_utils_range.d.o libbiod.so.0.2.3.p/bio_core_utils_roundbuf.d.o libbiod.so.0.2.3.p/bio_core_utils_stream.d.o libbiod.so.0.2.3.p/bio_core_utils_switchendianness.d.o libbiod.so.0.2.3.p/bio_core_utils_tmpfile.d.o libbiod.so.0.2.3.p/bio_core_utils_zlib.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_header.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_reader.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_writer.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bgzf.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bgzf_writer.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_constants.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_hashing.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_logger.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_pileup.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_reads.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_unpack.d.o libbiod.so.0.2.3.p/bio_std_file_fai.d.o libbiod.so.0.2.3.p/bio_std_file_fasta.d.o libbiod.so.0.2.3.p/bio_std_file_fastq.d.o libbiod.so.0.2.3.p/bio_std_genotype_maf.d.o libbiod.so.0.2.3.p/bio_std_genotype_snp.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_abstractreader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_bai_bin.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_baifile.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_bai_indexing.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_baseinfo.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_cigar.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_constants.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_core.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_operation.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_parse.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_reconstruct.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_multireader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_pileup.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_randomaccessmanager.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_read.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_reader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_readrange.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_reference.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_referenceinfo.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_region.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_splitter.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_tagvalue.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_validation_alignment.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_validation_samheader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_writer.d.o libbiod.so.0.2.3.p/bio_std_hts_iontorrent_flowcall.d.o libbiod.so.0.2.3.p/bio_std_hts_iontorrent_flowindex.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_header.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_reader.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_utils_fastrecordparser.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_utils_recordparser.d.o libbiod.so.0.2.3.p/bio_std_hts_snpcallers_maq.d.o libbiod.so.0.2.3.p/bio_std_hts_snpcallers_simple.d.o libbiod.so.0.2.3.p/bio_std_hts_thirdparty_msgpack.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_array.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_graph.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_samheadermerger.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_value.d.o libbiod.so.0.2.3.p/bio_std_maf_block.d.o libbiod.so.0.2.3.p/bio_std_maf_parser.d.o libbiod.so.0.2.3.p/bio_std_maf_reader.d.o libbiod.so.0.2.3.p/bio_std_range_splitter.d.o libbiod.so.0.2.3.p/bio_std_sff_constants.d.o libbiod.so.0.2.3.p/bio_std_sff_index.d.o libbiod.so.0.2.3.p/bio_std_sff_read.d.o libbiod.so.0.2.3.p/bio_std_sff_reader.d.o libbiod.so.0.2.3.p/bio_std_sff_readrange.d.o libbiod.so.0.2.3.p/bio_std_sff_utils_roundup.d.o libbiod.so.0.2.3.p/bio_std_sff_writer.d.o -L=-soname -L=libbiod.so.0 -L=--allow-shlib-undefined -link-defaultlib-shared -shared -relocation-model=pic -O -g -release -wi -L=-z -L=relro -L=-lz [137/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_bai_bin.d.o -c ../bio/std/hts/bam/bai/bin.d [138/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_bgzf_writer.d.o -c ../bio/std/experimental/hts/bgzf_writer.d [139/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_genotype_maf.d.o -c ../bio/std/genotype/maf.d [140/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_bam_writer.d.o -c ../bio/std/experimental/hts/bam/writer.d [141/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_constants.d.o -c ../bio/std/hts/bam/constants.d [142/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_file_fastq.d.o -c ../bio/std/file/fastq.d [143/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_unpack.d.o -c ../bio/std/experimental/hts/unpack.d [144/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_pileup.d.o -c ../bio/std/experimental/hts/pileup.d [145/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_baseinfo.d.o -c ../bio/std/hts/bam/baseinfo.d [146/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_md_core.d.o -c ../bio/std/hts/bam/md/core.d [147/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_baifile.d.o -c ../bio/std/hts/bam/baifile.d [148/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_abstractreader.d.o -c ../bio/std/hts/bam/abstractreader.d [149/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_cigar.d.o -c ../bio/std/hts/bam/cigar.d [150/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_md_parse.d.o -c ../bio/std/hts/bam/md/parse.d ../bio/std/hts/bam/md/parse.d(49): Deprecation: returning this._cached_front escapes a reference to parameter this ../bio/std/hts/bam/md/parse.d(49): perhaps annotate the parameter with return ../bio/std/hts/bam/md/parse.d(53): Deprecation: returning this._cached_back escapes a reference to parameter this ../bio/std/hts/bam/md/parse.d(53): perhaps annotate the parameter with return [151/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_md_operation.d.o -c ../bio/std/hts/bam/md/operation.d ../bio/std/hts/bam/md/operation.d(57): Deprecation: returning this._match escapes a reference to parameter this ../bio/std/hts/bam/md/operation.d(57): perhaps annotate the parameter with return ../bio/std/hts/bam/md/operation.d(72): Deprecation: returning this._deletion escapes a reference to parameter this ../bio/std/hts/bam/md/operation.d(72): perhaps annotate the parameter with return [152/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_bai_indexing.d.o -c ../bio/std/hts/bam/bai/indexing.d [153/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_region.d.o -c ../bio/std/hts/bam/region.d [154/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_genotype_snp.d.o -c ../bio/std/genotype/snp.d [155/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/contrib_undead_stream.d.o -c ../contrib/undead/stream.d ../contrib/undead/stream.d(2192): Deprecation: variable line is shadowing variable contrib.undead.stream.File.__unittest_L2139_C3.line. Rename the foreach variable. ../contrib/undead/stream.d(2202): Deprecation: variable line is shadowing variable contrib.undead.stream.File.__unittest_L2139_C3.line. Rename the foreach variable. [156/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_readrange.d.o -c ../bio/std/hts/bam/readrange.d [157/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_file_fai.d.o -c ../bio/std/file/fai.d [158/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_referenceinfo.d.o -c ../bio/std/hts/bam/referenceinfo.d [159/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_bgzf.d.o -c ../bio/std/experimental/hts/bgzf.d ../bio/std/experimental/hts/bgzf.d(202): Deprecation: function std.typecons.Nullable!ulong.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bgzf.d(212): Deprecation: function std.typecons.Nullable!ulong.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bgzf.d(418): Deprecation: function std.typecons.Nullable!int.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bgzf.d(425): Deprecation: function std.typecons.Nullable!int.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. [160/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_iontorrent_flowindex.d.o -c ../bio/std/hts/iontorrent/flowindex.d [161/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_splitter.d.o -c ../bio/std/hts/bam/splitter.d [162/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_validation_samheader.d.o -c ../bio/std/hts/bam/validation/samheader.d [163/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_bam_reader.d.o -c ../bio/std/experimental/hts/bam/reader.d ../bio/std/experimental/hts/bam/reader.d(237): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(245): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(246): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(250): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(254): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(258): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(267): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(268): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(269): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(273): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(296): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(297): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(301): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(306): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(307): Deprecation: function std.typecons.Nullable!int.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(314): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(316): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(335): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(337): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(339): Deprecation: function std.typecons.Nullable!uint.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(355): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(356): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(371): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(373): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(392): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(412): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(491): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. [164/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_file_fasta.d.o -c ../bio/std/file/fasta.d [165/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_reference.d.o -c ../bio/std/hts/bam/reference.d [166/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_randomaccessmanager.d.o -c ../bio/std/hts/bam/randomaccessmanager.d [167/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_reader.d.o -c ../bio/std/hts/bam/reader.d [168/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_utils_array.d.o -c ../bio/std/hts/utils/array.d [169/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_utils_graph.d.o -c ../bio/std/hts/utils/graph.d [170/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_snpcallers_maq.d.o -c ../bio/std/hts/snpcallers/maq.d ../bio/core/tinymap.d(61): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(76): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(101): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. [171/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_writer.d.o -c ../bio/std/hts/bam/writer.d [172/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_snpcallers_simple.d.o -c ../bio/std/hts/snpcallers/simple.d [173/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_maf_block.d.o -c ../bio/std/maf/block.d [174/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_md_reconstruct.d.o -c ../bio/std/hts/bam/md/reconstruct.d [175/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_utils_value.d.o -c ../bio/std/hts/utils/value.d [176/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_sff_constants.d.o -c ../bio/std/sff/constants.d [177/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_sff_index.d.o -c ../bio/std/sff/index.d [178/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_range_splitter.d.o -c ../bio/std/range/splitter.d [179/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_sff_read.d.o -c ../bio/std/sff/read.d [180/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_multireader.d.o -c ../bio/std/hts/bam/multireader.d [181/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_maf_parser.d.o -c ../bio/std/maf/parser.d [182/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_sff_utils_roundup.d.o -c ../bio/std/sff/utils/roundup.d [183/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_maf_reader.d.o -c ../bio/std/maf/reader.d [184/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/_build_libbiod-0.2.3+git20191120.b8eecef_obj-x86_64-linux-gnu_utmain.d.o -c /build/libbiod-0.2.3+git20191120.b8eecef/obj-x86_64-linux-gnu/utmain.d [185/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_sff_writer.d.o -c ../bio/std/sff/writer.d [186/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_sff_readrange.d.o -c ../bio/std/sff/readrange.d [187/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_sam_reader.d.o -c ../bio/std/hts/sam/reader.d [188/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_read.d.o -c ../bio/std/hts/bam/read.d [189/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_sff_reader.d.o -c ../bio/std/sff/reader.d [190/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_iontorrent_flowcall.d.o -c ../bio/std/hts/iontorrent/flowcall.d [191/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_tagvalue.d.o -c ../bio/std/hts/bam/tagvalue.d [192/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_sam_utils_recordparser.d.o -c ../bio/std/hts/sam/utils/recordparser.d sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(52): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(60): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable sam_alignment.rl(69): Warning: statement is not reachable sam_alignment.rl(76): Warning: statement is not reachable sam_alignment.rl(77): Warning: statement is not reachable sam_alignment.rl(82): Warning: statement is not reachable sam_alignment.rl(83): Warning: statement is not reachable sam_alignment.rl(131): Warning: statement is not reachable sam_alignment.rl(132): Warning: statement is not reachable sam_alignment.rl(163): Warning: statement is not reachable sam_alignment.rl(164): Warning: statement is not reachable sam_alignment.rl(176): Warning: statement is not reachable sam_alignment.rl(177): Warning: statement is not reachable sam_alignment.rl(188): Warning: statement is not reachable sam_alignment.rl(189): Warning: statement is not reachable sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(222): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(252): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable sam_alignment.rl(409): Warning: statement is not reachable sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable sam_alignment.rl(76): Warning: statement is not reachable sam_alignment.rl(82): Warning: statement is not reachable sam_alignment.rl(131): Warning: statement is not reachable sam_alignment.rl(163): Warning: statement is not reachable sam_alignment.rl(176): Warning: statement is not reachable sam_alignment.rl(188): Warning: statement is not reachable sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable [193/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_thirdparty_msgpack.d.o -c ../bio/std/hts/thirdparty/msgpack.d ../bio/std/hts/thirdparty/msgpack.d(2033): Deprecation: integral promotion not done for -header, use '-preview=intpromote' switch or -cast(int)(header) ../bio/std/hts/thirdparty/msgpack.d(2033): Deprecation: integral promotion not done for -header, use '-preview=intpromote' switch or -cast(int)(header) ../bio/std/hts/thirdparty/msgpack.d(2033): Deprecation: integral promotion not done for -cast(byte)-header, use '-preview=intpromote' switch or -cast(int)(cast(byte)-header) ../bio/std/hts/thirdparty/msgpack.d(2033): Deprecation: integral promotion not done for -header, use '-preview=intpromote' switch or -cast(int)(header) ../bio/std/hts/thirdparty/msgpack.d(2033): Deprecation: integral promotion not done for -cast(short)-header, use '-preview=intpromote' switch or -cast(int)(cast(short)-header) ../bio/std/hts/thirdparty/msgpack.d(2033): Deprecation: integral promotion not done for -header, use '-preview=intpromote' switch or -cast(int)(header) ../bio/std/hts/thirdparty/msgpack.d(1116): Deprecation: returning this.vecList_ escapes a reference to parameter this ../bio/std/hts/thirdparty/msgpack.d(1116): perhaps annotate the parameter with return [194/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_validation_alignment.d.o -c ../bio/std/hts/bam/validation/alignment.d [195/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_sam_header.d.o -c ../bio/std/hts/sam/header.d [196/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_sam_utils_fastrecordparser.d.o -c ../bio/std/hts/sam/utils/fastrecordparser.d sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable sam_alignment.rl(76): Warning: statement is not reachable sam_alignment.rl(82): Warning: statement is not reachable sam_alignment.rl(131): Warning: statement is not reachable sam_alignment.rl(163): Warning: statement is not reachable sam_alignment.rl(176): Warning: statement is not reachable sam_alignment.rl(188): Warning: statement is not reachable sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable sam_alignment.rl(52): Warning: statement is not reachable sam_alignment.rl(60): Warning: statement is not reachable sam_alignment.rl(69): Warning: statement is not reachable sam_alignment.rl(77): Warning: statement is not reachable sam_alignment.rl(83): Warning: statement is not reachable sam_alignment.rl(132): Warning: statement is not reachable sam_alignment.rl(164): Warning: statement is not reachable sam_alignment.rl(177): Warning: statement is not reachable sam_alignment.rl(189): Warning: statement is not reachable sam_alignment.rl(222): Warning: statement is not reachable sam_alignment.rl(252): Warning: statement is not reachable sam_alignment.rl(409): Warning: statement is not reachable sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable sam_alignment.rl(76): Warning: statement is not reachable sam_alignment.rl(82): Warning: statement is not reachable sam_alignment.rl(131): Warning: statement is not reachable sam_alignment.rl(163): Warning: statement is not reachable sam_alignment.rl(176): Warning: statement is not reachable sam_alignment.rl(188): Warning: statement is not reachable sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable [197/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_utils_samheadermerger.d.o -c ../bio/std/hts/utils/samheadermerger.d ../bio/std/hts/utils/samheadermerger.d(217): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/std/hts/utils/samheadermerger.d(222): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/std/hts/utils/samheadermerger.d(217): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/std/hts/utils/samheadermerger.d(222): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. [198/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/test_unittests.d.o -c ../test/unittests.d [199/199] ldc2 -of=biod_test biod_test.p/contrib_undead_cstream.d.o biod_test.p/contrib_undead_doformat.d.o biod_test.p/contrib_undead_internal_file.d.o biod_test.p/contrib_undead_stream.d.o biod_test.p/contrib_undead_utf.d.o biod_test.p/bio_core_base.d.o biod_test.p/bio_core_bgzf_block.d.o biod_test.p/bio_core_bgzf_chunk.d.o biod_test.p/bio_core_bgzf_compress.d.o biod_test.p/bio_core_bgzf_constants.d.o biod_test.p/bio_core_bgzf_inputstream.d.o biod_test.p/bio_core_bgzf_outputstream.d.o biod_test.p/bio_core_bgzf_virtualoffset.d.o biod_test.p/bio_core_call.d.o biod_test.p/bio_core_decompress.d.o biod_test.p/bio_core_genotype.d.o biod_test.p/bio_core_kmer.d.o biod_test.p/bio_core_region.d.o biod_test.p/bio_core_sequence.d.o biod_test.p/bio_core_tinymap.d.o biod_test.p/bio_core_utils_algo.d.o biod_test.p/bio_core_utils_bylinefast.d.o biod_test.p/bio_core_utils_exception.d.o biod_test.p/bio_core_utils_format.d.o biod_test.p/bio_core_utils_memoize.d.o biod_test.p/bio_core_utils_outbuffer.d.o biod_test.p/bio_core_utils_range.d.o biod_test.p/bio_core_utils_roundbuf.d.o biod_test.p/bio_core_utils_stream.d.o biod_test.p/bio_core_utils_switchendianness.d.o biod_test.p/bio_core_utils_tmpfile.d.o biod_test.p/bio_core_utils_zlib.d.o biod_test.p/bio_std_experimental_hts_bam_header.d.o biod_test.p/bio_std_experimental_hts_bam_reader.d.o biod_test.p/bio_std_experimental_hts_bam_writer.d.o biod_test.p/bio_std_experimental_hts_bgzf.d.o biod_test.p/bio_std_experimental_hts_bgzf_writer.d.o biod_test.p/bio_std_experimental_hts_constants.d.o biod_test.p/bio_std_experimental_hts_hashing.d.o biod_test.p/bio_std_experimental_hts_logger.d.o biod_test.p/bio_std_experimental_hts_pileup.d.o biod_test.p/bio_std_experimental_hts_reads.d.o biod_test.p/bio_std_experimental_hts_unpack.d.o biod_test.p/bio_std_file_fai.d.o biod_test.p/bio_std_file_fasta.d.o biod_test.p/bio_std_file_fastq.d.o biod_test.p/bio_std_genotype_maf.d.o biod_test.p/bio_std_genotype_snp.d.o biod_test.p/bio_std_hts_bam_abstractreader.d.o biod_test.p/bio_std_hts_bam_bai_bin.d.o biod_test.p/bio_std_hts_bam_baifile.d.o biod_test.p/bio_std_hts_bam_bai_indexing.d.o biod_test.p/bio_std_hts_bam_baseinfo.d.o biod_test.p/bio_std_hts_bam_cigar.d.o biod_test.p/bio_std_hts_bam_constants.d.o biod_test.p/bio_std_hts_bam_md_core.d.o biod_test.p/bio_std_hts_bam_md_operation.d.o biod_test.p/bio_std_hts_bam_md_parse.d.o biod_test.p/bio_std_hts_bam_md_reconstruct.d.o biod_test.p/bio_std_hts_bam_multireader.d.o biod_test.p/bio_std_hts_bam_pileup.d.o biod_test.p/bio_std_hts_bam_randomaccessmanager.d.o biod_test.p/bio_std_hts_bam_read.d.o biod_test.p/bio_std_hts_bam_reader.d.o biod_test.p/bio_std_hts_bam_readrange.d.o biod_test.p/bio_std_hts_bam_reference.d.o biod_test.p/bio_std_hts_bam_referenceinfo.d.o biod_test.p/bio_std_hts_bam_region.d.o biod_test.p/bio_std_hts_bam_splitter.d.o biod_test.p/bio_std_hts_bam_tagvalue.d.o biod_test.p/bio_std_hts_bam_validation_alignment.d.o biod_test.p/bio_std_hts_bam_validation_samheader.d.o biod_test.p/bio_std_hts_bam_writer.d.o biod_test.p/bio_std_hts_iontorrent_flowcall.d.o biod_test.p/bio_std_hts_iontorrent_flowindex.d.o biod_test.p/bio_std_hts_sam_header.d.o biod_test.p/bio_std_hts_sam_reader.d.o biod_test.p/bio_std_hts_sam_utils_fastrecordparser.d.o biod_test.p/bio_std_hts_sam_utils_recordparser.d.o biod_test.p/bio_std_hts_snpcallers_maq.d.o biod_test.p/bio_std_hts_snpcallers_simple.d.o biod_test.p/bio_std_hts_thirdparty_msgpack.d.o biod_test.p/bio_std_hts_utils_array.d.o biod_test.p/bio_std_hts_utils_graph.d.o biod_test.p/bio_std_hts_utils_samheadermerger.d.o biod_test.p/bio_std_hts_utils_value.d.o biod_test.p/bio_std_maf_block.d.o biod_test.p/bio_std_maf_parser.d.o biod_test.p/bio_std_maf_reader.d.o biod_test.p/bio_std_range_splitter.d.o biod_test.p/bio_std_sff_constants.d.o biod_test.p/bio_std_sff_index.d.o biod_test.p/bio_std_sff_read.d.o biod_test.p/bio_std_sff_reader.d.o biod_test.p/bio_std_sff_readrange.d.o biod_test.p/bio_std_sff_utils_roundup.d.o biod_test.p/bio_std_sff_writer.d.o biod_test.p/test_unittests.d.o biod_test.p/_build_libbiod-0.2.3+git20191120.b8eecef_obj-x86_64-linux-gnu_utmain.d.o -L=--allow-shlib-undefined -link-defaultlib-shared -O -g -release -wi -L=-z -L=relro -L=-lz debian/rules override_dh_auto_test make[1]: Entering directory '/build/libbiod-0.2.3+git20191120.b8eecef' # we ignore test failures for now, the tests fail to find a few files correctly dh_auto_test cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 MESON_TESTTHREADS=15 ninja test [0/1] Running all tests. The output from the failed tests: 1/1 biod_tests FAIL 1.56s (exit status 1) --- command --- 19:37:38 /build/libbiod-0.2.3+git20191120.b8eecef/obj-x86_64-linux-gnu/biod_test --DRT-gcopt=gc:precise disable:1 cleanup:none --- stdout --- /usr/lib/ldc/x86_64-linux-gnu/include/d/std/file.d(2051): [unittest] test/data/BXD_geno.txt.gz: No such file or directory --- stderr --- std.file.FileException@/usr/lib/ldc/x86_64-linux-gnu/include/d/std/file.d(2051): test/data/BXD_geno.txt.gz: No such file or directory ---------------- /usr/lib/ldc/x86_64-linux-gnu/include/d/std/file.d:283 @trusted bool std.file.cenforce!(bool).cenforce(bool, scope const(char)[], scope const(char)*, immutable(char)[], ulong) [0x5564790c6566] decompress.d:2051 @safe uint std.file.getAttributes!(immutable(char)[]).getAttributes(immutable(char)[]) [0x5564790c6412] /usr/lib/ldc/x86_64-linux-gnu/include/d/std/file.d:2527 [0x5564790c58f0] decompress.d:105 [0x5564790c5804] decompress.d:0 [0x5564790c69a9] ??:? int core.runtime.runModuleUnitTests().__foreachbody2(object.ModuleInfo*) [0x7f201988b328] ??:? int rt.minfo.moduleinfos_apply(scope int delegate(immutable(object.ModuleInfo*))).__foreachbody2(ref rt.sections_elf_shared.DSO) [0x7f20198b8a6a] ??:? int rt.sections_elf_shared.DSO.opApply(scope int delegate(ref rt.sections_elf_shared.DSO)) [0x7f20198b9ce8] ??:? int rt.minfo.moduleinfos_apply(scope int delegate(immutable(object.ModuleInfo*))) [0x7f20198b89fb] ??:? int object.ModuleInfo.opApply(scope int delegate(object.ModuleInfo*)) [0x7f20198a4bee] ??:? runModuleUnitTests [0x7f201988b1d4] ??:? void rt.dmain2._d_run_main2(char[][], ulong, extern (C) int function(char[][])*).runAll() [0x7f20198af04a] ??:? _d_run_main2 [0x7f20198aee97] ??:? _d_run_main [0x7f20198aeced] ??:? __libc_start_main [0x7f20194a6d09] ??:? [0x55647908ecf9] Running unittests... **** Calling GC **** Past calling GC 1/37 modules FAILED unittests ------- Summary of Failures: 1/1 biod_tests FAIL 1.56s (exit status 1) Ok: 0 Expected Fail: 0 Fail: 1 Unexpected Pass: 0 Skipped: 0 Timeout: 0 Full log written to /build/libbiod-0.2.3+git20191120.b8eecef/obj-x86_64-linux-gnu/meson-logs/testlog.txt FAILED: meson-test /usr/bin/meson test --no-rebuild --print-errorlogs ninja: build stopped: subcommand failed. cd obj-x86_64-linux-gnu && tail -v -n \+0 meson-logs/testlog.txt ==> meson-logs/testlog.txt <== Log of Meson test suite run on 2021-10-29T07:37:38.884388 Inherited environment: DEB_HOST_GNU_SYSTEM='linux-gnu' SUDO_GID='111' DFLAGS='-O -g -release -wi' DEB_BUILD_ARCH_BITS='64' DEB_TARGET_GNU_CPU='x86_64' MAIL='/var/mail/root' DEB_HOST_ARCH_OS='linux' LANGUAGE='en_US:en' USER='pbuilder1' CXXFLAGS='-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong -Wformat -Werror=format-security' DEB_BUILD_GNU_TYPE='x86_64-linux-gnu' BUILDUSERNAME='pbuilder1' DEB_TARGET_MULTIARCH='x86_64-linux-gnu' OBJCFLAGS='-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong -Wformat -Werror=format-security' DH_INTERNAL_OPTIONS='-O--buildsystem=meson' DEB_BUILD_ARCH_CPU='amd64' SHLVL='1' DEB_HOST_ARCH_LIBC='gnu' DEB_HOST_ARCH_ABI='base' OLDPWD='/' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' HOME='/nonexistent/first-build' DEB_BUILD_ARCH_ENDIAN='little' LDFLAGS='-Wl,-z,relro' DEB_TARGET_ARCH_BITS='64' DEB_BUILD_GNU_SYSTEM='linux-gnu' MAKEFLAGS='w' PBUILDER_OPERATION='build' DEB_BUILD_ARCH_OS='linux' DEB_TARGET_GNU_TYPE='x86_64-linux-gnu' SUDO_UID='106' PBUILDER_PKGDATADIR='/usr/share/pbuilder' DEB_TARGET_ARCH_CPU='amd64' DC='ldc2' LOGNAME='pbuilder1' DEB_BUILD_ARCH_LIBC='gnu' DEB_BUILD_ARCH_ABI='base' PBUILDER_SYSCONFDIR='/etc' _='/usr/bin/unshare' DEB_HOST_ARCH='amd64' DEB_TARGET_ARCH_ENDIAN='little' TERM='unknown' DH_INTERNAL_OVERRIDE='dh_auto_test' DEB_HOST_GNU_CPU='x86_64' DEB_TARGET_GNU_SYSTEM='linux-gnu' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' INVOCATION_ID='0d713cac185b43f890ecaf0facbd61a0' MESON_TESTTHREADS='15' DEB_TARGET_ARCH_OS='linux' CFLAGS='-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong -Wformat -Werror=format-security' MAKELEVEL='2' DEB_HOST_MULTIARCH='x86_64-linux-gnu' SOURCE_DATE_EPOCH='1579034133' FCFLAGS='-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong' OBJCXXFLAGS='-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong -Wformat -Werror=format-security' LANG='C' LD_PRELOAD='' DEB_TARGET_ARCH_LIBC='gnu' DEB_TARGET_ARCH_ABI='base' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.G7Z0qrWn8q/pbuilderrc_S43B --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.G7Z0qrWn8q/b1 --logfile b1/build.log libbiod_0.2.3+git20191120.b8eecef-2.dsc' CPPFLAGS='-Wdate-time -D_FORTIFY_SOURCE=2' DEBIAN_FRONTEND='noninteractive' DH_INTERNAL_BUILDFLAGS='1' SHELL='/bin/bash' DEB_HOST_ARCH_BITS='64' DEB_BUILD_ARCH='amd64' SUDO_USER='jenkins' DEB_BUILD_GNU_CPU='x86_64' DEB_HOST_GNU_TYPE='x86_64-linux-gnu' LC_ALL='C.UTF-8' PWD='/build/libbiod-0.2.3+git20191120.b8eecef/obj-x86_64-linux-gnu' DEB_HOST_ARCH_CPU='amd64' DEB_RULES_REQUIRES_ROOT='binary-targets' FFLAGS='-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong' DEB_BUILD_MULTIARCH='x86_64-linux-gnu' MFLAGS='-w' TZ='/usr/share/zoneinfo/Etc/GMT+12' GCJFLAGS='-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong' PBCURRENTCOMMANDLINEOPERATION='build' DEB_HOST_ARCH_ENDIAN='little' DEB_TARGET_ARCH='amd64' 1/1 biod_tests FAIL 1.56s (exit status 1) --- command --- 19:37:38 /build/libbiod-0.2.3+git20191120.b8eecef/obj-x86_64-linux-gnu/biod_test --DRT-gcopt=gc:precise disable:1 cleanup:none --- stdout --- /usr/lib/ldc/x86_64-linux-gnu/include/d/std/file.d(2051): [unittest] test/data/BXD_geno.txt.gz: No such file or directory --- stderr --- std.file.FileException@/usr/lib/ldc/x86_64-linux-gnu/include/d/std/file.d(2051): test/data/BXD_geno.txt.gz: No such file or directory ---------------- /usr/lib/ldc/x86_64-linux-gnu/include/d/std/file.d:283 @trusted bool std.file.cenforce!(bool).cenforce(bool, scope const(char)[], scope const(char)*, immutable(char)[], ulong) [0x5564790c6566] decompress.d:2051 @safe uint std.file.getAttributes!(immutable(char)[]).getAttributes(immutable(char)[]) [0x5564790c6412] /usr/lib/ldc/x86_64-linux-gnu/include/d/std/file.d:2527 [0x5564790c58f0] decompress.d:105 [0x5564790c5804] decompress.d:0 [0x5564790c69a9] ??:? int core.runtime.runModuleUnitTests().__foreachbody2(object.ModuleInfo*) [0x7f201988b328] ??:? int rt.minfo.moduleinfos_apply(scope int delegate(immutable(object.ModuleInfo*))).__foreachbody2(ref rt.sections_elf_shared.DSO) [0x7f20198b8a6a] ??:? int rt.sections_elf_shared.DSO.opApply(scope int delegate(ref rt.sections_elf_shared.DSO)) [0x7f20198b9ce8] ??:? int rt.minfo.moduleinfos_apply(scope int delegate(immutable(object.ModuleInfo*))) [0x7f20198b89fb] ??:? int object.ModuleInfo.opApply(scope int delegate(object.ModuleInfo*)) [0x7f20198a4bee] ??:? runModuleUnitTests [0x7f201988b1d4] ??:? void rt.dmain2._d_run_main2(char[][], ulong, extern (C) int function(char[][])*).runAll() [0x7f20198af04a] ??:? _d_run_main2 [0x7f20198aee97] ??:? _d_run_main [0x7f20198aeced] ??:? __libc_start_main [0x7f20194a6d09] ??:? [0x55647908ecf9] Running unittests... **** Calling GC **** Past calling GC 1/37 modules FAILED unittests ------- Summary of Failures: 1/1 biod_tests FAIL 1.56s (exit status 1) Ok: 0 Expected Fail: 0 Fail: 1 Unexpected Pass: 0 Skipped: 0 Timeout: 0 dh_auto_test: error: cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 MESON_TESTTHREADS=15 ninja test returned exit code 1 make[1]: [debian/rules:17: override_dh_auto_test] Error 25 (ignored) make[1]: Leaving directory '/build/libbiod-0.2.3+git20191120.b8eecef' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --buildsystem=meson dh_testroot -O--buildsystem=meson dh_prep -O--buildsystem=meson dh_auto_install -O--buildsystem=meson cd obj-x86_64-linux-gnu && DESTDIR=/build/libbiod-0.2.3\+git20191120.b8eecef/debian/tmp LC_ALL=C.UTF-8 ninja install [0/1] Installing files. Installing subdir /build/libbiod-0.2.3+git20191120.b8eecef/bio to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/sff/writer.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/sff Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/sff/readrange.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/sff Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/sff/reader.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/sff Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/sff/read.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/sff Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/sff/index.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/sff Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/sff/constants.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/sff Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/sff/utils/roundup.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/sff/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/range/splitter.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/range Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/maf/reader.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/maf Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/maf/parser.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/maf Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/maf/block.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/maf Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/utils/value.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/utils/samheadermerger.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/utils/graph.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/utils/array.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/thirdparty/msgpack.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/thirdparty Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/snpcallers/simple.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/snpcallers Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/snpcallers/maq.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/snpcallers Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/sam/reader.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/sam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/sam/header.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/sam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/sam/utils/recordparser.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/sam/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/sam/utils/fastrecordparser.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/sam/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/iontorrent/flowindex.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/iontorrent Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/iontorrent/flowcall.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/iontorrent Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/writer.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/tagvalue.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/splitter.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/region.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/referenceinfo.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/reference.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/readrange.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/reader.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/read.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/randomaccessmanager.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/pileup.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/multireader.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/constants.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/cigar.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/baseinfo.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/baifile.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/abstractreader.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/validation/samheader.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam/validation Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/validation/alignment.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam/validation Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/md/reconstruct.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam/md Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/md/parse.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam/md Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/md/operation.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam/md Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/md/core.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam/md Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/bai/indexing.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam/bai Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/bai/bin.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/hts/bam/bai Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/genotype/snp.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/genotype Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/genotype/maf.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/genotype Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/file/fastq.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/file Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/file/fasta.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/file Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/file/fai.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/file Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/unpack.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/experimental/hts Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/reads.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/experimental/hts Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/pileup.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/experimental/hts Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/logger.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/experimental/hts Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/hashing.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/experimental/hts Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/constants.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/experimental/hts Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/bgzf_writer.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/experimental/hts Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/bgzf.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/experimental/hts Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/README.md to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/experimental/hts Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/bam/writer.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/experimental/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/bam/reader.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/experimental/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/bam/header.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/std/experimental/hts/bam Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/etc/ragel/sam_alignment.rl to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/etc/ragel Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/etc/ragel/region.rl to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/etc/ragel Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/etc/ragel/maf_block.rl to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/etc/ragel Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/etc/ragel/Makefile to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/etc/ragel Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/etc/ragel/workarounds/fix_switch_case_fallthrough.sh to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/etc/ragel/workarounds Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/etc/ragel/workarounds/fix_static_const.sh to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/etc/ragel/workarounds Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/tinymap.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/sequence.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/region.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/kmer.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/genotype.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/decompress.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/call.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/base.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/zlib.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/tmpfile.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/switchendianness.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/stream.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/roundbuf.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/range.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/outbuffer.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/memoize.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/format.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/exception.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/bylinefast.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/algo.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/utils Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/bgzf/virtualoffset.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/bgzf Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/bgzf/outputstream.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/bgzf Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/bgzf/inputstream.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/bgzf Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/bgzf/constants.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/bgzf Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/bgzf/compress.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/bgzf Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/bgzf/chunk.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/bgzf Installing /build/libbiod-0.2.3+git20191120.b8eecef/bio/core/bgzf/block.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/bio/core/bgzf Installing subdir /build/libbiod-0.2.3+git20191120.b8eecef/contrib/undead to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/contrib/undead Installing /build/libbiod-0.2.3+git20191120.b8eecef/contrib/undead/utf.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/contrib/undead Installing /build/libbiod-0.2.3+git20191120.b8eecef/contrib/undead/stream.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/contrib/undead Installing /build/libbiod-0.2.3+git20191120.b8eecef/contrib/undead/doformat.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/contrib/undead Installing /build/libbiod-0.2.3+git20191120.b8eecef/contrib/undead/cstream.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/contrib/undead Installing /build/libbiod-0.2.3+git20191120.b8eecef/contrib/undead/README.md to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/contrib/undead Installing /build/libbiod-0.2.3+git20191120.b8eecef/contrib/undead/LICENSE to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/contrib/undead Installing /build/libbiod-0.2.3+git20191120.b8eecef/contrib/undead/internal/file.d to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/include/d/bio/contrib/undead/internal Installing libbiod.so.0.2.3 to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/lib/x86_64-linux-gnu Installing libbiod.a to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/lib/x86_64-linux-gnu Installing /build/libbiod-0.2.3+git20191120.b8eecef/obj-x86_64-linux-gnu/meson-private/biod.pc to /build/libbiod-0.2.3+git20191120.b8eecef/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig dh_install -O--buildsystem=meson dh_installdocs -O--buildsystem=meson dh_installchangelogs -O--buildsystem=meson dh_installinit -O--buildsystem=meson dh_installsystemduser -O--buildsystem=meson dh_perl -O--buildsystem=meson dh_link -O--buildsystem=meson dh_strip_nondeterminism -O--buildsystem=meson dh_compress -O--buildsystem=meson dh_fixperms -O--buildsystem=meson debian/rules override_dh_missing make[1]: Entering directory '/build/libbiod-0.2.3+git20191120.b8eecef' dh_missing --fail-missing make[1]: Leaving directory '/build/libbiod-0.2.3+git20191120.b8eecef' dh_dwz -O--buildsystem=meson dh_strip -O--buildsystem=meson dh_makeshlibs -O--buildsystem=meson dh_shlibdeps -O--buildsystem=meson dpkg-shlibdeps: warning: symbol _D3std11parallelism__T4TaskS_D3bioQBg12experimental3hts11bgzf_writer16bgzfCompressFuncFAhiQdDFQhQjZvZSQDw8typecons__T5TupleTQBlTQBpTDFQBvQByZvZQBaTQCiTiTQCoTQzZQFi6__initZ used by debian/libbiod0/usr/lib/x86_64-linux-gnu/libbiod.so.0.2.3 found in none of the libraries dpkg-shlibdeps: warning: symbol _D3std11parallelism__T4TaskS_D3bioQBg12experimental3hts11bgzf_writer16bgzfCompressFuncFAhiQdDFQhQjZvZSQDw8typecons__T5TupleTQBlTQBpTDFQBvQByZvZQBaTQCiTiTQCoTQzZQFi10yieldForceMFNcNdNeZQDf used by debian/libbiod0/usr/lib/x86_64-linux-gnu/libbiod.so.0.2.3 found in none of the libraries dpkg-shlibdeps: warning: symbol _D4core8internal5array8equality__T8__equalsTxPS3std11parallelism__T4TaskS_D3bioQBg12experimental3hts11bgzf_writer16bgzfCompressFuncFAhiQdDFQhQjZvZSQDw8typecons__T5TupleTQBlTQBpTDFQBvQByZvZQBaTQCiTiTQCoTQzZQFiTxQGjZQGyFNaNbNiNfMAxQHcMQgZb used by debian/libbiod0/usr/lib/x86_64-linux-gnu/libbiod.so.0.2.3 found in none of the libraries dh_installdeb -O--buildsystem=meson dh_gencontrol -O--buildsystem=meson dpkg-gencontrol: warning: Depends field of package libbiod-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=meson dh_builddeb -O--buildsystem=meson dpkg-deb: building package 'libbiod-dev' in '../libbiod-dev_0.2.3+git20191120.b8eecef-2_amd64.deb'. dpkg-deb: building package 'libbiod0' in '../libbiod0_0.2.3+git20191120.b8eecef-2_amd64.deb'. dpkg-deb: building package 'libbiod0-dbgsym' in '../libbiod0-dbgsym_0.2.3+git20191120.b8eecef-2_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libbiod_0.2.3+git20191120.b8eecef-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2020155 and its subdirectories I: Current time: Fri Oct 29 07:38:24 -12 2021 I: pbuilder-time-stamp: 1635536304 Fri Oct 29 19:38:24 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Fri Oct 29 19:38:24 UTC 2021 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Fri Oct 29 19:41:30 UTC 2021 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Fri Oct 29 19:41:30 UTC 2021 I: libbiod_0.2.3+git20191120.b8eecef-2_amd64.changes: Format: 1.8 Date: Tue, 14 Jan 2020 21:35:33 +0100 Source: libbiod Binary: libbiod-dev libbiod0 libbiod0-dbgsym Architecture: amd64 Version: 0.2.3+git20191120.b8eecef-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libbiod-dev - bioinformatics library in D (development files) libbiod0 - bioinformatics library in D Closes: 948918 Changes: libbiod (0.2.3+git20191120.b8eecef-2) unstable; urgency=medium . * Restrict architectures to amd64 and arm64 where the package really builds Closes: #948918 Checksums-Sha1: acd4098fd8b4c74741e2c05c17274e73b9f9264f 1202268 libbiod-dev_0.2.3+git20191120.b8eecef-2_amd64.deb cc7a2b9a122201cb641a21ddcd21ad6748c4b831 2797392 libbiod0-dbgsym_0.2.3+git20191120.b8eecef-2_amd64.deb dcb49c1566677334d9c7134066e6b3a0446a1fbe 582136 libbiod0_0.2.3+git20191120.b8eecef-2_amd64.deb bf103d9e7acdd517cfd6d7e39b33e6e369ee5ee7 6388 libbiod_0.2.3+git20191120.b8eecef-2_amd64.buildinfo Checksums-Sha256: 72716b3ede17b71cf4200127c356cfa12e672bb4c9c800b3a2db0280a395c518 1202268 libbiod-dev_0.2.3+git20191120.b8eecef-2_amd64.deb 1f463dbbf5063f77701867f1a54730a8daa256923e8fa1f33c495cfa82563b35 2797392 libbiod0-dbgsym_0.2.3+git20191120.b8eecef-2_amd64.deb 9ba936eec1ac9ed92d584178dc4e40cc02bb3cdc0675ce095f110347068dd432 582136 libbiod0_0.2.3+git20191120.b8eecef-2_amd64.deb 1d8f668c37e2bb101d6e5095f6e6e2c1d2614fe2284c675ae2f852cf09764457 6388 libbiod_0.2.3+git20191120.b8eecef-2_amd64.buildinfo Files: e6eeb91e1da7f636eb11a4b2f07c9d19 1202268 libdevel optional libbiod-dev_0.2.3+git20191120.b8eecef-2_amd64.deb dee2ea6d780ad8fcf0d621047dd327cd 2797392 debug optional libbiod0-dbgsym_0.2.3+git20191120.b8eecef-2_amd64.deb 0e32a809a5979e0957941d1de65ba7f6 582136 libs optional libbiod0_0.2.3+git20191120.b8eecef-2_amd64.deb 65430e2e7e9ad548434d57f933062a6f 6388 science optional libbiod_0.2.3+git20191120.b8eecef-2_amd64.buildinfo Fri Oct 29 19:41:31 UTC 2021 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.G7Z0qrWn8q/libbiod_0.2.3+git20191120.b8eecef-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.G7Z0qrWn8q/libbiod_0.2.3+git20191120.b8eecef-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.G7Z0qrWn8q/libbiod_0.2.3+git20191120.b8eecef-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.G7Z0qrWn8q/b1/libbiod_0.2.3+git20191120.b8eecef-2_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.G7Z0qrWn8q/b2/libbiod_0.2.3+git20191120.b8eecef-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.357s) 0.357s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.079s) 0.079s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Fri Oct 29 19:41:32 UTC 2021 I: found no differences in the changes files, and a .buildinfo file also exists. Fri Oct 29 19:41:32 UTC 2021 I: libbiod from bullseye built successfully and reproducibly on amd64. Fri Oct 29 19:41:34 UTC 2021 I: Submitting .buildinfo files to external archives: Fri Oct 29 19:41:34 UTC 2021 I: Submitting 8.0K b1/libbiod_0.2.3+git20191120.b8eecef-2_amd64.buildinfo.asc Fri Oct 29 19:41:36 UTC 2021 I: Submitting 8.0K b2/libbiod_0.2.3+git20191120.b8eecef-2_amd64.buildinfo.asc Fri Oct 29 19:41:36 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Oct 29 19:41:36 UTC 2021 I: Done submitting .buildinfo files. Fri Oct 29 19:41:36 UTC 2021 I: Removing signed libbiod_0.2.3+git20191120.b8eecef-2_amd64.buildinfo.asc files: removed './b1/libbiod_0.2.3+git20191120.b8eecef-2_amd64.buildinfo.asc' removed './b2/libbiod_0.2.3+git20191120.b8eecef-2_amd64.buildinfo.asc'