Fri Jan 21 01:38:21 UTC 2022 I: starting to build lefse/bullseye/amd64 on jenkins on '2022-01-21 01:38' Fri Jan 21 01:38:21 UTC 2022 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_27/53895/console.log Fri Jan 21 01:38:21 UTC 2022 I: Downloading source for bullseye/lefse=1.0.8-3 --2022-01-21 01:38:21-- http://cdn-fastly.deb.debian.org/debian/pool/main/l/lefse/lefse_1.0.8-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1964 (1.9K) Saving to: ‘lefse_1.0.8-3.dsc’ 0K . 100% 115M=0s 2022-01-21 01:38:21 (115 MB/s) - ‘lefse_1.0.8-3.dsc’ saved [1964/1964] Fri Jan 21 01:38:21 UTC 2022 I: lefse_1.0.8-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: lefse Binary: lefse Architecture: all Version: 1.0.8-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://bitbucket.org/biobakery/biobakery/wiki/lefse Standards-Version: 4.4.0 Vcs-Browser: https://salsa.debian.org/med-team/lefse Vcs-Git: https://salsa.debian.org/med-team/lefse.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12), python3-all, dh-python Package-List: lefse deb science optional arch=all Checksums-Sha1: 2e0cfc1bb963544731b8da40f51264b9a3c12db9 52202 lefse_1.0.8.orig.tar.gz 77585797b327dbaad4570f1e7fef7e9348051801 67256 lefse_1.0.8-3.debian.tar.xz Checksums-Sha256: 347411fde3458e0d59f4d938ee1ad4b329ecf605e99cb6c1c02220ab9b20c6e2 52202 lefse_1.0.8.orig.tar.gz 382d50df4e2001284e03609d356a567d3adcfa709f1d0e07b8e3329db59913f1 67256 lefse_1.0.8-3.debian.tar.xz Files: cb710a64f312ed1e023a1bff200182cf 52202 lefse_1.0.8.orig.tar.gz 3adc2b29ca748f2a3aff526aa9ef154e 67256 lefse_1.0.8-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCgAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl15SK0OHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtGXRQ//buCVb7zeIfiV/fVj/wskb76CJvMPqsgWxU0M 6LefTxPuRV5KnZTncaYiU8oATDodP682CQYVUQl4QE1UJcUUJqo9jQZoAa169xSC FQu6U0M0r8cj9NLKfSLkljBCAfDlnIRb2mdXZM9SstgIC9uFoNtIIaSKHHeCgATc f19k7kbkawwSK0hGwLMgvyjDbrincPtzpqHeTeVMMhyLxY4V/E7opx2CoAaPW0wk 1qwpSbztephbF7RxXxFQ6wmCXrGYxTTxPgkVBjpoHYypcjF+Ai0p+KqXqw+hRKdD 3fFfGlDXlJCuyBHXYhUBKpKcVbQh5qeuQBRw9UuGY91XoaotMjj6OOOXPqYRn4Dk HispimSRMckItuCC4OIg1egm84EG+4Z4Ia3GBHFSmXoF2F7YWvLZQkvImUAiFn7s gXmnDjNaM/wHZzKVN8CIBiRFtlD11GNpKdzS3fCmzDdenzKf532wVaVjm/0RsEPr n1m7yDaRyOvINgav6LsSNGaW+jOrQSpSYt7GW3INnfQRHbUi7OsYJaHgZUy0k0uC ZKhVX8f4tuN5bOZ7zZcqsmB5r27Y4Uq6HHki32ifoy9LwX0un2G40Go85mBfunTg M9YUQlbKMHbXnPslgu6spivyibNG+O8/ACZBQL7qnnx1qa71Qwwn3o+hd9/gvUTy +EtcYjM= =jbZX -----END PGP SIGNATURE----- Fri Jan 21 01:38:21 UTC 2022 I: Checking whether the package is not for us Fri Jan 21 01:38:21 UTC 2022 I: Starting 1st build on remote node ionos1-amd64.debian.net. Fri Jan 21 01:38:21 UTC 2022 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Fri Jan 21 01:40:53 UTC 2022 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jan 20 13:38:24 -12 2022 I: pbuilder-time-stamp: 1642729104 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [lefse_1.0.8-3.dsc] I: copying [./lefse_1.0.8.orig.tar.gz] I: copying [./lefse_1.0.8-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.3pYOXTg8/trustedkeys.kbx': General error gpgv: Signature made Wed Sep 11 07:19:09 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./lefse_1.0.8-3.dsc dpkg-source: info: extracting lefse in lefse-1.0.8 dpkg-source: info: unpacking lefse_1.0.8.orig.tar.gz dpkg-source: info: unpacking lefse_1.0.8-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 2to3.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/219671/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='f8f4f964bb36434688485700ca2dc83b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='219671' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Z46rzalJpD/pbuilderrc_7bxy --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Z46rzalJpD/b1 --logfile b1/build.log lefse_1.0.8-3.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 5.10.0-10-amd64 #1 SMP Debian 5.10.84-1 (2021-12-08) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 4 08:25 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jul 28 07:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 28 07:09 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jul 28 07:09 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 28 07:09 more -rwsr-xr-x 1 root root 55528 Jul 28 07:09 mount -rwxr-xr-x 1 root root 18664 Jul 28 07:09 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jan 6 21:25 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jul 28 07:09 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 28 07:09 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 28 07:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/219671/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), python3-all, dh-python dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libpipeline1{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 47 newly installed, 0 to remove and 0 not upgraded. Need to get 24.1 MB of archives. After unpacking 90.2 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 python3-all amd64 3.9.2-3 [1056 B] Fetched 24.1 MB in 2s (15.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../1-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../3-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libpython3.9-minimal:amd64. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_amd64.deb ... Unpacking libpython3.9-minimal:amd64 (3.9.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../6-libexpat1_2.2.10-2_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_amd64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:amd64 (3.9.2-1) ... Setting up libexpat1:amd64 (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... 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Reading state information... fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/lefse-1.0.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lefse_1.0.8-3_source.changes dpkg-buildpackage: info: source package lefse dpkg-buildpackage: info: source version 1.0.8-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Shayan Doust dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python3 dh_clean debian/rules build dh build --with python3 dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3 dh_testroot dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/lefse-1.0.8' mkdir -p debian/lefse/usr/share/lefse cp -r lefsebiom debian/lefse/usr/share/lefse cp -a lefse.py debian/lefse/usr/share/lefse for i in format_input lefse2circlader plot_cladogram plot_features plot_res qiime2lefse run_lefse;\ do\ cp $i.py debian/lefse/usr/share/lefse/$i;\ dh_link /usr/share/lefse/$i /usr/bin/$i;\ done make[1]: Leaving directory '/build/lefse-1.0.8' dh_installdocs dh_installchangelogs dh_installman debian/rules override_dh_python3 make[1]: Entering directory '/build/lefse-1.0.8' dh_python3 --shebang=/usr/bin/python3 I: dh_python3 tools:114: replacing shebang in debian/lefse/usr/bin/run_lefse I: dh_python3 tools:114: replacing shebang in debian/lefse/usr/bin/qiime2lefse I: dh_python3 tools:114: replacing shebang in debian/lefse/usr/bin/plot_res I: dh_python3 tools:114: replacing shebang in debian/lefse/usr/bin/plot_features I: dh_python3 tools:114: replacing shebang in debian/lefse/usr/bin/plot_cladogram I: dh_python3 tools:114: replacing shebang in debian/lefse/usr/bin/lefse2circlader I: dh_python3 tools:114: replacing shebang in debian/lefse/usr/bin/format_input I: dh_python3 tools:114: replacing shebang in debian/lefse/usr/share/lefse/format_input I: dh_python3 tools:114: replacing shebang in debian/lefse/usr/share/lefse/lefse2circlader I: dh_python3 tools:114: replacing shebang in debian/lefse/usr/share/lefse/plot_cladogram I: dh_python3 tools:114: replacing shebang in debian/lefse/usr/share/lefse/plot_features I: dh_python3 tools:114: replacing shebang in debian/lefse/usr/share/lefse/plot_res I: dh_python3 tools:114: replacing shebang in debian/lefse/usr/share/lefse/qiime2lefse I: dh_python3 tools:114: replacing shebang in debian/lefse/usr/share/lefse/run_lefse make[1]: Leaving directory '/build/lefse-1.0.8' dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/lefse-1.0.8' dh_fixperms chmod -x debian/*/usr/share/lefse/lefsebiom/*.py debian/*/usr/share/lefse/lefse.py make[1]: Leaving directory '/build/lefse-1.0.8' dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'lefse' in '../lefse_1.0.8-3_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../lefse_1.0.8-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/219671 and its subdirectories I: Current time: Thu Jan 20 13:40:52 -12 2022 I: pbuilder-time-stamp: 1642729252 Fri Jan 21 01:40:53 UTC 2022 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Fri Jan 21 01:40:53 UTC 2022 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Fri Jan 21 01:41:17 UTC 2022 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Fri Jan 21 01:41:18 UTC 2022 I: lefse_1.0.8-3_amd64.changes: Format: 1.8 Date: Mon, 09 Sep 2019 21:01:50 +0200 Source: lefse Binary: lefse Architecture: all Version: 1.0.8-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Shayan Doust Description: lefse - determine features of organisms, clades, taxonomic units, genes Closes: 936836 Changes: lefse (1.0.8-3) unstable; urgency=medium . [ Shayan Doust ] * Team upload. * use 2to3 to port from python2 to python3 Closes: #936836 * Include an autopkgtest . [ Andreas Tille ] * debhelper-compat 12 * Standards-Version: 4.4.0 * Secure URI in copyright format * Fix installation of lefse.py * Depends: python3-rpy2, r-cran-coin, python3-matplotlib * Add manpages Checksums-Sha1: e1ad20f8ec28d8c762a979473a9eeacc00234a1e 55180 lefse_1.0.8-3_all.deb fb86fdc3fe10d69aa16e6abb6d88af8d7c367f50 5270 lefse_1.0.8-3_amd64.buildinfo Checksums-Sha256: de64a3ddf9ac4af22af0c9b340936bfdefe7c99a6e4e758aa011900c63487ef7 55180 lefse_1.0.8-3_all.deb 5e73d78a447331bfc9064c82a5686ef53748e6115486d20f42d75143fd98264c 5270 lefse_1.0.8-3_amd64.buildinfo Files: 57f0acfa6697eacdd95876c8161d549f 55180 science optional lefse_1.0.8-3_all.deb 31fc6057bc75de450ae6cc244cd64d72 5270 science optional lefse_1.0.8-3_amd64.buildinfo Fri Jan 21 01:41:19 UTC 2022 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.Z46rzalJpD/lefse_1.0.8-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.Z46rzalJpD/lefse_1.0.8-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.Z46rzalJpD/lefse_1.0.8-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.Z46rzalJpD/b1/lefse_1.0.8-3_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.Z46rzalJpD/b2/lefse_1.0.8-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.308s) 0.308s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.022s) 0.021s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Fri Jan 21 01:41:20 UTC 2022 I: found no differences in the changes files, and a .buildinfo file also exists. Fri Jan 21 01:41:20 UTC 2022 I: lefse from bullseye built successfully and reproducibly on amd64. Fri Jan 21 01:41:21 UTC 2022 I: Submitting .buildinfo files to external archives: Fri Jan 21 01:41:21 UTC 2022 I: Submitting 8.0K b1/lefse_1.0.8-3_amd64.buildinfo.asc Fri Jan 21 01:41:22 UTC 2022 I: Submitting 8.0K b2/lefse_1.0.8-3_amd64.buildinfo.asc Fri Jan 21 01:41:23 UTC 2022 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jan 21 01:41:23 UTC 2022 I: Done submitting .buildinfo files. Fri Jan 21 01:41:23 UTC 2022 I: Removing signed lefse_1.0.8-3_amd64.buildinfo.asc files: removed './b1/lefse_1.0.8-3_amd64.buildinfo.asc' removed './b2/lefse_1.0.8-3_amd64.buildinfo.asc'