Thu Jan 20 02:17:36 UTC 2022 I: starting to build delly/bullseye/amd64 on jenkins on '2022-01-20 02:17' Thu Jan 20 02:17:36 UTC 2022 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_9/36263/console.log Thu Jan 20 02:17:36 UTC 2022 I: Downloading source for bullseye/delly=0.8.7-1 --2022-01-20 02:17:37-- http://cdn-fastly.deb.debian.org/debian/pool/main/d/delly/delly_0.8.7-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2074 (2.0K) Saving to: ‘delly_0.8.7-1.dsc’ 0K .. 100% 116M=0s 2022-01-20 02:17:37 (116 MB/s) - ‘delly_0.8.7-1.dsc’ saved [2074/2074] Thu Jan 20 02:17:37 UTC 2022 I: delly_0.8.7-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: delly Binary: delly Architecture: any Version: 0.8.7-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/dellytools/delly Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/delly Vcs-Git: https://salsa.debian.org/med-team/delly.git Build-Depends: debhelper-compat (= 13), libboost-date-time-dev, libboost-program-options-dev, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libhts-dev, libbz2-dev, zlib1g-dev, chrpath Package-List: delly deb science optional arch=any Checksums-Sha1: c7b180ebc2a6cdbf760b8bc4c7ce23fcc759aac6 86904 delly_0.8.7.orig.tar.xz b6735fff8e100b8db55a8f7d72d5c09157408f90 4204 delly_0.8.7-1.debian.tar.xz Checksums-Sha256: b78e165e3a377cffe9c886b8c2c64d0ff9980aa9d3e60730dc2bd8049d33083b 86904 delly_0.8.7.orig.tar.xz 23805c220f70871a525b358de939992fa8111e829c9b4b6a91fa939be2a3fbd8 4204 delly_0.8.7-1.debian.tar.xz Files: bd54826c69775a3c7c0be0b0297e2e4a 86904 delly_0.8.7.orig.tar.xz 666ff01d310a3f45222a1605790f9188 4204 delly_0.8.7-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJEBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmAESz8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFloQ/zBIrvrgd3WFHRb+KQQhOt5hySvWrGG210 yAmITYiA59TPb9wJQSnT76wbTyF62zQv9HU1DUt9EK3ufcRdqwoXgYhotz4yuSp5 /XweRs5lnTZmCUa0tUnOn7Q0pk5qpVUo2uOlpNG41i3aZldL9A0AModSg0/+5zxX YTNHLMBoNPcBWnu+zxofNqb/6n8AZ73XVYxS2wWJ84pOS7DSUNmhBbzcF/kLGQt3 7gP9sYshGEXm0Qf7K6hGVJW5PwSJUFVm72dnepBbh1C++BjGoQ2B0PDUg1jxtjzM 0sYJmnjrnGwUF0nEUlC3XsPPh4fYG/dRL3PP/wLYnIFHI9WON2IUItj4X7w9wSvL ZzvCKq6z+FIA64Nlj5OAAVd/amGK2HB3Y1K/pHoB+tKOm9v2s6UyEb0HoeGnRTMQ 0c8AbrMrscp4xxFN0dYfceWFy78uvUdLhm7C0tmVjUGAN1WTw2Lm9LNhvH7p+CAx gzK1CNGNRrn6JJ76HFMMAx92K0SA8DjqxuNYDw5HUJ+iJXyAohBgNaw6L/8rPJZ4 mrEe9J2KeF694ebhUpCRnyDJHOFqVavnFSJNhTTzZxpHSohODkH09ETiRRWS+yb/ s/LyNAg4UkJxLBsRH5AL4JYAeqPZ07goaTY691g25BTAP9GJXBrPZsTUrc5qjzKq jS3chLAzjA== =4JfQ -----END PGP SIGNATURE----- Thu Jan 20 02:17:37 UTC 2022 I: Checking whether the package is not for us Thu Jan 20 02:17:37 UTC 2022 I: Starting 1st build on remote node ionos1-amd64.debian.net. Thu Jan 20 02:17:37 UTC 2022 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Thu Jan 20 02:25:48 UTC 2022 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jan 19 14:17:49 -12 2022 I: pbuilder-time-stamp: 1642645069 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [delly_0.8.7-1.dsc] I: copying [./delly_0.8.7.orig.tar.xz] I: copying [./delly_0.8.7-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.y_sfyKR3/trustedkeys.kbx': General error gpgv: Signature made Sun Jan 17 02:35:43 2021 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./delly_0.8.7-1.dsc dpkg-source: info: extracting delly in delly-0.8.7 dpkg-source: info: unpacking delly_0.8.7.orig.tar.xz dpkg-source: info: unpacking delly_0.8.7-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1945677/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='6907f4f4534e4ded9aea0b4ad2ca409c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1945677' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.zCYbIgI2OM/pbuilderrc_2DWL --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.zCYbIgI2OM/b1 --logfile b1/build.log delly_0.8.7-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 5.10.0-10-amd64 #1 SMP Debian 5.10.84-1 (2021-12-08) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 4 08:25 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jul 28 07:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 28 07:09 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jul 28 07:09 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 28 07:09 more -rwsr-xr-x 1 root root 55528 Jul 28 07:09 mount -rwxr-xr-x 1 root root 18664 Jul 28 07:09 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jan 6 21:25 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jul 28 07:09 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 28 07:09 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 28 07:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/1945677/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libboost-date-time-dev, libboost-program-options-dev, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libhts-dev, libbz2-dev, zlib1g-dev, chrpath dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-date-time-dev; however: Package libboost-date-time-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} chrpath{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libboost-date-time-dev{a} libboost-date-time1.74-dev{a} libboost-date-time1.74.0{a} libboost-filesystem-dev{a} libboost-filesystem1.74-dev{a} libboost-filesystem1.74.0{a} libboost-iostreams-dev{a} libboost-iostreams1.74-dev{a} libboost-program-options-dev{a} libboost-program-options1.74-dev{a} libboost-program-options1.74.0{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost-serialization1.74-dev{a} libboost-serialization1.74.0{a} libboost-system-dev{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost1.74-dev{a} libbrotli1{a} libbz2-dev{a} libcurl3-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1{a} libfile-stripnondeterminism-perl{a} libhts-dev{a} libhts3{a} libicu-dev{a} libicu67{a} libldap-2.4-2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 70 newly installed, 0 to remove and 0 not upgraded. Need to get 48.7 MB of archives. After unpacking 305 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 chrpath amd64 0.16-2+b1 [17.1 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 icu-devtools amd64 67.1-7 [201 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libboost1.74-dev amd64 1.74.0-9 [9534 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 libboost-date-time1.74.0 amd64 1.74.0-9 [241 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libboost-serialization1.74.0 amd64 1.74.0-9 [340 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 libboost-serialization1.74-dev amd64 1.74.0-9 [383 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libboost-date-time1.74-dev amd64 1.74.0-9 [250 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libboost-date-time-dev amd64 1.74.0.3 [4332 B] Get: 40 http://deb.debian.org/debian bullseye/main amd64 libboost-filesystem1.74.0 amd64 1.74.0-9 [283 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 libboost-system1.74.0 amd64 1.74.0-9 [241 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 libboost-system1.74-dev amd64 1.74.0-9 [243 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 libboost-filesystem1.74-dev amd64 1.74.0-9 [304 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 libboost-filesystem-dev amd64 1.74.0.3 [4368 B] Get: 45 http://deb.debian.org/debian bullseye/main amd64 libboost-regex1.74.0 amd64 1.74.0-9 [516 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 libicu-dev amd64 67.1-7 [9597 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 libboost-regex1.74-dev amd64 1.74.0-9 [588 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 libboost-iostreams1.74-dev amd64 1.74.0-9 [273 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 libboost-iostreams-dev amd64 1.74.0.3 [4316 B] Get: 50 http://deb.debian.org/debian bullseye/main amd64 libboost-program-options1.74.0 amd64 1.74.0-9 [356 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 libboost-program-options1.74-dev amd64 1.74.0-9 [386 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 libboost-program-options-dev amd64 1.74.0.3 [4340 B] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libboost-system-dev amd64 1.74.0.3 [4468 B] Get: 54 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 libbz2-dev amd64 1.0.8-4 [30.1 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1 [69.1 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1 [106 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3 [232 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 62 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get: 63 http://deb.debian.org/debian bullseye/main amd64 libcurl3-gnutls amd64 7.74.0-1.3+deb11u1 [338 kB] Get: 64 http://deb.debian.org/debian bullseye/main amd64 libcurl4-gnutls-dev amd64 7.74.0-1.3+deb11u1 [429 kB] Get: 65 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get: 66 http://deb.debian.org/debian bullseye/main amd64 libdeflate-dev amd64 1.7-1 [46.9 kB] Get: 67 http://deb.debian.org/debian bullseye/main amd64 libhts3 amd64 1.11-4 [378 kB] Get: 68 http://deb.debian.org/debian bullseye/main amd64 liblzma-dev amd64 5.2.5-2 [229 kB] Get: 69 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Get: 70 http://deb.debian.org/debian bullseye/main amd64 libhts-dev amd64 1.11-4 [3858 kB] Fetched 48.7 MB in 2s (23.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously 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Unpacking libhts-dev:amd64 (1.11-4) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up libboost-system1.74.0:amd64 (1.74.0-9) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up libboost1.74-dev:amd64 (1.74.0-9) ... Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libboost-program-options1.74.0:amd64 (1.74.0-9) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libnghttp2-14:amd64 (1.43.0-1) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up libdeflate0:amd64 (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up libboost-filesystem1.74.0:amd64 (1.74.0-9) ... Setting up file (1:5.39-3) ... Setting up libboost-program-options1.74-dev:amd64 (1.74.0-9) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libboost-program-options-dev:amd64 (1.74.0.3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libboost-system1.74-dev:amd64 (1.74.0-9) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up libboost-regex1.74.0:amd64 (1.74.0-9) ... Setting up autopoint (0.21-4) ... Setting up icu-devtools (67.1-7) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1) ... Setting up liblzma-dev:amd64 (5.2.5-2) ... Setting up libboost-serialization1.74.0:amd64 (1.74.0-9) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:amd64 (1.9.0-2) ... Setting up libboost-filesystem1.74-dev:amd64 (1.74.0-9) ... Setting up libboost-date-time1.74.0:amd64 (1.74.0-9) ... Setting up libdeflate-dev:amd64 (1.7-1) ... Setting up libelf1:amd64 (0.183-1) ... Setting up libicu-dev:amd64 (67.1-7) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7) ... Setting up libboost-filesystem-dev:amd64 (1.74.0.3) ... Setting up chrpath (0.16-2+b1) ... Setting up libbz2-dev:amd64 (1.0.8-4) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libboost-system-dev:amd64 (1.74.0.3) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u1) ... Setting up libcurl4-gnutls-dev:amd64 (7.74.0-1.3+deb11u1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.69-14) ... Setting up libboost-serialization1.74-dev:amd64 (1.74.0-9) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up libboost-regex1.74-dev:amd64 (1.74.0-9) ... Setting up groff-base (1.22.4-6) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libhts3:amd64 (1.11-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhts-dev:amd64 (1.11-4) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libboost-iostreams1.74-dev:amd64 (1.74.0-9) ... Setting up dh-autoreconf (20) ... Setting up libboost-date-time1.74-dev:amd64 (1.74.0-9) ... Setting up libboost-date-time-dev:amd64 (1.74.0.3) ... Setting up debhelper (13.3.4) ... Setting up libboost-iostreams-dev:amd64 (1.74.0.3) ... Processing triggers for libc-bin (2.31-13+deb11u2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/delly-0.8.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../delly_0.8.7-1_source.changes dpkg-buildpackage: info: source package delly dpkg-buildpackage: info: source version 0.8.7-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/delly-0.8.7' dh_auto_clean make -j15 distclean make[2]: Entering directory '/build/delly-0.8.7' if [ -r src/htslib/Makefile ]; then cd src/htslib && make clean; fi rm -f .htslib src/delly .htslib.o src/delly.o .htslib rm -f src/delly make[2]: Leaving directory '/build/delly-0.8.7' rm -rf src/dpe src/delly bin/delly make[1]: Leaving directory '/build/delly-0.8.7' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/delly-0.8.7' dh_auto_build -- BUILT_PROGRAMS="src/delly src/dpe" PARALLEL=1 make -j15 "INSTALL=install --strip-program=true" "BUILT_PROGRAMS=src/delly src/dpe" PARALLEL=1 make[2]: Entering directory '/build/delly-0.8.7' if [ -r src/htslib/Makefile ]; then cd src/htslib && autoheader && autoconf && ./configure --disable-s3 --disable-gcs --disable-libcurl --disable-plugins && make && make lib-static && cd ../../ && touch .htslib; fi g++ -g -O2 -fdebug-prefix-map=/build/delly-0.8.7=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/delly-0.8.7/src/htslib/ -pedantic -W -Wall -Wno-unknown-pragmas -D__STDC_LIMIT_MACROS -fno-strict-aliasing -fpermissive -fopenmp -DOPENMP -O3 -fno-tree-vectorize -DNDEBUG src/delly.cpp -o src/delly -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -L/build/delly-0.8.7/src/htslib/ -L/build/delly-0.8.7/src/htslib//lib -lboost_iostreams -lboost_filesystem -lboost_system -lboost_program_options -lboost_date_time -lhts -lz -llzma -lbz2 -Wl,-rpath,/build/delly-0.8.7/src/htslib/ g++ -g -O2 -fdebug-prefix-map=/build/delly-0.8.7=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/delly-0.8.7/src/htslib/ -pedantic -W -Wall -Wno-unknown-pragmas -D__STDC_LIMIT_MACROS -fno-strict-aliasing -fpermissive -fopenmp -DOPENMP -O3 -fno-tree-vectorize -DNDEBUG src/dpe.cpp -o src/dpe -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -L/build/delly-0.8.7/src/htslib/ -L/build/delly-0.8.7/src/htslib//lib -lboost_iostreams -lboost_filesystem -lboost_system -lboost_program_options -lboost_date_time -lhts -lz -llzma -lbz2 -Wl,-rpath,/build/delly-0.8.7/src/htslib/ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/property_map/vector_property_map.hpp:14, from /usr/include/boost/property_map/property_map.hpp:602, from /usr/include/boost/graph/adjacency_list.hpp:27, from src/dpe.cpp:5: /usr/include/boost/progress.hpp:23:1: note: '#pragma message: This header is deprecated. Use the facilities in or instead.' 23 | BOOST_HEADER_DEPRECATED( "the facilities in or " ) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/timer.hpp:21:1: note: '#pragma message: This header is deprecated. Use the facilities in instead.' 21 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/property_map/vector_property_map.hpp:14, from /usr/include/boost/property_map/property_map.hpp:602, from /usr/include/boost/graph/adjacency_list.hpp:27, from src/delly.h:8, from src/delly.cpp:17: /usr/include/boost/progress.hpp:23:1: note: '#pragma message: This header is deprecated. Use the facilities in or instead.' 23 | BOOST_HEADER_DEPRECATED( "the facilities in or " ) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/timer.hpp:21:1: note: '#pragma message: This header is deprecated. Use the facilities in instead.' 21 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from src/coral.h:18, from src/delly.cpp:22: src/scan.h: In instantiation of 'void torali::scan(const TConfig&, const torali::LibraryInfo&, std::vector >&) [with TConfig = torali::CountDNAConfig]': src/coral.h:707:29: required from here src/scan.h:99:23: warning: comparison of unsigned expression in '>= 0' is always true [-Wtype-limits] 99 | if ((it->lower() >= 0) && (it->upper() < hdr->target_len[refIndex])) { | ~~~~~~~~~~~~~^~~~~ make[2]: Leaving directory '/build/delly-0.8.7' chrpath -d src/dpe src/delly make[1]: Leaving directory '/build/delly-0.8.7' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/delly-0.8.7' # avoiding redundant compile of delly make[1]: Leaving directory '/build/delly-0.8.7' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'delly' in '../delly_0.8.7-1_amd64.deb'. dpkg-deb: building package 'delly-dbgsym' in '../delly-dbgsym_0.8.7-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../delly_0.8.7-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1945677 and its subdirectories I: Current time: Wed Jan 19 14:25:48 -12 2022 I: pbuilder-time-stamp: 1642645548 Thu Jan 20 02:25:49 UTC 2022 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Thu Jan 20 02:25:49 UTC 2022 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Thu Jan 20 02:32:53 UTC 2022 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Thu Jan 20 02:32:53 UTC 2022 I: delly_0.8.7-1_amd64.changes: Format: 1.8 Date: Sun, 17 Jan 2021 15:27:47 +0100 Source: delly Binary: delly delly-dbgsym Architecture: amd64 Version: 0.8.7-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: delly - Structural variant discovery by read analysis Changes: delly (0.8.7-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.1 (routine-update) Checksums-Sha1: cfbcf8ed60018e146bac02f89129e7ac279d23be 5185168 delly-dbgsym_0.8.7-1_amd64.deb be24a337dfcdd1e91246a4c7d2c3230631d874a3 6571 delly_0.8.7-1_amd64.buildinfo f28cc4d5733d2c2336a94f3e53de839f3247258e 325360 delly_0.8.7-1_amd64.deb Checksums-Sha256: eeff2fd166a40aa7b9e73305fec5d5cfcb02a411ae27c137c37d6912ebf8a5dc 5185168 delly-dbgsym_0.8.7-1_amd64.deb 5641e0d2787ebf899cfbd009d1deebb7a0e3de0aa594aa1e85fcd284012ba076 6571 delly_0.8.7-1_amd64.buildinfo cf154feae245e81317a4924d9eaa9af1ab5c66f1754c184329e0d430b7db3496 325360 delly_0.8.7-1_amd64.deb Files: 26642ba052baa9cbe68724f3bf12fa54 5185168 debug optional delly-dbgsym_0.8.7-1_amd64.deb 85ef6655f0858477149009489e2437b4 6571 science optional delly_0.8.7-1_amd64.buildinfo df440b5c592ec928469a793ad1432da2 325360 science optional delly_0.8.7-1_amd64.deb Thu Jan 20 02:32:54 UTC 2022 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.zCYbIgI2OM/delly_0.8.7-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.zCYbIgI2OM/delly_0.8.7-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.zCYbIgI2OM/delly_0.8.7-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.zCYbIgI2OM/b1/delly_0.8.7-1_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.zCYbIgI2OM/b2/delly_0.8.7-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.406s) 0.406s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.086s) 0.086s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Thu Jan 20 02:32:58 UTC 2022 I: found no differences in the changes files, and a .buildinfo file also exists. Thu Jan 20 02:32:58 UTC 2022 I: delly from bullseye built successfully and reproducibly on amd64. Thu Jan 20 02:33:00 UTC 2022 I: Submitting .buildinfo files to external archives: Thu Jan 20 02:33:00 UTC 2022 I: Submitting 8.0K b1/delly_0.8.7-1_amd64.buildinfo.asc Thu Jan 20 02:33:01 UTC 2022 I: Submitting 8.0K b2/delly_0.8.7-1_amd64.buildinfo.asc Thu Jan 20 02:33:02 UTC 2022 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jan 20 02:33:02 UTC 2022 I: Done submitting .buildinfo files. Thu Jan 20 02:33:02 UTC 2022 I: Removing signed delly_0.8.7-1_amd64.buildinfo.asc files: removed './b1/delly_0.8.7-1_amd64.buildinfo.asc' removed './b2/delly_0.8.7-1_amd64.buildinfo.asc'