Fri Aug 4 21:53:31 UTC 2023 I: starting to build dascrubber/bullseye/amd64 on jenkins on '2023-08-04 21:53' Fri Aug 4 21:53:31 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_2/910/console.log Fri Aug 4 21:53:31 UTC 2023 I: Downloading source for bullseye/dascrubber=1.1-2 --2023-08-04 21:53:32-- http://cdn-fastly.deb.debian.org/debian/pool/main/d/dascrubber/dascrubber_1.1-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2004 (2.0K) [text/prs.lines.tag] Saving to: ‘dascrubber_1.1-2.dsc’ 0K . 100% 161M=0s 2023-08-04 21:53:32 (161 MB/s) - ‘dascrubber_1.1-2.dsc’ saved [2004/2004] Fri Aug 4 21:53:32 UTC 2023 I: dascrubber_1.1-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: dascrubber Binary: dascrubber Architecture: any Version: 1.1-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://dazzlerblog.wordpress.com/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/dascrubber Vcs-Git: https://salsa.debian.org/med-team/dascrubber.git Testsuite: autopkgtest Testsuite-Triggers: daligner, dazzdb Build-Depends: debhelper-compat (= 13) Package-List: dascrubber deb science optional arch=any Checksums-Sha1: 909b8b8afb434d98b8da375ddd6e99c33c6cf74f 116926 dascrubber_1.1.orig.tar.gz d32b2015aa4f405b1e3684e2534d464dc629aebc 4332 dascrubber_1.1-2.debian.tar.xz Checksums-Sha256: cd350ac73a580e659c2f3f6fea12c99ceaa62445a7d7c968af97410acab88fcb 116926 dascrubber_1.1.orig.tar.gz 57a52433b9107b6417c58c08a7b7f6b4623acf605285efe248ebcda231874598 4332 dascrubber_1.1-2.debian.tar.xz Files: fbeda989c9ab8ae7aff802810be4a704 116926 dascrubber_1.1.orig.tar.gz 749239f613a7db20d7cb8f37ee719cdc 4332 dascrubber_1.1-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl9C35URHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtF2RRAAlYsiFsyNocOAscd2Iup1T2ovoYI2KZe2 xK6kyMQnvTVjkMn9OP5jQm7UWlBiQZkKlLbg+Hc4z/JGNpeJR/NvqXRcyqV3T3H+ VlvpftRbDS7RC0enXWlU3HC2UruhSGGZBlkH3s6UERbm/ddQ2UzvtAVQBueJLDA6 /83KUMyo80oIzmsvapu03BUZNFqc7gOtoI4KV80xBoD63t/8AOgYA4l9oN2GUgxe AQxyUBIYvp0DvLRTsIBBDkcivh+Xhyj9Gkf0/sroNzOb3O0hHHyFZAK2XxXYCs2q iBwGCPQzzO6AHTeR+xkHftCboRr9SRr6PfM1+fAVa9Fk5TGOt8NcDeR7nTKl4/C4 T2QNwFZnOkj9jMOI6zWS/98pR0TnwiMimDE7r7mL0VgfsB0xIBe6faLp3Ig0w5nV HmU0qKa102fZvMav0I/PFVbXNkX3k5Wva5RgJMZnJr/yv87X0mnc7JG1f3HriV+e 2JQ5aSxIgpJsd3gU9EATGjBuw2syZuImjGJPoue8z82YBmoMGKb0Qd04u1s/Cej9 SEpN8D24jEpX0eq1wRIGpmx+NJTLLOrMhwT8Dg/551inwER2LXiBIY20Rcj662Gb VyqocqnhIjTDFQizploim3jQqCH915ztkeTq/fwTw6QnSJKtEtW78J2jJ6Y0dQna th4jAvRV+W8= =tNf1 -----END PGP SIGNATURE----- Fri Aug 4 21:53:32 UTC 2023 I: Checking whether the package is not for us Fri Aug 4 21:53:32 UTC 2023 I: Starting 1st build on remote node ionos5-amd64.debian.net. Fri Aug 4 21:53:32 UTC 2023 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Fri Aug 4 21:54:13 UTC 2023 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Sep 5 16:16:35 -12 2024 I: pbuilder-time-stamp: 1725596195 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dascrubber_1.1-2.dsc] I: copying [./dascrubber_1.1.orig.tar.gz] I: copying [./dascrubber_1.1-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.vujiOr9h/trustedkeys.kbx': General error gpgv: Signature made Sun Aug 23 09:28:53 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./dascrubber_1.1-2.dsc dpkg-source: info: extracting dascrubber in dascrubber-1.1 dpkg-source: info: unpacking dascrubber_1.1.orig.tar.gz dpkg-source: info: unpacking dascrubber_1.1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying destdir-install.patch dpkg-source: info: applying compiler-flags.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/454492/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16 ' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='ff78e2a4b79b4946a321ba4f704c7f8e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='454492' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.pNgMePas/pbuilderrc_6j5d --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.pNgMePas/b1 --logfile b1/build.log dascrubber_1.1-2.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos5-amd64 6.1.0-10-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.38-2 (2023-07-27) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jan 20 2022 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Jan 24 2023 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 69032 Jan 20 2022 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98048 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jan 20 2022 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jan 20 2022 more -rwsr-xr-x 1 root root 55528 Jan 20 2022 mount -rwxr-xr-x 1 root root 18664 Jan 20 2022 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 8 03:47 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jan 20 2022 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jan 20 2022 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jan 20 2022 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/454492/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19707 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 18.3 MB of archives. After unpacking 67.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8+deb11u1 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Fetched 18.3 MB in 1s (30.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19707 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8+deb11u1_amd64.deb ... Unpacking bsdextrautils (2.36.1-8+deb11u1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../05-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../07-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../09-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../10-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../23-libelf1_0.183-1_amd64.deb ... Unpacking libelf1:amd64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.13+20210201-1_amd64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../25-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../26-libxml2_2.9.10+dfsg-6.7+deb11u4_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Selecting previously unselected package gettext. 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Setting up file (1:5.39-3) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:amd64 (0.183-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up debhelper (13.3.4) ... Processing triggers for libc-bin (2.31-13+deb11u6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/dascrubber-1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dascrubber_1.1-2_source.changes dpkg-buildpackage: info: source package dascrubber dpkg-buildpackage: info: source version 1.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Shruti Sridhar dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j16 clean make[1]: Entering directory '/build/dascrubber-1.1' rm -f DAScover DASqv DAStrim DASpatch DASedit DASmap DASrealign REPcover REPqv REPtrim rm -fr *.dSYM rm -f scrubber.tar.gz make[1]: Leaving directory '/build/dascrubber-1.1' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j16 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/dascrubber-1.1' cc -g -O2 -fdebug-prefix-map=/build/dascrubber-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DAScover.c align.c align.h DB.c DB.h QV.c QV.h -lm -o DAScover cc -g -O2 -fdebug-prefix-map=/build/dascrubber-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DASqv.c align.c align.h DB.c DB.h QV.c QV.h -lm -o DASqv cc -g -O2 -fdebug-prefix-map=/build/dascrubber-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DAStrim.c align.c align.h DB.c DB.h QV.c QV.h -lm -o DAStrim cc -g -O2 -fdebug-prefix-map=/build/dascrubber-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DASpatch.c align.h align.c DB.c DB.h QV.c QV.h -lm -o DASpatch cc -g -O2 -fdebug-prefix-map=/build/dascrubber-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DASedit.c align.c align.h DB.c DB.h QV.c QV.h -lm -o DASedit cc -g -O2 -fdebug-prefix-map=/build/dascrubber-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DASmap.c DB.c DB.h QV.c QV.h -lm -o DASmap cc -g -O2 -fdebug-prefix-map=/build/dascrubber-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DASrealign.c align.c align.h DB.c DB.h QV.c QV.h -lm -o DASrealign cc -g -O2 -fdebug-prefix-map=/build/dascrubber-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now REPcover.c DB.c DB.h QV.c QV.h -lm -o REPcover cc -g -O2 -fdebug-prefix-map=/build/dascrubber-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now REPqv.c DB.c DB.h QV.c QV.h -lm -o REPqv cc -g -O2 -fdebug-prefix-map=/build/dascrubber-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now REPtrim.c DB.c DB.h QV.c QV.h -lm -o REPtrim DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized] 691 | if (css) | ^ DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized] 691 | if (css) | ^ DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized] 691 | if (css) | ^ DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized] 691 | if (css) | ^ DAStrim.c: In function 'GAPS': DAStrim.c:1456:42: warning: 'lidx' may be used uninitialized in this function [-Wmaybe-uninitialized] 1456 | if (Lidx >= 0 && ovls[Lidx].path.aepos + (blen-ovls[Lidx].path.bepos) | ^ DAStrim.c:1356:9: note: 'lidx' was declared here 1356 | int lidx, ridx, sidx, Lidx, Ridx; | ^~~~ DAStrim.c:1444:42: warning: 'ridx' may be used uninitialized in this function [-Wmaybe-uninitialized] 1444 | if (Ridx >= 0 && ovls[Ridx].path.abpos - ovls[Ridx].path.bbpos | ^ DAStrim.c:1356:15: note: 'ridx' was declared here 1356 | int lidx, ridx, sidx, Lidx, Ridx; | ^~~~ align.c: In function 'Compute_Alignment': align.c:4424:17: warning: 'L' may be used uninitialized in this function [-Wmaybe-uninitialized] 4424 | n = L/sizeof(uint16); | ~^~~~~~~~~~~~~~~ align.c: In function 'Compute_Alignment': align.c:4424:17: warning: 'L' may be used uninitialized in this function [-Wmaybe-uninitialized] 4424 | n = L/sizeof(uint16); | ~^~~~~~~~~~~~~~~ align.c: In function 'Compute_Alignment': align.c:4424:17: warning: 'L' may be used uninitialized in this function [-Wmaybe-uninitialized] 4424 | n = L/sizeof(uint16); | ~^~~~~~~~~~~~~~~ align.c: In function 'Compute_Alignment': align.c:4424:17: warning: 'L' may be used uninitialized in this function [-Wmaybe-uninitialized] 4424 | n = L/sizeof(uint16); | ~^~~~~~~~~~~~~~~ align.c: In function 'Compute_Alignment': align.c:4424:17: warning: 'L' may be used uninitialized in this function [-Wmaybe-uninitialized] 4424 | n = L/sizeof(uint16); | ~^~~~~~~~~~~~~~~ DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized] 691 | if (css) | ^ DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized] 691 | if (css) | ^ DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized] 691 | if (css) | ^ DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized] 691 | if (css) | ^ DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized] 691 | if (css) | ^ align.c: In function 'Compute_Alignment': align.c:4424:17: warning: 'L' may be used uninitialized in this function [-Wmaybe-uninitialized] 4424 | n = L/sizeof(uint16); | ~^~~~~~~~~~~~~~~ DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized] 691 | if (css) | ^ make[1]: Leaving directory '/build/dascrubber-1.1' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/dascrubber-1.1' dh_auto_install make -j16 install DESTDIR=/build/dascrubber-1.1/debian/dascrubber AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/dascrubber-1.1' install -d /build/dascrubber-1.1/debian/dascrubber/usr/bin install DAScover DASqv DAStrim DASpatch DASedit DASmap DASrealign REPcover REPqv REPtrim /build/dascrubber-1.1/debian/dascrubber/usr/bin make[2]: Leaving directory '/build/dascrubber-1.1' mkdir -p /build/dascrubber-1.1/debian/dascrubber/usr/share/man/man1 for command in /build/dascrubber-1.1/debian/dascrubber/usr/bin/*; \ do \ ln -s dascrubber.1 \ /build/dascrubber-1.1/debian/dascrubber/usr/share/man/man1/$(basename $command).1; \ done make[1]: Leaving directory '/build/dascrubber-1.1' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'dascrubber' in '../dascrubber_1.1-2_amd64.deb'. dpkg-deb: building package 'dascrubber-dbgsym' in '../dascrubber-dbgsym_1.1-2_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../dascrubber_1.1-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/454492 and its subdirectories I: Current time: Thu Sep 5 16:17:13 -12 2024 I: pbuilder-time-stamp: 1725596233 Fri Aug 4 21:54:14 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Fri Aug 4 21:54:14 UTC 2023 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Fri Aug 4 21:55:00 UTC 2023 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Fri Aug 4 21:55:01 UTC 2023 I: dascrubber_1.1-2_amd64.changes: Format: 1.8 Date: Sun, 23 Aug 2020 23:44:36 +0530 Source: dascrubber Binary: dascrubber dascrubber-dbgsym Architecture: amd64 Version: 1.1-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Shruti Sridhar Description: dascrubber - alignment-based scrubbing pipeline for DNA sequencing reads Changes: dascrubber (1.1-2) unstable; urgency=medium . * Team upload. . [ Afif Elghraoui ] * Remove myself from Uploaders . [ Shruti Sridhar ] * Add autopkgtest * Install docs . [ Andreas Tille ] * Add myself to Uploaders * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit. Checksums-Sha1: 7275d72b61f9f5871ba923c7f17477f014e54cd6 1424020 dascrubber-dbgsym_1.1-2_amd64.deb cbb6361ae5004fd361181ce40de5cfbdf26c8b5a 5233 dascrubber_1.1-2_amd64.buildinfo 10763d7016873318dc9fafa703550b4fc71e7144 168692 dascrubber_1.1-2_amd64.deb Checksums-Sha256: 64c54ff4230abe15052e98408aeeb2467012ae93753795ee4abfe1de74394b93 1424020 dascrubber-dbgsym_1.1-2_amd64.deb cb219d9303f1b4ae881a33d21bfd90265b0d3925b5e147f9a5e12292da0f8a81 5233 dascrubber_1.1-2_amd64.buildinfo 3d1884e37d16277fabe405eb958e1e1aee1f231b34c1896e7d4d09af6d3407a4 168692 dascrubber_1.1-2_amd64.deb Files: a1053b1d00deec719f60af8dcf81a560 1424020 debug optional dascrubber-dbgsym_1.1-2_amd64.deb ff49ec88c6d2ac35c19e45e2ae9598eb 5233 science optional dascrubber_1.1-2_amd64.buildinfo 8d88813aaebf57be7aa931837f5d2da1 168692 science optional dascrubber_1.1-2_amd64.deb Fri Aug 4 21:55:03 UTC 2023 I: diffoscope 243 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.pNgMePas/dascrubber_1.1-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.pNgMePas/dascrubber_1.1-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.pNgMePas/dascrubber_1.1-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.pNgMePas/b1/dascrubber_1.1-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.pNgMePas/b2/dascrubber_1.1-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.444s) 0.444s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.078s) 0.078s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Fri Aug 4 21:55:06 UTC 2023 I: diffoscope 243 found no differences in the changes files, and a .buildinfo file also exists. Fri Aug 4 21:55:06 UTC 2023 I: dascrubber from bullseye built successfully and reproducibly on amd64. Fri Aug 4 21:55:08 UTC 2023 I: Submitting .buildinfo files to external archives: Fri Aug 4 21:55:08 UTC 2023 I: Submitting 8.0K b1/dascrubber_1.1-2_amd64.buildinfo.asc Fri Aug 4 21:55:09 UTC 2023 I: Submitting 8.0K b2/dascrubber_1.1-2_amd64.buildinfo.asc Fri Aug 4 21:55:10 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Aug 4 21:55:10 UTC 2023 I: Done submitting .buildinfo files. Fri Aug 4 21:55:10 UTC 2023 I: Removing signed dascrubber_1.1-2_amd64.buildinfo.asc files: removed './b1/dascrubber_1.1-2_amd64.buildinfo.asc' removed './b2/dascrubber_1.1-2_amd64.buildinfo.asc'