Mon Jan 22 05:56:35 UTC 2024 I: starting to build heudiconv/bookworm/i386 on jenkins on '2024-01-22 05:56' Mon Jan 22 05:56:35 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_1/13987/console.log Mon Jan 22 05:56:35 UTC 2024 I: Downloading source for bookworm/heudiconv=0.11.6-1 --2024-01-22 05:56:38-- http://cdn-fastly.deb.debian.org/debian/pool/main/h/heudiconv/heudiconv_0.11.6-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2236 (2.2K) [text/prs.lines.tag] Saving to: ‘heudiconv_0.11.6-1.dsc’ 0K .. 100% 13.2M=0s 2024-01-22 05:56:38 (13.2 MB/s) - ‘heudiconv_0.11.6-1.dsc’ saved [2236/2236] Mon Jan 22 05:56:38 UTC 2024 I: heudiconv_0.11.6-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: heudiconv Binary: heudiconv Architecture: all Version: 0.11.6-1 Maintainer: Debian Med Packaging Team Uploaders: Michael Hanke , Yaroslav Halchenko Homepage: https://github.com/nipy/heudiconv Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/heudiconv Vcs-Git: https://salsa.debian.org/med-team/heudiconv.git Testsuite: autopkgtest Testsuite-Triggers: python3-mock, python3-pytest Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-datalad, python3-filelock, python3-mock, python3-setuptools, python3-six, python3-pytest, python3-nipype, dcm2niix, help2man, python3-dcmstack, python3-dicom Package-List: heudiconv deb science optional arch=all Checksums-Sha1: 8ceeb06018b2fe1f4006abaa6aefc277404047b1 9076420 heudiconv_0.11.6.orig.tar.gz 2155ebd40d8ea48b5dcb8c3f1e6f18531ed6a05d 4296 heudiconv_0.11.6-1.debian.tar.xz Checksums-Sha256: b659089e1cd9211fbfd99863fb71e88887cafe46d32523dd2e781bd8c0325c40 9076420 heudiconv_0.11.6.orig.tar.gz afeb13e7912bab097c006846fc582ee09fc1363fc1d34ead05fa64986b75ff33 4296 heudiconv_0.11.6-1.debian.tar.xz Files: ad8a5b6340829f87981195ab4297ecbb 9076420 heudiconv_0.11.6.orig.tar.gz 01a484d4ce621641964bc3be995a456f 4296 heudiconv_0.11.6-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEExbkF8OjZ/ZZo/zZvot4jUGLaM/oFAmN78c0ACgkQot4jUGLa M/rU6g//fqquEMgaUlrKO4p8n0tYqe2jEdqU6g7MwXtzgMX2HlJ92HkobX38MCQw DDgNDeFoh8hjFGYw6psHoPaxa6HXrZMIajgI494JXTyCWjz/curNAChikgD3gnBh hChUPo9Dwtx4bOMlp7krLoDB6TKQBAfqs/TzhEM+aieeWIsmUSauK2PyeE7P0ifV YTJ7A+5xlGLmyADYqBh7TuexzEznSt5xfu2CX9mWBA8VJPhjiMny2prLmdli4WgJ g461pzBgaRftxzqx5Q4ccZYBii0MagI9w4AXle6LcZSyZa7z9QE8Xf1LEiUFXlHg kVWcYW2xQId9J4fOcLgJCMALqaxINsT+35J+HG+kRemHVbV+Qo5/yPpc0x1t8o2q fcJMTGgbTlC3POrxRHhhFGgKbIBL8yodB6UzCu/uHPqZUlkYbVIIaxBVrrsOrSJZ FSqbqVkgZnQA2f54nmVXZbjVmPHTotAtYHVHRRJZSdyzDyzgv4avVWRZfw/1B7y+ lPNrc0fDpxqE9zeR16CD9fhWrJec4dY/qolhy0xyDQJzZkLSRyJenRD0bLIqYsHV j7I3vlnVxJJvYFBHySuUUkdFb0p4pyvit2+LNdDAiqjbbGVSz5D9M0b9qWNdDK81 Uq0pFtHboYFpIkSH5Zrv7H7N6QKCg93skQ3jVU/SFWBbsktnjDU= =VrtD -----END PGP SIGNATURE----- Mon Jan 22 05:56:38 UTC 2024 I: Checking whether the package is not for us Mon Jan 22 05:56:38 UTC 2024 I: Starting 1st build on remote node ionos2-i386.debian.net. Mon Jan 22 05:56:38 UTC 2024 I: Preparing to do remote build '1' on ionos2-i386.debian.net. Mon Jan 22 05:59:46 UTC 2024 I: Deleting $TMPDIR on ionos2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jan 21 17:56:42 -12 2024 I: pbuilder-time-stamp: 1705903002 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [heudiconv_0.11.6-1.dsc] I: copying [./heudiconv_0.11.6.orig.tar.gz] I: copying [./heudiconv_0.11.6-1.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Nov 21 21:46:53 2022 gpgv: using RSA key C5B905F0E8D9FD9668FF366FA2DE235062DA33FA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./heudiconv_0.11.6-1.dsc: no acceptable signature found dpkg-source: info: extracting heudiconv in heudiconv-0.11.6 dpkg-source: info: unpacking heudiconv_0.11.6.orig.tar.gz dpkg-source: info: unpacking heudiconv_0.11.6-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying deb-no-demand-on-etelemetry I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/9909/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='d012d5c114fc49f1b8319804f81a742a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='9909' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.FB4JYB8b/pbuilderrc_sFgR --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.FB4JYB8b/b1 --logfile b1/build.log heudiconv_0.11.6-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos2-i386 6.1.0-17-686-pae #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) i686 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Apr 23 2023 bash -rwxr-xr-x 3 root root 38404 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 23 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 84272 Mar 23 2023 findmnt -rwsr-xr-x 1 root root 30240 Mar 23 2023 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 23 2023 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 23 2023 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 23 2023 more -rwsr-xr-x 1 root root 58912 Mar 23 2023 mount -rwxr-xr-x 1 root root 13856 Mar 23 2023 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Jul 28 23:46 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 23 2023 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 2023 tar -rwxr-xr-x 1 root root 13860 Jul 28 23:46 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 23 2023 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 23 2023 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 23 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/9909/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-datalad, python3-filelock, python3-mock, python3-setuptools, python3-six, python3-pytest, python3-nipype, dcm2niix, help2man, python3-dcmstack, python3-dicom dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18156 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-datalad; however: Package python3-datalad is not installed. pbuilder-satisfydepends-dummy depends on python3-filelock; however: Package python3-filelock is not installed. pbuilder-satisfydepends-dummy depends on python3-mock; however: Package python3-mock is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-six; however: Package python3-six is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-nipype; however: Package python3-nipype is not installed. pbuilder-satisfydepends-dummy depends on dcm2niix; however: Package dcm2niix is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on python3-dcmstack; however: Package python3-dcmstack is not installed. pbuilder-satisfydepends-dummy depends on python3-dicom; however: Package python3-dicom is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} curl{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dcm2niix{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} git{a} git-annex{a} git-man{a} groff-base{a} help2man{a} intltool-debian{a} libaec0{a} libapparmor1{a} libarchive-zip-perl{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libcbor0.8{a} libcurl3-gnutls{a} libcurl4{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1{a} liberror-perl{a} libexpat1{a} libexpat1-dev{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhdf5-103-1{a} libhdf5-hl-100{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblocale-gettext-perl{a} liblzf1{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libopenblas-dev{a} libopenblas-pthread-dev{a} libopenblas0{a} libopenblas0-pthread{a} libopenjp2-7{a} libpipeline1{a} libpng16-16{a} libpopt0{a} libpsl5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libraqm0{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libsz2{a} libtiff6{a} libtool{a} libturbojpeg0{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} libxsimd-dev{a} libxslt1.1{a} libyaml-0-2{a} libyaml-cpp0.7{a} lsb-release{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} netbase{a} openssh-client{a} openssl{a} p7zip{a} p7zip-full{a} patool{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-annexremote{a} python3-appdirs{a} python3-attr{a} python3-beniget{a} python3-certifi{a} python3-cffi-backend{a} python3-chardet{a} python3-charset-normalizer{a} python3-ci-info{a} python3-click{a} python3-colorama{a} python3-cryptography{a} python3-datalad{a} python3-dateutil{a} python3-dcmstack{a} python3-decorator{a} python3-dev{a} python3-dicom{a} python3-dipy{a} python3-dipy-lib{a} python3-distro{a} python3-distutils{a} python3-etelemetry{a} python3-fasteners{a} python3-filelock{a} python3-funcsigs{a} python3-future{a} python3-gast{a} python3-gitlab{a} python3-h5py{a} python3-h5py-serial{a} python3-humanize{a} python3-idna{a} python3-importlib-metadata{a} python3-iniconfig{a} python3-iso8601{a} python3-isodate{a} python3-jaraco.classes{a} python3-jeepney{a} python3-keyring{a} python3-keyrings.alt{a} python3-lib2to3{a} python3-lxml{a} python3-minimal{a} python3-mock{a} python3-monotonic{a} python3-more-itertools{a} python3-msgpack{a} python3-networkx{a} python3-nibabel{a} python3-nipype{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pbr{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-ply{a} python3-prov{a} python3-psutil{a} python3-py{a} python3-pycryptodome{a} python3-pydicom{a} python3-pyparsing{a} python3-pytest{a} python3-pythran{a} python3-rdflib{a} python3-requests{a} python3-requests-toolbelt{a} python3-scipy{a} python3-secretstorage{a} python3-setuptools{a} python3-simplejson{a} python3-six{a} python3-tqdm{a} python3-traits{a} python3-tz{a} python3-urllib3{a} python3-zipp{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} rsync{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: aria2 bind9-host git-remote-gcrypt gnome-keyring gnupg graphviz ipython3 javascript-common keepassxc less libarchive-cpio-perl libglib2.0-data libkf5wallet-bin libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lsof mayavi2 nocache pigz publicsuffix python3-boto python3-bottleneck python3-bs4 python3-exif python3-fuse python3-gdal python3-html5lib python3-httpretty python3-jinja2 python3-jsmin python3-matplotlib python3-mutagen python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pydot python3-pydotplus python3-pygments python3-pygraphviz python3-pyperclip python3-sklearn python3-sparqlwrapper python3-tables python3-vcr python3-vtk9 python3-xvfbwrapper python3-yaml shared-mime-info xauth xdg-user-dirs 0 packages upgraded, 217 newly installed, 0 to remove and 0 not upgraded. Need to get 159 MB of archives. After unpacking 840 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 libdbus-1-3 i386 1.14.10-1~deb12u1 [215 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 dbus-bin i386 1.14.10-1~deb12u1 [106 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 dbus-session-bus-common all 1.14.10-1~deb12u1 [78.2 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 libapparmor1 i386 3.0.8-3 [42.2 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 dbus-daemon i386 1.14.10-1~deb12u1 [194 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 dbus-system-bus-common all 1.14.10-1~deb12u1 [79.3 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 dbus i386 1.14.10-1~deb12u1 [99.5 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 liblocale-gettext-perl i386 1.07-5 [15.5 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 libpython3.11-minimal i386 3.11.2-6 [813 kB] Get: 11 http://deb.debian.org/debian bookworm/main i386 python3.11-minimal i386 3.11.2-6 [2130 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 python3-minimal i386 3.11.2-1+b1 [26.3 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 media-types all 10.0.0 [26.1 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 mailcap all 3.70+nmu1 [32.0 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 mime-support all 3.66 [10.9 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 readline-common all 8.2-1.3 [69.0 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 libreadline8 i386 8.2-1.3 [171 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 libpython3.11-stdlib i386 3.11.2-6 [1799 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 python3.11 i386 3.11.2-6 [572 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 libpython3-stdlib i386 3.11.2-1+b1 [9308 B] Get: 21 http://deb.debian.org/debian bookworm/main i386 python3 i386 3.11.2-1+b1 [26.3 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 libpopt0 i386 1.19+dfsg-1 [45.6 kB] Get: 23 http://deb.debian.org/debian bookworm/main i386 rsync i386 3.2.7-1 [427 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 tzdata all 2023c-5+deb12u1 [296 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 netbase all 6.4 [12.8 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 openssl i386 3.0.11-1~deb12u2 [1423 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 ca-certificates all 20230311 [153 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 32 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 33 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 34 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 35 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 36 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 37 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 38 http://deb.debian.org/debian bookworm/main i386 libbsd0 i386 0.11.7-2 [121 kB] Get: 39 http://deb.debian.org/debian bookworm/main i386 libedit2 i386 3.1-20221030-2 [97.2 kB] Get: 40 http://deb.debian.org/debian bookworm/main i386 libcbor0.8 i386 0.8.0-2+b1 [29.8 kB] Get: 41 http://deb.debian.org/debian bookworm/main i386 libfido2-1 i386 1.12.0-2+b1 [87.0 kB] Get: 42 http://deb.debian.org/debian bookworm/main i386 openssh-client i386 1:9.2p1-2+deb12u1 [1005 kB] Get: 43 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 44 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 46 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 47 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 48 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB] Get: 49 http://deb.debian.org/debian bookworm/main i386 libsasl2-modules-db i386 2.1.28+dfsg-10 [21.4 kB] Get: 50 http://deb.debian.org/debian bookworm/main i386 libsasl2-2 i386 2.1.28+dfsg-10 [62.7 kB] Get: 51 http://deb.debian.org/debian bookworm/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB] Get: 52 http://deb.debian.org/debian bookworm/main i386 libnghttp2-14 i386 1.52.0-1+deb12u1 [80.7 kB] Get: 53 http://deb.debian.org/debian bookworm/main i386 libpsl5 i386 0.21.2-1 [59.3 kB] Get: 54 http://deb.debian.org/debian bookworm/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 55 http://deb.debian.org/debian bookworm/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB] Get: 56 http://deb.debian.org/debian bookworm/main i386 libcurl4 i386 7.88.1-10+deb12u4 [424 kB] Get: 57 http://deb.debian.org/debian bookworm/main i386 curl i386 7.88.1-10+deb12u4 [319 kB] Get: 58 http://deb.debian.org/debian bookworm/main i386 libopenjp2-7 i386 2.5.0-2 [196 kB] Get: 59 http://deb.debian.org/debian bookworm/main i386 libturbojpeg0 i386 1:2.1.5-2 [216 kB] Get: 60 http://deb.debian.org/debian bookworm/main i386 libyaml-cpp0.7 i386 0.7.0+dfsg-8+b1 [120 kB] Get: 61 http://deb.debian.org/debian bookworm/main i386 dcm2niix i386 1.0.20220720-1 [263 kB] Get: 62 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 63 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 64 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 65 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 66 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 67 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 68 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 69 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 70 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 71 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 72 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.3~deb12u1 [720 kB] Get: 73 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 74 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 75 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 76 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 77 http://deb.debian.org/debian bookworm/main i386 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 78 http://deb.debian.org/debian bookworm/main i386 python3-distutils all 3.11.2-3 [131 kB] Get: 79 http://deb.debian.org/debian bookworm/main i386 dh-python all 5.20230130+deb12u1 [104 kB] Get: 80 http://deb.debian.org/debian bookworm/main i386 libcurl3-gnutls i386 7.88.1-10+deb12u4 [417 kB] Get: 81 http://deb.debian.org/debian bookworm/main i386 liberror-perl all 0.17029-2 [29.0 kB] Get: 82 http://deb.debian.org/debian bookworm/main i386 git-man all 1:2.39.2-1.1 [2049 kB] Get: 83 http://deb.debian.org/debian bookworm/main i386 git i386 1:2.39.2-1.1 [8525 kB] Get: 84 http://deb.debian.org/debian bookworm/main i386 libyaml-0-2 i386 0.2.5-1 [55.9 kB] Get: 85 http://deb.debian.org/debian bookworm/main i386 git-annex i386 10.20230126-3 [21.1 MB] Get: 86 http://deb.debian.org/debian bookworm/main i386 help2man i386 1.49.3 [198 kB] Get: 87 http://deb.debian.org/debian bookworm/main i386 libaec0 i386 1.0.6-1+b1 [22.4 kB] Get: 88 http://deb.debian.org/debian bookworm/main i386 libblas3 i386 3.11.0-2 [139 kB] Get: 89 http://deb.debian.org/debian bookworm/main i386 libboost1.74-dev i386 1.74.0+ds1-21 [9508 kB] Get: 90 http://deb.debian.org/debian bookworm/main i386 libboost-dev i386 1.74.0.3 [4548 B] Get: 91 http://deb.debian.org/debian bookworm/main i386 libdeflate0 i386 1.14-1 [57.5 kB] Get: 92 http://deb.debian.org/debian bookworm/main i386 libexpat1-dev i386 2.5.0-1 [158 kB] Get: 93 http://deb.debian.org/debian bookworm/main i386 libpng16-16 i386 1.6.39-2 [283 kB] Get: 94 http://deb.debian.org/debian bookworm/main i386 libfreetype6 i386 2.12.1+dfsg-5 [410 kB] Get: 95 http://deb.debian.org/debian bookworm/main i386 libfribidi0 i386 1.0.8-2.1 [65.6 kB] Get: 96 http://deb.debian.org/debian bookworm/main i386 libgfortran5 i386 12.2.0-14 [698 kB] Get: 97 http://deb.debian.org/debian bookworm/main i386 libglib2.0-0 i386 2.74.6-2 [1467 kB] Get: 98 http://deb.debian.org/debian bookworm/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB] Get: 99 http://deb.debian.org/debian bookworm/main i386 libharfbuzz0b i386 6.0.0+dfsg-3 [1966 kB] Get: 100 http://deb.debian.org/debian bookworm/main i386 libsz2 i386 1.0.6-1+b1 [7884 B] Get: 101 http://deb.debian.org/debian bookworm/main i386 libhdf5-103-1 i386 1.10.8+repack1-1 [1175 kB] Get: 102 http://deb.debian.org/debian bookworm/main i386 libhdf5-hl-100 i386 1.10.8+repack1-1 [79.3 kB] Get: 103 http://deb.debian.org/debian bookworm/main i386 libimagequant0 i386 2.17.0-1 [32.9 kB] Get: 104 http://deb.debian.org/debian bookworm/main i386 libjbig0 i386 2.1-6.1 [31.6 kB] Get: 105 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo i386 1:2.1.5-2 [169 kB] Get: 106 http://deb.debian.org/debian bookworm/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 107 http://deb.debian.org/debian bookworm/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 108 http://deb.debian.org/debian bookworm/main i386 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 109 http://deb.debian.org/debian bookworm/main i386 libopenblas0-pthread i386 0.3.21+ds-4 [5148 kB] Get: 110 http://deb.debian.org/debian bookworm/main i386 liblapack3 i386 3.11.0-2 [2092 kB] Get: 111 http://deb.debian.org/debian bookworm/main i386 liblbfgsb0 i386 3.0+dfsg.4-1 [28.5 kB] Get: 112 http://deb.debian.org/debian bookworm/main i386 liblcms2-2 i386 2.14-2 [165 kB] Get: 113 http://deb.debian.org/debian bookworm/main i386 liblerc4 i386 4.0.0+ds-2 [181 kB] Get: 114 http://deb.debian.org/debian bookworm/main i386 liblzf1 i386 3.6-3 [9668 B] Get: 115 http://deb.debian.org/debian bookworm/main i386 libopenblas0 i386 0.3.21+ds-4 [32.6 kB] Get: 116 http://deb.debian.org/debian bookworm/main i386 libopenblas-pthread-dev i386 0.3.21+ds-4 [3447 kB] Get: 117 http://deb.debian.org/debian bookworm/main i386 libopenblas-dev i386 0.3.21+ds-4 [44.9 kB] Get: 118 http://deb.debian.org/debian bookworm/main i386 libpython3.11 i386 3.11.2-6 [2013 kB] Get: 119 http://deb.debian.org/debian bookworm/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB] Get: 120 http://deb.debian.org/debian bookworm/main i386 libpython3.11-dev i386 3.11.2-6 [4906 kB] Get: 121 http://deb.debian.org/debian bookworm/main i386 libpython3-dev i386 3.11.2-1+b1 [9580 B] Get: 122 http://deb.debian.org/debian bookworm/main i386 libpython3-all-dev i386 3.11.2-1+b1 [1068 B] Get: 123 http://deb.debian.org/debian bookworm/main i386 libraqm0 i386 0.7.0-4.1 [11.1 kB] Get: 124 http://deb.debian.org/debian bookworm/main i386 libwebp7 i386 1.2.4-0.2+deb12u1 [294 kB] Get: 125 http://deb.debian.org/debian bookworm/main i386 libtiff6 i386 4.5.0-6+deb12u1 [332 kB] Get: 126 http://deb.debian.org/debian bookworm/main i386 libwebpdemux2 i386 1.2.4-0.2+deb12u1 [99.8 kB] Get: 127 http://deb.debian.org/debian bookworm/main i386 libwebpmux3 i386 1.2.4-0.2+deb12u1 [111 kB] Get: 128 http://deb.debian.org/debian bookworm/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 129 http://deb.debian.org/debian bookworm/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 130 http://deb.debian.org/debian bookworm/main i386 libxcb1 i386 1.15-1 [148 kB] Get: 131 http://deb.debian.org/debian bookworm/main i386 libxsimd-dev i386 8.1.0-7 [88.8 kB] Get: 132 http://deb.debian.org/debian bookworm/main i386 libxslt1.1 i386 1.1.35-1 [253 kB] Get: 133 http://deb.debian.org/debian bookworm/main i386 lsb-release all 12.0-1 [6416 B] Get: 134 http://deb.debian.org/debian bookworm/main i386 p7zip i386 16.02+dfsg-8 [433 kB] Get: 135 http://deb.debian.org/debian bookworm/main i386 p7zip-full i386 16.02+dfsg-8 [1313 kB] Get: 136 http://deb.debian.org/debian bookworm/main i386 patool all 1.12-5 [36.3 kB] Get: 137 http://deb.debian.org/debian bookworm/main i386 python3-all i386 3.11.2-1+b1 [1056 B] Get: 138 http://deb.debian.org/debian bookworm/main i386 python3.11-dev i386 3.11.2-6 [615 kB] Get: 139 http://deb.debian.org/debian bookworm/main i386 python3-dev i386 3.11.2-1+b1 [26.2 kB] Get: 140 http://deb.debian.org/debian bookworm/main i386 python3-all-dev i386 3.11.2-1+b1 [1072 B] Get: 141 http://deb.debian.org/debian bookworm/main i386 python3-annexremote all 1.6.0-1 [16.7 kB] Get: 142 http://deb.debian.org/debian bookworm/main i386 python3-appdirs all 1.4.4-3 [13.0 kB] Get: 143 http://deb.debian.org/debian bookworm/main i386 python3-attr all 22.2.0-1 [65.4 kB] Get: 144 http://deb.debian.org/debian bookworm/main i386 python3-gast all 0.5.2-2 [9364 B] Get: 145 http://deb.debian.org/debian bookworm/main i386 python3-beniget all 0.4.1-3 [9920 B] Get: 146 http://deb.debian.org/debian bookworm/main i386 python3-certifi all 2022.9.24-1 [153 kB] Get: 147 http://deb.debian.org/debian bookworm/main i386 python3-cffi-backend i386 1.15.1-5+b1 [88.0 kB] Get: 148 http://deb.debian.org/debian bookworm/main i386 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 149 http://deb.debian.org/debian bookworm/main i386 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get: 150 http://deb.debian.org/debian bookworm/main i386 python3-charset-normalizer all 3.0.1-2 [49.3 kB] Get: 151 http://deb.debian.org/debian bookworm/main i386 python3-ci-info all 0.2.0-2 [6852 B] Get: 152 http://deb.debian.org/debian bookworm/main i386 python3-colorama all 0.4.6-2 [36.8 kB] Get: 153 http://deb.debian.org/debian bookworm/main i386 python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 154 http://deb.debian.org/debian bookworm/main i386 python3-zipp all 1.0.0-6 [6696 B] Get: 155 http://deb.debian.org/debian bookworm/main i386 python3-importlib-metadata all 4.12.0-1 [24.9 kB] Get: 156 http://deb.debian.org/debian bookworm/main i386 python3-click all 8.1.3-2 [92.2 kB] Get: 157 http://deb.debian.org/debian bookworm/main i386 python3-cryptography i386 38.0.4-3 [678 kB] Get: 158 http://deb.debian.org/debian bookworm/main i386 python3-distro all 1.8.0-1 [20.5 kB] Get: 159 http://deb.debian.org/debian bookworm/main i386 python3-monotonic all 1.6-2 [5728 B] Get: 160 http://deb.debian.org/debian bookworm/main i386 python3-six all 1.16.0-4 [17.5 kB] Get: 161 http://deb.debian.org/debian bookworm/main i386 python3-fasteners all 0.17.3-2 [14.7 kB] Get: 162 http://deb.debian.org/debian bookworm/main i386 python3-idna all 3.3-1 [39.4 kB] Get: 163 http://deb.debian.org/debian bookworm/main i386 python3-urllib3 all 1.26.12-1 [117 kB] Get: 164 http://deb.debian.org/debian bookworm/main i386 python3-requests all 2.28.1+dfsg-1 [67.9 kB] Get: 165 http://deb.debian.org/debian bookworm/main i386 python3-requests-toolbelt all 0.10.1-1 [41.3 kB] Get: 166 http://deb.debian.org/debian bookworm/main i386 python3-gitlab all 1:3.12.0-1 [67.6 kB] Get: 167 http://deb.debian.org/debian bookworm/main i386 python3-humanize all 4.4.0-1 [46.4 kB] Get: 168 http://deb.debian.org/debian bookworm/main i386 python3-iso8601 all 1.0.2-1 [15.7 kB] Get: 169 http://deb.debian.org/debian bookworm/main i386 python3-jaraco.classes all 3.2.1-3 [7184 B] Get: 170 http://deb.debian.org/debian bookworm/main i386 python3-jeepney all 0.8.0-3 [34.0 kB] Get: 171 http://deb.debian.org/debian bookworm/main i386 python3-secretstorage all 3.3.3-1 [16.9 kB] Get: 172 http://deb.debian.org/debian bookworm/main i386 python3-keyring all 23.9.3-2 [51.4 kB] Get: 173 http://deb.debian.org/debian bookworm/main i386 python3-pycryptodome i386 3.11.0+dfsg1-4 [1025 kB] Get: 174 http://deb.debian.org/debian bookworm/main i386 python3-keyrings.alt all 4.2.0-1 [20.4 kB] Get: 175 http://deb.debian.org/debian bookworm/main i386 python3-setuptools all 66.1.1-1 [521 kB] Get: 176 http://deb.debian.org/debian bookworm/main i386 python3-pbr all 5.10.0-2 [61.4 kB] Get: 177 http://deb.debian.org/debian bookworm/main i386 python3-mock all 4.0.3-4 [64.0 kB] Get: 178 http://deb.debian.org/debian bookworm/main i386 python3-msgpack i386 1.0.3-2+b1 [70.0 kB] Get: 179 http://deb.debian.org/debian bookworm/main i386 python3-pil i386 9.4.0-1.1+b1 [473 kB] Get: 180 http://deb.debian.org/debian bookworm/main i386 python3-tqdm all 4.64.1-1 [97.7 kB] Get: 181 http://deb.debian.org/debian bookworm/main i386 python3-packaging all 23.0-1 [32.5 kB] Get: 182 http://deb.debian.org/debian bookworm/main i386 python3-datalad all 0.18.1-2 [876 kB] Get: 183 http://deb.debian.org/debian bookworm/main i386 python3-dateutil all 2.8.2-2 [78.3 kB] Get: 184 http://deb.debian.org/debian bookworm/main i386 python3-pydicom all 2.3.1-1 [1239 kB] Get: 185 http://deb.debian.org/debian bookworm/main i386 python3-dicom all 2.3.1-1 [3572 B] Get: 186 http://deb.debian.org/debian bookworm/main i386 python3-numpy i386 1:1.24.2-1 [6115 kB] Get: 187 http://deb.debian.org/debian bookworm/main i386 python3-decorator all 5.1.1-3 [14.9 kB] Get: 188 http://deb.debian.org/debian bookworm/main i386 python3-ply all 3.11-5 [65.8 kB] Get: 189 http://deb.debian.org/debian bookworm/main i386 python3-pythran i386 0.11.0+ds-7 [427 kB] Get: 190 http://deb.debian.org/debian bookworm/main i386 python3-scipy i386 1.10.1-2 [15.2 MB] Get: 191 http://deb.debian.org/debian bookworm/main i386 python3-nibabel all 5.0.0-2 [2669 kB] Get: 192 http://deb.debian.org/debian bookworm/main i386 python3-dcmstack all 0.9-1 [75.8 kB] Get: 193 http://deb.debian.org/debian bookworm/main i386 python3-h5py-serial i386 3.7.0-8 [810 kB] Get: 194 http://deb.debian.org/debian bookworm/main i386 python3-h5py all 3.7.0-8 [10.3 kB] Get: 195 http://deb.debian.org/debian bookworm/main i386 python3-tz all 2022.7.1-4 [30.1 kB] Get: 196 http://deb.debian.org/debian bookworm/main i386 python3-pandas-lib i386 1.5.3+dfsg-2 [3382 kB] Get: 197 http://deb.debian.org/debian bookworm/main i386 python3-pandas all 1.5.3+dfsg-2 [2885 kB] Get: 198 http://deb.debian.org/debian bookworm/main i386 python3-dipy-lib i386 1.6.0-1+b1 [1741 kB] Get: 199 http://deb.debian.org/debian bookworm/main i386 python3-dipy all 1.6.0-1 [3258 kB] Get: 200 http://deb.debian.org/debian bookworm/main i386 python3-etelemetry all 0.3.0-3 [6980 B] Get: 201 http://deb.debian.org/debian bookworm/main i386 python3-filelock all 3.9.0-1 [9460 B] Get: 202 http://deb.debian.org/debian bookworm/main i386 python3-funcsigs all 1.0.2-5 [14.0 kB] Get: 203 http://deb.debian.org/debian bookworm/main i386 python3-future all 0.18.2-6 [348 kB] Get: 204 http://deb.debian.org/debian bookworm/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 205 http://deb.debian.org/debian bookworm/main i386 python3-isodate all 0.6.1-1 [25.3 kB] Get: 206 http://deb.debian.org/debian bookworm/main i386 python3-lxml i386 4.9.2-1+b1 [1182 kB] Get: 207 http://deb.debian.org/debian bookworm/main i386 python3-networkx all 2.8.8-1 [1425 kB] Get: 208 http://deb.debian.org/debian bookworm/main i386 python3-pyparsing all 3.0.9-1 [138 kB] Get: 209 http://deb.debian.org/debian bookworm/main i386 python3-rdflib all 6.1.1-1 [385 kB] Get: 210 http://deb.debian.org/debian bookworm/main i386 python3-prov all 2.0.0-2 [95.6 kB] Get: 211 http://deb.debian.org/debian bookworm/main i386 python3-simplejson i386 3.18.3-1 [61.0 kB] Get: 212 http://deb.debian.org/debian bookworm/main i386 python3-traits i386 6.3.2-1+b3 [4805 kB] Get: 213 http://deb.debian.org/debian bookworm/main i386 python3-psutil i386 5.9.4-1+b1 [190 kB] Get: 214 http://deb.debian.org/debian bookworm/main i386 python3-nipype all 1.8.5-3 [1865 kB] Get: 215 http://deb.debian.org/debian bookworm/main i386 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 216 http://deb.debian.org/debian bookworm/main i386 python3-py all 1.11.0-1 [89.2 kB] Get: 217 http://deb.debian.org/debian bookworm/main i386 python3-pytest all 7.2.1-2 [236 kB] Fetched 159 MB in 47s (3366 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libdbus-1-3:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18156 files and directories currently installed.) Preparing to unpack .../00-libdbus-1-3_1.14.10-1~deb12u1_i386.deb ... Unpacking libdbus-1-3:i386 (1.14.10-1~deb12u1) ... Selecting previously unselected package dbus-bin. Preparing to unpack .../01-dbus-bin_1.14.10-1~deb12u1_i386.deb ... Unpacking dbus-bin (1.14.10-1~deb12u1) ... Selecting previously unselected package dbus-session-bus-common. 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Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19030 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_i386.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package libpopt0:i386. Preparing to unpack .../001-libpopt0_1.19+dfsg-1_i386.deb ... Unpacking libpopt0:i386 (1.19+dfsg-1) ... 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Unpacking libturbojpeg0:i386 (1:2.1.5-2) ... Selecting previously unselected package libyaml-cpp0.7:i386. Preparing to unpack .../039-libyaml-cpp0.7_0.7.0+dfsg-8+b1_i386.deb ... Unpacking libyaml-cpp0.7:i386 (0.7.0+dfsg-8+b1) ... Selecting previously unselected package dcm2niix. Preparing to unpack .../040-dcm2niix_1.0.20220720-1_i386.deb ... Unpacking dcm2niix (1.0.20220720-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../041-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../042-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../043-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../044-libarchive-zip-perl_1.68-1_all.deb ... 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Preparing to unpack .../062-git_1%3a2.39.2-1.1_i386.deb ... Unpacking git (1:2.39.2-1.1) ... Selecting previously unselected package libyaml-0-2:i386. Preparing to unpack .../063-libyaml-0-2_0.2.5-1_i386.deb ... Unpacking libyaml-0-2:i386 (0.2.5-1) ... Selecting previously unselected package git-annex. Preparing to unpack .../064-git-annex_10.20230126-3_i386.deb ... Unpacking git-annex (10.20230126-3) ... Selecting previously unselected package help2man. Preparing to unpack .../065-help2man_1.49.3_i386.deb ... Unpacking help2man (1.49.3) ... Selecting previously unselected package libaec0:i386. Preparing to unpack .../066-libaec0_1.0.6-1+b1_i386.deb ... Unpacking libaec0:i386 (1.0.6-1+b1) ... Selecting previously unselected package libblas3:i386. Preparing to unpack .../067-libblas3_3.11.0-2_i386.deb ... Unpacking libblas3:i386 (3.11.0-2) ... Selecting previously unselected package libboost1.74-dev:i386. Preparing to unpack .../068-libboost1.74-dev_1.74.0+ds1-21_i386.deb ... 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Setting up media-types (10.0.0) ... Setting up libpipeline1:i386 (1.5.7-1) ... Setting up libgraphite2-3:i386 (1.3.14-1) ... Setting up liblcms2-2:i386 (2.14-2) ... Setting up libxau6:i386 (1:1.0.9-1) ... Setting up libapparmor1:i386 (3.0.8-3) ... Setting up libpsl5:i386 (0.21.2-1) ... Setting up libboost1.74-dev:i386 (1.74.0+ds1-21) ... Setting up libicu72:i386 (72.1-3) ... Setting up liblerc4:i386 (4.0.0+ds-2) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:i386 (0.2.5-1) ... Setting up libglib2.0-0:i386 (2.74.6-2) ... No schema files found: doing nothing. Setting up libcbor0.8:i386 (0.8.0-2+b1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:i386 (1.0.9-2+b6) ... Setting up libnghttp2-14:i386 (1.52.0-1+deb12u1) ... Setting up libmagic1:i386 (1:5.44-3) ... Setting up libdeflate0:i386 (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libturbojpeg0:i386 (1:2.1.5-2) ... Setting up libjbig0:i386 (2.1-6.1) ... Setting up libaec0:i386 (1.0.6-1+b1) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg-10) ... Setting up tzdata (2023c-5+deb12u1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Jan 22 05:58:08 UTC 2024. Universal Time is now: Mon Jan 22 05:58:08 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up liberror-perl (0.17029-2) ... Setting up libxsimd-dev:i386 (8.1.0-7) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libexpat1-dev:i386 (2.5.0-1) ... Setting up libjpeg62-turbo:i386 (1:2.1.5-2) ... Setting up libyaml-cpp0.7:i386 (0.7.0+dfsg-8+b1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libdbus-1-3:i386 (1.14.10-1~deb12u1) ... Setting up liblzf1:i386 (3.6-3) ... Setting up libfribidi0:i386 (1.0.8-2.1) ... Setting up libimagequant0:i386 (2.17.0-1) ... Setting up libpng16-16:i386 (1.6.39-2) ... Setting up autopoint (0.21-12) ... Setting up libsasl2-2:i386 (2.1.28+dfsg-10) ... Setting up libgfortran5:i386 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:i386 (1.2.4-0.2+deb12u1) ... Setting up zlib1g-dev:i386 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libtiff6:i386 (4.5.0-6+deb12u1) ... Setting up dbus-session-bus-common (1.14.10-1~deb12u1) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libopenjp2-7:i386 (2.5.0-2) ... Setting up libsub-override-perl (0.09-4) ... Setting up git-man (1:2.39.2-1.1) ... Setting up libssh2-1:i386 (1.10.0-3+b1) ... Setting up netbase (6.4) ... Setting up libboost-dev:i386 (1.74.0.3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up lsb-release (12.0-1) ... Setting up dbus-system-bus-common (1.14.10-1~deb12u1) ... Setting up libfido2-1:i386 (1.12.0-2+b1) ... Setting up openssl (3.0.11-1~deb12u2) ... Setting up libwebpmux3:i386 (1.2.4-0.2+deb12u1) ... Setting up libbsd0:i386 (0.11.7-2) ... Setting up mailcap (3.70+nmu1) ... Setting up libelf1:i386 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:i386 (2.9.14+dfsg-1.3~deb12u1) ... Setting up dbus-bin (1.14.10-1~deb12u1) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up p7zip (16.02+dfsg-8) ... Setting up libsz2:i386 (1.0.6-1+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libpopt0:i386 (1.19+dfsg-1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up liblapack3:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libxcb1:i386 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libopenblas0-pthread:i386 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/i386-linux-gnu/libopenblas.so.0 (libopenblas.so.0-i386-linux-gnu) in auto mode Setting up mime-support (3.66) ... Setting up libtool (2.4.7-5) ... Setting up libwebpdemux2:i386 (1.2.4-0.2+deb12u1) ... Setting up libedit2:i386 (3.1-20221030-2) ... Setting up libreadline8:i386 (8.2-1.3) ... Setting up p7zip-full (16.02+dfsg-8) ... Setting up dbus-daemon (1.14.10-1~deb12u1) ... Setting up dcm2niix (1.0.20220720-1) ... Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libfreetype6:i386 (2.12.1+dfsg-5) ... Setting up dbus (1.14.10-1~deb12u1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up libopenblas0:i386 (0.3.21+ds-4) ... Setting up groff-base (1.22.4-10) ... Setting up libxslt1.1:i386 (1.1.35-1) ... Setting up libcurl4:i386 (7.88.1-10+deb12u4) ... Setting up libharfbuzz0b:i386 (6.0.0+dfsg-3) ... Setting up curl (7.88.1-10+deb12u4) ... Setting up rsync (3.2.7-1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up liblbfgsb0:i386 (3.0+dfsg.4-1) ... Setting up libopenblas-pthread-dev:i386 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/i386-linux-gnu/libopenblas.so (libopenblas.so-i386-linux-gnu) in auto mode Setting up openssh-client (1:9.2p1-2+deb12u1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:i386 (3.11.2-6) ... Setting up libcurl3-gnutls:i386 (7.88.1-10+deb12u4) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libopenblas-dev:i386 (0.3.21+ds-4) ... Setting up libraqm0:i386 (0.7.0-4.1) ... Setting up git (1:2.39.2-1.1) ... Setting up libhdf5-103-1:i386 (1.10.8+repack1-1) ... Setting up git-annex (10.20230126-3) ... Setting up libpython3-stdlib:i386 (3.11.2-1+b1) ... Setting up libhdf5-hl-100:i386 (1.10.8+repack1-1) ... Setting up python3.11 (3.11.2-6) ... Setting up libpython3.11:i386 (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-psutil (5.9.4-1+b1) ... Setting up python3-tz (2022.7.1-4) ... Setting up python3-monotonic (1.6-2) ... Setting up python3-six (1.16.0-4) ... Setting up python3-simplejson (3.18.3-1) ... Setting up python3-isodate (0.6.1-1) ... Setting up python3-pil:i386 (9.4.0-1.1+b1) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-packaging (23.0-1) ... Setting up python3-iso8601 (1.0.2-1) ... Setting up python3-pyparsing (3.0.9-1) ... Setting up python3-certifi (2022.9.24-1) ... Setting up libpython3.11-dev:i386 (3.11.2-6) ... Setting up python3-funcsigs (1.0.2-5) ... Setting up python3-idna (3.3-1) ... Setting up python3-fasteners (0.17.3-2) ... Setting up python3-jeepney (0.8.0-3) ... Setting up python3-ci-info (0.2.0-2) ... Setting up python3-urllib3 (1.26.12-1) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3-lxml:i386 (4.9.2-1+b1) ... Setting up python3-pydicom (2.3.1-1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-msgpack (1.0.3-2+b1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-appdirs (1.4.4-3) ... Setting up python3-cffi-backend:i386 (1.15.1-5+b1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130+deb12u1) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-attr (22.2.0-1) ... Setting up python3-filelock (3.9.0-1) ... Setting up python3-jaraco.classes (3.2.1-3) ... Setting up patool (1.12-5) ... Setting up libpython3-dev:i386 (3.11.2-1+b1) ... Setting up python3-annexremote (1.6.0-1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-distro (1.8.0-1) ... Setting up python3-traits (6.3.2-1+b3) ... Setting up python3-py (1.11.0-1) ... Setting up python3-colorama (0.4.6-2) ... Setting up python3-pbr (5.10.0-2) ... Setting up python3.11-dev (3.11.2-6) ... Setting up python3-charset-normalizer (3.0.1-2) ... Setting up python3-pytest (7.2.1-2) ... Setting up python3-pycryptodome (3.11.0+dfsg1-4) ... Setting up python3-ply (3.11-5) ... Setting up python3-tqdm (4.64.1-1) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-zipp (1.0.0-6) ... Setting up python3-click (8.1.3-2) ... Setting up python3-dicom (2.3.1-1) ... Setting up python3-networkx (2.8.8-1) ... Setting up python3-mock (4.0.3-4) ... Setting up python3-beniget (0.4.1-3) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up libpython3-all-dev:i386 (3.11.2-1+b1) ... Setting up python3-cryptography (38.0.4-3) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-requests (2.28.1+dfsg-1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-rdflib (6.1.1-1) ... Setting up python3-future (0.18.2-6) ... update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up python3-humanize (4.4.0-1) ... Setting up python3-all-dev (3.11.2-1+b1) ... Setting up python3-requests-toolbelt (0.10.1-1) ... Setting up python3-importlib-metadata (4.12.0-1) ... Setting up python3-pandas-lib:i386 (1.5.3+dfsg-2) ... Setting up python3-h5py-serial (3.7.0-8) ... Setting up python3-prov (2.0.0-2) ... Setting up python3-etelemetry (0.3.0-3) ... Setting up python3-dipy-lib:i386 (1.6.0-1+b1) ... Setting up python3-pandas (1.5.3+dfsg-2) ... Setting up python3-secretstorage (3.3.3-1) ... Setting up python3-h5py (3.7.0-8) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up python3-keyring (23.9.3-2) ... Setting up python3-gitlab (1:3.12.0-1) ... Setting up python3-scipy (1.10.1-2) ... Setting up python3-dipy (1.6.0-1) ... Setting up python3-nibabel (5.0.0-2) ... Setting up python3-keyrings.alt (4.2.0-1) ... Setting up python3-nipype (1.8.5-3) ... Setting up python3-dcmstack (0.9-1) ... Setting up python3-datalad (0.18.1-2) ... Processing triggers for libc-bin (2.36-9+deb12u3) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/heudiconv-0.11.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../heudiconv_0.11.6-1_source.changes dpkg-buildpackage: info: source package heudiconv dpkg-buildpackage: info: source version 0.11.6-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Yaroslav Halchenko dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p 3.11 I: pybuild base:240: python3.11 setup.py clean running clean removing '/build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build' (and everything under it) 'build/bdist.linux-i386' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/heudiconv-0.11.6' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/heudiconv.substvars debian/files rm -fr -- debian/heudiconv/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) # Ahhhhhhh! rm -rf .pybuild build .pytest_cache/ rm -rf heudiconv.egg-info/ make[1]: Leaving directory '/build/reproducible-path/heudiconv-0.11.6' debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p 3.11 I: pybuild base:240: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild pybuild --build -i python{version} -p 3.11 I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv copying heudiconv/dicoms.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv copying heudiconv/convert.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv copying heudiconv/bids.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv copying heudiconv/_version.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv copying heudiconv/queue.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv copying heudiconv/__init__.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv copying heudiconv/utils.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv copying heudiconv/info.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv copying heudiconv/main.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv copying heudiconv/due.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv copying heudiconv/parser.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv creating /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/cli copying heudiconv/cli/monitor.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/cli copying heudiconv/cli/__init__.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/cli copying heudiconv/cli/run.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/cli creating /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/external copying heudiconv/external/dcmstack.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/external copying heudiconv/external/dlad.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/external copying heudiconv/external/pydicom.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/external copying heudiconv/external/__init__.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/external creating /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests copying heudiconv/tests/test_main.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests copying heudiconv/tests/test_queue.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests copying heudiconv/tests/test_monitor.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests copying heudiconv/tests/anonymize_script.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests copying heudiconv/tests/test_heuristics.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests copying heudiconv/tests/test_convert.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests copying heudiconv/tests/test_bids.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests copying heudiconv/tests/test_dicoms.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests copying heudiconv/tests/test_regression.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests copying heudiconv/tests/test_tarballs.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests copying heudiconv/tests/test_utils.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests copying heudiconv/tests/__init__.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests copying heudiconv/tests/utils.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests creating /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/heuristics copying heudiconv/heuristics/bids_PhoenixReport.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/heuristics copying heudiconv/heuristics/cmrr_heuristic.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/heuristics copying heudiconv/heuristics/bids_with_ses.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/heuristics copying heudiconv/heuristics/test_reproin.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/heuristics copying heudiconv/heuristics/test_b0dwi_for_fmap.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/heuristics copying heudiconv/heuristics/example.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/heuristics copying heudiconv/heuristics/studyforrest_phase2.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/heuristics copying heudiconv/heuristics/banda-bids.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/heuristics copying heudiconv/heuristics/__init__.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/heuristics copying heudiconv/heuristics/uc_bids.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/heuristics copying heudiconv/heuristics/convertall.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/heuristics copying heudiconv/heuristics/reproin.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/heuristics copying heudiconv/heuristics/bids_ME.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/heuristics copying heudiconv/heuristics/multires_7Tbold.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/heuristics creating /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/external/tests copying heudiconv/external/tests/test_dlad.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/external/tests copying heudiconv/external/tests/__init__.py -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/external/tests creating /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/data copying heudiconv/tests/data/phantom.dcm -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/data copying heudiconv/tests/data/axasc35.dcm -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/data creating /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/data/b0dwiForFmap copying heudiconv/tests/data/b0dwiForFmap/b0dwi_for_fmap+00002.dcm -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/data/b0dwiForFmap copying heudiconv/tests/data/b0dwiForFmap/b0dwi_for_fmap+00003.dcm -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/data/b0dwiForFmap copying heudiconv/tests/data/b0dwiForFmap/b0dwi_for_fmap+00001.dcm -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/data/b0dwiForFmap creating /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/data/01-fmap_acq-3mm copying heudiconv/tests/data/01-fmap_acq-3mm/1.3.12.2.1107.5.2.43.66112.2016101409263663466202201.dcm -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/data/01-fmap_acq-3mm creating /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/data/01-anat-scout copying heudiconv/tests/data/01-anat-scout/0001.dcm -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/data/01-anat-scout creating /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/data/Phoenix creating /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/data/Phoenix/99+PhoenixDocument copying heudiconv/tests/data/Phoenix/99+PhoenixDocument/99+PhoenixDocument+00001.dcm -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/data/Phoenix/99+PhoenixDocument creating /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/data/Phoenix/01+AA copying heudiconv/tests/data/Phoenix/01+AA/01+AA+00001.dcm -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/data/Phoenix/01+AA copying heudiconv/tests/data/sample_nifti_params.txt -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/data copying heudiconv/tests/data/sample_nifti.nii.gz -> /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/data dh_auto_test -O--buildsystem=pybuild pybuild --test --test-pytest -i python{version} -p 3.11 I: pybuild pybuild:307: cp -a heudiconv/tests /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/ I: pybuild base:240: cd /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build; python3.11 -m pytest ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack rootdir: /build/reproducible-path/heudiconv-0.11.6 collected 99 items / 1 skipped heudiconv/external/tests/test_dlad.py . [ 1%] heudiconv/heuristics/test_reproin.py ........ [ 9%] heudiconv/tests/test_bids.py ..................................s [ 44%] heudiconv/tests/test_convert.py .......... [ 54%] heudiconv/tests/test_dicoms.py ... [ 57%] heudiconv/tests/test_heuristics.py .F......... [ 68%] heudiconv/tests/test_main.py .............. [ 82%] heudiconv/tests/test_queue.py ... [ 85%] heudiconv/tests/test_regression.py sss. [ 89%] heudiconv/tests/test_tarballs.py . [ 90%] heudiconv/tests/test_utils.py ......... [100%] =================================== FAILURES =================================== _ test_reproin_largely_smoke[--files /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/data-reproin] _ tmpdir = local('/tmp/pytest-of-pbuilder1/pytest-0/test_reproin_largely_smoke___f0') heuristic = 'reproin' invocation = '--files /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/data' @pytest.mark.parametrize('heuristic', ['reproin', 'convertall']) @pytest.mark.parametrize( 'invocation', [ "--files %s" % TESTS_DATA_PATH, # our new way with automated grouping "-d %s/{subject}/* -s 01-fmap_acq-3mm" % TESTS_DATA_PATH # "old" way specifying subject # should produce the same results ]) @pytest.mark.skipif(Dataset is None, reason="no datalad") def test_reproin_largely_smoke(tmpdir, heuristic, invocation): is_bids = True if heuristic == 'reproin' else False arg = "--random-seed 1 -f %s -c dcm2niix -o %s" \ % (heuristic, tmpdir) if is_bids: arg += " -b" arg += " --datalad " args = ( arg + invocation ).split(' ') # Test some safeguards if invocation == "--files %s" % TESTS_DATA_PATH: # Multiple subjects must not be specified -- only a single one could # be overridden from the command line with pytest.raises(ValueError): runner(args + ['--subjects', 'sub1', 'sub2']) if heuristic != 'reproin': # if subject is not overridden, raise error with pytest.raises(NotImplementedError): runner(args) return runner(args) ds = Dataset(str(tmpdir)) assert ds.is_installed() assert not ds.repo.dirty head = ds.repo.get_hexsha() # and if we rerun -- should fail lgr.info( "RERUNNING, expecting to FAIL since the same everything " "and -c specified so we did conversion already" ) with pytest.raises(RuntimeError): > runner(args) /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/test_heuristics.py:89: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/cli/run.py:24: in main workflow(**kwargs) /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/main.py:327: in workflow study_sessions = get_study_sessions(dicom_dir_template, files, /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/parser.py:178: in get_study_sessions seqinfo_dict = group_dicoms_into_seqinfos( /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/dicoms.py:202: in group_dicoms_into_seqinfos mwinfo = validate_dicom(filename, dcmfilter) /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/dicoms.py:102: in validate_dicom mw = dw.wrapper_from_file(fl, force=True, stop_before_pixels=True) /usr/lib/python3/dist-packages/nibabel/nicom/dicomwrappers.py:58: in wrapper_from_file dcm_data = pydicom.read_file(fobj, *args, **kwargs) /usr/lib/python3/dist-packages/pydicom/filereader.py:1021: in dcmread dataset = read_partial( /usr/lib/python3/dist-packages/pydicom/filereader.py:852: in read_partial dataset = read_dataset( /usr/lib/python3/dist-packages/pydicom/filereader.py:427: in read_dataset raw_data_element = next(de_gen) /usr/lib/python3/dist-packages/pydicom/filereader.py:207: in data_element_generator fp_read(length) if length > 0 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = , args = (1768444706,) kwargs = {} def read(self, *args, **kwargs): > return self.fobj.read(*args, **kwargs) E MemoryError /usr/lib/python3/dist-packages/nibabel/openers.py:198: MemoryError ----------------------------- Captured stdout call ----------------------------- create(ok): /tmp/pytest-of-pbuilder1/pytest-0/test_reproin_largely_smoke___f0 (dataset) add(ok): head (dataset) add(ok): .gitmodules (file) save(ok): . (dataset) create(ok): head (dataset) action summary: add (ok: 2) create (ok: 1) save (ok: 1) add(ok): advanced applications libraries (dataset) add(ok): .gitmodules (file) save(ok): . (dataset) create(ok): advanced applications libraries (dataset) action summary: add (ok: 2) create (ok: 1) save (ok: 1) add(ok): .gitattributes (file) save(ok): . (dataset) action summary: add (ok: 1) save (ok: 1) add(ok): advanced applications libraries (dataset) add(ok): .gitmodules (file) save(ok): head (dataset) add(ok): head (dataset) add(ok): .gitmodules (file) save(ok): . (dataset) action summary: add (ok: 4) save (notneeded: 1, ok: 2) add(ok): .heudiconv (dataset) add(ok): .gitmodules (file) save(ok): . (dataset) create(ok): .heudiconv (dataset) action summary: add (ok: 2) create (ok: 1) save (ok: 1) add(ok): dbictest1/info/dbictest1.auto.txt (file) add(ok): dbictest1/info/dbictest1.edit.txt (file) add(ok): dbictest1/info/dicominfo.tsv (file) add(ok): dbictest1/info/filegroup.json (file) add(ok): dbictest1/info/heuristic.py (file) save(ok): .heudiconv (dataset) add(ok): .heudiconv (dataset) add(ok): .gitmodules (file) add(ok): CHANGES (file) add(ok): README (file) add(ok): dataset_description.json (file) add(ok): participants.json (file) add(ok): participants.tsv (file) add(ok): scans.json (file) add(ok): sourcedata/README (file) add(ok): sourcedata/sub-dbictest1/anat/sub-dbictest1_scout.dicom.tgz (file) save(ok): . (dataset) action summary: add (ok: 15) save (ok: 2) add(ok): advanced applications libraries (dataset) add(ok): .gitmodules (file) save(ok): head (dataset) add(ok): head (dataset) add(ok): .gitmodules (file) save(ok): . (dataset) action summary: add (ok: 4) save (notneeded: 2, ok: 2) add(ok): Development (dataset) add(ok): .gitmodules (file) save(ok): . (dataset) create(ok): Development (dataset) action summary: add (ok: 2) create (ok: 1) save (ok: 1) add(ok): Functional (dataset) add(ok): .gitmodules (file) save(ok): . (dataset) create(ok): Functional (dataset) action summary: add (ok: 2) create (ok: 1) save (ok: 1) add(ok): .gitattributes (file) save(ok): . (dataset) action summary: add (ok: 1) save (ok: 1) add(ok): Functional (dataset) add(ok): .gitmodules (file) save(ok): Development (dataset) add(ok): Development (dataset) add(ok): .gitmodules (file) save(ok): . (dataset) action summary: add (ok: 4) save (notneeded: 1, ok: 2) add(ok): .heudiconv (dataset) add(ok): .gitmodules (file) save(ok): . (dataset) create(ok): .heudiconv (dataset) action summary: add (ok: 2) create (ok: 1) save (ok: 1) add(ok): o6jgilro/info/dicominfo.tsv (file) add(ok): o6jgilro/info/filegroup.json (file) add(ok): o6jgilro/info/heuristic.py (file) add(ok): o6jgilro/info/o6jgilro.auto.txt (file) add(ok): o6jgilro/info/o6jgilro.edit.txt (file) save(ok): .heudiconv (dataset) add(ok): .heudiconv (dataset) add(ok): .gitmodules (file) add(ok): CHANGES (file) add(ok): README (file) add(ok): dataset_description.json (file) add(ok): participants.json (file) add(ok): participants.tsv (file) add(ok): scans.json (file) add(ok): sourcedata/README (file) add(ok): sourcedata/sub-o6jgilro/anat/sub-o6jgilro_32ch-head-coil_scout.dicom.tgz (file) save(ok): . (dataset) action summary: add (ok: 15) save (ok: 2) add(ok): Functional (dataset) add(ok): .gitmodules (file) save(ok): Development (dataset) add(ok): Development (dataset) add(ok): .gitmodules (file) save(ok): . (dataset) action summary: add (ok: 4) save (notneeded: 2, ok: 2) add(ok): Halchenko (dataset) add(ok): .gitmodules (file) save(ok): . (dataset) create(ok): Halchenko (dataset) action summary: add (ok: 2) create (ok: 1) save (ok: 1) add(ok): Yarik (dataset) add(ok): .gitmodules (file) save(ok): . (dataset) create(ok): Yarik (dataset) action summary: add (ok: 2) create (ok: 1) save (ok: 1) add(ok): 950_bids_test4 (dataset) add(ok): .gitmodules (file) save(ok): . (dataset) create(ok): 950_bids_test4 (dataset) action summary: add (ok: 2) create (ok: 1) save (ok: 1) add(ok): .gitattributes (file) save(ok): . (dataset) action summary: add (ok: 1) save (ok: 1) add(ok): 950_bids_test4 (dataset) add(ok): .gitmodules (file) save(ok): Halchenko/Yarik (dataset) add(ok): Yarik (dataset) add(ok): .gitmodules (file) save(ok): Halchenko (dataset) add(ok): Halchenko (dataset) add(ok): .gitmodules (file) save(ok): . (dataset) action summary: add (ok: 6) save (notneeded: 1, ok: 3) 240121-17:59:14,547 nipype.workflow INFO: [Node] Setting-up "convert" in "/tmp/dcm2niix3ukw6buk/convert". 240121-17:59:14,558 nipype.workflow INFO: [Node] Executing "convert" 240121-17:59:14,598 nipype.interface INFO: stdout 2024-01-21T17:59:14.598628:Chris Rorden's dcm2niiX version v1.0.20220720 (JP2:OpenJPEG) GCC12.1.0 (32-bit Linux) 240121-17:59:14,598 nipype.interface INFO: stdout 2024-01-21T17:59:14.598628:Found 1 DICOM file(s) 240121-17:59:14,598 nipype.interface INFO: stdout 2024-01-21T17:59:14.598628:Convert 1 DICOM as /tmp/pytest-of-pbuilder1/pytest-0/test_reproin_largely_smoke___f0/Halchenko/Yarik/950_bids_test4/sub-phantom1sid1/ses-localizer/fmap/sub-phantom1sid1_ses-localizer_acq-3mm_phasediff_heudiconv137_e2_ph (64x64x1x1) 240121-17:59:14,599 nipype.interface INFO: stdout 2024-01-21T17:59:14.599338:Conversion required 0.007516 seconds (0.007512 for core code). 240121-17:59:14,653 nipype.workflow INFO: [Node] Finished "convert", elapsed time 0.093483s. 240121-17:59:14,677 nipype.workflow INFO: [Node] Setting-up "embedder" in "/tmp/embedmetapwm4rm3p/embedder". 240121-17:59:14,682 nipype.workflow INFO: [Node] Executing "embedder" 240121-17:59:14,726 nipype.workflow INFO: [Node] Finished "embedder", elapsed time 0.043679s. add(ok): .heudiconv (dataset) add(ok): .gitmodules (file) save(ok): . (dataset) create(ok): .heudiconv (dataset) action summary: add (ok: 2) create (ok: 1) save (ok: 1) add(ok): phantom1sid1/ses-localizer/info/dicominfo_ses-localizer.tsv (file) add(ok): phantom1sid1/ses-localizer/info/filegroup_ses-localizer.json (file) add(ok): phantom1sid1/ses-localizer/info/heuristic.py (file) add(ok): phantom1sid1/ses-localizer/info/phantom1sid1_ses-localizer.auto.txt (file) add(ok): phantom1sid1/ses-localizer/info/phantom1sid1_ses-localizer.edit.txt (file) save(ok): .heudiconv (dataset) add(ok): .heudiconv (dataset) add(ok): .gitmodules (file) add(ok): CHANGES (file) add(ok): README (file) add(ok): dataset_description.json (file) add(ok): participants.json (file) add(ok): participants.tsv (file) add(ok): scans.json (file) add(ok): sourcedata/README (file) add(ok): sourcedata/sub-phantom1sid1/ses-localizer/anat/sub-phantom1sid1_ses-localizer_scout.dicom.tgz (file) add(ok): sourcedata/sub-phantom1sid1/ses-localizer/fmap/sub-phantom1sid1_ses-localizer_acq-3mm_phasediff.dicom.tgz (file) add(ok): sub-phantom1sid1/ses-localizer/fmap/sub-phantom1sid1_ses-localizer_acq-3mm_phasediff.json (file) add(ok): sub-phantom1sid1/ses-localizer/fmap/sub-phantom1sid1_ses-localizer_acq-3mm_phasediff.nii.gz (file) add(ok): sub-phantom1sid1/ses-localizer/sub-phantom1sid1_ses-localizer_scans.tsv (file) save(ok): . (dataset) action summary: add (ok: 19) save (ok: 2) add(ok): 950_bids_test4 (dataset) add(ok): .gitmodules (file) save(ok): Halchenko/Yarik (dataset) add(ok): Yarik (dataset) add(ok): .gitmodules (file) save(ok): Halchenko (dataset) add(ok): Halchenko (dataset) add(ok): .gitmodules (file) save(ok): . (dataset) action summary: add (ok: 6) save (notneeded: 2, ok: 3) add(ok): Research (dataset) add(ok): .gitmodules (file) save(ok): . (dataset) create(ok): Research (dataset) action summary: add (ok: 2) create (ok: 1) save (ok: 1) add(ok): MCBI_TESTING (dataset) add(ok): .gitmodules (file) save(ok): . (dataset) create(ok): MCBI_TESTING (dataset) action summary: add (ok: 2) create (ok: 1) save (ok: 1) add(ok): .gitattributes (file) save(ok): . (dataset) action summary: add (ok: 1) save (ok: 1) add(ok): MCBI_TESTING (dataset) add(ok): .gitmodules (file) save(ok): Research (dataset) add(ok): Research (dataset) add(ok): .gitmodules (file) save(ok): . (dataset) action summary: add (ok: 4) save (notneeded: 1, ok: 2) add(ok): .heudiconv (dataset) add(ok): .gitmodules (file) save(ok): . (dataset) create(ok): .heudiconv (dataset) action summary: add (ok: 2) create (ok: 1) save (ok: 1) add(ok): crlab/info/crlab.auto.txt (file) add(ok): crlab/info/crlab.edit.txt (file) add(ok): crlab/info/dicominfo.tsv (file) add(ok): crlab/info/filegroup.json (file) add(ok): crlab/info/heuristic.py (file) save(ok): .heudiconv (dataset) add(ok): .heudiconv (dataset) add(ok): .gitmodules (file) add(ok): CHANGES (file) add(ok): README (file) add(ok): dataset_description.json (file) add(ok): participants.json (file) add(ok): participants.tsv (file) add(ok): scans.json (file) save(ok): . (dataset) action summary: add (ok: 13) save (ok: 2) add(ok): MCBI_TESTING (dataset) add(ok): .gitmodules (file) save(ok): Research (dataset) add(ok): Research (dataset) add(ok): .gitmodules (file) save(ok): . (dataset) action summary: add (ok: 4) save (notneeded: 2, ok: 2) add(ok): Investigators (dataset) add(ok): .gitmodules (file) save(ok): . (dataset) create(ok): Investigators (dataset) action summary: add (ok: 2) create (ok: 1) save (ok: 1) add(ok): Winawer (dataset) add(ok): .gitmodules (file) save(ok): . (dataset) create(ok): Winawer (dataset) action summary: add (ok: 2) create (ok: 1) save (ok: 1) add(ok): .gitattributes (file) save(ok): . (dataset) action summary: add (ok: 1) save (ok: 1) add(ok): Winawer (dataset) add(ok): .gitmodules (file) save(ok): Investigators (dataset) add(ok): Investigators (dataset) add(ok): .gitmodules (file) save(ok): . (dataset) action summary: add (ok: 4) save (notneeded: 1, ok: 2) add(ok): .heudiconv (dataset) add(ok): .gitmodules (file) save(ok): . (dataset) create(ok): .heudiconv (dataset) action summary: add (ok: 2) create (ok: 1) save (ok: 1) add(ok): ke6hl9lm/info/dicominfo.tsv (file) add(ok): ke6hl9lm/info/filegroup.json (file) add(ok): ke6hl9lm/info/heuristic.py (file) add(ok): ke6hl9lm/info/ke6hl9lm.auto.txt (file) add(ok): ke6hl9lm/info/ke6hl9lm.edit.txt (file) save(ok): .heudiconv (dataset) add(ok): .heudiconv (dataset) add(ok): .gitmodules (file) add(ok): CHANGES (file) add(ok): README (file) add(ok): dataset_description.json (file) add(ok): participants.json (file) add(ok): participants.tsv (file) add(ok): scans.json (file) save(ok): . (dataset) action summary: add (ok: 13) save (ok: 2) add(ok): Winawer (dataset) add(ok): .gitmodules (file) save(ok): Investigators (dataset) add(ok): Investigators (dataset) add(ok): .gitmodules (file) save(ok): . (dataset) action summary: add (ok: 4) save (notneeded: 2, ok: 2) ------------------------------ Captured log call ------------------------------- WARNING heudiconv.main:main.py:302 Could not check for version updates: Connection to server could not be made WARNING heudiconv.dicoms:dicoms.py:119 Ignoring /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/data/sample_nifti.json since not quite a "normal" DICOM: 'FileDataset' object has no attribute 'SeriesNumber' WARNING heudiconv.dicoms:dicoms.py:119 Ignoring /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/data/sample_nifti.nii.gz since not quite a "normal" DICOM: 'FileDataset' object has no attribute 'SeriesNumber' WARNING heudiconv.dicoms:dicoms.py:119 Ignoring /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/data/sample_nifti_params.txt since not quite a "normal" DICOM: 'FileDataset' object has no attribute 'SeriesNumber' INFO datalad:log.py:432 Clear progress bars INFO datalad:log.py:432 Refresh progress bars INFO datalad.core.local.save:log.py:432 Total: starting INFO datalad.core.local.save:log.py:432 INFO datalad:log.py:432 Clear progress bars INFO datalad:log.py:432 Refresh progress bars INFO datalad:log.py:432 Clear progress bars INFO datalad:log.py:432 Refresh progress bars INFO datalad.core.local.save:log.py:432 Total: processed result for /tmp/pytest-of-pbuilder1/pytest-0/test_reproin_largely_smoke___f0 INFO datalad:log.py:432 Clear progress bars INFO datalad:log.py:432 Refresh progress bars INFO datalad.core.local.save:log.py:432 Total: done INFO datalad:log.py:432 Clear progress bars INFO datalad:log.py:432 Refresh progress bars INFO datalad:log.py:432 Clear progress bars INFO datalad:log.py:432 Refresh progress bars INFO datalad.core.local.save:log.py:432 Total: starting INFO datalad.core.local.save:log.py:432 INFO datalad:log.py:432 Clear progress bars INFO 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processed result for /tmp/pytest-of-pbuilder1/pytest-0/test_reproin_largely_smoke___f0/head INFO datalad:log.py:432 Clear progress bars INFO datalad:log.py:432 Refresh progress bars INFO datalad:log.py:432 Clear progress bars INFO datalad:log.py:432 Refresh progress bars INFO datalad:log.py:432 Clear progress bars INFO datalad:log.py:432 Refresh progress bars INFO datalad.core.local.save:log.py:432 Total: processed result for /tmp/pytest-of-pbuilder1/pytest-0/test_reproin_largely_smoke___f0 INFO datalad:log.py:432 Clear progress bars INFO datalad:log.py:432 Refresh progress bars INFO datalad.core.local.save:log.py:432 Total: done INFO datalad:log.py:432 Clear progress bars INFO datalad:log.py:432 Refresh progress bars WARNING heudiconv.bids:bids.py:902 We cannot add the IntendedFor field: no fmap/ in /tmp/pytest-of-pbuilder1/pytest-0/test_reproin_largely_smoke___f0/head/advanced applications libraries/sub-dbictest1 INFO datalad.core.local.save:log.py:432 Total: starting INFO 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datalad.core.local.save:log.py:432 INFO datalad.core.local.save:log.py:432 Total: processed result for /tmp/pytest-of-pbuilder1/pytest-0/test_reproin_largely_smoke___f0/Development/Functional INFO datalad:log.py:432 Clear progress bars INFO datalad:log.py:432 Refresh progress bars INFO datalad:log.py:432 Clear progress bars INFO datalad:log.py:432 Refresh progress bars INFO datalad.core.local.save:log.py:432 Total: processed result for /tmp/pytest-of-pbuilder1/pytest-0/test_reproin_largely_smoke___f0/Development INFO datalad:log.py:432 Clear progress bars INFO datalad:log.py:432 Refresh progress bars INFO datalad:log.py:432 Clear progress bars INFO datalad:log.py:432 Refresh progress bars INFO datalad:log.py:432 Clear progress bars INFO datalad:log.py:432 Refresh progress bars INFO datalad.core.local.save:log.py:432 Total: processed result for /tmp/pytest-of-pbuilder1/pytest-0/test_reproin_largely_smoke___f0 INFO datalad:log.py:432 Clear progress bars INFO datalad:log.py:432 Refresh progress bars INFO datalad.core.local.save:log.py:432 Total: done INFO datalad:log.py:432 Clear progress bars INFO datalad:log.py:432 Refresh progress bars WARNING heudiconv:reproin.py:447 Could not determine the series name by looking at protocol_name, series_description fields WARNING heudiconv:reproin.py:637 Could not figure out where to stick 1 sequences: ['99-Phoenix Document'] WARNING heudiconv.bids:bids.py:902 We cannot add the IntendedFor field: no fmap/ in /tmp/pytest-of-pbuilder1/pytest-0/test_reproin_largely_smoke___f0/Development/Functional/sub-o6jgilro INFO datalad.core.local.save:log.py:432 Total: starting INFO datalad.core.local.save:log.py:432 INFO datalad.core.local.save:log.py:432 Total: processed result for /tmp/pytest-of-pbuilder1/pytest-0/test_reproin_largely_smoke___f0/Development/Functional INFO datalad.core.local.save:log.py:432 Total: done INFO datalad.core.local.save:log.py:432 Total: starting INFO datalad.core.local.save:log.py:432 INFO datalad:log.py:432 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bars INFO nipype.workflow:nodes.py:453 [Node] Setting-up "convert" in "/tmp/dcm2niix3ukw6buk/convert". INFO nipype.workflow:nodes.py:716 [Node] Executing "convert" INFO nipype.interface:subprocess.py:69 stdout 2024-01-21T17:59:14.598628:Chris Rorden's dcm2niiX version v1.0.20220720 (JP2:OpenJPEG) GCC12.1.0 (32-bit Linux) INFO nipype.interface:subprocess.py:69 stdout 2024-01-21T17:59:14.598628:Found 1 DICOM file(s) INFO nipype.interface:subprocess.py:69 stdout 2024-01-21T17:59:14.598628:Convert 1 DICOM as /tmp/pytest-of-pbuilder1/pytest-0/test_reproin_largely_smoke___f0/Halchenko/Yarik/950_bids_test4/sub-phantom1sid1/ses-localizer/fmap/sub-phantom1sid1_ses-localizer_acq-3mm_phasediff_heudiconv137_e2_ph (64x64x1x1) INFO nipype.interface:subprocess.py:69 stdout 2024-01-21T17:59:14.599338:Conversion required 0.007516 seconds (0.007512 for core code). INFO nipype.workflow:nodes.py:723 [Node] Finished "convert", elapsed time 0.093483s. WARNING heudiconv.convert:convert.py:882 Failed to find task field in /tmp/pytest-of-pbuilder1/pytest-0/test_reproin_largely_smoke___f0/Halchenko/Yarik/950_bids_test4/sub-phantom1sid1/ses-localizer/fmap/sub-phantom1sid1_ses-localizer_acq-3mm_phasediff.json. INFO nipype.workflow:nodes.py:453 [Node] Setting-up "embedder" in "/tmp/embedmetapwm4rm3p/embedder". INFO nipype.workflow:nodes.py:716 [Node] Executing "embedder" INFO nipype.workflow:nodes.py:723 [Node] Finished "embedder", elapsed time 0.043679s. 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not check for version updates: Connection to server could not be made =============================== warnings summary =============================== ../../../../../../usr/lib/python3/dist-packages/traits/observation/_generated_parser.py:258 /usr/lib/python3/dist-packages/traits/observation/_generated_parser.py:258: DeprecationWarning: module 'sre_parse' is deprecated import sre_parse ../../../../../../usr/lib/python3/dist-packages/traits/observation/_generated_parser.py:259 /usr/lib/python3/dist-packages/traits/observation/_generated_parser.py:259: DeprecationWarning: module 'sre_constants' is deprecated import sre_constants heudiconv/bids.py:162 /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/bids.py:162: DeprecationWarning: invalid escape sequence '\s' """Aggregate across the entire BIDS dataset ``.json``\s into top level ``.json``\s heudiconv/bids.py:181 /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/bids.py:181: DeprecationWarning: invalid escape sequence '\_' for fpath in find_files('.*_task-.*\_bold\.json', heudiconv/bids.py:184 /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/bids.py:184: DeprecationWarning: invalid escape sequence '\.' exclude="/\.(datalad|heudiconv)/"): heudiconv/bids.py:190 /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/bids.py:190: DeprecationWarning: invalid escape sequence '\.' task = re.sub('.*_(task-[^_\.]*(_acq-[^_\.]*)?)_.*', r'\1', fpath) .pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/test_convert.py::test_b0dwi_for_fmap .pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/test_heuristics.py::test_phoenix_doc_conversion .pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/test_main.py::test_cache /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/parser.py:204: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead lgr.warn("Heuristic is missing an `infotoids` method, assigning " .pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/test_convert.py::test_b0dwi_for_fmap .pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/test_convert.py::test_b0dwi_for_fmap /usr/lib/python3/dist-packages/nipype/utils/filemanip.py:696: DeprecationWarning: Use setlocale(), getencoding() and getlocale() instead default_encoding = encoding or locale.getdefaultlocale()[1] or "UTF-8" .pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/test_convert.py: 4 warnings .pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/test_dicoms.py: 2 warnings .pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/test_heuristics.py: 20 warnings .pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/test_main.py: 2 warnings .pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/test_regression.py: 4 warnings /usr/lib/python3/dist-packages/nipype/utils/subprocess.py:34: DeprecationWarning: Use setlocale(), getencoding() and getlocale() instead self.default_encoding = locale.getdefaultlocale()[1] or "UTF-8" .pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/test_convert.py::test_b0dwi_for_fmap /usr/lib/python3/dist-packages/pydicom/valuerep.py:290: UserWarning: The value length (22) exceeds the maximum length of 16 allowed for VR SH. warnings.warn(msg) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ FAILED heudiconv/tests/test_heuristics.py::test_reproin_largely_smoke[--files /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build/heudiconv/tests/data-reproin] ============ 1 failed, 94 passed, 5 skipped, 44 warnings in 45.40s ============= E: pybuild pybuild:388: test: plugin distutils failed with: exit code=1: cd /build/reproducible-path/heudiconv-0.11.6/.pybuild/cpython3_3.11_heudiconv/build; python3.11 -m pytest rm -fr -- /tmp/dh-xdg-rundir-Yivfvg5g dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13 make: *** [debian/rules:16: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/9909 and its subdirectories Mon Jan 22 05:59:51 UTC 2024 W: No second build log, what happened?