Thu May 18 14:19:53 UTC 2023 I: starting to build trinculo/bookworm/arm64 on jenkins on '2023-05-18 14:19' Thu May 18 14:19:53 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_12/8469/console.log Thu May 18 14:19:53 UTC 2023 I: Downloading source for bookworm/trinculo=0.96+dfsg-4 --2023-05-18 14:19:54-- http://cdn-fastly.deb.debian.org/debian/pool/main/t/trinculo/trinculo_0.96%2bdfsg-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2076 (2.0K) [text/prs.lines.tag] Saving to: ‘trinculo_0.96+dfsg-4.dsc’ 0K .. 100% 223M=0s 2023-05-18 14:19:54 (223 MB/s) - ‘trinculo_0.96+dfsg-4.dsc’ saved [2076/2076] Thu May 18 14:19:54 UTC 2023 I: trinculo_0.96+dfsg-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: trinculo Binary: trinculo Architecture: any Version: 0.96+dfsg-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Nilesh Patra Homepage: https://sourceforge.net/projects/trinculo/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/trinculo Vcs-Git: https://salsa.debian.org/med-team/trinculo.git Testsuite: autopkgtest Testsuite-Triggers: python3-all Build-Depends: debhelper-compat (= 13), liblapack-dev Package-List: trinculo deb science optional arch=any Checksums-Sha1: ca26c603112c2607f800805e3596b03c020aaae7 61360 trinculo_0.96+dfsg.orig.tar.xz 41f0a6d865672204d3dc5fb82f891f86d4051bcd 13452 trinculo_0.96+dfsg-4.debian.tar.xz Checksums-Sha256: 51b73c31fe0ae52d96ea3f92ad4af7e9e35dba634200ad43428dc349b9b5767d 61360 trinculo_0.96+dfsg.orig.tar.xz d816557359930cc17c7961a5768a5c8ac4f5c1e2d1dc46da34fb25406666ad9a 13452 trinculo_0.96+dfsg-4.debian.tar.xz Files: 73fc14eef2714899d42f9ffb2608ddfe 61360 trinculo_0.96+dfsg.orig.tar.xz 07f92fb9e7e517661b4a58e26c195f47 13452 trinculo_0.96+dfsg-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmF+7CISHG5pbGVzaEBk ZWJpYW4ub3JnAAoJEAC650s0M2nxmdoQAJDcPJVSbNfZvw8ZmUcAFBJIWqAhW6XQ iMIB5dzyLYAlvwW4kFn0i0JqPhMh2jXof/qmhJ5ye34/jOZVf/vGKv676oJtE/D3 ZeWoBx9XdOz/5U+y7C/xBJe8LrVUMzCqFIHR+MK3ebEKg2HbkECg000lcStTR5Db eTsO4NPljgPuAHT6cGaFCndyoxyMdq7nRCrnoLudQQcXWI6zJqlhdqrelWMNJjwl 2DtY+AnAktdKnomZw0SB88WFMSZGuhH+c5iI7b5odDxWnTYz8x7AGEkffX6zMSch 3lfpASK1zyxFnLr0Oe4vnrfoqdb+psAfYAzWDUsIwS4dRt8LdLxMymlEVFc1SHT5 sWlzXzH7kRwSy+qFDBOSTgYCtfhfkvKZzjF0M8++yDfT8f+Z0B+sxyTQ0ch6DEGm Y2aoTaV24SzXhsMfLZm7En7YQwX9nJndjXHnhLPlVfrrXuz3QdANV92/rFa1P5Py s8CQZ/Hxq4qz2QYxBhEHB8HAKDd+RDUCMOEI+c2+uX6ovEMop+TFsMtnfDOBzMYy 99aBxbUZp9umwgvXZzFQeifS6MhRfCINu6buL21FlEEpiAaAPpdcdK63y1PEVBlx p50gT2ezWrH6+EPEK163nBdunaCXijDYtX1pDn8Uml0PQONpy1jJl3aa9C7eauPy MWmcdxyxd6Z3 =hpzC -----END PGP SIGNATURE----- Thu May 18 14:19:54 UTC 2023 I: Checking whether the package is not for us Thu May 18 14:19:54 UTC 2023 I: Starting 1st build on remote node codethink11-arm64.debian.net. Thu May 18 14:19:54 UTC 2023 I: Preparing to do remote build '1' on codethink11-arm64.debian.net. Thu May 18 14:21:16 UTC 2023 I: Deleting $TMPDIR on codethink11-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jun 19 08:42:57 -12 2024 I: pbuilder-time-stamp: 1718829777 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [trinculo_0.96+dfsg-4.dsc] I: copying [./trinculo_0.96+dfsg.orig.tar.xz] I: copying [./trinculo_0.96+dfsg-4.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Oct 31 07:18:58 2021 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./trinculo_0.96+dfsg-4.dsc: no acceptable signature found dpkg-source: info: extracting trinculo in trinculo-0.96+dfsg dpkg-source: info: unpacking trinculo_0.96+dfsg.orig.tar.xz dpkg-source: info: unpacking trinculo_0.96+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling.patch dpkg-source: info: applying gcc11.patch dpkg-source: info: applying fix-interpreter.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1619/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8 ' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1619' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ST12J7XX/pbuilderrc_14GP --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ST12J7XX/b1 --logfile b1/build.log trinculo_0.96+dfsg-4.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink11-arm64 4.15.0-211-generic #222-Ubuntu SMP Tue Apr 18 18:58:27 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 17 04:47 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1619/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), liblapack-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on liblapack-dev; however: Package liblapack-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu72{a} liblapack-dev{a} liblapack3{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 23.6 MB of archives. After unpacking 105 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 libblas3 arm64 3.11.0-2 [91.4 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 libblas-dev arm64 3.11.0-2 [97.6 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 libgfortran5 arm64 12.2.0-14 [340 kB] Get: 34 http://deb.debian.org/debian bookworm/main arm64 liblapack3 arm64 3.11.0-2 [1664 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 liblapack-dev arm64 3.11.0-2 [3065 kB] Fetched 23.6 MB in 4s (5885 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../02-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../22-libelf1_0.188-2.1_arm64.deb ... Unpacking libelf1:arm64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../24-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.2_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-12_arm64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../30-libblas3_3.11.0-2_arm64.deb ... Unpacking libblas3:arm64 (3.11.0-2) ... Selecting previously unselected package libblas-dev:arm64. Preparing to unpack .../31-libblas-dev_3.11.0-2_arm64.deb ... Unpacking libblas-dev:arm64 (3.11.0-2) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../32-libgfortran5_12.2.0-14_arm64.deb ... Unpacking libgfortran5:arm64 (12.2.0-14) ... Selecting previously unselected package liblapack3:arm64. Preparing to unpack .../33-liblapack3_3.11.0-2_arm64.deb ... Unpacking liblapack3:arm64 (3.11.0-2) ... Selecting previously unselected package liblapack-dev:arm64. Preparing to unpack .../34-liblapack-dev_3.11.0-2_arm64.deb ... Unpacking liblapack-dev:arm64 (3.11.0-2) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libicu72:arm64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:arm64 (3.11.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up autopoint (0.21-12) ... Setting up libgfortran5:arm64 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.2) ... Setting up libblas-dev:arm64 (3.11.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up liblapack3:arm64 (3.11.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up liblapack-dev:arm64 (3.11.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.11.4) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/trinculo-0.96+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../trinculo_0.96+dfsg-4_source.changes dpkg-buildpackage: info: source package trinculo dpkg-buildpackage: info: source version 0.96+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/trinculo-0.96+dfsg' aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/trinculo-0.96+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DLINUX -Isrc -o bin/trinculo src/trinculo.cpp -llapack -lpthread -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/build/trinculo-0.96+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/trinculo/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'trinculo' in '../trinculo_0.96+dfsg-4_arm64.deb'. dpkg-deb: building package 'trinculo-dbgsym' in '../trinculo-dbgsym_0.96+dfsg-4_arm64.deb'. dpkg-genbuildinfo --build=binary -O../trinculo_0.96+dfsg-4_arm64.buildinfo dpkg-genchanges --build=binary -O../trinculo_0.96+dfsg-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1619 and its subdirectories I: Current time: Wed Jun 19 08:44:14 -12 2024 I: pbuilder-time-stamp: 1718829854 Thu May 18 14:21:16 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink16-arm64.debian.net. Thu May 18 14:21:16 UTC 2023 I: Preparing to do remote build '2' on codethink16-arm64.debian.net. Thu May 18 14:22:40 UTC 2023 I: Deleting $TMPDIR on codethink16-arm64.debian.net. Thu May 18 14:22:41 UTC 2023 I: trinculo_0.96+dfsg-4_arm64.changes: Format: 1.8 Date: Mon, 01 Nov 2021 00:43:03 +0530 Source: trinculo Binary: trinculo trinculo-dbgsym Architecture: arm64 Version: 0.96+dfsg-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: trinculo - toolkit to carry out genetic association for multi-category pheno Closes: 997266 Changes: trinculo (0.96+dfsg-4) unstable; urgency=medium . * Add patch to fix FTBFS with gcc-11 (Closes: #997266) * Add myself as an uploader instead + Thanks Pranav, for your work so far * Bump debhelper compatibility level to 13 * Bump Standards-Version to 4.6.0 (no changes needed) * Port python2 scripts to python3 fix interpreter, fix bugs in them * Install trinculo in /usr/bin, not in /bin * Run testing.py file (vendored by upstream) as autopkgtest as well Checksums-Sha1: 0c5f3c2924ca6688751ddfdccfdf29071d036c1a 482376 trinculo-dbgsym_0.96+dfsg-4_arm64.deb 8c90443c31cb7da5609631d9ecdc62d8c6fbc646 5293 trinculo_0.96+dfsg-4_arm64.buildinfo 9f53c350bb7263cecd6a81f75bd810455245c002 83304 trinculo_0.96+dfsg-4_arm64.deb Checksums-Sha256: dcfce431d0019039adfa6d1b63546566cf95427638c7b7295562236b674fc5ef 482376 trinculo-dbgsym_0.96+dfsg-4_arm64.deb 5436236a7382c836e1868bbb68820de34976cc3b40cff0224cf3d98f1864658e 5293 trinculo_0.96+dfsg-4_arm64.buildinfo 36a320523a8007d57f06aa4bb66bef4049569d96ed4d4ff44c014220e2b06308 83304 trinculo_0.96+dfsg-4_arm64.deb Files: 46489d53284b5eb94e9b054e20903ea0 482376 debug optional trinculo-dbgsym_0.96+dfsg-4_arm64.deb 9738edcea7b965c4fba960b2a012a232 5293 science optional trinculo_0.96+dfsg-4_arm64.buildinfo 9d886c35dbd274f4fac1f6fea8c4d48b 83304 science optional trinculo_0.96+dfsg-4_arm64.deb Thu May 18 14:22:42 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ST12J7XX/trinculo_0.96+dfsg-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ST12J7XX/trinculo_0.96+dfsg-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ST12J7XX/trinculo_0.96+dfsg-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ST12J7XX/b1/trinculo_0.96+dfsg-4_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ST12J7XX/b2/trinculo_0.96+dfsg-4_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.311s) 0.311s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.022s) 0.022s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Thu May 18 14:22:43 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Thu May 18 14:22:43 UTC 2023 I: trinculo from bookworm built successfully and reproducibly on arm64. Thu May 18 14:22:44 UTC 2023 I: Submitting .buildinfo files to external archives: Thu May 18 14:22:44 UTC 2023 I: Submitting 8.0K b1/trinculo_0.96+dfsg-4_arm64.buildinfo.asc Thu May 18 14:22:45 UTC 2023 I: Submitting 8.0K b2/trinculo_0.96+dfsg-4_arm64.buildinfo.asc Thu May 18 14:22:46 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu May 18 14:22:46 UTC 2023 I: Done submitting .buildinfo files. Thu May 18 14:22:46 UTC 2023 I: Removing signed trinculo_0.96+dfsg-4_arm64.buildinfo.asc files: removed './b1/trinculo_0.96+dfsg-4_arm64.buildinfo.asc' removed './b2/trinculo_0.96+dfsg-4_arm64.buildinfo.asc'