Wed Apr 26 07:15:26 UTC 2023 I: starting to build sweed/bookworm/arm64 on jenkins on '2023-04-26 07:15' Wed Apr 26 07:15:26 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_31/10093/console.log Wed Apr 26 07:15:26 UTC 2023 I: Downloading source for bookworm/sweed=3.2.1+dfsg-5 --2023-04-26 07:15:27-- http://cdn-fastly.deb.debian.org/debian/pool/main/s/sweed/sweed_3.2.1%2bdfsg-5.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1978 (1.9K) [text/prs.lines.tag] Saving to: ‘sweed_3.2.1+dfsg-5.dsc’ 0K . 100% 128M=0s 2023-04-26 07:15:27 (128 MB/s) - ‘sweed_3.2.1+dfsg-5.dsc’ saved [1978/1978] Wed Apr 26 07:15:27 UTC 2023 I: sweed_3.2.1+dfsg-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: sweed Binary: sweed Architecture: any Version: 3.2.1+dfsg-5 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://sco.h-its.org/exelixis/web/software/sweed/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/sweed Vcs-Git: https://salsa.debian.org/med-team/sweed.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: sweed deb science optional arch=any Checksums-Sha1: fb8c433ac9b860a66bcbd3beab1f7b89ddb902e8 62064 sweed_3.2.1+dfsg.orig.tar.xz 19f4dc4dd4341e07ac13b455f4572dbcfbd30d2a 7524 sweed_3.2.1+dfsg-5.debian.tar.xz Checksums-Sha256: d93ca71debbb3d3c9b09aa9454ca594b25ab2e0eaaed156ade392cde5f00c2b3 62064 sweed_3.2.1+dfsg.orig.tar.xz b20406ef08aacf293d8b6518d2ed6bd861b52b0d022be6b42d9557280a3ad70b 7524 sweed_3.2.1+dfsg-5.debian.tar.xz Files: abce23d90404a755920a28eef53b2a6b 62064 sweed_3.2.1+dfsg.orig.tar.xz 1be267c2b63180209b45db8ea9fd7210 7524 sweed_3.2.1+dfsg-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl9plvMRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHVDQ/+NDck2oTfDM48CPsam2Ws6mTPZ9LJSNdt Trk7GasEIb2QlJthAI/4Q9CY1UHb2qYFEePp4TwLeqq3jhQBJVS2PrP1OKYceL5Z VR8CDtCzvYoK3ue0w/B/aB+sG8yRo08kgKIN0gHjW1biQGJyR1ARvy72IHDcQ+jq gHci4IA3zkkTKAnw8Q+V3qY1puQBxt7wA+qiH0ahcN2xf68NIxHPUOdLQrdK52kL VH8G9NlGjx/GFo5f5+1m9AV2ZpOQLhhl+szn9w7NhRbTgYr7pfbJAznidA933zQ0 H7SI0uEw+/36J8j2DfLS6lgmMwPvprViUH98kwcL5HCzyqkhQXvjn2+HLYJNhYy2 92gGFHKO+8lY8fjDLBA49GsGOl6GU1+0zdzINfMyUHa8yMy46Fb1AYhbJg7C7Nni arNmbxF6p7iw0J1P7vC/z4nhS9RY5uUnlsAcYtUMxpezMylE1456R3xQ1MeOzR/6 fnhcefGjgu42kApiUg1zeAbGBWw+fNTDesjkSJP9/Uxaqe6xThfg3uUEBfWj1MtU jl7NjAOOzyc35SDtjzuzzQW4ZxMKlbQDhyy0s/zqOVrcbT+hJu7yLofobRIZ6dW6 tjY93T/GZ3/3Rd0ZgUuGZ2f/gkP5SGBST8WAOlsbT8aXlw8VDUht5rfrFCu5atAw USQuZnqhLZM= =IZU4 -----END PGP SIGNATURE----- Wed Apr 26 07:15:27 UTC 2023 I: Checking whether the package is not for us Wed Apr 26 07:15:27 UTC 2023 I: Starting 1st build on remote node codethink16-arm64.debian.net. Wed Apr 26 07:15:27 UTC 2023 I: Preparing to do remote build '1' on codethink16-arm64.debian.net. Wed Apr 26 07:16:28 UTC 2023 I: Deleting $TMPDIR on codethink16-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Apr 25 19:15:31 -12 2023 I: pbuilder-time-stamp: 1682493331 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [sweed_3.2.1+dfsg-5.dsc] I: copying [./sweed_3.2.1+dfsg.orig.tar.xz] I: copying [./sweed_3.2.1+dfsg-5.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Sep 21 18:17:23 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./sweed_3.2.1+dfsg-5.dsc: no acceptable signature found dpkg-source: info: extracting sweed in sweed-3.2.1+dfsg dpkg-source: info: unpacking sweed_3.2.1+dfsg.orig.tar.xz dpkg-source: info: unpacking sweed_3.2.1+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc10.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying arm64.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4465/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4465' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.hLjDi15S/pbuilderrc_VnbA --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.hLjDi15S/b1 --logfile b1/build.log sweed_3.2.1+dfsg-5.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink16-arm64 4.15.0-209-generic #220-Ubuntu SMP Tue Mar 21 19:52:44 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 22 22:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4465/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 18.3 MB of archives. After unpacking 74.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Fetched 18.3 MB in 2s (8885 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../02-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../22-libelf1_0.188-2.1_arm64.deb ... Unpacking libelf1:arm64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../24-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.2_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-12_arm64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libicu72:arm64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-12) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.11.4) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/sweed-3.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sweed_3.2.1+dfsg-5_source.changes dpkg-buildpackage: info: source package sweed dpkg-buildpackage: info: source version 3.2.1+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Helmut Grohne dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/sweed-3.2.1+dfsg' dh_auto_clean rm -f *.o *~ SweeD make[1]: Leaving directory '/build/sweed-3.2.1+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/sweed-3.2.1+dfsg' dh_auto_build --buildsystem=makefile -- -f Makefile.gcc make -j8 "INSTALL=install --strip-program=true" -f Makefile.gcc make[2]: Entering directory '/build/sweed-3.2.1+dfsg' gcc -g -O2 -ffile-prefix-map=/build/sweed-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -g -c SweeD.c gcc -g -O2 -ffile-prefix-map=/build/sweed-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -g -c SweeD_Input.c gcc -g -O2 -ffile-prefix-map=/build/sweed-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -g -c SweeD_Kernel.c gcc -g -O2 -ffile-prefix-map=/build/sweed-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -g -c SweeD_SFS.c gcc -g -O2 -ffile-prefix-map=/build/sweed-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -g -c SweeD_CLR.c gcc -g -O2 -ffile-prefix-map=/build/sweed-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -g -c SweeD_BFGS.c SweeD_Input.c: In function 'findFirstAlignment': SweeD_Input.c:1009:17: warning: 'strncpy' specified bound 100 equals destination size [-Wstringop-truncation] 1009 | strncpy(VCF_alignment_name, *string, MAX_CHROM_NAME_VCF); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SweeD_Input.c: In function 'readLine_VCF': SweeD_Input.c:2672:41: warning: 'strncpy' specified bound 100 equals destination size [-Wstringop-truncation] 2672 | strncpy(VCF_alignment_name, *string, MAX_CHROM_NAME_VCF); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/sweed-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -g -o SweeD SweeD.o SweeD_Input.o SweeD_Kernel.o SweeD_SFS.o SweeD_CLR.o SweeD_BFGS.o -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/sweed-3.2.1+dfsg' make[1]: Leaving directory '/build/sweed-3.2.1+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/sweed/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'sweed-dbgsym' in '../sweed-dbgsym_3.2.1+dfsg-5_arm64.deb'. dpkg-deb: building package 'sweed' in '../sweed_3.2.1+dfsg-5_arm64.deb'. dpkg-genbuildinfo --build=binary -O../sweed_3.2.1+dfsg-5_arm64.buildinfo dpkg-genchanges --build=binary -O../sweed_3.2.1+dfsg-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4465 and its subdirectories I: Current time: Tue Apr 25 19:16:26 -12 2023 I: pbuilder-time-stamp: 1682493386 Wed Apr 26 07:16:29 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink13-arm64.debian.net. Wed Apr 26 07:16:29 UTC 2023 I: Preparing to do remote build '2' on codethink13-arm64.debian.net. Wed Apr 26 07:17:34 UTC 2023 I: Deleting $TMPDIR on codethink13-arm64.debian.net. Wed Apr 26 07:17:35 UTC 2023 I: sweed_3.2.1+dfsg-5_arm64.changes: Format: 1.8 Date: Tue, 22 Sep 2020 08:09:50 +0200 Source: sweed Binary: sweed sweed-dbgsym Architecture: arm64 Version: 3.2.1+dfsg-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Helmut Grohne Description: sweed - assessment of SNPs for their evolutionary advantage Closes: 970693 Changes: sweed (3.2.1+dfsg-5) unstable; urgency=medium . * Team upload. * Fix FTCBFS: Let dh_auto_build pass cross tools to make. (Closes: #970693) Checksums-Sha1: 52fb66c282f6c8ea86176f09b03c65b152d673b3 113540 sweed-dbgsym_3.2.1+dfsg-5_arm64.deb 9eeadb51c2737fef141bae926423e704e7ce5843 5135 sweed_3.2.1+dfsg-5_arm64.buildinfo 21a0686945def2a0d6b24e579341ce22e0bb0927 57324 sweed_3.2.1+dfsg-5_arm64.deb Checksums-Sha256: b02fcb72d92eccfe6ffaea2b0892fb407e65161efa53adfcb2a63039c7cfd71f 113540 sweed-dbgsym_3.2.1+dfsg-5_arm64.deb 8fcb7bb5627e3fadac30b93fc8664e5793a879bef340a18013bd0592447e44a6 5135 sweed_3.2.1+dfsg-5_arm64.buildinfo 9cc2914d324011e328678c6d383bf360fe801bfcc894de6b6f74009a49bfb5c0 57324 sweed_3.2.1+dfsg-5_arm64.deb Files: d9768dc84ef09a7eb48b707f70e3d341 113540 debug optional sweed-dbgsym_3.2.1+dfsg-5_arm64.deb 4e0b4b888d85c3fb86f89c16ddbbffa0 5135 science optional sweed_3.2.1+dfsg-5_arm64.buildinfo 69f912c61d09605aac452ca12f7bbefd 57324 science optional sweed_3.2.1+dfsg-5_arm64.deb Wed Apr 26 07:17:36 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.hLjDi15S/sweed_3.2.1+dfsg-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.hLjDi15S/sweed_3.2.1+dfsg-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.hLjDi15S/sweed_3.2.1+dfsg-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.hLjDi15S/b1/sweed_3.2.1+dfsg-5_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.hLjDi15S/b2/sweed_3.2.1+dfsg-5_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.356s) 0.356s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.018s) 0.018s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Wed Apr 26 07:17:37 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Wed Apr 26 07:17:37 UTC 2023 I: sweed from bookworm built successfully and reproducibly on arm64. Wed Apr 26 07:17:38 UTC 2023 I: Submitting .buildinfo files to external archives: Wed Apr 26 07:17:38 UTC 2023 I: Submitting 8.0K b1/sweed_3.2.1+dfsg-5_arm64.buildinfo.asc Wed Apr 26 07:17:40 UTC 2023 I: Submitting 8.0K b2/sweed_3.2.1+dfsg-5_arm64.buildinfo.asc Wed Apr 26 07:17:41 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Apr 26 07:17:41 UTC 2023 I: Done submitting .buildinfo files. Wed Apr 26 07:17:41 UTC 2023 I: Removing signed sweed_3.2.1+dfsg-5_arm64.buildinfo.asc files: removed './b1/sweed_3.2.1+dfsg-5_arm64.buildinfo.asc' removed './b2/sweed_3.2.1+dfsg-5_arm64.buildinfo.asc'