Sat Apr 15 04:17:55 UTC 2023 I: starting to build pbsim/bookworm/arm64 on jenkins on '2023-04-15 04:17' Sat Apr 15 04:17:55 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_23/26956/console.log Sat Apr 15 04:17:55 UTC 2023 I: Downloading source for bookworm/pbsim=1.0.3+git20180330.e014b1d+dfsg-3 --2023-04-15 04:17:55-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/pbsim/pbsim_1.0.3%2bgit20180330.e014b1d%2bdfsg-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2138 (2.1K) [text/prs.lines.tag] Saving to: ‘pbsim_1.0.3+git20180330.e014b1d+dfsg-3.dsc’ 0K .. 100% 61.2M=0s 2023-04-15 04:17:57 (61.2 MB/s) - ‘pbsim_1.0.3+git20180330.e014b1d+dfsg-3.dsc’ saved [2138/2138] Sat Apr 15 04:17:57 UTC 2023 I: pbsim_1.0.3+git20180330.e014b1d+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pbsim Binary: pbsim Architecture: any Version: 1.0.3+git20180330.e014b1d+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Sascha Steinbiss Homepage: https://github.com/pfaucon/PBSIM-PacBio-Simulator Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/pbsim Vcs-Git: https://salsa.debian.org/med-team/pbsim.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), asciidoctor Package-List: pbsim deb science optional arch=any Checksums-Sha1: 57c945ecc63de65e191c90197eeac530c95f428d 5305084 pbsim_1.0.3+git20180330.e014b1d+dfsg.orig.tar.xz 4758b6129c5f1aaf9a1121b59fd4c6f59fc2d815 80188 pbsim_1.0.3+git20180330.e014b1d+dfsg-3.debian.tar.xz Checksums-Sha256: 043fef0df0c32c34407241a3dda095be3f6248bcc013f49bac160d289df872aa 5305084 pbsim_1.0.3+git20180330.e014b1d+dfsg.orig.tar.xz cf0e59ee1818664aa9470d8ac4182b4eff94d01446a4a4e0a06520ad519ec7a0 80188 pbsim_1.0.3+git20180330.e014b1d+dfsg-3.debian.tar.xz Files: e2fd933c47e7ab290d65ed65d7b14499 5305084 pbsim_1.0.3+git20180330.e014b1d+dfsg.orig.tar.xz aa63d72483ace74a1a29e0398919e69c 80188 pbsim_1.0.3+git20180330.e014b1d+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmP+9x4RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFlUA/9GqTXpicyAbaiaeXRlol5tctJUH7plZyL bZG9Bcii2tvXvMqc1SI58C7Bw6BjJm2R5A4tFFRizYVyb2TXUs3hNxq+2olQHtuX MI8OSWGJutTJ+U2ojmi0KwI8jKCydkylNksKbk98Uk2UdeNN/kJC3iv8ItBjJoUm oF9UORmfXI5aT5HOP7mNaeU169bLPe+RC42W3hmBHK9dxqMQOPTMfba5T7yCUyae O8eLUUJjXrz22EuuZA/DC3MPMMjy0pqaOdU3CN5Gg+Qbci5j9IYWLjx0xL0f0A8B MvSDu1ChsAZ6K1L9R3rADibJGW67nmFB9H4NvltThNKKyz7aGKVgxgOn8ItxQtz+ A4ZLkWHWz7OYuGOdHKjp5Es16p8EJ5uEQYROoX06fU6ZEwpZvb5zADGdRTdIbbt0 WnMqD/rA/ydldFOTAjW9voJdzpAjlKlLeAa9mrA4iqEnzpHxstzXhYzGrub9Mm55 1DShfXvhR55u1TGwmF9+/sUQ8tgI2LFlk7SOwuw2vynpK+KggF/j2g0XrQz1pQ9m L7mF+zyG9CVk+CXCVv/PdyQ8bW/lJqtnEJh+U/vP+TY9wkbpcmPGkaPDdKpJGDtw sb1PPpfrGWCjkbt2QhSlf1ALne9MPWGnrsPx1xRKN9nM32jLxxs0GUAbtOydrJ7W /6XRdnQgjSY= =Gwdn -----END PGP SIGNATURE----- Sat Apr 15 04:17:57 UTC 2023 I: Checking whether the package is not for us Sat Apr 15 04:17:57 UTC 2023 I: Starting 1st build on remote node codethink14-arm64.debian.net. Sat Apr 15 04:17:57 UTC 2023 I: Preparing to do remote build '1' on codethink14-arm64.debian.net. Sat Apr 15 04:18:54 UTC 2023 I: Deleting $TMPDIR on codethink14-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Apr 14 16:18:02 -12 2023 I: pbuilder-time-stamp: 1681532282 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pbsim_1.0.3+git20180330.e014b1d+dfsg-3.dsc] I: copying [./pbsim_1.0.3+git20180330.e014b1d+dfsg.orig.tar.xz] I: copying [./pbsim_1.0.3+git20180330.e014b1d+dfsg-3.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Feb 28 18:56:30 2023 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pbsim_1.0.3+git20180330.e014b1d+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting pbsim in pbsim-1.0.3+git20180330.e014b1d+dfsg dpkg-source: info: unpacking pbsim_1.0.3+git20180330.e014b1d+dfsg.orig.tar.xz dpkg-source: info: unpacking pbsim_1.0.3+git20180330.e014b1d+dfsg-3.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1956/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1956' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZELvJqTU/pbuilderrc_QH1l --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZELvJqTU/b1 --logfile b1/build.log pbsim_1.0.3+git20180330.e014b1d+dfsg-3.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink14-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 12 22:50 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1956/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), asciidoctor dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on asciidoctor; however: Package asciidoctor is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: asciidoctor{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libdebhelper-perl{a} libedit2{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libruby{a} libruby3.1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} openssl{a} po-debconf{a} rake{a} ruby{a} ruby-asciidoctor{a} ruby-net-telnet{a} ruby-rubygems{a} ruby-sdbm{a} ruby-webrick{a} ruby-xmlrpc{a} ruby3.1{a} rubygems-integration{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-lato libarchive-cpio-perl libgpm2 libjs-jquery libltdl-dev libmail-sendmail-perl lynx wget zip 0 packages upgraded, 49 newly installed, 0 to remove and 0 not upgraded. Need to get 26.9 MB of archives. After unpacking 112 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 openssl arm64 3.0.8-1 [1373 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 ca-certificates all 20230311 [153 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 rubygems-integration all 1.18 [6704 B] Get: 14 http://deb.debian.org/debian bookworm/main arm64 rake all 13.0.6-3 [83.9 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 ruby-net-telnet all 0.2.0-1 [13.1 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 ruby-webrick all 1.8.1-1 [51.4 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 ruby-xmlrpc all 0.3.2-2 [24.4 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 libruby arm64 1:3.1 [4968 B] Get: 19 http://deb.debian.org/debian bookworm/main arm64 ruby-sdbm arm64 1.0.0-5+b1 [14.5 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libbsd0 arm64 0.11.7-2 [115 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 libedit2 arm64 3.1-20221030-2 [88.1 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 libncurses6 arm64 6.4-2 [94.0 kB] Get: 23 http://deb.debian.org/debian bookworm/main arm64 libyaml-0-2 arm64 0.2.5-1 [50.4 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 libruby3.1 arm64 3.1.2-7 [5248 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 ruby3.1 arm64 3.1.2-7 [663 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 ruby-rubygems all 3.3.15-2 [293 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 ruby arm64 1:3.1 [5868 B] Get: 28 http://deb.debian.org/debian bookworm/main arm64 ruby-asciidoctor all 2.0.18-2 [211 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 asciidoctor all 2.0.18-2 [86.6 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 34 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 36 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 37 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 38 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 39 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 40 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 41 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 42 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.1+b3 [619 kB] Get: 46 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 48 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 49 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Fetched 26.9 MB in 1s (41.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../01-openssl_3.0.8-1_arm64.deb ... Unpacking openssl (3.0.8-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../02-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../04-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../07-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../10-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package rubygems-integration. Preparing to unpack .../12-rubygems-integration_1.18_all.deb ... Unpacking rubygems-integration (1.18) ... Selecting previously unselected package rake. Preparing to unpack .../13-rake_13.0.6-3_all.deb ... Unpacking rake (13.0.6-3) ... Selecting previously unselected package ruby-net-telnet. Preparing to unpack .../14-ruby-net-telnet_0.2.0-1_all.deb ... Unpacking ruby-net-telnet (0.2.0-1) ... Selecting previously unselected package ruby-webrick. Preparing to unpack .../15-ruby-webrick_1.8.1-1_all.deb ... Unpacking ruby-webrick (1.8.1-1) ... Selecting previously unselected package ruby-xmlrpc. Preparing to unpack .../16-ruby-xmlrpc_0.3.2-2_all.deb ... Unpacking ruby-xmlrpc (0.3.2-2) ... Selecting previously unselected package libruby:arm64. Preparing to unpack .../17-libruby_1%3a3.1_arm64.deb ... Unpacking libruby:arm64 (1:3.1) ... Selecting previously unselected package ruby-sdbm:arm64. Preparing to unpack .../18-ruby-sdbm_1.0.0-5+b1_arm64.deb ... Unpacking ruby-sdbm:arm64 (1.0.0-5+b1) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../19-libbsd0_0.11.7-2_arm64.deb ... Unpacking libbsd0:arm64 (0.11.7-2) ... Selecting previously unselected package libedit2:arm64. Preparing to unpack .../20-libedit2_3.1-20221030-2_arm64.deb ... Unpacking libedit2:arm64 (3.1-20221030-2) ... Selecting previously unselected package libncurses6:arm64. Preparing to unpack .../21-libncurses6_6.4-2_arm64.deb ... Unpacking libncurses6:arm64 (6.4-2) ... Selecting previously unselected package libyaml-0-2:arm64. Preparing to unpack .../22-libyaml-0-2_0.2.5-1_arm64.deb ... Unpacking libyaml-0-2:arm64 (0.2.5-1) ... Selecting previously unselected package libruby3.1:arm64. Preparing to unpack .../23-libruby3.1_3.1.2-7_arm64.deb ... Unpacking libruby3.1:arm64 (3.1.2-7) ... Selecting previously unselected package ruby3.1. Preparing to unpack .../24-ruby3.1_3.1.2-7_arm64.deb ... Unpacking ruby3.1 (3.1.2-7) ... Selecting previously unselected package ruby-rubygems. Preparing to unpack .../25-ruby-rubygems_3.3.15-2_all.deb ... Unpacking ruby-rubygems (3.3.15-2) ... Selecting previously unselected package ruby. Preparing to unpack .../26-ruby_1%3a3.1_arm64.deb ... Unpacking ruby (1:3.1) ... Selecting previously unselected package ruby-asciidoctor. Preparing to unpack .../27-ruby-asciidoctor_2.0.18-2_all.deb ... Unpacking ruby-asciidoctor (2.0.18-2) ... Selecting previously unselected package asciidoctor. Preparing to unpack .../28-asciidoctor_2.0.18-2_all.deb ... Unpacking asciidoctor (2.0.18-2) ... Selecting previously unselected package m4. Preparing to unpack .../29-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../30-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../31-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../32-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../33-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../34-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../35-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../36-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../37-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../38-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../39-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../40-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../41-libelf1_0.188-2.1_arm64.deb ... Unpacking libelf1:arm64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../42-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../43-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../44-libxml2_2.9.14+dfsg-1.1+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.1+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../45-gettext_0.21-12_arm64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../46-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../47-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../48-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libicu72:arm64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:arm64 (0.2.5-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up autotools-dev (20220109.1) ... Setting up libncurses6:arm64 (6.4-2) ... Setting up ruby-net-telnet (0.2.0-1) ... Setting up autopoint (0.21-12) ... Setting up autoconf (2.71-3) ... Setting up ruby-webrick (1.8.1-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up openssl (3.0.8-1) ... Setting up libbsd0:arm64 (0.11.7-2) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up ruby-xmlrpc (0.3.2-2) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.1+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libedit2:arm64 (3.1-20221030-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up rubygems-integration (1.18) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.11.4) ... Setting up rake (13.0.6-3) ... Setting up libruby:arm64 (1:3.1) ... Setting up ruby-sdbm:arm64 (1.0.0-5+b1) ... Setting up libruby3.1:arm64 (3.1.2-7) ... Setting up ruby3.1 (3.1.2-7) ... Setting up ruby (1:3.1) ... Setting up ruby-asciidoctor (2.0.18-2) ... Setting up asciidoctor (2.0.18-2) ... Setting up ruby-rubygems (3.3.15-2) ... Processing triggers for libc-bin (2.36-8) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/pbsim-1.0.3+git20180330.e014b1d+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pbsim_1.0.3+git20180330.e014b1d+dfsg-3_source.changes dpkg-buildpackage: info: source package pbsim dpkg-buildpackage: info: source version 1.0.3+git20180330.e014b1d+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg' rm -f debian/pbsim.1 dh_auto_clean -- make[1]: Leaving directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:7: warning: The macro `AC_CONFIG_HEADER' is obsolete. configure.ac:7: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:7: the top level configure.ac:17: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:17: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:17: the top level configure.ac:21: warning: The macro `AC_HEADER_TIME' is obsolete. configure.ac:21: You should run autoupdate. ./lib/autoconf/headers.m4:743: AC_HEADER_TIME is expanded from... configure.ac:21: the top level configure.ac:12: installing './compile' configure.ac:24: installing './config.guess' configure.ac:24: installing './config.sub' configure.ac:8: installing './install-sh' configure.ac:8: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/time.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for limits.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for sys/time.h... (cached) yes checking for unistd.h... (cached) yes checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for GNU libc compatible malloc... yes checking for floor... no checking for gettimeofday... yes checking for memset... yes checking for pow... no checking for sqrt... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build make -j8 make[1]: Entering directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg' make all-recursive make[2]: Entering directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg' Making all in src make[3]: Entering directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg/src' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pbsim-1.0.3+git20180330.e014b1d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o helpers.o helpers.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pbsim-1.0.3+git20180330.e014b1d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o output.o output.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pbsim-1.0.3+git20180330.e014b1d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pbsim.o pbsim.cpp g++ -g -O2 -ffile-prefix-map=/build/pbsim-1.0.3+git20180330.e014b1d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o pbsim helpers.o output.o pbsim.o make[3]: Leaving directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg/src' make[3]: Entering directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg' make[3]: Leaving directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg' make[2]: Leaving directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg' make[1]: Leaving directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg' dh_auto_test make -j8 check "TESTSUITEFLAGS=-j8 --verbose" VERBOSE=1 make[1]: Entering directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg' Making check in src make[2]: Entering directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg/src' make[2]: Entering directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg' make[2]: Leaving directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg' make[1]: Leaving directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg' dh_auto_install -- make -j8 install DESTDIR=/build/pbsim-1.0.3\+git20180330.e014b1d\+dfsg/debian/pbsim AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg' Making install in src make[3]: Entering directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg/src' make[4]: Entering directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg/src' make[4]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg/debian/pbsim/usr/bin' /usr/bin/install -c pbsim '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg/debian/pbsim/usr/bin' make[4]: Leaving directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg/src' make[3]: Leaving directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg/src' make[3]: Entering directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg' make[4]: Entering directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg' make[3]: Leaving directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg' make[2]: Leaving directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg' mkdir -p debian/pbsim/usr/share/pbsim/models cp -p data/* debian/pbsim/usr/share/pbsim/models make[1]: Leaving directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg' debian/rules override_dh_installdocs make[1]: Entering directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg' mkdir -p debian/pbsim/usr/share/doc/pbsim/ cp README debian/pbsim/usr/share/doc/pbsim dh_installdocs -- make[1]: Leaving directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg' dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg' asciidoctor -a docdate='' -b manpage debian/pbsim.1.adoc dh_installman -- make[1]: Leaving directory '/build/pbsim-1.0.3+git20180330.e014b1d+dfsg' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'pbsim' in '../pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.deb'. dpkg-deb: building package 'pbsim-dbgsym' in '../pbsim-dbgsym_1.0.3+git20180330.e014b1d+dfsg-3_arm64.deb'. dpkg-genbuildinfo --build=binary -O../pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.buildinfo dpkg-genchanges --build=binary -O../pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1956 and its subdirectories I: Current time: Fri Apr 14 16:18:53 -12 2023 I: pbuilder-time-stamp: 1681532333 Sat Apr 15 04:18:55 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink13-arm64.debian.net. Sat Apr 15 04:18:55 UTC 2023 I: Preparing to do remote build '2' on codethink13-arm64.debian.net. Sat Apr 15 04:19:50 UTC 2023 I: Deleting $TMPDIR on codethink13-arm64.debian.net. Sat Apr 15 04:19:51 UTC 2023 I: pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.changes: Format: 1.8 Date: Wed, 01 Mar 2023 07:45:44 +0100 Source: pbsim Binary: pbsim pbsim-dbgsym Architecture: arm64 Version: 1.0.3+git20180330.e014b1d+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: pbsim - simulator for PacBio sequencing reads Changes: pbsim (1.0.3+git20180330.e014b1d+dfsg-3) unstable; urgency=medium . * Team upload. * Packaging update * Standards-Version: 4.6.2 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Update renamed lintian tag names in lintian overrides. * Set upstream metadata fields: Repository-Browse. Checksums-Sha1: a6ba12b291bb95be007758f131c67810a85241b5 45052 pbsim-dbgsym_1.0.3+git20180330.e014b1d+dfsg-3_arm64.deb 72367461cd688523f32bab0d9669fb7fc5a0b842 5807 pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.buildinfo 7f1792fa205a80c0bf2af49b0334d9c4ad4f47a7 24720 pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.deb Checksums-Sha256: d9b4af0c16e586cce6efe3f6221f25d9ec4f8c1a75992d72397d9e3cad24dbb3 45052 pbsim-dbgsym_1.0.3+git20180330.e014b1d+dfsg-3_arm64.deb 14d3c31dca7fff0665928dd5d77a6f2ebe9a063c6c09471c8c8b65ec974ff3bf 5807 pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.buildinfo d7eac974f6bcc843679de300e5462ea5eee40cc08bf15b96db3594da4e29baef 24720 pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.deb Files: 188ba97724d5731721a2c073476ba1aa 45052 debug optional pbsim-dbgsym_1.0.3+git20180330.e014b1d+dfsg-3_arm64.deb 511cb8c810c97231f41cb65b528e0c24 5807 science optional pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.buildinfo 4af6404c950d3512febf9a345339f269 24720 science optional pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.deb Sat Apr 15 04:19:55 UTC 2023 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ZELvJqTU/pbsim_1.0.3+git20180330.e014b1d+dfsg-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ZELvJqTU/pbsim_1.0.3+git20180330.e014b1d+dfsg-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ZELvJqTU/pbsim_1.0.3+git20180330.e014b1d+dfsg-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ZELvJqTU/b1/pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ZELvJqTU/b2/pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 4.215s) 4.215s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.079s) 0.079s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Sat Apr 15 04:20:00 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Sat Apr 15 04:20:00 UTC 2023 I: pbsim from bookworm built successfully and reproducibly on arm64. Sat Apr 15 04:20:04 UTC 2023 I: Submitting .buildinfo files to external archives: Sat Apr 15 04:20:04 UTC 2023 I: Submitting 8.0K b1/pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.buildinfo.asc Sat Apr 15 04:20:05 UTC 2023 I: Submitting 8.0K b2/pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.buildinfo.asc Sat Apr 15 04:20:06 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Apr 15 04:20:06 UTC 2023 I: Done submitting .buildinfo files. Sat Apr 15 04:20:06 UTC 2023 I: Removing signed pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.buildinfo.asc files: removed './b1/pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.buildinfo.asc' removed './b2/pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.buildinfo.asc'