Sat Apr 22 10:59:05 UTC 2023 I: starting to build ntcard/bookworm/arm64 on jenkins on '2023-04-22 10:58' Sat Apr 22 10:59:05 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_32/25046/console.log Sat Apr 22 10:59:05 UTC 2023 I: Downloading source for bookworm/ntcard=1.2.2+dfsg-5 --2023-04-22 10:59:06-- http://cdn-fastly.deb.debian.org/debian/pool/main/n/ntcard/ntcard_1.2.2%2bdfsg-5.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1444 (1.4K) [text/prs.lines.tag] Saving to: ‘ntcard_1.2.2+dfsg-5.dsc’ 0K . 100% 94.8M=0s 2023-04-22 10:59:06 (94.8 MB/s) - ‘ntcard_1.2.2+dfsg-5.dsc’ saved [1444/1444] Sat Apr 22 10:59:06 UTC 2023 I: ntcard_1.2.2+dfsg-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: ntcard Binary: ntcard Architecture: amd64 arm64 mips64el ppc64el ppc64 Version: 1.2.2+dfsg-5 Maintainer: Debian Med Packaging Team Uploaders: Nilesh Patra , Étienne Mollier Homepage: https://github.com/bcgsc/ntCard Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/ntcard Vcs-Git: https://salsa.debian.org/med-team/ntcard.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: ntcard deb science optional arch=amd64,arm64,mips64el,ppc64el,ppc64 Checksums-Sha1: 41dbffe6384de113dec420f1cb68f90969aa03db 62710 ntcard_1.2.2+dfsg.orig.tar.gz bd7ff2808d84e33c1ae98cb9db35dbeb9242311d 771696 ntcard_1.2.2+dfsg-5.debian.tar.xz Checksums-Sha256: 74d063a840f04ede0442c7ca061b569ac5423b9632beb120d80e283728ac5345 62710 ntcard_1.2.2+dfsg.orig.tar.gz 2e1ef3a603940656b1175760dc6f28da1c2d2b33684812b1723b22412e8ae128 771696 ntcard_1.2.2+dfsg-5.debian.tar.xz Files: 184d4ad9728fdc3c6a1f301e07d2fa20 62710 ntcard_1.2.2+dfsg.orig.tar.gz 569ddb7adadda3ce15d7c2f1ad4ab9ba 771696 ntcard_1.2.2+dfsg-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iHUEARYIAB0WIQSglbZu4JAkvuai8HIqJ5BL1yQ+2gUCY6AfmwAKCRAqJ5BL1yQ+ 2phGAP9j96AZXQl+CsLhnNSMzAnd5r+ASilw9/CMYy3w9mTYqwD/eD6uR+J5SXeb X8EeqHQSKNauLYnFWalhcARWEJyMEgU= =oBMZ -----END PGP SIGNATURE----- Sat Apr 22 10:59:06 UTC 2023 I: Checking whether the package is not for us Sat Apr 22 10:59:06 UTC 2023 I: Starting 1st build on remote node codethink16-arm64.debian.net. Sat Apr 22 10:59:06 UTC 2023 I: Preparing to do remote build '1' on codethink16-arm64.debian.net. Sat Apr 22 11:00:59 UTC 2023 I: Deleting $TMPDIR on codethink16-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Apr 21 22:59:11 -12 2023 I: pbuilder-time-stamp: 1682161151 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ntcard_1.2.2+dfsg-5.dsc] I: copying [./ntcard_1.2.2+dfsg.orig.tar.gz] I: copying [./ntcard_1.2.2+dfsg-5.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Dec 18 20:23:55 2022 -12 gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./ntcard_1.2.2+dfsg-5.dsc: no acceptable signature found dpkg-source: info: extracting ntcard in ntcard-1.2.2+dfsg dpkg-source: info: unpacking ntcard_1.2.2+dfsg.orig.tar.gz dpkg-source: info: unpacking ntcard_1.2.2+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-packaged-nthash.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/32047/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='32047' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.lDw5qlLQ/pbuilderrc_QKtp --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.lDw5qlLQ/b1 --logfile b1/build.log ntcard_1.2.2+dfsg-5.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink16-arm64 4.15.0-209-generic #220-Ubuntu SMP Tue Mar 21 19:52:44 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 19 22:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/32047/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 18.3 MB of archives. After unpacking 74.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.1+b3 [619 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Fetched 18.3 MB in 1s (32.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../02-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../22-libelf1_0.188-2.1_arm64.deb ... Unpacking libelf1:arm64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../24-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.1+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.1+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-12_arm64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libicu72:arm64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-12) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.1+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.11.4) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/ntcard-1.2.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ntcard_1.2.2+dfsg-5_source.changes dpkg-buildpackage: info: source package ntcard dpkg-buildpackage: info: source version 1.2.2+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:7: warning: The macro `AC_CONFIG_HEADER' is obsolete. configure.ac:7: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:7: the top level configure.ac:29: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:29: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:29: the top level configure.ac:38: warning: The macro `AC_FUNC_SETVBUF_REVERSED' is obsolete. Remove it and all references to SETVBUF_REVERSED. ./lib/autoconf/functions.m4:1766: AC_FUNC_SETVBUF_REVERSED is expanded from... configure.ac:38: the top level configure.ac:19: installing './compile' configure.ac:35: installing './config.guess' configure.ac:35: installing './config.sub' configure.ac:5: installing './install-sh' configure.ac:5: installing './missing' Makefile.am: installing './depcomp' debian/rules execute_before_dh_auto_configure make[1]: Entering directory '/build/ntcard-1.2.2+dfsg' cp -a debian/vendor/*.hpp /build/ntcard-1.2.2+dfsg make[1]: Leaving directory '/build/ntcard-1.2.2+dfsg' dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes ./configure: line 3675: test: syntax error: `-O2' unexpected checking for gawk... (cached) mawk checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking for ranlib... ranlib checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for vfork.h... no checking for dlfcn.h... yes checking for fcntl.h... yes checking for float.h... yes checking for limits.h... yes checking for stddef.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for sys/param.h... yes checking for zlib.h... no checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for dup2... yes checking for gethostname... yes checking for getopt_long... yes checking for getpagesize... yes checking for memset... yes checking for strdup... yes checking for strerror... yes checking for strtoul... yes checking for pid_t... yes checking for fork... yes checking for vfork... yes checking for vprintf... yes checking for working fork... yes checking for working vfork... (cached) yes checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for GNU libc compatible malloc... yes checking for working memcmp... yes checking for GNU libc compatible realloc... yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for ptrdiff_t... yes checking for mode_t... yes checking for pid_t... (cached) yes checking for size_t... yes checking for ssize_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for sqrt in -lm... yes checking for pow... yes checking for sqrt... yes checking for ceilf... yes checking for dlsym in -ldl... yes checking for gzwrite in -lz... no checking for g++ option to support OpenMP... -fopenmp checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating data/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build make -j8 make[1]: Entering directory '/build/ntcard-1.2.2+dfsg' make all-recursive make[2]: Entering directory '/build/ntcard-1.2.2+dfsg' Making all in data make[3]: Entering directory '/build/ntcard-1.2.2+dfsg/data' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/ntcard-1.2.2+dfsg/data' make[3]: Entering directory '/build/ntcard-1.2.2+dfsg' g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/ntcard-1.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ntcard-ntcard.o `test -f 'ntcard.cpp' || echo './'`ntcard.cpp g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/ntcard-1.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Common/nthll-Uncompress.o `test -f 'Common/Uncompress.cpp' || echo './'`Common/Uncompress.cpp g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/ntcard-1.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Common/nthll-SignalHandler.o `test -f 'Common/SignalHandler.cpp' || echo './'`Common/SignalHandler.cpp g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/ntcard-1.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Common/nthll-Fcontrol.o `test -f 'Common/Fcontrol.cpp' || echo './'`Common/Fcontrol.cpp g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/ntcard-1.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o nthll-nthll.o `test -f 'nthll.cpp' || echo './'`nthll.cpp g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/ntcard-1.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Common/ntcard-Uncompress.o `test -f 'Common/Uncompress.cpp' || echo './'`Common/Uncompress.cpp g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/ntcard-1.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Common/ntcard-SignalHandler.o `test -f 'Common/SignalHandler.cpp' || echo './'`Common/SignalHandler.cpp g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/ntcard-1.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Common/ntcard-Fcontrol.o `test -f 'Common/Fcontrol.cpp' || echo './'`Common/Fcontrol.cpp g++ -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/ntcard-1.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o nthll Common/nthll-Uncompress.o Common/nthll-SignalHandler.o Common/nthll-Fcontrol.o nthll-nthll.o -ldl -lm g++ -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/ntcard-1.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o ntcard Common/ntcard-Uncompress.o Common/ntcard-SignalHandler.o Common/ntcard-Fcontrol.o ntcard-ntcard.o -ldl -lm make[3]: Leaving directory '/build/ntcard-1.2.2+dfsg' make[2]: Leaving directory '/build/ntcard-1.2.2+dfsg' make[1]: Leaving directory '/build/ntcard-1.2.2+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/ntcard-1.2.2+dfsg' echo "I: Tests try to download external files, skip build time tests" I: Tests try to download external files, skip build time tests make[1]: Leaving directory '/build/ntcard-1.2.2+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/ntcard/ make -j8 install DESTDIR=/build/ntcard-1.2.2\+dfsg/debian/ntcard AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/ntcard-1.2.2+dfsg' Making install in data make[2]: Entering directory '/build/ntcard-1.2.2+dfsg/data' make[3]: Entering directory '/build/ntcard-1.2.2+dfsg/data' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/ntcard-1.2.2+dfsg/data' make[2]: Leaving directory '/build/ntcard-1.2.2+dfsg/data' make[2]: Entering directory '/build/ntcard-1.2.2+dfsg' make[3]: Entering directory '/build/ntcard-1.2.2+dfsg' /usr/bin/mkdir -p '/build/ntcard-1.2.2+dfsg/debian/ntcard/usr/bin' /usr/bin/mkdir -p '/build/ntcard-1.2.2+dfsg/debian/ntcard/usr/share/doc/ntcard' /usr/bin/install -c -m 644 ChangeLog CITATION.bib LICENSE README.md '/build/ntcard-1.2.2+dfsg/debian/ntcard/usr/share/doc/ntcard' /usr/bin/install -c ntcard nthll '/build/ntcard-1.2.2+dfsg/debian/ntcard/usr/bin' make[3]: Leaving directory '/build/ntcard-1.2.2+dfsg' make[2]: Leaving directory '/build/ntcard-1.2.2+dfsg' make[1]: Leaving directory '/build/ntcard-1.2.2+dfsg' dh_installdocs debian/rules execute_after_dh_installdocs make[1]: Entering directory '/build/ntcard-1.2.2+dfsg' find debian -name 'LICENSE' | xargs rm -rf make[1]: Leaving directory '/build/ntcard-1.2.2+dfsg' dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'ntcard-dbgsym' in '../ntcard-dbgsym_1.2.2+dfsg-5_arm64.deb'. dpkg-deb: building package 'ntcard' in '../ntcard_1.2.2+dfsg-5_arm64.deb'. dpkg-genbuildinfo --build=binary -O../ntcard_1.2.2+dfsg-5_arm64.buildinfo dpkg-genchanges --build=binary -O../ntcard_1.2.2+dfsg-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/32047 and its subdirectories I: Current time: Fri Apr 21 23:00:58 -12 2023 I: pbuilder-time-stamp: 1682161258 Sat Apr 22 11:01:00 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink15-arm64.debian.net. Sat Apr 22 11:01:00 UTC 2023 I: Preparing to do remote build '2' on codethink15-arm64.debian.net. Sat Apr 22 11:02:16 UTC 2023 I: Deleting $TMPDIR on codethink15-arm64.debian.net. Sat Apr 22 11:02:16 UTC 2023 I: ntcard_1.2.2+dfsg-5_arm64.changes: Format: 1.8 Date: Mon, 19 Dec 2022 13:50:13 +0530 Source: ntcard Binary: ntcard ntcard-dbgsym Architecture: arm64 Version: 1.2.2+dfsg-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: ntcard - Streaming algorithm to estimate cardinality in genomics datasets Changes: ntcard (1.2.2+dfsg-5) unstable; urgency=medium . [ Étienne Mollier ] * 32bits.patch: remove; build dependency nthash is not available on 32bits anymore. * d/salsa-ci.yml: disable tests on i386; bound to fail. . [ Nilesh Patra ] * Vendor required header files in d/vendor, patch buildsystem to pick these up * Remove builddep on libnthash-dev for time being, until ntcard is ported * nthash does not build on these due to btllib. Keep archs restricted in a hope that ntcard will port to nthash 2.3.0 someday. Checksums-Sha1: c9e48fcaebddc65840917382cbd7fc19ff0ae018 313184 ntcard-dbgsym_1.2.2+dfsg-5_arm64.deb f2000fbe2eedfd0f4d7f3208bddcd3ec3493843d 5148 ntcard_1.2.2+dfsg-5_arm64.buildinfo df36a4a465fd72b4eeec3d584fc3b43854b6dec0 38336 ntcard_1.2.2+dfsg-5_arm64.deb Checksums-Sha256: 52a4a4afa342b8158e0bf7eea69fe5513e0d4bac8b2a7d06939474e4c910197c 313184 ntcard-dbgsym_1.2.2+dfsg-5_arm64.deb 065362277b6cafa0894c1e1466d92fed52a479e91824d0b05b7d93a7dc3e9b7a 5148 ntcard_1.2.2+dfsg-5_arm64.buildinfo 64e84ffb30d5a58eb95c655a941f85e46ee5f16d50d8fc7a295135b68c55bfcb 38336 ntcard_1.2.2+dfsg-5_arm64.deb Files: 18164405f5afe9a963d63968a071ba1a 313184 debug optional ntcard-dbgsym_1.2.2+dfsg-5_arm64.deb 07c6395519a16a85bd91a16c30c7cee3 5148 science optional ntcard_1.2.2+dfsg-5_arm64.buildinfo 3541a5733c47cfe40669ba27a7a8ac46 38336 science optional ntcard_1.2.2+dfsg-5_arm64.deb Sat Apr 22 11:02:18 UTC 2023 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.lDw5qlLQ/ntcard_1.2.2+dfsg-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.lDw5qlLQ/ntcard_1.2.2+dfsg-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.lDw5qlLQ/ntcard_1.2.2+dfsg-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.lDw5qlLQ/b1/ntcard_1.2.2+dfsg-5_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.lDw5qlLQ/b2/ntcard_1.2.2+dfsg-5_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.410s) 0.410s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.023s) 0.023s 12 calls diffoscope.comparators.binary.FilesystemFile 0.001s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Sat Apr 22 11:02:19 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Sat Apr 22 11:02:19 UTC 2023 I: ntcard from bookworm built successfully and reproducibly on arm64. Sat Apr 22 11:02:20 UTC 2023 I: Submitting .buildinfo files to external archives: Sat Apr 22 11:02:20 UTC 2023 I: Submitting 8.0K b1/ntcard_1.2.2+dfsg-5_arm64.buildinfo.asc Sat Apr 22 11:02:21 UTC 2023 I: Submitting 8.0K b2/ntcard_1.2.2+dfsg-5_arm64.buildinfo.asc Sat Apr 22 11:02:22 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Apr 22 11:02:22 UTC 2023 I: Done submitting .buildinfo files. Sat Apr 22 11:02:22 UTC 2023 I: Removing signed ntcard_1.2.2+dfsg-5_arm64.buildinfo.asc files: removed './b1/ntcard_1.2.2+dfsg-5_arm64.buildinfo.asc' removed './b2/ntcard_1.2.2+dfsg-5_arm64.buildinfo.asc'