Mon May 15 23:31:24 UTC 2023 I: starting to build mash/bookworm/arm64 on jenkins on '2023-05-15 23:31' Mon May 15 23:31:24 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_5/27045/console.log Mon May 15 23:31:24 UTC 2023 I: Downloading source for bookworm/mash=2.3+dfsg-3 --2023-05-15 23:31:24-- http://cdn-fastly.deb.debian.org/debian/pool/main/m/mash/mash_2.3%2bdfsg-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2352 (2.3K) [text/prs.lines.tag] Saving to: ‘mash_2.3+dfsg-3.dsc’ 0K .. 100% 48.2M=0s 2023-05-15 23:31:25 (48.2 MB/s) - ‘mash_2.3+dfsg-3.dsc’ saved [2352/2352] Mon May 15 23:31:25 UTC 2023 I: mash_2.3+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: mash Binary: mash, libmash-dev, mash-doc Architecture: amd64 arm64 mips64el ppc64el s390x alpha ppc64 riscv64 all Version: 2.3+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Sascha Steinbiss Homepage: https://mash.readthedocs.io Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/mash Vcs-Git: https://salsa.debian.org/med-team/mash.git Testsuite: autopkgtest Build-Depends: debhelper (>= 13), debhelper-compat (= 13), capnproto, libcapnp-dev, libgsl-dev, zlib1g-dev, libmurmurhash-dev, pkg-config Build-Depends-Indep: python3-sphinx, libjs-mathjax, dh-sequence-sphinxdoc Package-List: libmash-dev deb libdevel optional arch=amd64,arm64,mips64el,ppc64el,s390x,alpha,ppc64,riscv64 mash deb science optional arch=amd64,arm64,mips64el,ppc64el,s390x,alpha,ppc64,riscv64 mash-doc deb doc optional arch=all Checksums-Sha1: 19dcf527103c58dcd139fd9fff675d15d530f420 3449368 mash_2.3+dfsg.orig.tar.xz 7d35c3c30851bcc5a28c80150fd2899f25e8c5be 2157516 mash_2.3+dfsg-3.debian.tar.xz Checksums-Sha256: c0ca5ce831e97d211df92ddf0dcd68d4478fa1ddcebf1f567b469b70b47f0776 3449368 mash_2.3+dfsg.orig.tar.xz cbec1e31e970318e521d0a19f3f0f7d654daf1384db66999ee054ec356a49013 2157516 mash_2.3+dfsg-3.debian.tar.xz Files: ff714b53a4d814ee3d1f122baf5a29e3 3449368 mash_2.3+dfsg.orig.tar.xz 48c1a277666291b7ecca8e1a2f219572 2157516 mash_2.3+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEWzS6WqtVB+kDQm6F6NN64vCfSHIFAmNBwPcACgkQ6NN64vCf SHKruw/+KHvIYJ3gHf2vv9qX6jJBJGMQs1oUZabapHsXojnpKBHU0SBsX521Ure0 j6vp8MwAJwLBJj9JFKDcZW7SbrczNUkgk095RTt02+8/3rSrHAdtSGCWP6Yom7E1 JjL78nmGNLPENCDJEDFeWnH5nz1vLqg64Lhom30KkZk9gs68dqrSnYaKsrIEfmPp alLj7F9h95U76vc+phiM76KABxAewTdJEnPQgknizvYp0CKEMU2gl8jI4RwvxWVW DWM9rEInEJY/A2+9DwYx0Itd3orH/33ygp/pjg4uHwhvs3rccKwY0SsgYN2vd8tp yHznB1/Lz1lQxQPdCEF+SO/AKjaVxxWw/crETSeOtwsDsBOP0MAQ0+zto9i5e/NU zxUdtfAFFpwZIz4g9mzZtzEEqVc+PB5qcmmjoXYW9Vq1foo/fftwAdINOT+TYQXz lswhrw28SY5FyvsLjTctXQYHu0mvK3Gnr7qKuA3VfWckKBmpQfZJtcFS9k7beGYW JVa4E4SauOCHNgrhlPLRW19mFadcLcCgKMsQyOlchYHyFU3t2UY+J4R1mmIrgOgx SMNiqw+XMZJjSLBW305H6v5t3E4o55v2NQ2FPKbRlXV/iY+HXq5cHXwcqXkDkvNJ IFcVt/p1YkxGeOxOB5AQXaPvPDdgnII2nmi2Xpko4kD9JYLsFsY= =Q9Yv -----END PGP SIGNATURE----- Mon May 15 23:31:25 UTC 2023 I: Checking whether the package is not for us Mon May 15 23:31:25 UTC 2023 I: Starting 1st build on remote node codethink10-arm64.debian.net. Mon May 15 23:31:25 UTC 2023 I: Preparing to do remote build '1' on codethink10-arm64.debian.net. Mon May 15 23:34:19 UTC 2023 I: Deleting $TMPDIR on codethink10-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 15 11:31:32 -12 2023 I: pbuilder-time-stamp: 1684193492 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mash_2.3+dfsg-3.dsc] I: copying [./mash_2.3+dfsg.orig.tar.xz] I: copying [./mash_2.3+dfsg-3.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Oct 8 06:27:03 2022 -12 gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./mash_2.3+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting mash in mash-2.3+dfsg dpkg-source: info: unpacking mash_2.3+dfsg.orig.tar.xz dpkg-source: info: unpacking mash_2.3+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying use_debian_mathjax.patch dpkg-source: info: applying drop_memcpy_wrapper.patch dpkg-source: info: applying link_dynamically_against_capnp.patch dpkg-source: info: applying parallel.patch dpkg-source: info: applying use_debian_packaged_libmurmurhash.patch dpkg-source: info: applying use-CXX-from-configure.patch dpkg-source: info: applying gcc-11.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/20240/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='20240' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.FTHiUxeS/pbuilderrc_UdAg --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.FTHiUxeS/b1 --logfile b1/build.log mash_2.3+dfsg-3.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink10-arm64 4.15.0-211-generic #222-Ubuntu SMP Tue Apr 18 18:58:27 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 13 22:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/20240/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 13), debhelper-compat (= 13), capnproto, libcapnp-dev, libgsl-dev, zlib1g-dev, libmurmurhash-dev, pkg-config, python3-sphinx, libjs-mathjax, dh-sequence-sphinxdoc dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 13); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on capnproto; however: Package capnproto is not installed. pbuilder-satisfydepends-dummy depends on libcapnp-dev; however: Package libcapnp-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libmurmurhash-dev; however: Package libmurmurhash-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on libjs-mathjax; however: Package libjs-mathjax is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-sphinxdoc; however: Package dh-sequence-sphinxdoc is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} capnproto{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fonts-mathjax{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcapnp-0.9.2{a} libcapnp-dev{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgsl-dev{a} libgsl27{a} libgslcblas0{a} libicu72{a} libjs-jquery{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libmagic-mgc{a} libmagic1{a} libmurmurhash-dev{a} libmurmurhash2{a} libpipeline1{a} libpkgconf3{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libssl-dev{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} openssl{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-distutils{a} python3-docutils{a} python3-idna{a} python3-imagesize{a} python3-jinja2{a} python3-lib2to3{a} python3-markupsafe{a} python3-minimal{a} python3-packaging{a} python3-pkg-resources{a} python3-pygments{a} python3-requests{a} python3-roman{a} python3-six{a} python3-snowballstemmer{a} python3-sphinx{a} python3-tz{a} python3-urllib3{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libjson-xs-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx python3-pil wget 0 packages upgraded, 90 newly installed, 0 to remove and 0 not upgraded. Need to get 51.7 MB of archives. After unpacking 245 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-minimal arm64 3.11.2-6 [806 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 python3.11-minimal arm64 3.11.2-6 [1858 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 python3-minimal arm64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 libreadline8 arm64 8.2-1.3 [155 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-stdlib arm64 3.11.2-6 [1747 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 python3.11 arm64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 libpython3-stdlib arm64 3.11.2-1+b1 [9296 B] Get: 11 http://deb.debian.org/debian bookworm/main arm64 python3 arm64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 sgml-base all 1.31 [15.4 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 openssl arm64 3.0.8-1 [1373 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 ca-certificates all 20230311 [153 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 23 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 libcapnp-0.9.2 arm64 0.9.2-2 [1127 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 capnproto arm64 0.9.2-2 [215 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 34 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 37 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 38 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 39 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 40 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 41 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 42 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 46 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 xml-core all 0.18+nmu1 [23.8 kB] Get: 48 http://deb.debian.org/debian bookworm/main arm64 docutils-common all 0.19+dfsg-6 [127 kB] Get: 49 http://deb.debian.org/debian bookworm/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 50 http://deb.debian.org/debian bookworm/main arm64 libssl-dev arm64 3.0.8-1 [2296 kB] Get: 51 http://deb.debian.org/debian bookworm/main arm64 libcapnp-dev arm64 0.9.2-2 [1691 kB] Get: 52 http://deb.debian.org/debian bookworm/main arm64 libgslcblas0 arm64 2.7.1+dfsg-3+b1 [82.3 kB] Get: 53 http://deb.debian.org/debian bookworm/main arm64 libgsl27 arm64 2.7.1+dfsg-3+b1 [824 kB] Get: 54 http://deb.debian.org/debian bookworm/main arm64 libgsl-dev arm64 2.7.1+dfsg-3+b1 [1035 kB] Get: 55 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 56 http://deb.debian.org/debian bookworm/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 57 http://deb.debian.org/debian bookworm/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 58 http://deb.debian.org/debian bookworm/main arm64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 59 http://deb.debian.org/debian bookworm/main arm64 libjson-perl all 4.10000-1 [87.5 kB] Get: 60 http://deb.debian.org/debian bookworm/main arm64 libmurmurhash2 arm64 1.5-3 [6112 B] Get: 61 http://deb.debian.org/debian bookworm/main arm64 libmurmurhash-dev arm64 1.5-3 [10.1 kB] Get: 62 http://deb.debian.org/debian bookworm/main arm64 libpkgconf3 arm64 1.8.1-1 [35.3 kB] Get: 63 http://deb.debian.org/debian bookworm/main arm64 pkgconf-bin arm64 1.8.1-1 [28.9 kB] Get: 64 http://deb.debian.org/debian bookworm/main arm64 pkgconf arm64 1.8.1-1 [25.9 kB] Get: 65 http://deb.debian.org/debian bookworm/main arm64 pkg-config arm64 1.8.1-1 [13.7 kB] Get: 66 http://deb.debian.org/debian bookworm/main arm64 python-babel-localedata all 2.10.3-1 [5615 kB] Get: 67 http://deb.debian.org/debian bookworm/main arm64 python3-alabaster all 0.7.12-1 [20.8 kB] Get: 68 http://deb.debian.org/debian bookworm/main arm64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 69 http://deb.debian.org/debian bookworm/main arm64 python3-tz all 2022.7.1-3 [30.1 kB] Get: 70 http://deb.debian.org/debian bookworm/main arm64 python3-babel all 2.10.3-1 [103 kB] Get: 71 http://deb.debian.org/debian bookworm/main arm64 python3-certifi all 2022.9.24-1 [153 kB] Get: 72 http://deb.debian.org/debian bookworm/main arm64 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get: 73 http://deb.debian.org/debian bookworm/main arm64 python3-charset-normalizer all 3.0.1-2 [49.3 kB] Get: 74 http://deb.debian.org/debian bookworm/main arm64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 75 http://deb.debian.org/debian bookworm/main arm64 python3-distutils all 3.11.2-3 [131 kB] Get: 76 http://deb.debian.org/debian bookworm/main arm64 python3-roman all 3.3-3 [9880 B] Get: 77 http://deb.debian.org/debian bookworm/main arm64 python3-docutils all 0.19+dfsg-6 [382 kB] Get: 78 http://deb.debian.org/debian bookworm/main arm64 python3-idna all 3.3-1 [39.4 kB] Get: 79 http://deb.debian.org/debian bookworm/main arm64 python3-imagesize all 1.4.1-1 [6688 B] Get: 80 http://deb.debian.org/debian bookworm/main arm64 python3-markupsafe arm64 2.1.2-1+b1 [13.3 kB] Get: 81 http://deb.debian.org/debian bookworm/main arm64 python3-jinja2 all 3.1.2-1 [119 kB] Get: 82 http://deb.debian.org/debian bookworm/main arm64 python3-packaging all 23.0-1 [32.5 kB] Get: 83 http://deb.debian.org/debian bookworm/main arm64 python3-pygments all 2.14.0+dfsg-1 [783 kB] Get: 84 http://deb.debian.org/debian bookworm/main arm64 python3-six all 1.16.0-4 [17.5 kB] Get: 85 http://deb.debian.org/debian bookworm/main arm64 python3-urllib3 all 1.26.12-1 [117 kB] Get: 86 http://deb.debian.org/debian bookworm/main arm64 python3-requests all 2.28.1+dfsg-1 [67.9 kB] Get: 87 http://deb.debian.org/debian bookworm/main arm64 python3-snowballstemmer all 2.2.0-2 [57.8 kB] Get: 88 http://deb.debian.org/debian bookworm/main arm64 sphinx-common all 5.3.0-4 [653 kB] Get: 89 http://deb.debian.org/debian bookworm/main arm64 python3-sphinx all 5.3.0-4 [549 kB] Get: 90 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] Fetched 51.7 MB in 2s (33.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.2-6) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.5.0-1_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. 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Unpacking libpython3-stdlib:arm64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20366 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_arm64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../01-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... 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Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up fonts-mathjax (2.7.9+dfsg-1) ... Setting up libicu72:arm64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libjs-mathjax (2.7.9+dfsg-1) ... Setting up libgslcblas0:arm64 (2.7.1+dfsg-3+b1) ... Setting up libmurmurhash2:arm64 (1.5-3) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up libgsl27:arm64 (2.7.1+dfsg-3+b1) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up python-babel-localedata (2.10.3-1) ... Setting up autotools-dev (20220109.1) ... Setting up libpkgconf3:arm64 (1.8.1-1) ... Setting up libssl-dev:arm64 (3.0.8-1) ... Setting up autopoint (0.21-12) ... Setting up pkgconf-bin (1.8.1-1) ... Setting up libcapnp-0.9.2:arm64 (0.9.2-2) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:arm64 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libjson-perl (4.10000-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up sgml-base (1.31) ... Setting up libmurmurhash-dev:arm64 (1.5-3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.0.8-1) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.2) ... Setting up libcapnp-dev:arm64 (0.9.2-2) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libgsl-dev (2.7.1+dfsg-3+b1) ... Setting up libtool (2.4.7-5) ... Setting up libreadline8:arm64 (8.2-1.3) ... Setting up pkgconf:arm64 (1.8.1-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up capnproto (0.9.2-2) ... Setting up pkg-config:arm64 (1.8.1-1) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up xml-core (0.18+nmu1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:arm64 (3.11.2-6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up sphinx-common (5.3.0-4) ... Setting up libpython3-stdlib:arm64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-markupsafe (2.1.2-1+b1) ... Setting up python3-tz (2022.7.1-3) ... Setting up python3-six (1.16.0-4) ... Setting up python3-roman (3.3-3) ... Setting up python3-jinja2 (3.1.2-1) ... Setting up python3-packaging (23.0-1) ... Setting up python3-certifi (2022.9.24-1) ... Setting up python3-snowballstemmer (2.2.0-2) ... Setting up python3-idna (3.3-1) ... Setting up python3-urllib3 (1.26.12-1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up python3-babel (2.10.3-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-charset-normalizer (3.0.1-2) ... Setting up python3-alabaster (0.7.12-1) ... Setting up python3-pygments (2.14.0+dfsg-1) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up python3-requests (2.28.1+dfsg-1) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.19+dfsg-6) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.19+dfsg-6) ... Setting up python3-sphinx (5.3.0-4) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/mash-2.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mash_2.3+dfsg-3_source.changes dpkg-buildpackage: info: source package mash dpkg-buildpackage: info: source version 2.3+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sascha Steinbiss dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/mash-2.3+dfsg' dh_auto_clean rm -rf /build/mash-2.3+dfsg/debian/sphinxdoc /build/mash-2.3+dfsg/debian/man make[1]: Leaving directory '/build/mash-2.3+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:89: warning: AC_OUTPUT should be used without arguments. configure.ac:89: You should run autoupdate. debian/rules override_dh_auto_configure make[1]: Entering directory '/build/mash-2.3+dfsg' dh_auto_configure -- --with-capnp=/usr --with-gsl=/usr --prefix=/build/mash-2.3+dfsg/debian/tmp/usr ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-capnp=/usr --with-gsl=/usr --prefix=/build/mash-2.3\+dfsg/debian/tmp/usr checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for zlib.h... yes checking for capnp... yes checking for capnp/common.h... yes checking for gsl/gsl_cdf.h... yes configure: creating ./config.status config.status: creating Makefile make[1]: Leaving directory '/build/mash-2.3+dfsg' dh_auto_build make -j8 make[1]: Entering directory '/build/mash-2.3+dfsg' cd src/mash/capnp;export PATH=/usr/bin/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games;capnp compile -I /usr/include -oc++ MinHash.capnp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/Command.o src/mash/Command.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandBounds.o src/mash/CommandBounds.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandContain.o src/mash/CommandContain.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandDistance.o src/mash/CommandDistance.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandTaxScreen.o src/mash/CommandTaxScreen.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandScreen.o src/mash/CommandScreen.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandTriangle.o src/mash/CommandTriangle.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandFind.o src/mash/CommandFind.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandInfo.o src/mash/CommandInfo.cpp In file included from src/mash/CommandTaxScreen.cpp:11: src/mash/taxdb.hpp: In member function ‘void mash::TaxDB::writeReport(FILE*, const std::unordered_map&, long unsigned int, long unsigned int, mash::TaxID, int)’: src/mash/taxdb.hpp:218:59: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 9 has type ‘mash::TaxID’ {aka ‘long unsigned int’} [-Wformat=] 218 | fprintf(FP, "%.4f\t%i\t%i\t%i\t%i\t%s\t%llu\t%s%s\n", | ~~~^ | | | long long unsigned int | %lu ...... 224 | taxon->rank.c_str(), taxID, std::string(2*depth, ' ').c_str(), taxon->name.c_str()); | ~~~~~ | | | mash::TaxID {aka long unsigned int} g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandPaste.o src/mash/CommandPaste.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandSketch.o src/mash/CommandSketch.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandList.o src/mash/CommandList.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/hash.o src/mash/hash.cpp src/mash/hash.cpp: In function ‘hash_u getHash(const char*, int, uint32_t, bool)’: src/mash/hash.cpp:23:24: warning: ‘void MurmurHash3_x64_128(const void*, int, uint32_t, void*)’ is deprecated [-Wdeprecated-declarations] 23 | MurmurHash3_x64_128(seq, length, seed, data); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/mash/hash.cpp:8: /usr/include/murmurhash.h:36:1: note: declared here 36 | MurmurHash3_x64_128(const void *data, int len, uint32_t seed, void *out); | ^~~~~~~~~~~~~~~~~~~ g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/HashList.o src/mash/HashList.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/HashPriorityQueue.o src/mash/HashPriorityQueue.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/HashSet.o src/mash/HashSet.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/MinHashHeap.o src/mash/MinHashHeap.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/mash.o src/mash/mash.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/Sketch.o src/mash/Sketch.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/sketchParameterSetup.o src/mash/sketchParameterSetup.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/capnp/MinHash.capnp.o src/mash/capnp/MinHash.capnp.c++ g++ -g -O2 -ffile-prefix-map=/build/mash-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o mash src/mash/Command.o src/mash/CommandBounds.o src/mash/CommandContain.o src/mash/CommandDistance.o src/mash/CommandTaxScreen.o src/mash/CommandScreen.o src/mash/CommandTriangle.o src/mash/CommandFind.o src/mash/CommandInfo.o src/mash/CommandPaste.o src/mash/CommandSketch.o src/mash/CommandList.o src/mash/hash.o src/mash/HashList.o src/mash/HashPriorityQueue.o src/mash/HashSet.o src/mash/MinHashHeap.o src/mash/mash.o src/mash/Sketch.o src/mash/sketchParameterSetup.o src/mash/capnp/MinHash.capnp.o -lkj -lcapnp -L/usr/lib -lgsl -lgslcblas -lstdc++ -lz -lm -lpthread -lmurmurhash -Wl,-z,relro -Wl,-z,now ar -cr libmash.a src/mash/Command.o src/mash/CommandBounds.o src/mash/CommandContain.o src/mash/CommandDistance.o src/mash/CommandTaxScreen.o src/mash/CommandScreen.o src/mash/CommandTriangle.o src/mash/CommandFind.o src/mash/CommandInfo.o src/mash/CommandPaste.o src/mash/CommandSketch.o src/mash/CommandList.o src/mash/hash.o src/mash/HashList.o src/mash/HashPriorityQueue.o src/mash/HashSet.o src/mash/MinHashHeap.o src/mash/mash.o src/mash/Sketch.o src/mash/sketchParameterSetup.o src/mash/capnp/MinHash.capnp.o ranlib libmash.a make[1]: Leaving directory '/build/mash-2.3+dfsg' debian/rules execute_after_dh_auto_build-indep make[1]: Entering directory '/build/mash-2.3+dfsg' sphinx-build doc/sphinx /build/mash-2.3+dfsg/debian/sphinxdoc Running Sphinx v5.3.0 making output directory... done WARNING: html_static_path entry '_static' does not exist building [mo]: targets for 0 po files that are out of date building [html]: targets for 5 source files that are out of date updating environment: [new config] 5 added, 0 changed, 0 removed reading sources... [ 20%] data reading sources... [ 40%] distances reading sources... [ 60%] index reading sources... [ 80%] sketches reading sources... [100%] tutorials /build/mash-2.3+dfsg/doc/sphinx/tutorials.rst:9: ERROR: Unknown directive type "download". .. download:: /build/mash-2.3+dfsg/doc/sphinx/tutorials.rst:10: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/mash-2.3+dfsg/doc/sphinx/tutorials.rst:66: ERROR: Unknown directive type "download". .. download:: /build/mash-2.3+dfsg/doc/sphinx/tutorials.rst:72: ERROR: Unknown directive type "download". .. download:: looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 20%] data writing output... [ 40%] distances writing output... [ 60%] index writing output... [ 80%] sketches writing output... [100%] tutorials generating indices... genindex done writing additional pages... search done copying images... [100%] logo_med.png copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 5 warnings. The HTML pages are in debian/sphinxdoc. make[1]: Leaving directory '/build/mash-2.3+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/mash-2.3+dfsg' dh_auto_test --no-parallel make -j1 test "TESTSUITEFLAGS=-j1 --verbose" VERBOSE=1 make[2]: Entering directory '/build/mash-2.3+dfsg' cd test ; ../mash sketch -o genomes.msh genome1.fna genome2.fna genome3.fna Sketching genome1.fna... Sketching genome2.fna... Sketching genome3.fna... Writing to genomes.msh... cd test ; ../mash sketch -r -I reads reads1.fastq reads2.fastq -o reads.msh Estimated genome size: 502360 Estimated coverage: 1.115 Writing to reads.msh... ./mash info -d test/genomes.msh > test/genomes.json ./mash info -d test/reads.msh > test/reads.json diff test/genomes.json test/ref/genomes.json diff test/reads.json test/ref/reads.json ./mash dist test/genomes.msh test/reads.msh > test/genomes.dist diff test/genomes.dist test/ref/genomes.dist cd test ; ../mash screen genomes.msh reads1.fastq reads2.fastq > screen Loading genomes.msh... 1419 distinct hashes. Streaming from 2 inputs... Estimated distinct k-mers in mixture: 502359 Summing shared... Computing coverage medians... Writing output... diff test/screen test/ref/screen make[2]: Leaving directory '/build/mash-2.3+dfsg' make[1]: Leaving directory '/build/mash-2.3+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j8 install DESTDIR=/build/mash-2.3\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/mash-2.3+dfsg' mkdir -p /build/mash-2.3+dfsg/debian/tmp/usr/share/man/man1 cp `pwd`/doc/man/*.1 /build/mash-2.3+dfsg/debian/tmp/usr/share/man/man1 mkdir -p /build/mash-2.3+dfsg/debian/tmp/usr/bin/ mkdir -p /build/mash-2.3+dfsg/debian/tmp/usr/lib/ mkdir -p /build/mash-2.3+dfsg/debian/tmp/usr/include/ mkdir -p /build/mash-2.3+dfsg/debian/tmp/usr/include/mash mkdir -p /build/mash-2.3+dfsg/debian/tmp/usr/include/mash/capnp cp `pwd`/mash /build/mash-2.3+dfsg/debian/tmp/usr/bin/ cp `pwd`/libmash.a /build/mash-2.3+dfsg/debian/tmp/usr/lib/ cp `pwd`/src/mash/*.h /build/mash-2.3+dfsg/debian/tmp/usr/include/mash/ cp `pwd`/src/mash/capnp/MinHash.capnp.h /build/mash-2.3+dfsg/debian/tmp/usr/include/mash/capnp/ make[1]: Leaving directory '/build/mash-2.3+dfsg' dh_install dh_installdocs dh_sphinxdoc -i dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libmash-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'mash-dbgsym' in '../mash-dbgsym_2.3+dfsg-3_arm64.deb'. dpkg-deb: building package 'mash' in '../mash_2.3+dfsg-3_arm64.deb'. dpkg-deb: building package 'libmash-dev' in '../libmash-dev_2.3+dfsg-3_arm64.deb'. dpkg-deb: building package 'mash-doc' in '../mash-doc_2.3+dfsg-3_all.deb'. dpkg-genbuildinfo --build=binary -O../mash_2.3+dfsg-3_arm64.buildinfo dpkg-genchanges --build=binary -O../mash_2.3+dfsg-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/20240 and its subdirectories I: Current time: Mon May 15 11:34:15 -12 2023 I: pbuilder-time-stamp: 1684193655 Mon May 15 23:34:20 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink9-arm64.debian.net. Mon May 15 23:34:20 UTC 2023 I: Preparing to do remote build '2' on codethink9-arm64.debian.net. Mon May 15 23:38:17 UTC 2023 I: Deleting $TMPDIR on codethink9-arm64.debian.net. Mon May 15 23:38:18 UTC 2023 I: mash_2.3+dfsg-3_arm64.changes: Format: 1.8 Date: Sat, 08 Oct 2022 17:41:49 +0000 Source: mash Binary: libmash-dev mash mash-dbgsym mash-doc Architecture: arm64 all Version: 2.3+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Sascha Steinbiss Description: libmash-dev - development headers and static library for Mash mash - fast genome and metagenome distance estimation using MinHash mash-doc - documentation for Mash Changes: mash (2.3+dfsg-3) unstable; urgency=medium . * Fix watchfile. * Bump Standards-Version. * Bump copyright date for debian/ directory. Checksums-Sha1: e7b854bebe311c4e4822bbf308bab48684cf4ff1 225148 libmash-dev_2.3+dfsg-3_arm64.deb 7d5f5d621290764eb92d1e71ce761abd70401afa 3426156 mash-dbgsym_2.3+dfsg-3_arm64.deb 77f968eb486091f007b7c5722a026684285d2496 74616 mash-doc_2.3+dfsg-3_all.deb 0cef8ea3037e7b485332cf87c2557a142d6f6ece 7595 mash_2.3+dfsg-3_arm64.buildinfo e03339b7df3afc92bbca75c75fa3d8c8a1d06e78 165276 mash_2.3+dfsg-3_arm64.deb Checksums-Sha256: 88d251877bbd9f8178f959a6928c8c1b4881e32ed798d5aba533d7a8dcedc537 225148 libmash-dev_2.3+dfsg-3_arm64.deb dfc186e32436bb4c6b67bf9638f2fb2268cea0567e5feaa934e833918f105def 3426156 mash-dbgsym_2.3+dfsg-3_arm64.deb 077e3d163870b0166afbbdb8564fa9a0281d9f37f33eac492dfd9cccc9b7e8fd 74616 mash-doc_2.3+dfsg-3_all.deb 117e7acf8c8e0e9b48835246bcc886c34160919bb472bedf28169a107999df92 7595 mash_2.3+dfsg-3_arm64.buildinfo 174a268a4f41722a0abc63698991700471ebb1c742eadf9f0e46945af2fee9c7 165276 mash_2.3+dfsg-3_arm64.deb Files: b59c285334322cd7cbce3a54bf11dd37 225148 libdevel optional libmash-dev_2.3+dfsg-3_arm64.deb 99b606676fbdeb390a921f75e35a9068 3426156 debug optional mash-dbgsym_2.3+dfsg-3_arm64.deb f68bfa394dfd8c0272238842f273064d 74616 doc optional mash-doc_2.3+dfsg-3_all.deb 309138b7aca35118da251f4d6c90c382 7595 science optional mash_2.3+dfsg-3_arm64.buildinfo 0953169d80e8105ef157056ac3806ca9 165276 science optional mash_2.3+dfsg-3_arm64.deb Mon May 15 23:38:26 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.FTHiUxeS/mash_2.3+dfsg-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.FTHiUxeS/mash_2.3+dfsg-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.FTHiUxeS/mash_2.3+dfsg-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.FTHiUxeS/b1/mash_2.3+dfsg-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.FTHiUxeS/b2/mash_2.3+dfsg-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 11.986s) 11.986s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.743s) 0.743s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Mon May 15 23:38:55 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Mon May 15 23:38:55 UTC 2023 I: mash from bookworm built successfully and reproducibly on arm64. Mon May 15 23:39:06 UTC 2023 I: Submitting .buildinfo files to external archives: Mon May 15 23:39:06 UTC 2023 I: Submitting 12K b1/mash_2.3+dfsg-3_arm64.buildinfo.asc Mon May 15 23:39:07 UTC 2023 I: Submitting 12K b2/mash_2.3+dfsg-3_arm64.buildinfo.asc Mon May 15 23:39:08 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon May 15 23:39:08 UTC 2023 I: Done submitting .buildinfo files. Mon May 15 23:39:08 UTC 2023 I: Removing signed mash_2.3+dfsg-3_arm64.buildinfo.asc files: removed './b1/mash_2.3+dfsg-3_arm64.buildinfo.asc' removed './b2/mash_2.3+dfsg-3_arm64.buildinfo.asc'