Sat Jun 10 01:59:58 UTC 2023 I: starting to build macs/bookworm/arm64 on jenkins on '2023-06-10 01:59' Sat Jun 10 01:59:58 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_5/649/console.log Sat Jun 10 01:59:58 UTC 2023 I: Downloading source for bookworm/macs=2.2.7.1-6 --2023-06-10 01:59:58-- http://cdn-fastly.deb.debian.org/debian/pool/main/m/macs/macs_2.2.7.1-6.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2102 (2.1K) [text/prs.lines.tag] Saving to: ‘macs_2.2.7.1-6.dsc’ 0K .. 100% 148M=0s 2023-06-10 01:59:58 (148 MB/s) - ‘macs_2.2.7.1-6.dsc’ saved [2102/2102] Sat Jun 10 01:59:58 UTC 2023 I: macs_2.2.7.1-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: macs Binary: macs Architecture: any Version: 2.2.7.1-6 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Andreas Tille Homepage: https://github.com/taoliu/MACS/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/macs Vcs-Git: https://salsa.debian.org/med-team/macs.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, cython3, help2man, procps Package-List: macs deb science optional arch=any Checksums-Sha1: 403dd5bb27a43d23b047e13f1ca7b46e7260bc76 134872405 macs_2.2.7.1.orig.tar.gz 789cc0e1a007a91691f345200010f93e5faf729c 1267984 macs_2.2.7.1-6.debian.tar.xz Checksums-Sha256: 8ba25c367b84e237487b01be947239bee80e3ba123afc5e6034c374413b32913 134872405 macs_2.2.7.1.orig.tar.gz 102e06583d97293be596b9914d8d0f14ec739135396de2add3cad17c8d4d4074 1267984 macs_2.2.7.1-6.debian.tar.xz Files: 3b669e6b847e5d2edd9b9ab4b58edae9 134872405 macs_2.2.7.1.orig.tar.gz 9cc375caceb060d84c91d0b368d20ff6 1267984 macs_2.2.7.1-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmN/VjARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEu3w/7Bwe20jn5/Fqwpr8TcN/w/A+56j30hWqx q526FVRV7ArHgIm7jj8m1HYFh90AgsdCCR2W/Ap911cJlS7GkirB8khQ+6F98ZVR HGjBph2Vx9VUzFDz4ujEao0Ao9kD7+VbK/qpRO9jllkU0FPJ4vhU1hrdYVyc1CXU H6HzOlFcXZthbQkdfyFgo33ddiKTSSN99sEMAah0e47K02RRVCpuyB80pXl11i+p cNY8lD88cihVpwRnK6NWuAfwsZREqYkVaFZrOjTVimLbAQQIsb8eMNPsCnbsZxrK 5R5ZWpEUHRUaWklYbMlz/JyipUXwfibLc4cTUIdddslRcaqrEqPdRlZVnevkQxlF lSpEtFORDV4JX/MYYMSputzVw9+YqAELkK/Hg193mNsVTSkiTqcebVaTFh3ue97P i1b4eO3WuVFRdgk405kMpyjNmkGcLPNPq4v6LZIO+kq+Y0/hWbiWoMHDKVRv5P4d BouttVZb+tDDS7NsZmefgCrDZgaBss8nmvjPrSGLg0lwb71sPUlSe1be1/FmVFg2 QsaFqSkiYVGs6LmMuHxEiOENXGvRRvMfGdGwGz4podFK3K2nNLreF5agr06U4TVf WZzcPatblx5hkgEdKjdYmbyGoAE/BhV5jzWboS+11sXWKHQEVHoScLVR72xUIde2 fzTcDu24hk8= =+RMQ -----END PGP SIGNATURE----- Sat Jun 10 01:59:58 UTC 2023 I: Checking whether the package is not for us Sat Jun 10 01:59:58 UTC 2023 I: Starting 1st build on remote node codethink10-arm64.debian.net. Sat Jun 10 01:59:58 UTC 2023 I: Preparing to do remote build '1' on codethink10-arm64.debian.net. Sat Jun 10 02:13:50 UTC 2023 I: Deleting $TMPDIR on codethink10-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Jun 9 14:00:23 -12 2023 I: pbuilder-time-stamp: 1686362423 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [macs_2.2.7.1-6.dsc] I: copying [./macs_2.2.7.1.orig.tar.gz] I: copying [./macs_2.2.7.1-6.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Nov 23 23:32:00 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./macs_2.2.7.1-6.dsc: no acceptable signature found dpkg-source: info: extracting macs in macs-2.2.7.1 dpkg-source: info: unpacking macs_2.2.7.1.orig.tar.gz dpkg-source: info: unpacking macs_2.2.7.1-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling dpkg-source: info: applying keep_debug dpkg-source: info: applying link-libm.patch dpkg-source: info: applying no-pip.patch dpkg-source: info: applying enable_python3.10.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/29820/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8 ' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='29820' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.drMNrwdO/pbuilderrc_40uc --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.drMNrwdO/b1 --logfile b1/build.log macs_2.2.7.1-6.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink10-arm64 4.15.0-212-generic #223-Ubuntu SMP Tue May 23 13:09:17 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 7 22:26 /bin -> usr/bin I: user script /srv/workspace/pbuilder/29820/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, cython3, help2man, procps dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19611 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pip; however: Package python3-pip is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on procps; however: Package procps is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libproc2-0{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} openssl{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-dev{a} python3-distutils{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pip{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pytest{a} python3-setuptools{a} python3-wheel{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx psmisc python3-pygments wget 0 packages upgraded, 79 newly installed, 0 to remove and 0 not upgraded. Need to get 45.8 MB of archives. After unpacking 197 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 liblocale-gettext-perl arm64 1.07-5 [15.1 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-minimal arm64 3.11.2-6 [806 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 python3.11-minimal arm64 3.11.2-6 [1858 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 python3-minimal arm64 3.11.2-1+b1 [26.3 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 media-types all 10.0.0 [26.1 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 readline-common all 8.2-1.3 [69.0 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 libreadline8 arm64 8.2-1.3 [155 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-stdlib arm64 3.11.2-6 [1747 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 python3.11 arm64 3.11.2-6 [572 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 libpython3-stdlib arm64 3.11.2-1+b1 [9296 B] Get: 12 http://deb.debian.org/debian bookworm/main arm64 python3 arm64 3.11.2-1+b1 [26.3 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 libproc2-0 arm64 2:4.0.2-3 [60.1 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 procps arm64 2:4.0.2-3 [698 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 openssl arm64 3.0.9-1 [1382 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 ca-certificates all 20230311 [153 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 23 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 cython3 arm64 0.29.32-2+b1 [1223 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 34 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 36 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 37 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 38 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 39 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 40 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 41 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 42 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 46 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 48 http://deb.debian.org/debian bookworm/main arm64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 49 http://deb.debian.org/debian bookworm/main arm64 python3-distutils all 3.11.2-3 [131 kB] Get: 50 http://deb.debian.org/debian bookworm/main arm64 dh-python all 5.20230130 [104 kB] Get: 51 http://deb.debian.org/debian bookworm/main arm64 help2man arm64 1.49.3 [198 kB] Get: 52 http://deb.debian.org/debian bookworm/main arm64 libblas3 arm64 3.11.0-2 [91.4 kB] Get: 53 http://deb.debian.org/debian bookworm/main arm64 libexpat1-dev arm64 2.5.0-1 [135 kB] Get: 54 http://deb.debian.org/debian bookworm/main arm64 libgfortran5 arm64 12.2.0-14 [340 kB] Get: 55 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 56 http://deb.debian.org/debian bookworm/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 57 http://deb.debian.org/debian bookworm/main arm64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 58 http://deb.debian.org/debian bookworm/main arm64 liblapack3 arm64 3.11.0-2 [1664 kB] Get: 59 http://deb.debian.org/debian bookworm/main arm64 libpython3.11 arm64 3.11.2-6 [1841 kB] Get: 60 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] Get: 61 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-dev arm64 3.11.2-6 [4395 kB] Get: 62 http://deb.debian.org/debian bookworm/main arm64 libpython3-dev arm64 3.11.2-1+b1 [9564 B] Get: 63 http://deb.debian.org/debian bookworm/main arm64 libpython3-all-dev arm64 3.11.2-1+b1 [1068 B] Get: 64 http://deb.debian.org/debian bookworm/main arm64 python3-all arm64 3.11.2-1+b1 [1064 B] Get: 65 http://deb.debian.org/debian bookworm/main arm64 python3.11-dev arm64 3.11.2-6 [617 kB] Get: 66 http://deb.debian.org/debian bookworm/main arm64 python3-dev arm64 3.11.2-1+b1 [26.2 kB] Get: 67 http://deb.debian.org/debian bookworm/main arm64 python3-all-dev arm64 3.11.2-1+b1 [1076 B] Get: 68 http://deb.debian.org/debian bookworm/main arm64 python3-attr all 22.2.0-1 [65.4 kB] Get: 69 http://deb.debian.org/debian bookworm/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 70 http://deb.debian.org/debian bookworm/main arm64 python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 71 http://deb.debian.org/debian bookworm/main arm64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 72 http://deb.debian.org/debian bookworm/main arm64 python3-numpy arm64 1:1.24.2-1 [4751 kB] Get: 73 http://deb.debian.org/debian bookworm/main arm64 python3-packaging all 23.0-1 [32.5 kB] Get: 74 http://deb.debian.org/debian bookworm/main arm64 python3-setuptools all 66.1.1-1 [521 kB] Get: 75 http://deb.debian.org/debian bookworm/main arm64 python3-wheel all 0.38.4-2 [30.8 kB] Get: 76 http://deb.debian.org/debian bookworm/main arm64 python3-pip all 23.0.1+dfsg-1 [1325 kB] Get: 77 http://deb.debian.org/debian bookworm/main arm64 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 78 http://deb.debian.org/debian bookworm/main arm64 python3-py all 1.11.0-1 [89.2 kB] Get: 79 http://deb.debian.org/debian bookworm/main arm64 python3-pytest all 7.2.1-2 [236 kB] Fetched 45.8 MB in 4s (10.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19611 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-5_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package libpython3.11-minimal:arm64. Preparing to unpack .../libpython3.11-minimal_3.11.2-6_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.2-6) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.5.0-1_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_arm64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:arm64 (3.11.2-6) ... Setting up libexpat1:arm64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19941 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_arm64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... 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Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:arm64 (3.11.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.5.0-1) ... Setting up libproc2-0:arm64 (2:4.0.2-3) ... Setting up autopoint (0.21-12) ... Setting up libgfortran5:arm64 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:arm64 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up procps (2:4.0.2-3) ... Setting up libsub-override-perl (0.09-4) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.0.9-1) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.2) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up liblapack3:arm64 (3.11.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libreadline8:arm64 (8.2-1.3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:arm64 (3.11.2-6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3-stdlib:arm64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libpython3.11:arm64 (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-packaging (23.0-1) ... Setting up libpython3.11-dev:arm64 (3.11.2-6) ... Setting up cython3 (0.29.32-2+b1) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-attr (22.2.0-1) ... Setting up libpython3-dev:arm64 (3.11.2-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-py (1.11.0-1) ... Setting up python3.11-dev (3.11.2-6) ... Setting up python3-pytest (7.2.1-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-wheel (0.38.4-2) ... Setting up libpython3-all-dev:arm64 (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-pip (23.0.1+dfsg-1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-all-dev (3.11.2-1+b1) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/macs-2.2.7.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../macs_2.2.7.1-6_source.changes dpkg-buildpackage: info: source package macs dpkg-buildpackage: info: source version 2.2.7.1-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 dpkg-source: info: using options from macs-2.2.7.1/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/ debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/macs-2.2.7.1' dh_auto_clean || true I: pybuild base:240: python3.11 setup.py clean running clean removing '/build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -Rf test/macs2.2.7.1-6* test/speedtest* rm -f debian/*.1 debian/*-man-include make[1]: Leaving directory '/build/macs-2.2.7.1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/macs-2.2.7.1' for pyx in $(find MACS2/ -name "*.pyx"); do \ rm -f ${pyx%%.pyx}.{h,c}; touch ${pyx}; done dh_auto_build I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/refinepeak_cmd.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/randsample_cmd.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/predictd_cmd.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/pileup_cmd.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/filterdup_cmd.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/diffpeak_cmd.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/cmbreps_cmd.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/callpeak_cmd.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/bdgpeakcall_cmd.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/bdgopt_cmd.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/bdgdiff_cmd.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/bdgcmp_cmd.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/bdgbroadcall_cmd.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/__init__.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/OutputWriter.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/OptValidator.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/Constants.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 creating /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO copying MACS2/IO/__init__.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO copying MACS2/khash.pxd -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/cPosValCalculation.pxd -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 running build_ext cythoning MACS2/Prob.pyx to MACS2/Prob.c cythoning MACS2/IO/Parser.pyx to MACS2/IO/Parser.c cythoning MACS2/Pileup.pyx to MACS2/Pileup.c cythoning MACS2/PeakModel.pyx to MACS2/PeakModel.c cythoning MACS2/PeakDetect.pyx to MACS2/PeakDetect.c cythoning MACS2/Signal.pyx to MACS2/Signal.c cythoning MACS2/IO/PeakIO.pyx to MACS2/IO/PeakIO.c cythoning MACS2/IO/BedGraphIO.pyx to MACS2/IO/BedGraphIO.c cythoning MACS2/IO/FixWidthTrack.pyx to MACS2/IO/FixWidthTrack.c cythoning MACS2/IO/PairedEndTrack.pyx to MACS2/IO/PairedEndTrack.c cythoning MACS2/IO/BedGraph.pyx to MACS2/IO/BedGraph.c cythoning MACS2/IO/ScoreTrack.pyx to MACS2/IO/ScoreTrack.c cythoning MACS2/IO/CallPeakUnit.pyx to MACS2/IO/CallPeakUnit.c building 'MACS2.Prob' extension creating build creating build/temp.linux-arm64-cpython-311 creating build/temp.linux-arm64-cpython-311/MACS2 aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/Prob.c -o build/temp.linux-arm64-cpython-311/MACS2/Prob.o -w -O3 -ffast-math aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-cpython-311/MACS2/Prob.o -L/usr/lib/aarch64-linux-gnu -lm -o /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/Prob.cpython-311-aarch64-linux-gnu.so building 'MACS2.IO.Parser' extension creating build/temp.linux-arm64-cpython-311/MACS2/IO aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/IO/Parser.c -o build/temp.linux-arm64-cpython-311/MACS2/IO/Parser.o -w -O3 -ffast-math aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-cpython-311/MACS2/IO/Parser.o -L/usr/lib/aarch64-linux-gnu -o /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/Parser.cpython-311-aarch64-linux-gnu.so building 'MACS2.Pileup' extension aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/Pileup.c -o build/temp.linux-arm64-cpython-311/MACS2/Pileup.o -w -O3 -ffast-math aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/cPosValCalculation.c -o build/temp.linux-arm64-cpython-311/MACS2/cPosValCalculation.o -w -O3 -ffast-math aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-cpython-311/MACS2/Pileup.o build/temp.linux-arm64-cpython-311/MACS2/cPosValCalculation.o -L/usr/lib/aarch64-linux-gnu -o /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/Pileup.cpython-311-aarch64-linux-gnu.so building 'MACS2.PeakModel' extension aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/PeakModel.c -o build/temp.linux-arm64-cpython-311/MACS2/PeakModel.o -w -O3 -ffast-math aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-cpython-311/MACS2/PeakModel.o -L/usr/lib/aarch64-linux-gnu -o /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/PeakModel.cpython-311-aarch64-linux-gnu.so building 'MACS2.PeakDetect' extension aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c MACS2/PeakDetect.c -o build/temp.linux-arm64-cpython-311/MACS2/PeakDetect.o -w -O3 -ffast-math aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-cpython-311/MACS2/PeakDetect.o -L/usr/lib/aarch64-linux-gnu -o /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/PeakDetect.cpython-311-aarch64-linux-gnu.so building 'MACS2.Signal' extension aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/Signal.c -o build/temp.linux-arm64-cpython-311/MACS2/Signal.o -w -O3 -ffast-math aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-cpython-311/MACS2/Signal.o -L/usr/lib/aarch64-linux-gnu -o /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/Signal.cpython-311-aarch64-linux-gnu.so building 'MACS2.IO.PeakIO' extension aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c MACS2/IO/PeakIO.c -o build/temp.linux-arm64-cpython-311/MACS2/IO/PeakIO.o -w -O3 -ffast-math aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-cpython-311/MACS2/IO/PeakIO.o -L/usr/lib/aarch64-linux-gnu -o /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/PeakIO.cpython-311-aarch64-linux-gnu.so building 'MACS2.IO.BedGraphIO' extension aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c MACS2/IO/BedGraphIO.c -o build/temp.linux-arm64-cpython-311/MACS2/IO/BedGraphIO.o -w -O3 -ffast-math aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-cpython-311/MACS2/IO/BedGraphIO.o -L/usr/lib/aarch64-linux-gnu -o /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/BedGraphIO.cpython-311-aarch64-linux-gnu.so building 'MACS2.IO.FixWidthTrack' extension aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/IO/FixWidthTrack.c -o build/temp.linux-arm64-cpython-311/MACS2/IO/FixWidthTrack.o -w -O3 -ffast-math aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-cpython-311/MACS2/IO/FixWidthTrack.o -L/usr/lib/aarch64-linux-gnu -o /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/FixWidthTrack.cpython-311-aarch64-linux-gnu.so building 'MACS2.IO.PairedEndTrack' extension aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/IO/PairedEndTrack.c -o build/temp.linux-arm64-cpython-311/MACS2/IO/PairedEndTrack.o -w -O3 -ffast-math aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-cpython-311/MACS2/IO/PairedEndTrack.o -L/usr/lib/aarch64-linux-gnu -o /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/PairedEndTrack.cpython-311-aarch64-linux-gnu.so building 'MACS2.IO.BedGraph' extension aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c MACS2/IO/BedGraph.c -o build/temp.linux-arm64-cpython-311/MACS2/IO/BedGraph.o -w -O3 -ffast-math aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-cpython-311/MACS2/IO/BedGraph.o -L/usr/lib/aarch64-linux-gnu -lm -o /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/BedGraph.cpython-311-aarch64-linux-gnu.so building 'MACS2.IO.ScoreTrack' extension aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/IO/ScoreTrack.c -o build/temp.linux-arm64-cpython-311/MACS2/IO/ScoreTrack.o -w -O3 -ffast-math aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-cpython-311/MACS2/IO/ScoreTrack.o -L/usr/lib/aarch64-linux-gnu -lm -o /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/ScoreTrack.cpython-311-aarch64-linux-gnu.so building 'MACS2.IO.CallPeakUnit' extension aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/IO/CallPeakUnit.c -o build/temp.linux-arm64-cpython-311/MACS2/IO/CallPeakUnit.o -w -O3 -ffast-math aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-cpython-311/MACS2/IO/CallPeakUnit.o -L/usr/lib/aarch64-linux-gnu -lm -o /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/CallPeakUnit.cpython-311-aarch64-linux-gnu.so running build_scripts creating build/scripts-3.11 copying and adjusting bin/macs2 -> build/scripts-3.11 changing mode of build/scripts-3.11/macs2 from 644 to 755 PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS2/build/ help2man \ --no-discard-stderr --no-info \ --name "macs2 \- Model\-based Analysis for ChIP\-Sequencing" "python3 bin/macs2" > debian/macs2.1 for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do printf \ "[NAME]\nmacs2_${subcommand} \- Model\-based Analysis for ChIP\-Sequencing\n" \ > debian/macs2_${subcommand}-man-include; done for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do \ PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS2/build/ help2man \ --no-discard-stderr --no-info --version-string="2.2.7.1" \ --include debian/macs2_${subcommand}-man-include \ "python3 bin/macs2 ${subcommand}" > \ debian/macs2_${subcommand}.1; done make[1]: Leaving directory '/build/macs-2.2.7.1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/macs-2.2.7.1' dh_auto_test I: pybuild base:240: cd /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build; python3.11 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack rootdir: /build/macs-2.2.7.1 collected 42 items test/test_BedGraph.py .... [ 9%] test/test_FixWidthTrack.py .... [ 19%] test/test_PairedEndTrack.py .... [ 28%] test/test_Parser.py ... [ 35%] test/test_PeakIO.py ... [ 42%] test/test_Pileup.py .. [ 47%] test/test_Prob.py ................ [ 85%] test/test_ScoreTrack.py .... [ 95%] test/test_Signal.py s. [100%] ======================== 41 passed, 1 skipped in 0.81s ========================= make[1]: Leaving directory '/build/macs-2.2.7.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/macs/ -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/macs-2.2.7.1/debian/macs running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running build_ext skipping 'MACS2/Prob.c' Cython extension (up-to-date) skipping 'MACS2/IO/Parser.c' Cython extension (up-to-date) skipping 'MACS2/Pileup.c' Cython extension (up-to-date) skipping 'MACS2/PeakModel.c' Cython extension (up-to-date) skipping 'MACS2/PeakDetect.c' Cython extension (up-to-date) skipping 'MACS2/Signal.c' Cython extension (up-to-date) skipping 'MACS2/IO/PeakIO.c' Cython extension (up-to-date) skipping 'MACS2/IO/BedGraphIO.c' Cython extension (up-to-date) skipping 'MACS2/IO/FixWidthTrack.c' Cython extension (up-to-date) skipping 'MACS2/IO/PairedEndTrack.c' Cython extension (up-to-date) skipping 'MACS2/IO/BedGraph.c' Cython extension (up-to-date) skipping 'MACS2/IO/ScoreTrack.c' Cython extension (up-to-date) skipping 'MACS2/IO/CallPeakUnit.c' Cython extension (up-to-date) running build_scripts running install_lib creating /build/macs-2.2.7.1/debian/macs/usr creating /build/macs-2.2.7.1/debian/macs/usr/lib creating /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11 creating /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages creating /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 creating /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__ copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/Constants.cpython-311.pyc -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__ copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/__init__.cpython-311.pyc -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__ copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/Signal.cpython-311-aarch64-linux-gnu.so -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/PeakDetect.cpython-311-aarch64-linux-gnu.so -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/PeakModel.cpython-311-aarch64-linux-gnu.so -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/Pileup.cpython-311-aarch64-linux-gnu.so -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/Prob.cpython-311-aarch64-linux-gnu.so -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/cPosValCalculation.pxd -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/khash.pxd -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 creating /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO creating /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO/__pycache__ copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/__pycache__/__init__.cpython-311.pyc -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO/__pycache__ copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/CallPeakUnit.cpython-311-aarch64-linux-gnu.so -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/ScoreTrack.cpython-311-aarch64-linux-gnu.so -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/BedGraph.cpython-311-aarch64-linux-gnu.so -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/PairedEndTrack.cpython-311-aarch64-linux-gnu.so -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/FixWidthTrack.cpython-311-aarch64-linux-gnu.so -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/BedGraphIO.cpython-311-aarch64-linux-gnu.so -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/PeakIO.cpython-311-aarch64-linux-gnu.so -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/Parser.cpython-311-aarch64-linux-gnu.so -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/__init__.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/Constants.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/OptValidator.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/OutputWriter.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/__init__.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/bdgbroadcall_cmd.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/bdgcmp_cmd.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/bdgdiff_cmd.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/bdgopt_cmd.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/bdgpeakcall_cmd.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/callpeak_cmd.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/cmbreps_cmd.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/diffpeak_cmd.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/filterdup_cmd.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/pileup_cmd.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/predictd_cmd.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/randsample_cmd.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/refinepeak_cmd.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO/__init__.py to __init__.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/Constants.py to Constants.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/OptValidator.py to OptValidator.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/OutputWriter.py to OutputWriter.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__init__.py to __init__.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/bdgbroadcall_cmd.py to bdgbroadcall_cmd.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/bdgcmp_cmd.py to bdgcmp_cmd.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/bdgdiff_cmd.py to bdgdiff_cmd.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/bdgopt_cmd.py to bdgopt_cmd.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/bdgpeakcall_cmd.py to bdgpeakcall_cmd.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/callpeak_cmd.py to callpeak_cmd.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/cmbreps_cmd.py to cmbreps_cmd.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/diffpeak_cmd.py to diffpeak_cmd.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/filterdup_cmd.py to filterdup_cmd.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/pileup_cmd.py to pileup_cmd.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/predictd_cmd.py to predictd_cmd.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/randsample_cmd.py to randsample_cmd.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/refinepeak_cmd.py to refinepeak_cmd.cpython-311.pyc running install_egg_info running egg_info creating MACS2.egg-info writing MACS2.egg-info/PKG-INFO writing dependency_links to MACS2.egg-info/dependency_links.txt writing requirements to MACS2.egg-info/requires.txt writing top-level names to MACS2.egg-info/top_level.txt writing manifest file 'MACS2.egg-info/SOURCES.txt' reading manifest file 'MACS2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching '.gitignore' warning: no previously-included files found matching '.travis.yml' no previously-included directories found matching '.github' no previously-included directories found matching 'DOCKER' adding license file 'LICENSE' writing manifest file 'MACS2.egg-info/SOURCES.txt' Copying MACS2.egg-info to /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2-2.2.7.1.egg-info Skipping SOURCES.txt running install_scripts creating /build/macs-2.2.7.1/debian/macs/usr/bin copying build/scripts-3.11/macs2 -> /build/macs-2.2.7.1/debian/macs/usr/bin changing mode of /build/macs-2.2.7.1/debian/macs/usr/bin/macs2 to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz: debian/macs/usr/lib/python3/dist-packages/MACS2/IO/Parser.cpython-311-aarch64-linux-gnu.so: DWARF compression not beneficial - old size 817504 new size 819202 dwz: debian/macs/usr/lib/python3/dist-packages/MACS2/IO/PeakIO.cpython-311-aarch64-linux-gnu.so: DWARF compression not beneficial - old size 814069 new size 814844 dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'macs' in '../macs_2.2.7.1-6_arm64.deb'. dpkg-deb: building package 'macs-dbgsym' in '../macs-dbgsym_2.2.7.1-6_arm64.deb'. dpkg-genbuildinfo --build=binary -O../macs_2.2.7.1-6_arm64.buildinfo dpkg-genchanges --build=binary -O../macs_2.2.7.1-6_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from macs-2.2.7.1/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/29820 and its subdirectories I: Current time: Fri Jun 9 14:13:48 -12 2023 I: pbuilder-time-stamp: 1686363228 Sat Jun 10 02:13:51 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink9-arm64.debian.net. Sat Jun 10 02:13:51 UTC 2023 I: Preparing to do remote build '2' on codethink9-arm64.debian.net. Sat Jun 10 02:25:35 UTC 2023 I: Deleting $TMPDIR on codethink9-arm64.debian.net. Sat Jun 10 02:25:36 UTC 2023 I: macs_2.2.7.1-6_arm64.changes: Format: 1.8 Date: Thu, 24 Nov 2022 12:18:59 +0100 Source: macs Binary: macs macs-dbgsym Architecture: arm64 Version: 2.2.7.1-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: macs - Model-based Analysis of ChIP-Seq on short reads sequencers Changes: macs (2.2.7.1-6) unstable; urgency=medium . * Fix watch file * Standards-Version: 4.6.1 Checksums-Sha1: 0ad017d5b567abf0df7c4810fcff1a4194af68b6 7428176 macs-dbgsym_2.2.7.1-6_arm64.deb b0a1b5a764e38644f95d58d2cc8ea41ccf6c5ede 6682 macs_2.2.7.1-6_arm64.buildinfo 8a039e69528974198811cc4983c4d4fef6485a0a 2331124 macs_2.2.7.1-6_arm64.deb Checksums-Sha256: 1d3175ce7dfe8d06ada68075cca98c8694959c6ac1bc6a45300b4e183a5c40fd 7428176 macs-dbgsym_2.2.7.1-6_arm64.deb 159b88a2028343b7c14d5339cebcf4e9f2113d7b862a447e6e4085e814ca2899 6682 macs_2.2.7.1-6_arm64.buildinfo 4b0b9b2819125bd50745df5e863c72b36fc3bae0ebd4d354a5638822dd2388b1 2331124 macs_2.2.7.1-6_arm64.deb Files: 0e534ee0ae63812689f7945e6f531c57 7428176 debug optional macs-dbgsym_2.2.7.1-6_arm64.deb cfff45bcae8589646afa8e14c1e17d99 6682 science optional macs_2.2.7.1-6_arm64.buildinfo f6b941140ce8560918aae46b120471c7 2331124 science optional macs_2.2.7.1-6_arm64.deb Sat Jun 10 02:25:37 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.drMNrwdO/macs_2.2.7.1-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.drMNrwdO/macs_2.2.7.1-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.drMNrwdO/macs_2.2.7.1-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.drMNrwdO/b1/macs_2.2.7.1-6_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.drMNrwdO/b2/macs_2.2.7.1-6_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.461s) 0.461s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.117s) 0.117s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Sat Jun 10 02:25:38 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Sat Jun 10 02:25:38 UTC 2023 I: macs from bookworm built successfully and reproducibly on arm64. Sat Jun 10 02:25:39 UTC 2023 I: Submitting .buildinfo files to external archives: Sat Jun 10 02:25:39 UTC 2023 I: Submitting 8.0K b1/macs_2.2.7.1-6_arm64.buildinfo.asc Sat Jun 10 02:25:41 UTC 2023 I: Submitting 8.0K b2/macs_2.2.7.1-6_arm64.buildinfo.asc Sat Jun 10 02:25:42 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Jun 10 02:25:42 UTC 2023 I: Done submitting .buildinfo files. Sat Jun 10 02:25:42 UTC 2023 I: Removing signed macs_2.2.7.1-6_arm64.buildinfo.asc files: removed './b1/macs_2.2.7.1-6_arm64.buildinfo.asc' removed './b2/macs_2.2.7.1-6_arm64.buildinfo.asc'