Wed Apr 26 14:57:28 UTC 2023 I: starting to build libgclib/bookworm/arm64 on jenkins on '2023-04-26 14:57' Wed Apr 26 14:57:28 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_21/22849/console.log Wed Apr 26 14:57:28 UTC 2023 I: Downloading source for bookworm/libgclib=0.12.7+ds-5 --2023-04-26 14:57:29-- http://cdn-fastly.deb.debian.org/debian/pool/main/libg/libgclib/libgclib_0.12.7%2bds-5.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2331 (2.3K) [text/prs.lines.tag] Saving to: ‘libgclib_0.12.7+ds-5.dsc’ 0K .. 100% 23.5M=0s 2023-04-26 14:57:29 (23.5 MB/s) - ‘libgclib_0.12.7+ds-5.dsc’ saved [2331/2331] Wed Apr 26 14:57:29 UTC 2023 I: libgclib_0.12.7+ds-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libgclib Binary: libgclib-dev, libgclib3 Architecture: any Version: 0.12.7+ds-5 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille , Michael R. Crusoe , Étienne Mollier Homepage: https://github.com/gpertea/gclib Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/libgclib Vcs-Git: https://salsa.debian.org/med-team/libgclib.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 13), d-shlibs Package-List: libgclib-dev deb libdevel optional arch=any libgclib3 deb libs optional arch=any Checksums-Sha1: d54728a73bca7734b58bc52bae84578694918fbb 256645 libgclib_0.12.7+ds.orig.tar.gz 89900ccc1fe336c282107f4f247e62ab1b695cd0 14920 libgclib_0.12.7+ds-5.debian.tar.xz Checksums-Sha256: d9e5d89b1f9c696dac329a2788c535e49fabde1fec3524b6882c00309d1b375a 256645 libgclib_0.12.7+ds.orig.tar.gz 371133e06326d2aa8222134dd5edffe7a9cfc618d9f9def995842102aa122ade 14920 libgclib_0.12.7+ds-5.debian.tar.xz Files: a65ac3ce19638a92ba492569997e46b0 256645 libgclib_0.12.7+ds.orig.tar.gz 50d20daa4530ec4e138734aa1dbe1ae7 14920 libgclib_0.12.7+ds-5.debian.tar.xz Dgit: 38904758baca7a36b72e7b0d2f259b4a04c3b53b debian archive/debian/0.12.7+ds-5 https://git.dgit.debian.org/libgclib -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmNqvNAUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdo0kxAAkv2StsYn5DF3OKgDd2LZ8THEux66 QC3QuDmmyh9KdfDUGq7bNnCUbpRf9pByig4TuN8KAzTYsCkpyl+1TYGXD/b/qQtD fnzNSaTmbjw3nY4fCnd/dm3vsE1qo8T++2cFiK6B1cmr1vuVDDG7y6loKdo8TJgX +CemB1c670MmwphHk7epmuAQ5px+Q1p9JA+FwAUPs7SUEjh0dyEM7axdPj1GRjO2 EzZuGgHDRhPQBlz6zmXeQuYlMzYIvixM6ghXs0iriLO93F5lP2mL+7SVZasSCf4w fI/k8pGZbSGIfWsClD/2DbgH/QNkY0KcPKiQey+ndfNHdENlC3MA2hLKJ/w3jTLq B8AdQzL57ScSPMBW3LH0bdaZS0VLi8OwZdk2d12XD7BwpEgQE5BKLyLYY0DjwRBV YbB743nzDlu3yghSpIecKNgYSpSU5DiIQ20TXbOs6450Nywh5vJxZd95/p0CAOI5 jY9lo1w0mWPRdc01uKv5KfLBIPyU8sb1MPoupcnMb0pIt/RLAuDm1SrhdBPdy/GG JmZGj316K9iS7FSyTYqyuJjMTVpIvLvM5sccvf5djfGe3wnzyxx4PamvLLk/wTod +z9WhZhLQsoBRNAs4enXzPQWCj5vXCl1DOxUde6y3J6OZsg0kyjLFQUs9EAk3UCe mbhadEv2QS+1k0k= =0Nli -----END PGP SIGNATURE----- Wed Apr 26 14:57:29 UTC 2023 I: Checking whether the package is not for us Wed Apr 26 14:57:29 UTC 2023 I: Starting 1st build on remote node codethink14-arm64.debian.net. Wed Apr 26 14:57:29 UTC 2023 I: Preparing to do remote build '1' on codethink14-arm64.debian.net. Wed Apr 26 14:59:46 UTC 2023 I: Deleting $TMPDIR on codethink14-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Apr 26 02:57:31 -12 2023 I: pbuilder-time-stamp: 1682521051 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libgclib_0.12.7+ds-5.dsc] I: copying [./libgclib_0.12.7+ds.orig.tar.gz] I: copying [./libgclib_0.12.7+ds-5.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Nov 8 08:32:16 2022 -12 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libgclib_0.12.7+ds-5.dsc: no acceptable signature found dpkg-source: info: extracting libgclib in libgclib-0.12.7+ds dpkg-source: info: unpacking libgclib_0.12.7+ds.orig.tar.gz dpkg-source: info: unpacking libgclib_0.12.7+ds-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying autoconf.patch dpkg-source: info: applying CVE-2021-42006.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3731/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3731' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Kgzez65e/pbuilderrc_lXnF --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Kgzez65e/b1 --logfile b1/build.log libgclib_0.12.7+ds-5.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink14-arm64 4.15.0-209-generic #220-Ubuntu SMP Tue Mar 21 19:52:44 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 24 22:27 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3731/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 18.4 MB of archives. After unpacking 74.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 d-shlibs all 0.104 [18.6 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 22 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 23 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 24 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Fetched 18.4 MB in 1s (15.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../02-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../15-d-shlibs_0.104_all.deb ... Unpacking d-shlibs (0.104) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../23-libelf1_0.188-2.1_arm64.deb ... Unpacking libelf1:arm64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../25-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../26-libxml2_2.9.14+dfsg-1.2_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-12_arm64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libicu72:arm64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-12) ... Setting up d-shlibs (0.104) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.11.4) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/libgclib-0.12.7+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libgclib_0.12.7+ds-5_source.changes dpkg-buildpackage: info: source package libgclib dpkg-buildpackage: info: source version 0.12.7+ds-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/libgclib-0.12.7+ds' if [ -r Makefile -a -r Makefile.am ]; then dh_auto_clean; fi rm -f Makefile Makefile.in aclocal.m4 config.h.in configure debian/autoreconf.after debian/autoreconf.before find . -name "*.o" -delete make[1]: Leaving directory '/build/libgclib-0.12.7+ds' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf aclocal: warning: couldn't open directory 'config': No such file or directory libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'. libtoolize: copying file 'config/libtool.m4' libtoolize: copying file 'config/ltoptions.m4' libtoolize: copying file 'config/ltsugar.m4' libtoolize: copying file 'config/ltversion.m4' libtoolize: copying file 'config/lt~obsolete.m4' libtoolize: Consider adding '-I config' to ACLOCAL_AMFLAGS in Makefile.am. configure.ac:30: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:30: You should run autoupdate. config/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:30: the top level configure.ac:51: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:51: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:51: the top level configure.ac:30: installing 'config/compile' configure.ac:30: installing 'config/config.guess' configure.ac:30: installing 'config/config.sub' configure.ac:18: installing 'config/install-sh' configure.ac:18: installing 'config/missing' Makefile.am: installing 'config/depcomp' dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '1111' is supported by ustar format... yes checking whether GID '1111' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether ln -s works... yes checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate ./configure: line 16912: AX_CXXFLAGS: command not found checking for egrep... (cached) /usr/bin/grep -E checking for stdlib.h... (cached) yes checking whether make sets $(MAKE)... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libgclib.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build make -j8 make[1]: Entering directory '/build/libgclib-0.12.7+ds' make all-am make[2]: Entering directory '/build/libgclib-0.12.7+ds' g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c -o mdtest.o mdtest.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c -o libgclib_la-codons.lo `test -f 'codons.cpp' || echo './'`codons.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c -o libgclib_la-GAlnExtend.lo `test -f 'GAlnExtend.cpp' || echo './'`GAlnExtend.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c -o libgclib_la-GapAssem.lo `test -f 'GapAssem.cpp' || echo './'`GapAssem.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c -o libgclib_la-GArgs.lo `test -f 'GArgs.cpp' || echo './'`GArgs.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c -o libgclib_la-GBase.lo `test -f 'GBase.cpp' || echo './'`GBase.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c -o libgclib_la-gcdb.lo `test -f 'gcdb.cpp' || echo './'`gcdb.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c -o libgclib_la-GCdbYank.lo `test -f 'GCdbYank.cpp' || echo './'`GCdbYank.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c GArgs.cpp -fPIC -DPIC -o .libs/libgclib_la-GArgs.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c GAlnExtend.cpp -fPIC -DPIC -o .libs/libgclib_la-GAlnExtend.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c codons.cpp -fPIC -DPIC -o .libs/libgclib_la-codons.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c gcdb.cpp -fPIC -DPIC -o .libs/libgclib_la-gcdb.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c GBase.cpp -fPIC -DPIC -o .libs/libgclib_la-GBase.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c GCdbYank.cpp -fPIC -DPIC -o .libs/libgclib_la-GCdbYank.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c GapAssem.cpp -fPIC -DPIC -o .libs/libgclib_la-GapAssem.o gcdb.cpp: In function ‘unsigned int gcdb_strlen(const char*)’: gcdb.cpp:102:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 102 | register char *t; | ^ gcdb.cpp: In constructor ‘GCdbRead::GCdbRead(int)’: gcdb.cpp:809:13: warning: comparing the result of pointer addition ‘(x + 1)’ and NULL [-Waddress] 809 | if (x + 1) { | ~~^~~ gcdb.cpp: In constructor ‘GCdbRead::GCdbRead(char*)’: gcdb.cpp:843:13: warning: comparing the result of pointer addition ‘(x + 1)’ and NULL [-Waddress] 843 | if (x + 1) { | ~~^~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c codons.cpp -o libgclib_la-codons.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c -o libgclib_la-gdna.lo `test -f 'gdna.cpp' || echo './'`gdna.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c gdna.cpp -fPIC -DPIC -o .libs/libgclib_la-gdna.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c GCdbYank.cpp -o libgclib_la-GCdbYank.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c GArgs.cpp -o libgclib_la-GArgs.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c -o libgclib_la-GFaSeqGet.lo `test -f 'GFaSeqGet.cpp' || echo './'`GFaSeqGet.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c gcdb.cpp -o libgclib_la-gcdb.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c GFaSeqGet.cpp -fPIC -DPIC -o .libs/libgclib_la-GFaSeqGet.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c gdna.cpp -o libgclib_la-gdna.o >/dev/null 2>&1 GapAssem.cpp: In member function ‘GASeq::refineClipping(GDynArray&, int, bool)’: GapAssem.cpp:239:23: warning: ‘gseq’ may be used uninitialized [-Wmaybe-uninitialized] 239 | gseq[allocsize] = 0; | ^ GapAssem.cpp:212:15: note: ‘gseq’ was declared here 212 | char* gseq; | ^~~~ GapAssem.cpp:366:46: warning: ‘gxpos’ may be used uninitialized [-Wmaybe-uninitialized] 366 | clipL = gxpos[bestpos]; | ^ GapAssem.cpp:236:14: note: ‘gxpos’ was declared here 236 | int* gxpos; //mapping of positions from gseq to seq | ^~~~~ GAlnExtend.cpp: In function ‘color_fg(int, _IO_FILE*)’: GAlnExtend.cpp:13:35: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 4 [-Wformat-overflow=] 13 | sprintf((char *)(&COLOR_buf[2]),"%dm",c+30); | ^~ In function ‘color_fg(int, _IO_FILE*)’, inlined from ‘color_fg(int, _IO_FILE*)’ at GAlnExtend.cpp:11:6: GAlnExtend.cpp:13:34: note: directive argument in the range [-2147483618, 2147483647] 13 | sprintf((char *)(&COLOR_buf[2]),"%dm",c+30); | ^~~~~ In file included from /usr/include/stdio.h:906, from GBase.h:63, from GAlnExtend.h:6, from GAlnExtend.cpp:1: In function ‘sprintf’, inlined from ‘color_fg(int, _IO_FILE*)’ at GAlnExtend.cpp:13:9, inlined from ‘color_fg(int, _IO_FILE*)’ at GAlnExtend.cpp:11:6: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 3 and 13 bytes into a destination of size 4 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ GAlnExtend.cpp: In function ‘color_bg(int, _IO_FILE*)’: GAlnExtend.cpp:19:35: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 4 [-Wformat-overflow=] 19 | sprintf((char *)(&COLOR_buf[2]),"%dm",c+40); | ^~ In function ‘color_bg(int, _IO_FILE*)’, inlined from ‘color_bg(int, _IO_FILE*)’ at GAlnExtend.cpp:17:6: GAlnExtend.cpp:19:34: note: directive argument in the range [-2147483608, 2147483647] 19 | sprintf((char *)(&COLOR_buf[2]),"%dm",c+40); | ^~~~~ In function ‘sprintf’, inlined from ‘color_bg(int, _IO_FILE*)’ at GAlnExtend.cpp:19:9, inlined from ‘color_bg(int, _IO_FILE*)’ at GAlnExtend.cpp:17:6: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 3 and 13 bytes into a destination of size 4 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c GBase.cpp -o libgclib_la-GBase.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c -o libgclib_la-GFastaIndex.lo `test -f 'GFastaIndex.cpp' || echo './'`GFastaIndex.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c -o libgclib_la-gff.lo `test -f 'gff.cpp' || echo './'`gff.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c GFastaIndex.cpp -fPIC -DPIC -o .libs/libgclib_la-GFastaIndex.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c gff.cpp -fPIC -DPIC -o .libs/libgclib_la-gff.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c -o libgclib_la-gsocket.lo `test -f 'gsocket.cpp' || echo './'`gsocket.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c gsocket.cpp -fPIC -DPIC -o .libs/libgclib_la-gsocket.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c -o libgclib_la-gstopwatch.lo `test -f 'gstopwatch.cpp' || echo './'`gstopwatch.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c gstopwatch.cpp -fPIC -DPIC -o .libs/libgclib_la-gstopwatch.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c gsocket.cpp -o libgclib_la-gsocket.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c GapAssem.cpp -o libgclib_la-GapAssem.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c GAlnExtend.cpp -o libgclib_la-GAlnExtend.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c gstopwatch.cpp -o libgclib_la-gstopwatch.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c GFaSeqGet.cpp -o libgclib_la-GFaSeqGet.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c -o libgclib_la-GStr.lo `test -f 'GStr.cpp' || echo './'`GStr.cpp In file included from gff.cpp:1: gff.h:242:16: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 242 | struct { | ^ gff.h:245:16: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 245 | struct { | ^ gff.h:343:12: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 343 | struct { | ^ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c -o libgclib_la-GThreads.lo `test -f 'GThreads.cpp' || echo './'`GThreads.cpp gff.h:706:14: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 706 | struct { | ^ gff.h:1165:12: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 1165 | struct { | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c GStr.cpp -fPIC -DPIC -o .libs/libgclib_la-GStr.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c GThreads.cpp -fPIC -DPIC -o .libs/libgclib_la-GThreads.o gff.cpp: In constructor ‘GffLine::GffLine(GffReader*, const char*)’: gff.cpp:426:19: warning: unknown escape sequence: '\%' 426 | GMessage("Warning: unexpected tab character in last column, line truncated:\n\%s\n",l); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c GThreads.cpp -o libgclib_la-GThreads.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c GFastaIndex.cpp -o libgclib_la-GFastaIndex.o >/dev/null 2>&1 In file included from GStr.h:5, from GStr.cpp:2: GBase.h: In function ‘GStr::new_data(char const*, unsigned int)’: GBase.h:176:28: warning: ‘data’ may be used uninitialized [-Wmaybe-uninitialized] 176 | #define GMALLOC(ptr,size) if (!GMalloc((pointer*)(&ptr),size)) \ | ^~ GStr.cpp:38:15: note: ‘data’ was declared here 38 | Data* data; | ^~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c GStr.cpp -o libgclib_la-GStr.o >/dev/null 2>&1 gff.cpp: In member function ‘BEDLine::BEDLine(GffReader*, char const*)’: gff.cpp:276:32: warning: ‘bstart’ may be used uninitialized [-Wmaybe-uninitialized] 276 | if (!strToInt(bstart[i], exonstart) || exonstart<0) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ gff.cpp:242:18: note: ‘bstart’ was declared here 242 | char** bstart; | ^~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -c gff.cpp -o libgclib_la-gff.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -version-info 3:0 -lpthread -Wl,-z,relro -Wl,-z,now -Wl,-flto -o libgclib.la -rpath /usr/lib/aarch64-linux-gnu libgclib_la-codons.lo libgclib_la-GAlnExtend.lo libgclib_la-GapAssem.lo libgclib_la-GArgs.lo libgclib_la-GBase.lo libgclib_la-gcdb.lo libgclib_la-GCdbYank.lo libgclib_la-gdna.lo libgclib_la-GFaSeqGet.lo libgclib_la-GFastaIndex.lo libgclib_la-gff.lo libgclib_la-gsocket.lo libgclib_la-gstopwatch.lo libgclib_la-GStr.lo libgclib_la-GThreads.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/12/crtbeginS.o .libs/libgclib_la-codons.o .libs/libgclib_la-GAlnExtend.o .libs/libgclib_la-GapAssem.o .libs/libgclib_la-GArgs.o .libs/libgclib_la-GBase.o .libs/libgclib_la-gcdb.o .libs/libgclib_la-GCdbYank.o .libs/libgclib_la-gdna.o .libs/libgclib_la-GFaSeqGet.o .libs/libgclib_la-GFastaIndex.o .libs/libgclib_la-gff.o .libs/libgclib_la-gsocket.o .libs/libgclib_la-gstopwatch.o .libs/libgclib_la-GStr.o .libs/libgclib_la-GThreads.o -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/12/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -flto -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-flto -Wl,-soname -Wl,libgclib.so.3 -o .libs/libgclib.so.3.0.0 lto-wrapper: warning: using serial compilation of 5 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information In member function '__ct ', inlined from 'buildMSA' at GapAssem.cpp:1123:47: GapAssem.h:350:32: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 350 | columns=new GAlnColumn[len]; | ^ /usr/include/c++/12/new: In member function 'buildMSA': /usr/include/c++/12/new:128:26: note: in a call to allocation function 'operator new []' declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In member function 'setCapacity', inlined from 'Grow' at GVec.hh:323:13, inlined from 'Add.constprop.isra' at GVec.hh:370:29: GVec.hh:107:24: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 107 | fArray=new OBJ[NewCapacity]; | ^ /usr/include/c++/12/new: In member function 'Add.constprop.isra': /usr/include/c++/12/new:128:26: note: in a call to allocation function 'operator new []' declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ libtool: link: (cd ".libs" && rm -f "libgclib.so.3" && ln -s "libgclib.so.3.0.0" "libgclib.so.3") libtool: link: (cd ".libs" && rm -f "libgclib.so" && ln -s "libgclib.so.3.0.0" "libgclib.so") libtool: link: ar cr .libs/libgclib.a libgclib_la-codons.o libgclib_la-GAlnExtend.o libgclib_la-GapAssem.o libgclib_la-GArgs.o libgclib_la-GBase.o libgclib_la-gcdb.o libgclib_la-GCdbYank.o libgclib_la-gdna.o libgclib_la-GFaSeqGet.o libgclib_la-GFastaIndex.o libgclib_la-gff.o libgclib_la-gsocket.o libgclib_la-gstopwatch.o libgclib_la-GStr.o libgclib_la-GThreads.o libtool: link: ranlib .libs/libgclib.a libtool: link: ( cd ".libs" && rm -f "libgclib.la" && ln -s "../libgclib.la" "libgclib.la" ) /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -Wl,-z,relro -Wl,-z,now -Wl,-flto -o mdtest mdtest.o libgclib.la libtool: link: g++ -g -O2 -ffile-prefix-map=/build/libgclib-0.12.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -ffat-lto-objects -fPIC -D_FILE_OFFSET_BITS=64 -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-flto -o .libs/mdtest mdtest.o ./.libs/libgclib.so make[2]: Leaving directory '/build/libgclib-0.12.7+ds' make[1]: Leaving directory '/build/libgclib-0.12.7+ds' debian/rules override_dh_auto_test make[1]: Entering directory '/build/libgclib-0.12.7+ds' ./mdtest 7TEST^BCT 7 matching bases base mismatch [T] base mismatch [E] base mismatch [S] base mismatch [T] 3 base(s) deletion [BCT] make[1]: Leaving directory '/build/libgclib-0.12.7+ds' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/libgclib-0.12.7\+ds/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/libgclib-0.12.7+ds' make[2]: Entering directory '/build/libgclib-0.12.7+ds' /usr/bin/mkdir -p '/build/libgclib-0.12.7+ds/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c libgclib.la '/build/libgclib-0.12.7+ds/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libgclib.so.3.0.0 /build/libgclib-0.12.7+ds/debian/tmp/usr/lib/aarch64-linux-gnu/libgclib.so.3.0.0 libtool: install: (cd /build/libgclib-0.12.7+ds/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libgclib.so.3.0.0 libgclib.so.3 || { rm -f libgclib.so.3 && ln -s libgclib.so.3.0.0 libgclib.so.3; }; }) libtool: install: (cd /build/libgclib-0.12.7+ds/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libgclib.so.3.0.0 libgclib.so || { rm -f libgclib.so && ln -s libgclib.so.3.0.0 libgclib.so; }; }) libtool: install: /usr/bin/install -c .libs/libgclib.lai /build/libgclib-0.12.7+ds/debian/tmp/usr/lib/aarch64-linux-gnu/libgclib.la libtool: install: /usr/bin/install -c .libs/libgclib.a /build/libgclib-0.12.7+ds/debian/tmp/usr/lib/aarch64-linux-gnu/libgclib.a libtool: install: chmod 644 /build/libgclib-0.12.7+ds/debian/tmp/usr/lib/aarch64-linux-gnu/libgclib.a libtool: install: ranlib /build/libgclib-0.12.7+ds/debian/tmp/usr/lib/aarch64-linux-gnu/libgclib.a libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/libgclib-0.12.7+ds/debian/tmp/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c mdtest '/build/libgclib-0.12.7+ds/debian/tmp/usr/bin' libtool: warning: 'libgclib.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/mdtest /build/libgclib-0.12.7+ds/debian/tmp/usr/bin/mdtest /usr/bin/mkdir -p '/build/libgclib-0.12.7+ds/debian/tmp/usr/include' /usr/bin/install -c -m 644 GAlnExtend.h GArgs.h GBam.h GBase.h GBitVec.h GCdbYank.h GFaSeqGet.h GFastaFile.h GFastaIndex.h GResUsage.h GStr.h GThreads.h GapAssem.h codons.h config.h gcdb.h gdimg.h gdna.h gff.h gsocket.h gstopwatch.h proc_mem.h wyhash.h xxhash.h GHash.hh GHashMap.hh GIntHash.hh GIntervalTree.hh GList.hh GVec.hh khashl.hh '/build/libgclib-0.12.7+ds/debian/tmp/usr/include' /usr/bin/mkdir -p '/build/libgclib-0.12.7+ds/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libgclib.pc '/build/libgclib-0.12.7+ds/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' make[2]: Leaving directory '/build/libgclib-0.12.7+ds' make[1]: Leaving directory '/build/libgclib-0.12.7+ds' debian/rules override_dh_install make[1]: Entering directory '/build/libgclib-0.12.7+ds' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include usr \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/aarch64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libgclib-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libgclib3/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libgclib.a debian/libgclib-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libgclib.so debian/libgclib-dev/usr/lib/aarch64-linux-gnu mv /build/libgclib-0.12.7+ds/debian/tmp/usr/lib/aarch64-linux-gnu/libgclib.so.3 debian/libgclib3/usr/lib/aarch64-linux-gnu mv /build/libgclib-0.12.7+ds/debian/tmp/usr/lib/aarch64-linux-gnu/libgclib.so.3.0.0 debian/libgclib3/usr/lib/aarch64-linux-gnu PKGDEV=libgclib-dev PKGSHL=libgclib3 install -d -m 755 debian/libgclib-dev/usr mv debian/tmp/usr/include debian/libgclib-dev/usr install -d -m 755 debian/libgclib-dev/usr/lib/aarch64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libgclib-dev/usr/lib/aarch64-linux-gnu/pkgconfig mkdir debian/libgclib-dev/usr/include/gclib mv debian/libgclib-dev/usr/include/*.h* debian/libgclib-dev/usr/include/gclib sed -i '/PACKAGE_NAME/d' debian/libgclib-dev/usr/include/gclib/config.h # delete header files of not compiled C++ source files find debian/libgclib-dev -name gdimg.h -delete find debian/libgclib-dev -name GBam.h -delete make[1]: Leaving directory '/build/libgclib-0.12.7+ds' dh_installdocs dh_installchangelogs debian/rules override_dh_installexamples make[1]: Entering directory '/build/libgclib-0.12.7+ds' dh_installexamples chmod a-x debian/libgclib-dev/usr/share/doc/libgclib-dev/examples/* make[1]: Leaving directory '/build/libgclib-0.12.7+ds' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libgclib-dev' in '../libgclib-dev_0.12.7+ds-5_arm64.deb'. dpkg-deb: building package 'libgclib3' in '../libgclib3_0.12.7+ds-5_arm64.deb'. dpkg-deb: building package 'libgclib3-dbgsym' in '../libgclib3-dbgsym_0.12.7+ds-5_arm64.deb'. dpkg-genbuildinfo --build=binary -O../libgclib_0.12.7+ds-5_arm64.buildinfo dpkg-genchanges --build=binary -O../libgclib_0.12.7+ds-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3731 and its subdirectories I: Current time: Wed Apr 26 02:59:44 -12 2023 I: pbuilder-time-stamp: 1682521184 Wed Apr 26 14:59:47 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink9-arm64.debian.net. Wed Apr 26 14:59:47 UTC 2023 I: Preparing to do remote build '2' on codethink9-arm64.debian.net. Wed Apr 26 15:03:39 UTC 2023 I: Deleting $TMPDIR on codethink9-arm64.debian.net. Wed Apr 26 15:03:40 UTC 2023 I: libgclib_0.12.7+ds-5_arm64.changes: Format: 1.8 Date: Tue, 08 Nov 2022 21:07:26 +0100 Source: libgclib Binary: libgclib-dev libgclib3 libgclib3-dbgsym Architecture: arm64 Version: 0.12.7+ds-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libgclib-dev - header files for Genome Code Lib (GCLib) libgclib3 - C++ library to handle biological short sequence data Changes: libgclib (0.12.7+ds-5) unstable; urgency=medium . * d/control: add myself to uploaders. * d/rules: add build option -ffat-lto-objects to restore usable code, per lintian error no-code-sections. * d/watch: fix github change; switch to git mode. * d/control: declare compliance to standards version 4.6.1. Checksums-Sha1: 8dc9d2063d1d81071edbea8e02d00f25bb8442df 268012 libgclib-dev_0.12.7+ds-5_arm64.deb 69bd07980585d135db10728fd43509b6bb66b645 597448 libgclib3-dbgsym_0.12.7+ds-5_arm64.deb 6a3ece9a1af64169365427d89a75a0b735aaa54f 131100 libgclib3_0.12.7+ds-5_arm64.deb b29e3353ff058981182ea615d198d141e8d3cfa5 5906 libgclib_0.12.7+ds-5_arm64.buildinfo Checksums-Sha256: 02624acdf7f6e86dccb50db6695fcf5f359cff836380703b3ed41aa39a662082 268012 libgclib-dev_0.12.7+ds-5_arm64.deb 1b6abda2120b2a93d70f4bdcc3a93fbdb844682055f7c6008b22578811a47dff 597448 libgclib3-dbgsym_0.12.7+ds-5_arm64.deb 4fe91fecd781e25a4195ec9220e44484cc8b2dcf8cc3a86907c8c1ce8569721e 131100 libgclib3_0.12.7+ds-5_arm64.deb 014c0fffdb99c3ff39d441d139517a4ef274b7bca527df90b2099352361a0c99 5906 libgclib_0.12.7+ds-5_arm64.buildinfo Files: 77f4c01e9f12cc05b99257249e83ba56 268012 libdevel optional libgclib-dev_0.12.7+ds-5_arm64.deb 886e46d629b37c9a9df203c6b77facb4 597448 debug optional libgclib3-dbgsym_0.12.7+ds-5_arm64.deb ab7ad4c177dec73a126009172175a35b 131100 libs optional libgclib3_0.12.7+ds-5_arm64.deb 37c8e5799123bdb69d9fbb3f80da7b49 5906 science optional libgclib_0.12.7+ds-5_arm64.buildinfo Wed Apr 26 15:03:41 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Kgzez65e/libgclib_0.12.7+ds-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Kgzez65e/libgclib_0.12.7+ds-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Kgzez65e/libgclib_0.12.7+ds-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Kgzez65e/b1/libgclib_0.12.7+ds-5_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Kgzez65e/b2/libgclib_0.12.7+ds-5_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.560s) 0.560s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.028s) 0.028s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Wed Apr 26 15:03:42 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Wed Apr 26 15:03:42 UTC 2023 I: libgclib from bookworm built successfully and reproducibly on arm64. Wed Apr 26 15:03:44 UTC 2023 I: Submitting .buildinfo files to external archives: Wed Apr 26 15:03:44 UTC 2023 I: Submitting 8.0K b1/libgclib_0.12.7+ds-5_arm64.buildinfo.asc Wed Apr 26 15:03:46 UTC 2023 I: Submitting 8.0K b2/libgclib_0.12.7+ds-5_arm64.buildinfo.asc Wed Apr 26 15:03:47 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Apr 26 15:03:47 UTC 2023 I: Done submitting .buildinfo files. Wed Apr 26 15:03:47 UTC 2023 I: Removing signed libgclib_0.12.7+ds-5_arm64.buildinfo.asc files: removed './b1/libgclib_0.12.7+ds-5_arm64.buildinfo.asc' removed './b2/libgclib_0.12.7+ds-5_arm64.buildinfo.asc'