Sat Apr 15 05:43:37 UTC 2023 I: starting to build glam2/bookworm/arm64 on jenkins on '2023-04-15 05:43' Sat Apr 15 05:43:37 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_22/5223/console.log Sat Apr 15 05:43:37 UTC 2023 I: Downloading source for bookworm/glam2=1064-9 --2023-04-15 05:43:37-- http://cdn-fastly.deb.debian.org/debian/pool/main/g/glam2/glam2_1064-9.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2006 (2.0K) [text/prs.lines.tag] Saving to: ‘glam2_1064-9.dsc’ 0K . 100% 145M=0s 2023-04-15 05:43:37 (145 MB/s) - ‘glam2_1064-9.dsc’ saved [2006/2006] Sat Apr 15 05:43:37 UTC 2023 I: glam2_1064-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: glam2 Binary: glam2 Architecture: any Version: 1064-9 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Charles Plessy , Andreas Tille Homepage: http://acb.qfab.org/acb/glam2/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/glam2 Vcs-Git: https://salsa.debian.org/med-team/glam2.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libfftw3-dev Package-List: glam2 deb science optional arch=any Checksums-Sha1: 655dec5140c3293953c7160b41cdbd073c00e2ca 237926 glam2_1064.orig.tar.gz 0fce9d72626f96274179075b9e031eb65b9fac63 12552 glam2_1064-9.debian.tar.xz Checksums-Sha256: 7cdcb290792e79d984d1244940cd2f4d9f92182e4611e6c441d3c273d1f30c40 237926 glam2_1064.orig.tar.gz 15875a4056fba4c77f9fa270a61a82597b3ce834ede8204c6713cd27f7fe8901 12552 glam2_1064-9.debian.tar.xz Files: 84ec46d59e299c4cd70cd0b900696c30 237926 glam2_1064.orig.tar.gz 6c634aa15b4ca66cccbf9e9732e301df 12552 glam2_1064-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/OoZARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGi5A/9FCy+RUjQDzUSyPTfZGNGGV1WqBH37SyV ijySW7fqy0W1GsnsnZgkrUIuYnDwLAk+cqQGn/XEeLU3pB/iiXzKhaVLD0Jx4i6O Cq5auWDRomPA89+o5rxwPnAbS9En6AylMPX2Gk8+P1JFgb4CXrV5JxUj3KkJg52c Cxvd2Rmo95S3bYnE2N5qzoDmwS4fkaSZQYRRQmo057Y3t1c7fWb/ML2O8rsuZxrC a6PrAxPYxdAxzVf8Zj1MY8cEV0EL9v9pGGUjhJhVPUdwFA5bnkw9BumbU0XUW37S QBJn7rmMxm2J6Zkjc2rgDDy7EZUGbPSetnN80r6ip5bNfZV6CbQVvbZR9NvjkYG2 fuijOanAXCHou2NAYSZb7e69fR4G5k89nzkWMy9nUknegxZdnOQCt2HHaOeKCyt5 vCjldkvDL7yKwxMNKzf3/nMt6xEObXSCGtxw1dqFPnM431QgMRAd7RkIOQ2Aij+M eruekxn9kRY04xSpBtMT9Hd+dKMfK3RU7y3AUiUMWxey3KW7GZ/kpozS5+QiDapX gcJFDBrGT6MtA0o3dUMeNU9/0QQ9MMMRSfMk8GnOqROaQa+LmM4uzGPjZO+llnex lO3oglgrT7pXfyDMNI6q4F6jdN3//U9y4bl4gPig+hQsGBvSVv5GSXVrYtYBprxu Z07O3yVrztc= =lPiM -----END PGP SIGNATURE----- Sat Apr 15 05:43:37 UTC 2023 I: Checking whether the package is not for us Sat Apr 15 05:43:37 UTC 2023 I: Starting 1st build on remote node codethink14-arm64.debian.net. Sat Apr 15 05:43:37 UTC 2023 I: Preparing to do remote build '1' on codethink14-arm64.debian.net. Sat Apr 15 05:45:12 UTC 2023 I: Deleting $TMPDIR on codethink14-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Apr 14 17:43:43 -12 2023 I: pbuilder-time-stamp: 1681537423 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [glam2_1064-9.dsc] I: copying [./glam2_1064.orig.tar.gz] I: copying [./glam2_1064-9.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Dec 7 09:41:36 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./glam2_1064-9.dsc: no acceptable signature found dpkg-source: info: extracting glam2 in glam2-1064 dpkg-source: info: unpacking glam2_1064.orig.tar.gz dpkg-source: info: unpacking glam2_1064-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying change-fixed-compilers.patch dpkg-source: info: applying fix_html_syntax.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/8708/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='8708' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.nkvvNzDV/pbuilderrc_fXht --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.nkvvNzDV/b1 --logfile b1/build.log glam2_1064-9.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink14-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 12 22:50 /bin -> usr/bin I: user script /srv/workspace/pbuilder/8708/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libfftw3-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libfftw3-dev; however: Package libfftw3-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 20.9 MB of archives. After unpacking 88.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.1+b3 [619 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 libfftw3-double3 arm64 3.3.10-1 [326 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 libfftw3-long3 arm64 3.3.10-1 [529 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 libfftw3-single3 arm64 3.3.10-1 [494 kB] Get: 34 http://deb.debian.org/debian bookworm/main arm64 libfftw3-bin arm64 3.3.10-1 [42.9 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 libfftw3-dev arm64 3.3.10-1 [1186 kB] Fetched 20.9 MB in 1s (41.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../02-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../22-libelf1_0.188-2.1_arm64.deb ... Unpacking libelf1:arm64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../24-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.1+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.1+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-12_arm64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package libfftw3-double3:arm64. Preparing to unpack .../30-libfftw3-double3_3.3.10-1_arm64.deb ... Unpacking libfftw3-double3:arm64 (3.3.10-1) ... Selecting previously unselected package libfftw3-long3:arm64. Preparing to unpack .../31-libfftw3-long3_3.3.10-1_arm64.deb ... Unpacking libfftw3-long3:arm64 (3.3.10-1) ... Selecting previously unselected package libfftw3-single3:arm64. Preparing to unpack .../32-libfftw3-single3_3.3.10-1_arm64.deb ... Unpacking libfftw3-single3:arm64 (3.3.10-1) ... Selecting previously unselected package libfftw3-bin. Preparing to unpack .../33-libfftw3-bin_3.3.10-1_arm64.deb ... Unpacking libfftw3-bin (3.3.10-1) ... Selecting previously unselected package libfftw3-dev:arm64. Preparing to unpack .../34-libfftw3-dev_3.3.10-1_arm64.deb ... Unpacking libfftw3-dev:arm64 (3.3.10-1) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libfftw3-single3:arm64 (3.3.10-1) ... Setting up libicu72:arm64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up libfftw3-long3:arm64 (3.3.10-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-12) ... Setting up libfftw3-double3:arm64 (3.3.10-1) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.1+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libfftw3-bin (3.3.10-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libfftw3-dev:arm64 (3.3.10-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.11.4) ... Processing triggers for libc-bin (2.36-8) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/glam2-1064/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../glam2_1064-9_source.changes dpkg-buildpackage: info: source package glam2 dpkg-buildpackage: info: source version 1064-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src dh_autoreconf_clean -O--sourcedirectory=src debian/rules override_dh_clean make[1]: Entering directory '/build/glam2-1064' dh_clean rm -f purge/*.o purge/purge src/*.o src/glam2 src/glam2mask scr/glam2format src/glam2scan src/glam2fft src/glam2format make[1]: Leaving directory '/build/glam2-1064' debian/rules binary dh binary --sourcedirectory=src dh_update_autotools_config -O--sourcedirectory=src dh_autoreconf -O--sourcedirectory=src dh_auto_configure -O--sourcedirectory=src debian/rules override_dh_auto_build make[1]: Entering directory '/build/glam2-1064' dh_auto_build cd src && make -j8 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/glam2-1064/src' cc -g -O2 -ffile-prefix-map=/build/glam2-1064=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -o glam2 alphabet.c args.c column_sample.c dirichlet.c dna_prior.c fasta.c glam2.c glam2_aln.c init.c output.c recode3_20comp.c site_sample.c util.c -lm -Wl,-z,relro -Wl,-z,now cc -g -O2 -ffile-prefix-map=/build/glam2-1064=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -o glam2scan alphabet.c scan_args.c dirichlet.c dna_prior.c fasta.c scan.c scan_init.c scan_output.c recode3_20comp.c util.c heap.c motif.c alignment.c -lm -Wl,-z,relro -Wl,-z,now cc -g -O2 -ffile-prefix-map=/build/glam2-1064=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -o glam2format glam2format.c alignment.c fasta.c util.c -lm -Wl,-z,relro -Wl,-z,now cc -g -O2 -ffile-prefix-map=/build/glam2-1064=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -o glam2mask glam2mask.c alignment.c fasta.c util.c -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/glam2-1064/src' dh_auto_build -B src -- glam2fft cd src && make -j8 "INSTALL=install --strip-program=true" glam2fft make[2]: Entering directory '/build/glam2-1064/src' cc -g -O2 -ffile-prefix-map=/build/glam2-1064=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -DFFT -o glam2fft alphabet.c args.c column_sample.c dirichlet.c dna_prior.c fasta.c glam2.c glam2_aln.c init.c output.c recode3_20comp.c site_sample.c util.c convolve.c -lm -lfftw3 -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/glam2-1064/src' dh_auto_build -B purge cd purge && make -j8 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/glam2-1064/purge' cc -g -O2 -ffile-prefix-map=/build/glam2-1064=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -o purge *.c -lm -Wl,-z,relro -Wl,-z,now block.c: In function 'IntersectBlockL': block.c:314:25: warning: operation on '*(B2->b + (sizetype)e)' may be undefined [-Wsequence-point] 314 | if((B2->b[e] = B1->b[e]) & B2->b[e]) {B2->list[k++]=e; } | ~~~~~~~~~~^~~~~~~~~~~ gblast.c: In function 'MakeGBlast': gblast.c:110:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 110 | for(c=0; c <= nAlpha(A); c++) free(best[c]); free(best); | ^~~ gblast.c:110:54: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 110 | for(c=0; c <= nAlpha(A); c++) free(best[c]); free(best); | ^~~~ gblast.c:14:21: warning: variable 'time1' set but not used [-Wunused-but-set-variable] 14 | long time1; | ^~~~~ gblast.c:11:19: warning: variable 'R' set but not used [-Wunused-but-set-variable] 11 | int **R; | ^ sequence.c: In function 'RandomizeSeq': sequence.c:235:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 235 | if(E->info!=NULL)free(E->info); E->info = NULL; return E; | ^~ sequence.c:235:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 235 | if(E->info!=NULL)free(E->info); E->info = NULL; return E; | ^ sequence.c: In function 'ShuffleSeq': sequence.c:290:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 290 | if(E->info!=NULL)free(E->info); E->info = NULL; | ^~ sequence.c:290:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 290 | if(E->info!=NULL)free(E->info); E->info = NULL; | ^ sequence.c: In function 'ShuffleSeq2': sequence.c:309:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 309 | if(E->info!=NULL)free(E->info); E->info = NULL; | ^~ sequence.c:309:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 309 | if(E->info!=NULL)free(E->info); E->info = NULL; | ^ sequence.c: In function 'CenterSeqHSP': sequence.c:429:27: warning: variable 'score' set but not used [-Wunused-but-set-variable] 429 | long v,n,n1,n2,score=0,e,start,end; | ^~~~~ make[2]: Leaving directory '/build/glam2-1064/purge' make[1]: Leaving directory '/build/glam2-1064' dh_auto_test -O--sourcedirectory=src create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=src dh_prep -O--sourcedirectory=src dh_auto_install --destdir=debian/glam2/ -O--sourcedirectory=src debian/rules override_dh_install make[1]: Entering directory '/build/glam2-1064' dh_install # purge is renamed glam2-purge to avoid namespace problems. mv /build/glam2-1064/debian/glam2/usr/bin/purge /build/glam2-1064/debian/glam2/usr/bin/glam2-purge # FFT is enabled by default in Debian. mv /build/glam2-1064/debian/glam2/usr/bin/glam2fft /build/glam2-1064/debian/glam2/usr/bin/glam2 make[1]: Leaving directory '/build/glam2-1064' dh_installdocs -O--sourcedirectory=src dh_installchangelogs -O--sourcedirectory=src dh_installexamples -O--sourcedirectory=src dh_installman -O--sourcedirectory=src dh_installsystemduser -O--sourcedirectory=src dh_perl -O--sourcedirectory=src dh_link -O--sourcedirectory=src dh_strip_nondeterminism -O--sourcedirectory=src debian/rules override_dh_compress make[1]: Entering directory '/build/glam2-1064' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/glam2-1064' dh_fixperms -O--sourcedirectory=src dh_missing -O--sourcedirectory=src dh_dwz -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dh_installdeb -O--sourcedirectory=src dh_gencontrol -O--sourcedirectory=src dh_md5sums -O--sourcedirectory=src dh_builddeb -O--sourcedirectory=src dpkg-deb: building package 'glam2' in '../glam2_1064-9_arm64.deb'. dpkg-deb: building package 'glam2-dbgsym' in '../glam2-dbgsym_1064-9_arm64.deb'. dpkg-genbuildinfo --build=binary -O../glam2_1064-9_arm64.buildinfo dpkg-genchanges --build=binary -O../glam2_1064-9_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/8708 and its subdirectories I: Current time: Fri Apr 14 17:45:11 -12 2023 I: pbuilder-time-stamp: 1681537511 Sat Apr 15 05:45:13 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink11-arm64.debian.net. Sat Apr 15 05:45:13 UTC 2023 I: Preparing to do remote build '2' on codethink11-arm64.debian.net. Sat Apr 15 05:47:57 UTC 2023 I: Deleting $TMPDIR on codethink11-arm64.debian.net. Sat Apr 15 05:47:58 UTC 2023 I: glam2_1064-9_arm64.changes: Format: 1.8 Date: Mon, 07 Dec 2020 22:07:41 +0100 Source: glam2 Binary: glam2 glam2-dbgsym Architecture: arm64 Version: 1064-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: glam2 - gapped protein motifs from unaligned sequences Changes: glam2 (1064-9) unstable; urgency=medium . * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Secure URI in copyright format (routine-update) * Remove trailing whitespace in debian/changelog (routine-update) * rename debian/NEWS.Debian debian/NEWS (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Trim trailing whitespace. * Set field Upstream-Name in debian/copyright. * Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright). Checksums-Sha1: 02e5009b72bf198ea653fb41d331f781caef47cc 256936 glam2-dbgsym_1064-9_arm64.deb 659fc3772e8eafdee2a0cd5bdf9df37ecd6ecd3a 5243 glam2_1064-9_arm64.buildinfo 25a0100ce571f9136c4b96e2625eae25fb94a003 228444 glam2_1064-9_arm64.deb Checksums-Sha256: 67c6dbb325efd53ce316e8442d7136d7f0471ca2af742afb09956c40477fc409 256936 glam2-dbgsym_1064-9_arm64.deb 1db2a1eb9db7832edbde31d33bfbfbcba026c5ce2c99221e68be271b02e18618 5243 glam2_1064-9_arm64.buildinfo 050250c1ef971a06580ad3091bfd08b9b4ca9e504703708b5445c2094046b2b4 228444 glam2_1064-9_arm64.deb Files: 24433043ea957799dc260280f01cf48e 256936 debug optional glam2-dbgsym_1064-9_arm64.deb 092f6c207ab7e3ac7de4df1b1f3b863b 5243 science optional glam2_1064-9_arm64.buildinfo e3f5718980ecd454df5200a16542322a 228444 science optional glam2_1064-9_arm64.deb Sat Apr 15 05:47:59 UTC 2023 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.nkvvNzDV/glam2_1064-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.nkvvNzDV/glam2_1064-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.nkvvNzDV/glam2_1064-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.nkvvNzDV/b1/glam2_1064-9_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.nkvvNzDV/b2/glam2_1064-9_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.355s) 0.355s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.021s) 0.021s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Sat Apr 15 05:48:00 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Sat Apr 15 05:48:00 UTC 2023 I: glam2 from bookworm built successfully and reproducibly on arm64. Sat Apr 15 05:48:01 UTC 2023 I: Submitting .buildinfo files to external archives: Sat Apr 15 05:48:01 UTC 2023 I: Submitting 8.0K b1/glam2_1064-9_arm64.buildinfo.asc Sat Apr 15 05:48:02 UTC 2023 I: Submitting 8.0K b2/glam2_1064-9_arm64.buildinfo.asc Sat Apr 15 05:48:03 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Apr 15 05:48:03 UTC 2023 I: Done submitting .buildinfo files. Sat Apr 15 05:48:03 UTC 2023 I: Removing signed glam2_1064-9_arm64.buildinfo.asc files: removed './b1/glam2_1064-9_arm64.buildinfo.asc' removed './b2/glam2_1064-9_arm64.buildinfo.asc'