Sun Apr 30 08:43:02 UTC 2023 I: starting to build daligner/bookworm/arm64 on jenkins on '2023-04-30 08:42' Sun Apr 30 08:43:02 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_31/10549/console.log Sun Apr 30 08:43:02 UTC 2023 I: Downloading source for bookworm/daligner=1.0+git20221215.bd26967-1 --2023-04-30 08:43:03-- http://cdn-fastly.deb.debian.org/debian/pool/main/d/daligner/daligner_1.0%2bgit20221215.bd26967-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2151 (2.1K) [text/prs.lines.tag] Saving to: ‘daligner_1.0+git20221215.bd26967-1.dsc’ 0K .. 100% 8.40M=0s 2023-04-30 08:43:03 (8.40 MB/s) - ‘daligner_1.0+git20221215.bd26967-1.dsc’ saved [2151/2151] Sun Apr 30 08:43:03 UTC 2023 I: daligner_1.0+git20221215.bd26967-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: daligner Binary: daligner Architecture: any Version: 1.0+git20221215.bd26967-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://dazzlerblog.wordpress.com Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/daligner Vcs-Git: https://salsa.debian.org/med-team/daligner.git Testsuite: autopkgtest Testsuite-Triggers: dazzdb Build-Depends: debhelper-compat (= 13) Package-List: daligner deb science optional arch=any Checksums-Sha1: d75c58d9a6f5820b5d45a54923731566f3a40e7b 126024 daligner_1.0+git20221215.bd26967.orig.tar.xz 0d1051fb110e6babd003d415b206a6691829e1d0 6524 daligner_1.0+git20221215.bd26967-1.debian.tar.xz Checksums-Sha256: d4b19e89c15274f807489044a2a6f627d0d04e6e27ac7a596a21dadf34519906 126024 daligner_1.0+git20221215.bd26967.orig.tar.xz fff6dee958198f448eddfce6fdc777cb3659fb0f78b95f97f213d55d56b2e509 6524 daligner_1.0+git20221215.bd26967-1.debian.tar.xz Files: f276310130c836291211ed73f45642f5 126024 daligner_1.0+git20221215.bd26967.orig.tar.xz 301d7ec8f0d0be2941965c074feefe99 6524 daligner_1.0+git20221215.bd26967-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPg0NERHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEkDw//R4azco9IYKyz5uX62anvegrOVxc4+Lb6 FABywuFxPn6ES93kilGuTTWi91GLgLIfdFwKt3+0CtyWggKihucLP8RhKvlw4FaA bS1RBtAhMKIO/hYTpVkZyZprZ1JPZ8NN3mA1POrcf9m4vg+ztwoXmy44M0pRGmZe eWOIE04im/F9ZH5lnbQdqXOLEIfEW8iNvTbMp/PmouqhkU3SFPcIFeJrCCRwnUvp KWEHS7A6IeUilpe5SCwmRJXFIw1YlsNH+omwYXV7l59p7MU6nO0u0JkdbUjtGHPM OBtOBYsmd7MEuOcisYLfrLJ9Rmy8xlzJmTB1aTk+15r5e8b446802aolalYYQKnL wx569WhNS4fkWZdUPdYqIXK2ol0/LvymK+BnXHKMsaqDsrfiVIa2RQ+bNHMnBr+x woGvfM4pK5n/7558CCucpcUD+91+gxj6t+RK93o+xT67LWrLD74EmKw5JcjBJ6/c P8Q89PK0YUa7p2L2kGj1nUA51AscbpVPDCMEbbvKr8mDcp2RNySPxLg89bdE8z7I aKnuyDNc0VQagxtkvKgEExYCE4hXJYlZiw/YcqLO4p7L08Pl90+K46MDoCWf1Lwe 5gJj8/kRN9e3HwvJw3U1R3S4GBCcmEuGQBm3QmYOO4fFLiyDKHJ5wZnL2iklpn3N 66jZx9jU0As= =sHtt -----END PGP SIGNATURE----- Sun Apr 30 08:43:03 UTC 2023 I: Checking whether the package is not for us Sun Apr 30 08:43:03 UTC 2023 I: Starting 1st build on remote node codethink16-arm64.debian.net. Sun Apr 30 08:43:03 UTC 2023 I: Preparing to do remote build '1' on codethink16-arm64.debian.net. Sun Apr 30 08:44:19 UTC 2023 I: Deleting $TMPDIR on codethink16-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Apr 29 20:43:06 -12 2023 I: pbuilder-time-stamp: 1682844186 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [daligner_1.0+git20221215.bd26967-1.dsc] I: copying [./daligner_1.0+git20221215.bd26967.orig.tar.xz] I: copying [./daligner_1.0+git20221215.bd26967-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Feb 5 22:05:05 2023 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./daligner_1.0+git20221215.bd26967-1.dsc: no acceptable signature found dpkg-source: info: extracting daligner in daligner-1.0+git20221215.bd26967 dpkg-source: info: unpacking daligner_1.0+git20221215.bd26967.orig.tar.xz dpkg-source: info: unpacking daligner_1.0+git20221215.bd26967-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying cflags.patch dpkg-source: info: applying lddflags.patch dpkg-source: info: applying destdir-install.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying cppflags.patch dpkg-source: info: applying typos.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/11674/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='11674' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NsKcvrkT/pbuilderrc_7YjS --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NsKcvrkT/b1 --logfile b1/build.log daligner_1.0+git20221215.bd26967-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink16-arm64 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 25 22:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/11674/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 18.3 MB of archives. After unpacking 74.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Fetched 18.3 MB in 2s (9840 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../02-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../22-libelf1_0.188-2.1_arm64.deb ... Unpacking libelf1:arm64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../24-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.2_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-12_arm64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libicu72:arm64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-12) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.11.4) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/daligner-1.0+git20221215.bd26967/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../daligner_1.0+git20221215.bd26967-1_source.changes dpkg-buildpackage: info: source package daligner dpkg-buildpackage: info: source version 1.0+git20221215.bd26967-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j8 clean make[1]: Entering directory '/build/daligner-1.0+git20221215.bd26967' rm -f daligner HPC.daligner LAsort LAmerge LAsplit LAcat LAshow LA2ONE LAcheck ONE2LA rm -fr *.dSYM rm -f daligner.tar.gz make[1]: Leaving directory '/build/daligner-1.0+git20221215.bd26967' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j8 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/daligner-1.0+git20221215.bd26967' cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/daligner-1.0+git20221215.bd26967=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -o daligner daligner.c filter.c lsd.sort.c align.c DB.c QV.c -lpthread -lm -Wl,-z,relro -Wl,-z,now cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/daligner-1.0+git20221215.bd26967=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -o HPC.daligner HPC.daligner.c DB.c QV.c -lm -Wl,-z,relro -Wl,-z,now cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/daligner-1.0+git20221215.bd26967=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -o LAsort LAsort.c DB.c QV.c -lm -Wl,-z,relro -Wl,-z,now cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/daligner-1.0+git20221215.bd26967=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -o LAmerge LAmerge.c DB.c QV.c -lm -Wl,-z,relro -Wl,-z,now cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/daligner-1.0+git20221215.bd26967=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -o LAsplit LAsplit.c DB.c QV.c -lm -Wl,-z,relro -Wl,-z,now cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/daligner-1.0+git20221215.bd26967=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -o LAcat LAcat.c DB.c QV.c -lm -Wl,-z,relro -Wl,-z,now cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/daligner-1.0+git20221215.bd26967=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -o LAshow LAshow.c align.c DB.c QV.c -lm -Wl,-z,relro -Wl,-z,now cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/daligner-1.0+git20221215.bd26967=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -o LA2ONE LA2ONE.c align.c DB.c QV.c ONElib.c -lm -Wl,-z,relro -Wl,-z,now filter.c: In function 'report_thread': filter.c:2155:23: warning: suggest braces around empty body in an 'else' statement [-Wempty-body] 2155 | ; | ^ cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/daligner-1.0+git20221215.bd26967=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -o LAcheck LAcheck.c align.c DB.c QV.c -lm -Wl,-z,relro -Wl,-z,now cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/daligner-1.0+git20221215.bd26967=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -o ONE2LA ONE2LA.c align.c DB.c QV.c ONElib.c -lm -Wl,-z,relro -Wl,-z,now ONE2LA.c: In function 'main': ONE2LA.c:135:13: warning: assignment to 'int64 *' {aka 'long long int *'} from incompatible pointer type 'I64 *' {aka 'long int *'} [-Wincompatible-pointer-types] 135 | list = oneIntList(file1); | ^ ONE2LA.c:202:20: warning: assignment to 'int64 *' {aka 'long long int *'} from incompatible pointer type 'I64 *' {aka 'long int *'} [-Wincompatible-pointer-types] 202 | list = oneIntList(file1); | ^ ONE2LA.c:210:20: warning: assignment to 'int64 *' {aka 'long long int *'} from incompatible pointer type 'I64 *' {aka 'long int *'} [-Wincompatible-pointer-types] 210 | list = oneIntList(file1); | ^ ONE2LA.c:220:20: warning: assignment to 'int64 *' {aka 'long long int *'} from incompatible pointer type 'I64 *' {aka 'long int *'} [-Wincompatible-pointer-types] 220 | list = oneIntList(file1); | ^ ONE2LA.c:227:20: warning: assignment to 'int64 *' {aka 'long long int *'} from incompatible pointer type 'I64 *' {aka 'long int *'} [-Wincompatible-pointer-types] 227 | list = oneIntList(file1); | ^ ONE2LA.c:30:20: warning: variable 'small' set but not used [-Wunused-but-set-variable] 30 | int tspace, small, tbytes; | ^~~~~ ONElib.c: In function 'oneSchemaCreateDynamic': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:390:3: note: in expansion of macro 'assert' 390 | assert (fileType && strlen(fileType) > 0) ; | ^~~~~~ ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:391:3: note: in expansion of macro 'assert' 391 | assert (!subType || strlen(subType) > 0) ; | ^~~~~~ ONElib.c: In function 'readBuf': ONElib.c:614:40: warning: comparison is always false due to limited range of data type [-Wtype-limits] 614 | if (isspace(x) || x == '\0' || x == EOF) | ^~ ONElib.c: In function 'readString': ONElib.c:662:32: warning: comparison is always false due to limited range of data type [-Wtype-limits] 662 | if (*cp == '\n' || *cp == EOF) | ^~ ONElib.c: In function 'readFlush': ONElib.c:693:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 693 | if (x == EOF) | ^~ ONElib.c: In function 'oneReadLine': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:943:3: note: in expansion of macro 'assert' 943 | assert (!vf->isWrite) ; | ^~~~~~ ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:944:3: note: in expansion of macro 'assert' 944 | assert (!vf->isFinal) ; | ^~~~~~ ONElib.c: In function 'oneFileOpenRead': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:1156:3: note: in expansion of macro 'assert' 1156 | assert (fileType == NULL || strlen(fileType) > 0) ; | ^~~~~~ ONElib.c: In function 'addProvenance': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:1758:3: note: in expansion of macro 'assert' 1758 | assert (!vf->isHeaderOut) ; | ^~~~~~ ONElib.c: In function 'oneAddProvenance': ONElib.c:1792:29: warning: implicit declaration of function 'vasprintf'; did you mean 'vsprintf'? [-Wimplicit-function-declaration] 1792 | va_start (args, format) ; vasprintf (&p.command, format, args) ; va_end (args) ; | ^~~~~~~~~ | vsprintf ONElib.c: In function 'addReference': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:1809:3: note: in expansion of macro 'assert' 1809 | assert (!vf->isHeaderOut) ; | ^~~~~~ ONElib.c: In function 'writeHeader': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:1883:3: note: in expansion of macro 'assert' 1883 | assert (vf->isWrite) ; | ^~~~~~ ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:1884:3: note: in expansion of macro 'assert' 1884 | assert (vf->line == 0) ; | ^~~~~~ ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:1885:3: note: in expansion of macro 'assert' 1885 | assert (vf->share >= 0) ; | ^~~~~~ ONElib.c: In function 'oneWriteLine': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:2027:3: note: in expansion of macro 'assert' 2027 | assert (vf->isWrite) ; | ^~~~~~ ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:2028:3: note: in expansion of macro 'assert' 2028 | assert (!vf->isFinal || !isalpha(t)) ; | ^~~~~~ ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:2031:3: note: in expansion of macro 'assert' 2031 | assert (li) ; | ^~~~~~ ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:2038:7: note: in expansion of macro 'assert' 2038 | { assert (listLen >= 0) ; | ^~~~~~ ONElib.c: In function 'oneFileClose': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:2486:3: note: in expansion of macro 'assert' 2486 | assert (vf->share >= 0) ; | ^~~~~~ ONElib.c: In function 'intGet': ONElib.c:3488:17: warning: this statement may fall through [-Wimplicit-fallthrough=] 3488 | case 0: die ("int packing error") ; | ^~~~~~~~~~~~~~~~~~~~~~~~~ ONElib.c:3489:9: note: here 3489 | case 1: *pval = *(I64*)(u+1) & 0x0000000000ffff ; return 3 ; | ^~~~ ONElib.c:3500:17: warning: this statement may fall through [-Wimplicit-fallthrough=] 3500 | case 0: die ("int packing error") ; | ^~~~~~~~~~~~~~~~~~~~~~~~~ ONElib.c:3501:9: note: here 3501 | case 1: *pval = *(I64*)(u+1) | 0xffffffffffff0000 ; return 3 ; | ^~~~ ONElib.c:3486:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 3486 | switch (u[0] & 0x07) | ^~~~~~ ONElib.c:3497:5: note: here 3497 | case 4: | ^~~~ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7: ONElib.c:3501:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3501 | case 1: *pval = *(I64*)(u+1) | 0xffffffffffff0000 ; return 3 ; | ^~~~~~~~~~~~ ONElib.c: In function 'ltfRead': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7: ONElib.c:3502:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3502 | case 2: *pval = *(I64*)(u+1) | 0xffffffffff000000 ; return 4 ; | ^~~~~~~~~~~~ ONElib.c: In function 'ltfRead': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7: ONElib.c:3503:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3503 | case 3: *pval = *(I64*)(u+1) | 0xffffffff00000000 ; return 5 ; | ^~~~~~~~~~~~ ONElib.c: In function 'ltfRead': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7: ONElib.c:3504:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3504 | case 4: *pval = *(I64*)(u+1) | 0xffffff0000000000 ; return 6 ; | ^~~~~~~~~~~~ ONElib.c: In function 'ltfRead': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7: ONElib.c:3505:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3505 | case 5: *pval = *(I64*)(u+1) | 0xffff000000000000 ; return 7 ; | ^~~~~~~~~~~~ ONElib.c: In function 'ltfRead': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7: ONElib.c:3506:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3506 | case 6: *pval = *(I64*)(u+1) | 0xff00000000000000 ; return 8 ; | ^~~~~~~~~~~~ ONElib.c: In function 'ltfRead': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7: ONElib.c:3507:23: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3507 | case 7: *pval = *(I64*)(u+1) ; return 9 ; | ~~~~~~^~~~~~~~~~~~~~ ONElib.c: In function 'ltfRead': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7, inlined from 'readCompressedFields' at ONElib.c:894:15, inlined from 'oneReadLine' at ONElib.c:1037:2: ONElib.c:3501:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3501 | case 1: *pval = *(I64*)(u+1) | 0xffffffffffff0000 ; return 3 ; | ^~~~~~~~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7, inlined from 'readCompressedFields' at ONElib.c:894:15, inlined from 'oneReadLine' at ONElib.c:1037:2: ONElib.c:3502:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3502 | case 2: *pval = *(I64*)(u+1) | 0xffffffffff000000 ; return 4 ; | ^~~~~~~~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7, inlined from 'readCompressedFields' at ONElib.c:894:15, inlined from 'oneReadLine' at ONElib.c:1037:2: ONElib.c:3503:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3503 | case 3: *pval = *(I64*)(u+1) | 0xffffffff00000000 ; return 5 ; | ^~~~~~~~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7, inlined from 'readCompressedFields' at ONElib.c:894:15, inlined from 'oneReadLine' at ONElib.c:1037:2: ONElib.c:3504:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3504 | case 4: *pval = *(I64*)(u+1) | 0xffffff0000000000 ; return 6 ; | ^~~~~~~~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7, inlined from 'readCompressedFields' at ONElib.c:894:15, inlined from 'oneReadLine' at ONElib.c:1037:2: ONElib.c:3505:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3505 | case 5: *pval = *(I64*)(u+1) | 0xffff000000000000 ; return 7 ; | ^~~~~~~~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7, inlined from 'readCompressedFields' at ONElib.c:894:15, inlined from 'oneReadLine' at ONElib.c:1037:2: ONElib.c:3506:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3506 | case 6: *pval = *(I64*)(u+1) | 0xff00000000000000 ; return 8 ; | ^~~~~~~~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7, inlined from 'readCompressedFields' at ONElib.c:894:15, inlined from 'oneReadLine' at ONElib.c:1037:2: ONElib.c:3507:23: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3507 | case 7: *pval = *(I64*)(u+1) ; return 9 ; | ~~~~~~^~~~~~~~~~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ ONElib.c: In function 'oneFileOpenWriteFrom': ONElib.c:393:33: warning: '%ld' directive writing between 1 and 19 bytes into a region of size between 7 and 25 [-Wformat-overflow=] 393 | sprintf (text, "P %ld %s\nS %ld %s\n", strlen(fileType),fileType, strlen(subType), subType) ; | ^~~ In function 'oneSchemaCreateDynamic', inlined from 'oneFileOpenWriteFrom' at ONElib.c:1655:20: ONElib.c:393:20: note: directive argument in the range [0, 9223372036854775805] 393 | sprintf (text, "P %ld %s\nS %ld %s\n", strlen(fileType),fileType, strlen(subType), subType) ; | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:906, from ONElib.h:20, from ONElib.c:38: In function 'sprintf', inlined from 'oneSchemaCreateDynamic' at ONElib.c:393:5, inlined from 'oneFileOpenWriteFrom' at ONElib.c:1655:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output 11 or more bytes (assuming 47) into a destination of size 32 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ONElib.c: In function 'oneSchemaCreateDynamic': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:390:3: note: in expansion of macro 'assert' 390 | assert (fileType && strlen(fileType) > 0) ; | ^~~~~~ ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:391:3: note: in expansion of macro 'assert' 391 | assert (!subType || strlen(subType) > 0) ; | ^~~~~~ ONElib.c: In function 'readBuf': ONElib.c:614:40: warning: comparison is always false due to limited range of data type [-Wtype-limits] 614 | if (isspace(x) || x == '\0' || x == EOF) | ^~ ONElib.c: In function 'readString': ONElib.c:662:32: warning: comparison is always false due to limited range of data type [-Wtype-limits] 662 | if (*cp == '\n' || *cp == EOF) | ^~ ONElib.c: In function 'readFlush': ONElib.c:693:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 693 | if (x == EOF) | ^~ ONElib.c: In function 'oneReadLine': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:943:3: note: in expansion of macro 'assert' 943 | assert (!vf->isWrite) ; | ^~~~~~ ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:944:3: note: in expansion of macro 'assert' 944 | assert (!vf->isFinal) ; | ^~~~~~ ONElib.c: In function 'oneFileOpenRead': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:1156:3: note: in expansion of macro 'assert' 1156 | assert (fileType == NULL || strlen(fileType) > 0) ; | ^~~~~~ ONElib.c: In function 'addProvenance': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:1758:3: note: in expansion of macro 'assert' 1758 | assert (!vf->isHeaderOut) ; | ^~~~~~ ONElib.c: In function 'oneAddProvenance': ONElib.c:1792:29: warning: implicit declaration of function 'vasprintf'; did you mean 'vsprintf'? [-Wimplicit-function-declaration] 1792 | va_start (args, format) ; vasprintf (&p.command, format, args) ; va_end (args) ; | ^~~~~~~~~ | vsprintf ONElib.c: In function 'addReference': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:1809:3: note: in expansion of macro 'assert' 1809 | assert (!vf->isHeaderOut) ; | ^~~~~~ ONElib.c: In function 'writeHeader': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:1883:3: note: in expansion of macro 'assert' 1883 | assert (vf->isWrite) ; | ^~~~~~ ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:1884:3: note: in expansion of macro 'assert' 1884 | assert (vf->line == 0) ; | ^~~~~~ ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:1885:3: note: in expansion of macro 'assert' 1885 | assert (vf->share >= 0) ; | ^~~~~~ ONElib.c: In function 'oneWriteLine': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:2027:3: note: in expansion of macro 'assert' 2027 | assert (vf->isWrite) ; | ^~~~~~ ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:2028:3: note: in expansion of macro 'assert' 2028 | assert (!vf->isFinal || !isalpha(t)) ; | ^~~~~~ ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:2031:3: note: in expansion of macro 'assert' 2031 | assert (li) ; | ^~~~~~ ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:2038:7: note: in expansion of macro 'assert' 2038 | { assert (listLen >= 0) ; | ^~~~~~ ONElib.c: In function 'oneFileClose': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:2486:3: note: in expansion of macro 'assert' 2486 | assert (vf->share >= 0) ; | ^~~~~~ ONElib.c: In function 'intGet': ONElib.c:3488:17: warning: this statement may fall through [-Wimplicit-fallthrough=] 3488 | case 0: die ("int packing error") ; | ^~~~~~~~~~~~~~~~~~~~~~~~~ ONElib.c:3489:9: note: here 3489 | case 1: *pval = *(I64*)(u+1) & 0x0000000000ffff ; return 3 ; | ^~~~ ONElib.c:3500:17: warning: this statement may fall through [-Wimplicit-fallthrough=] 3500 | case 0: die ("int packing error") ; | ^~~~~~~~~~~~~~~~~~~~~~~~~ ONElib.c:3501:9: note: here 3501 | case 1: *pval = *(I64*)(u+1) | 0xffffffffffff0000 ; return 3 ; | ^~~~ ONElib.c:3486:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 3486 | switch (u[0] & 0x07) | ^~~~~~ ONElib.c:3497:5: note: here 3497 | case 4: | ^~~~ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7: ONElib.c:3501:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3501 | case 1: *pval = *(I64*)(u+1) | 0xffffffffffff0000 ; return 3 ; | ^~~~~~~~~~~~ ONElib.c: In function 'ltfRead': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7: ONElib.c:3502:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3502 | case 2: *pval = *(I64*)(u+1) | 0xffffffffff000000 ; return 4 ; | ^~~~~~~~~~~~ ONElib.c: In function 'ltfRead': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7: ONElib.c:3503:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3503 | case 3: *pval = *(I64*)(u+1) | 0xffffffff00000000 ; return 5 ; | ^~~~~~~~~~~~ ONElib.c: In function 'ltfRead': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7: ONElib.c:3504:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3504 | case 4: *pval = *(I64*)(u+1) | 0xffffff0000000000 ; return 6 ; | ^~~~~~~~~~~~ ONElib.c: In function 'ltfRead': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7: ONElib.c:3505:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3505 | case 5: *pval = *(I64*)(u+1) | 0xffff000000000000 ; return 7 ; | ^~~~~~~~~~~~ ONElib.c: In function 'ltfRead': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7: ONElib.c:3506:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3506 | case 6: *pval = *(I64*)(u+1) | 0xff00000000000000 ; return 8 ; | ^~~~~~~~~~~~ ONElib.c: In function 'ltfRead': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7: ONElib.c:3507:23: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3507 | case 7: *pval = *(I64*)(u+1) ; return 9 ; | ~~~~~~^~~~~~~~~~~~~~ ONElib.c: In function 'ltfRead': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7, inlined from 'readCompressedFields' at ONElib.c:894:15, inlined from 'oneReadLine' at ONElib.c:1037:2: ONElib.c:3501:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3501 | case 1: *pval = *(I64*)(u+1) | 0xffffffffffff0000 ; return 3 ; | ^~~~~~~~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7, inlined from 'readCompressedFields' at ONElib.c:894:15, inlined from 'oneReadLine' at ONElib.c:1037:2: ONElib.c:3502:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3502 | case 2: *pval = *(I64*)(u+1) | 0xffffffffff000000 ; return 4 ; | ^~~~~~~~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7, inlined from 'readCompressedFields' at ONElib.c:894:15, inlined from 'oneReadLine' at ONElib.c:1037:2: ONElib.c:3503:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3503 | case 3: *pval = *(I64*)(u+1) | 0xffffffff00000000 ; return 5 ; | ^~~~~~~~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7, inlined from 'readCompressedFields' at ONElib.c:894:15, inlined from 'oneReadLine' at ONElib.c:1037:2: ONElib.c:3504:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3504 | case 4: *pval = *(I64*)(u+1) | 0xffffff0000000000 ; return 6 ; | ^~~~~~~~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7, inlined from 'readCompressedFields' at ONElib.c:894:15, inlined from 'oneReadLine' at ONElib.c:1037:2: ONElib.c:3505:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3505 | case 5: *pval = *(I64*)(u+1) | 0xffff000000000000 ; return 7 ; | ^~~~~~~~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7, inlined from 'readCompressedFields' at ONElib.c:894:15, inlined from 'oneReadLine' at ONElib.c:1037:2: ONElib.c:3506:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3506 | case 6: *pval = *(I64*)(u+1) | 0xff00000000000000 ; return 8 ; | ^~~~~~~~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7, inlined from 'readCompressedFields' at ONElib.c:894:15, inlined from 'oneReadLine' at ONElib.c:1037:2: ONElib.c:3507:23: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3507 | case 7: *pval = *(I64*)(u+1) ; return 9 ; | ~~~~~~^~~~~~~~~~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ ONElib.c: In function 'oneFileOpenWriteFrom': ONElib.c:393:33: warning: '%ld' directive writing between 1 and 19 bytes into a region of size between 7 and 25 [-Wformat-overflow=] 393 | sprintf (text, "P %ld %s\nS %ld %s\n", strlen(fileType),fileType, strlen(subType), subType) ; | ^~~ In function 'oneSchemaCreateDynamic', inlined from 'oneFileOpenWriteFrom' at ONElib.c:1655:20: ONElib.c:393:20: note: directive argument in the range [0, 9223372036854775805] 393 | sprintf (text, "P %ld %s\nS %ld %s\n", strlen(fileType),fileType, strlen(subType), subType) ; | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:906, from ONElib.h:20, from ONElib.c:38: In function 'sprintf', inlined from 'oneSchemaCreateDynamic' at ONElib.c:393:5, inlined from 'oneFileOpenWriteFrom' at ONElib.c:1655:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output 11 or more bytes (assuming 47) into a destination of size 32 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/build/daligner-1.0+git20221215.bd26967' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/daligner-1.0+git20221215.bd26967' dh_auto_install make -j8 install DESTDIR=/build/daligner-1.0\+git20221215.bd26967/debian/daligner AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/daligner-1.0+git20221215.bd26967' install -d /build/daligner-1.0+git20221215.bd26967/debian/daligner/usr/bin install daligner HPC.daligner LAsort LAmerge LAsplit LAcat LAshow LA2ONE LAcheck ONE2LA /build/daligner-1.0+git20221215.bd26967/debian/daligner/usr/bin make[2]: Leaving directory '/build/daligner-1.0+git20221215.bd26967' mkdir -p /build/daligner-1.0+git20221215.bd26967/debian/daligner/usr/share/man/man1 for command in /build/daligner-1.0+git20221215.bd26967/debian/daligner/usr/bin/*; \ do \ if [ $(basename $command) != daligner ] ; \ then \ ln -s daligner.1 \ /build/daligner-1.0+git20221215.bd26967/debian/daligner/usr/share/man/man1/$(basename $command).1 ; \ fi; \ done make[1]: Leaving directory '/build/daligner-1.0+git20221215.bd26967' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'daligner-dbgsym' in '../daligner-dbgsym_1.0+git20221215.bd26967-1_arm64.deb'. dpkg-deb: building package 'daligner' in '../daligner_1.0+git20221215.bd26967-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../daligner_1.0+git20221215.bd26967-1_arm64.buildinfo dpkg-genchanges --build=binary -O../daligner_1.0+git20221215.bd26967-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/11674 and its subdirectories I: Current time: Sat Apr 29 20:44:18 -12 2023 I: pbuilder-time-stamp: 1682844258 Sun Apr 30 08:44:20 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink13-arm64.debian.net. Sun Apr 30 08:44:20 UTC 2023 I: Preparing to do remote build '2' on codethink13-arm64.debian.net. Sun Apr 30 08:46:29 UTC 2023 I: Deleting $TMPDIR on codethink13-arm64.debian.net. Sun Apr 30 08:46:30 UTC 2023 I: daligner_1.0+git20221215.bd26967-1_arm64.changes: Format: 1.8 Date: Mon, 06 Feb 2023 11:01:05 +0100 Source: daligner Binary: daligner daligner-dbgsym Architecture: arm64 Version: 1.0+git20221215.bd26967-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: daligner - local alignment discovery between long nucleotide sequencing read Changes: daligner (1.0+git20221215.bd26967-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: 51f7340d7705cabbabc9e8c1bfb2c9e08a9ee323 1662212 daligner-dbgsym_1.0+git20221215.bd26967-1_arm64.deb c92db90d5be81e22fa333bf70cff5625c325eb89 5275 daligner_1.0+git20221215.bd26967-1_arm64.buildinfo d1c7bb04c555f6583155219df0a54940f581f1af 203132 daligner_1.0+git20221215.bd26967-1_arm64.deb Checksums-Sha256: 80927370c2ed2f9e4eacbfc72480219672a017fd165aab4964df2f3309d50520 1662212 daligner-dbgsym_1.0+git20221215.bd26967-1_arm64.deb fa89876a1e3a34cb843160dfc382074bfa1e9a50c3fff0ba547c5e109deebf41 5275 daligner_1.0+git20221215.bd26967-1_arm64.buildinfo 0fdd334249f9b9061cd3cfa43bc51f4bd8c38a2effa5e762c6de25543998a603 203132 daligner_1.0+git20221215.bd26967-1_arm64.deb Files: d292896790b8a4d05b19faa54bb88422 1662212 debug optional daligner-dbgsym_1.0+git20221215.bd26967-1_arm64.deb 3bca8233f8a06f3611da542f0af1ab8b 5275 science optional daligner_1.0+git20221215.bd26967-1_arm64.buildinfo a0aee56d743125d9f0b684d73563de9f 203132 science optional daligner_1.0+git20221215.bd26967-1_arm64.deb Sun Apr 30 08:46:31 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.NsKcvrkT/daligner_1.0+git20221215.bd26967-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.NsKcvrkT/daligner_1.0+git20221215.bd26967-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.NsKcvrkT/daligner_1.0+git20221215.bd26967-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.NsKcvrkT/b1/daligner_1.0+git20221215.bd26967-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.NsKcvrkT/b2/daligner_1.0+git20221215.bd26967-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.367s) 0.367s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.036s) 0.036s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Sun Apr 30 08:46:32 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Sun Apr 30 08:46:32 UTC 2023 I: daligner from bookworm built successfully and reproducibly on arm64. Sun Apr 30 08:46:33 UTC 2023 I: Submitting .buildinfo files to external archives: Sun Apr 30 08:46:33 UTC 2023 I: Submitting 8.0K b1/daligner_1.0+git20221215.bd26967-1_arm64.buildinfo.asc Sun Apr 30 08:46:35 UTC 2023 I: Submitting 8.0K b2/daligner_1.0+git20221215.bd26967-1_arm64.buildinfo.asc Sun Apr 30 08:46:36 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Apr 30 08:46:36 UTC 2023 I: Done submitting .buildinfo files. Sun Apr 30 08:46:36 UTC 2023 I: Removing signed daligner_1.0+git20221215.bd26967-1_arm64.buildinfo.asc files: removed './b1/daligner_1.0+git20221215.bd26967-1_arm64.buildinfo.asc' removed './b2/daligner_1.0+git20221215.bd26967-1_arm64.buildinfo.asc'