Thu May 11 03:15:17 UTC 2023 I: starting to build pyranges/bookworm/amd64 on jenkins on '2023-05-11 03:14' Thu May 11 03:15:17 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_25/12001/console.log Thu May 11 03:15:17 UTC 2023 I: Downloading source for bookworm/pyranges=0.0.111+ds-4 --2023-05-11 03:15:17-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/pyranges/pyranges_0.0.111%2bds-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2255 (2.2K) [text/prs.lines.tag] Saving to: ‘pyranges_0.0.111+ds-4.dsc’ 0K .. 100% 165M=0s 2023-05-11 03:15:17 (165 MB/s) - ‘pyranges_0.0.111+ds-4.dsc’ saved [2255/2255] Thu May 11 03:15:17 UTC 2023 I: pyranges_0.0.111+ds-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pyranges Binary: python3-pyranges Architecture: all Version: 0.0.111+ds-4 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/biocore-ntnu/pyranges Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/pyranges Vcs-Git: https://salsa.debian.org/med-team/pyranges.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-python, python3-setuptools, python3-all, python3-ncls , python3-pyrle , python3-pytest , python3-pytest-xdist , python3-sorted-nearest, python3-hypothesis, bedtools, samtools Package-List: python3-pyranges deb python optional arch=all Checksums-Sha1: 3591cd303505955df6c34eec755d51f27bd38e5b 3288424 pyranges_0.0.111+ds.orig.tar.xz 62a73490cca6e2c687ad0f6e5b3c86dd9be180ac 81508 pyranges_0.0.111+ds-4.debian.tar.xz Checksums-Sha256: b22a50cb9e0109c8c14720385a5e87bef029f491d4f3e02dbe492866802144d1 3288424 pyranges_0.0.111+ds.orig.tar.xz eb034fd5dfcc4d2a078beb1c3e521265d5d413997060c73b48c0a43514e6ac6d 81508 pyranges_0.0.111+ds-4.debian.tar.xz Files: 2c48870491f89e171b4aeeaa5b3b216a 3288424 pyranges_0.0.111+ds.orig.tar.xz cebfdd6dfb03b08fd77fcc39edf2b8e7 81508 pyranges_0.0.111+ds-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPDEY0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtExyQ//fJMgpAWm2f8vGdDz0+Rf6EYXrkZnyU2P O34qeH4qtSmUyU5mAPvdxmQO2itUh5YekEREukS0uRBhMk/7cHUEaAgBPSvyFrdx KeUHmSiv52L1hRZOZxhnrCvwtoRw2ZL3huEg39Slbg3a1qPExZUNTYA/bi/YO8B3 8yQMIdMu0Dv5KR83Ov5AIUQ8pSEoJ3BIJCDqtSujLqsqXjkAaTuqisevpXZN/vw1 mLQYztf9lkv92QYBvDuc8h62VBVHT0DPx8Q67W0VToyOKAQET47Pf/dgic9wREER 3fja+apdMrDltAjC2ZJGSDMUIhZaWyYhcL/lCw4ZG9NCx86E/Mn9gRkxAlpkd9q0 1UMGNnVx3tIc9r5d5ggX3EVd+yhZTFFoJyR3YV6C+xDC0YABwfT6v0Dhna4sCl3T FurDJAPhaBx1c/V42btF9DM5NUn6NelNOipChtDQYgDbzpf8trsOMiHXgf0DwVDo xcVoyfA4hjoelRIB/bOLXUrTpkZzyTabeJAotBgUgy6l//NCC9qfk9ByDyglcfg0 WyETAXELaftemk36n+r7PnnttD28sNCexRCQsIDZkPyyhy69QW/jafHyg2sAFpOG PVHMGzZrHLWEeLKbrVuAZoiQY9mJfGjloJjGUuUe3NM+YAnhdGCEtptxvSPQlsyp oIq0bMiBmz0= =GCjW -----END PGP SIGNATURE----- Thu May 11 03:15:17 UTC 2023 I: Checking whether the package is not for us Thu May 11 03:15:17 UTC 2023 I: Starting 1st build on remote node ionos1-amd64.debian.net. Thu May 11 03:15:17 UTC 2023 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Thu May 11 05:04:34 UTC 2023 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed May 10 15:15:19 -12 2023 I: pbuilder-time-stamp: 1683774919 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pyranges_0.0.111+ds-4.dsc] I: copying [./pyranges_0.0.111+ds.orig.tar.xz] I: copying [./pyranges_0.0.111+ds-4.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Jan 14 08:33:17 2023 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pyranges_0.0.111+ds-4.dsc: no acceptable signature found dpkg-source: info: extracting pyranges in pyranges-0.0.111+ds dpkg-source: info: unpacking pyranges_0.0.111+ds.orig.tar.xz dpkg-source: info: unpacking pyranges_0.0.111+ds-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_dtype.patch dpkg-source: info: applying reorder.patch dpkg-source: info: applying numpy_1.24.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1609083/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='9f582825d82f421fb1df55d3b1f41cfa' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1609083' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eFurzAYd/pbuilderrc_1YfE --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eFurzAYd/b1 --logfile b1/build.log pyranges_0.0.111+ds-4.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 5.10.0-22-amd64 #1 SMP Debian 5.10.178-3 (2023-04-22) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/1609083/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-setuptools, python3-all, python3-ncls, python3-pyrle, python3-pytest, python3-pytest-xdist, python3-sorted-nearest, python3-hypothesis, bedtools, samtools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-ncls; however: Package python3-ncls is not installed. pbuilder-satisfydepends-dummy depends on python3-pyrle; however: Package python3-pyrle is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-xdist; however: Package python3-pytest-xdist is not installed. pbuilder-satisfydepends-dummy depends on python3-sorted-nearest; however: Package python3-sorted-nearest is not installed. pbuilder-satisfydepends-dummy depends on python3-hypothesis; however: Package python3-hypothesis is not installed. pbuilder-satisfydepends-dummy depends on bedtools; however: Package bedtools is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcurl3-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libhts3{a} libhtscodecs2{a} libicu72{a} liblapack3{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-attr{a} python3-dateutil{a} python3-distutils{a} python3-execnet{a} python3-hypothesis{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-natsort{a} python3-ncls{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pyrle{a} python3-pytest{a} python3-pytest-xdist{a} python3-setuptools{a} python3-six{a} python3-sorted-nearest{a} python3-sortedcontainers{a} python3-tabulate{a} python3-tz{a} python3.11{a} python3.11-minimal{a} readline-common{a} samtools{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-bottleneck python3-bs4 python3-click python3-dev python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numba python3-numexpr python3-odf python3-openpyxl python3-pygments python3-scipy python3-tables wget 0 packages upgraded, 88 newly installed, 0 to remove and 0 not upgraded. Need to get 47.0 MB of archives. After unpacking 218 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 11 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 bedtools amd64 2.30.0+dfsg-3 [665 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 cython3 amd64 0.29.32-2+b1 [1302 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130 [104 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.88.1-9 [381 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 libhtscodecs2 amd64 1.3.0-4 [87.5 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libhts3 amd64 1.16+ds-3 [430 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 libncurses6 amd64 6.4-2 [103 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get: 64 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.2.0-1 [65.4 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.2-2 [78.3 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 python3-execnet all 1.9.0-1 [41.5 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 python3-sortedcontainers all 2.4.0-2 [31.9 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 python3-hypothesis all 6.67.1-1 [270 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 71 http://deb.debian.org/debian bookworm/main amd64 python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 python3-natsort all 8.0.2-2 [39.0 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 python3-ncls amd64 0.0.63-hotfix+ds-1+b3 [330 kB] Get: 76 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 python3-tz all 2022.7.1-3 [30.1 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 python3-pandas-lib amd64 1.5.3+dfsg-2 [3499 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 python3-pandas all 1.5.3+dfsg-2 [2885 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 python3-py all 1.11.0-1 [89.2 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 python3-tabulate all 0.8.9-1 [35.2 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 python3-pyrle amd64 0.0.33-4+b2 [242 kB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 python3-pytest all 7.2.1-2 [236 kB] Get: 85 http://deb.debian.org/debian bookworm/main amd64 python3-pytest-xdist all 3.1.0-1 [39.6 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB] Get: 87 http://deb.debian.org/debian bookworm/main amd64 python3-sorted-nearest amd64 0.0.38+dfsg-1 [437 kB] Get: 88 http://deb.debian.org/debian bookworm/main amd64 samtools amd64 1.16.1-1 [607 kB] Fetched 47.0 MB in 14s (3261 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19912 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_amd64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../3-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_amd64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20346 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../06-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.38.1-5+b1_amd64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../09-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.11.2-2_amd64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package bedtools. Preparing to unpack .../16-bedtools_2.30.0+dfsg-3_amd64.deb ... Unpacking bedtools (2.30.0+dfsg-3) ... Selecting previously unselected package cython3. Preparing to unpack .../17-cython3_0.29.32-2+b1_amd64.deb ... Unpacking cython3 (0.29.32-2+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../18-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../19-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../20-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../21-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../22-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../23-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../24-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../25-libelf1_0.188-2.1_amd64.deb ... Unpacking libelf1:amd64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../26-dwz_0.15-1_amd64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../27-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../28-libxml2_2.9.14+dfsg-1.2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.21-12_amd64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../33-python3-lib2to3_3.11.2-3_all.deb ... Unpacking python3-lib2to3 (3.11.2-3) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../34-python3-distutils_3.11.2-3_all.deb ... Unpacking python3-distutils (3.11.2-3) ... Selecting previously unselected package dh-python. Preparing to unpack .../35-dh-python_5.20230130_all.deb ... Unpacking dh-python (5.20230130) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../36-libblas3_3.11.0-2_amd64.deb ... Unpacking libblas3:amd64 (3.11.0-2) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../37-libbrotli1_1.0.9-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b6) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../38-libsasl2-modules-db_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../39-libsasl2-2_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../40-libldap-2.5-0_2.5.13+dfsg-5_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../41-libnghttp2-14_1.52.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.52.0-1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../42-libpsl5_0.21.2-1_amd64.deb ... Unpacking libpsl5:amd64 (0.21.2-1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../43-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../44-libssh2-1_1.10.0-3+b1_amd64.deb ... Unpacking libssh2-1:amd64 (1.10.0-3+b1) ... Selecting previously unselected package libcurl3-gnutls:amd64. Preparing to unpack .../45-libcurl3-gnutls_7.88.1-9_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.88.1-9) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../46-libdeflate0_1.14-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.14-1) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../47-libgfortran5_12.2.0-14_amd64.deb ... Unpacking libgfortran5:amd64 (12.2.0-14) ... Selecting previously unselected package libhtscodecs2:amd64. Preparing to unpack .../48-libhtscodecs2_1.3.0-4_amd64.deb ... Unpacking libhtscodecs2:amd64 (1.3.0-4) ... Selecting previously unselected package libhts3:amd64. Preparing to unpack .../49-libhts3_1.16+ds-3_amd64.deb ... Unpacking libhts3:amd64 (1.16+ds-3) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../50-liblapack3_3.11.0-2_amd64.deb ... Unpacking liblapack3:amd64 (3.11.0-2) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../51-libncurses6_6.4-2_amd64.deb ... Unpacking libncurses6:amd64 (6.4-2) ... Selecting previously unselected package python3-all. Preparing to unpack .../52-python3-all_3.11.2-1+b1_amd64.deb ... Unpacking python3-all (3.11.2-1+b1) ... Selecting previously unselected package python3-attr. Preparing to unpack .../53-python3-attr_22.2.0-1_all.deb ... Unpacking python3-attr (22.2.0-1) ... Selecting previously unselected package python3-six. Preparing to unpack .../54-python3-six_1.16.0-4_all.deb ... Unpacking python3-six (1.16.0-4) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../55-python3-dateutil_2.8.2-2_all.deb ... Unpacking python3-dateutil (2.8.2-2) ... Selecting previously unselected package python3-execnet. Preparing to unpack .../56-python3-execnet_1.9.0-1_all.deb ... Unpacking python3-execnet (1.9.0-1) ... Selecting previously unselected package python3-sortedcontainers. Preparing to unpack .../57-python3-sortedcontainers_2.4.0-2_all.deb ... Unpacking python3-sortedcontainers (2.4.0-2) ... Selecting previously unselected package python3-hypothesis. Preparing to unpack .../58-python3-hypothesis_6.67.1-1_all.deb ... Unpacking python3-hypothesis (6.67.1-1) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../59-python3-iniconfig_1.1.1-2_all.deb ... Unpacking python3-iniconfig (1.1.1-2) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../60-python3-more-itertools_8.10.0-2_all.deb ... Unpacking python3-more-itertools (8.10.0-2) ... Selecting previously unselected package python3-natsort. Preparing to unpack .../61-python3-natsort_8.0.2-2_all.deb ... Unpacking python3-natsort (8.0.2-2) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../62-python3-pkg-resources_66.1.1-1_all.deb ... Unpacking python3-pkg-resources (66.1.1-1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../63-python3-numpy_1%3a1.24.2-1_amd64.deb ... Unpacking python3-numpy (1:1.24.2-1) ... Selecting previously unselected package python3-ncls. Preparing to unpack .../64-python3-ncls_0.0.63-hotfix+ds-1+b3_amd64.deb ... Unpacking python3-ncls (0.0.63-hotfix+ds-1+b3) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../65-python3-packaging_23.0-1_all.deb ... Unpacking python3-packaging (23.0-1) ... Selecting previously unselected package python3-tz. Preparing to unpack .../66-python3-tz_2022.7.1-3_all.deb ... Unpacking python3-tz (2022.7.1-3) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../67-python3-pandas-lib_1.5.3+dfsg-2_amd64.deb ... Unpacking python3-pandas-lib:amd64 (1.5.3+dfsg-2) ... Selecting previously unselected package python3-pandas. 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Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up libnghttp2-14:amd64 (1.52.0-1) ... Setting up libmagic1:amd64 (1:5.44-3) ... Setting up libdeflate0:amd64 (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:amd64 (6.4-2) ... Setting up autopoint (0.21-12) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.2) ... Setting up bedtools (2.30.0+dfsg-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up libcurl3-gnutls:amd64 (7.88.1-9) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libhts3:amd64 (1.16+ds-3) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-sortedcontainers (2.4.0-2) ... Setting up python3-tz (2022.7.1-3) ... Setting up python3-natsort (8.0.2-2) ... Setting up samtools (1.16.1-1) ... Setting up python3-six (1.16.0-4) ... Setting up python3-packaging (23.0-1) ... Setting up cython3 (0.29.32-2+b1) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-execnet (1.9.0-1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-attr (22.2.0-1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-py (1.11.0-1) ... Setting up python3-pytest (7.2.1-2) ... Setting up python3-hypothesis (6.67.1-1) ... Setting up python3-tabulate (0.8.9-1) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-ncls (0.0.63-hotfix+ds-1+b3) ... Setting up python3-pytest-xdist (3.1.0-1) ... Setting up python3-pandas-lib:amd64 (1.5.3+dfsg-2) ... Setting up python3-sorted-nearest (0.0.38+dfsg-1) ... Setting up python3-pandas (1.5.3+dfsg-2) ... Setting up python3-pyrle (0.0.33-4+b2) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/pyranges-0.0.111+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pyranges_0.0.111+ds-4_source.changes dpkg-buildpackage: info: source package pyranges dpkg-buildpackage: info: source version 0.0.111+ds-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from pyranges-0.0.111+ds/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py clean 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config debian/rules override_dh_auto_build make[1]: Entering directory '/build/pyranges-0.0.111+ds' dh_auto_build I: pybuild base:240: /usr/bin/python3 setup.py build echo 'Generating corresponding files ...' Generating corresponding files ... cat debian/missing-sources/test_sorted.sam| samtools view -Sb - > tests/test_data/test_sorted.bam cat debian/missing-sources/control.sam| samtools view -Sb - > pyranges/example_data/control.bam samtools index tests/test_data/test_sorted.bam tests/test_data/test_sorted.bam.bai samtools index pyranges/example_data/control.bam pyranges/example_data/control.bam.bai make[1]: Leaving directory '/build/pyranges-0.0.111+ds' dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:307: cp -av /build/pyranges-0.0.111+ds/tests/*.bed /build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/tests && cp -av /build/pyranges-0.0.111+ds/tests/test_data /build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/tests && cp -av /build/pyranges-0.0.111+ds/tests/data /build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/tests && cp -av /build/pyranges-0.0.111+ds/pyranges/example_data /build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/pyranges '/build/pyranges-0.0.111+ds/tests/chip_10.bed' -> '/build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/tests/chip_10.bed' '/build/pyranges-0.0.111+ds/tests/f1.bed' -> '/build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/tests/f1.bed' '/build/pyranges-0.0.111+ds/tests/f2.bed' -> '/build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/tests/f2.bed' '/build/pyranges-0.0.111+ds/tests/test_data' -> '/build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/tests/test_data' '/build/pyranges-0.0.111+ds/tests/test_data/ensembl.gtf' -> '/build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/tests/test_data/ensembl.gtf' '/build/pyranges-0.0.111+ds/tests/test_data/gencode.gff3' -> '/build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/tests/test_data/gencode.gff3' '/build/pyranges-0.0.111+ds/tests/test_data/ucsc_df_to_parse.txt' -> '/build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/tests/test_data/ucsc_df_to_parse.txt' '/build/pyranges-0.0.111+ds/tests/test_data/test_sorted.bam' -> '/build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/tests/test_data/test_sorted.bam' '/build/pyranges-0.0.111+ds/tests/test_data/test_sorted.bam.bai' -> '/build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/tests/test_data/test_sorted.bam.bai' '/build/pyranges-0.0.111+ds/tests/data' -> '/build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/tests/data' '/build/pyranges-0.0.111+ds/tests/data/test_data.py' -> '/build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/tests/data/test_data.py' '/build/pyranges-0.0.111+ds/pyranges/example_data/exons.bed' -> '/build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/exons.bed' '/build/pyranges-0.0.111+ds/pyranges/example_data/ensembl.gtf' -> '/build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/ensembl.gtf' '/build/pyranges-0.0.111+ds/pyranges/example_data/ucsc_human.bed.gz' -> '/build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/ucsc_human.bed.gz' '/build/pyranges-0.0.111+ds/pyranges/example_data/chipseq_background.bed' -> '/build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/chipseq_background.bed' '/build/pyranges-0.0.111+ds/pyranges/example_data/f2.bed' -> '/build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/f2.bed' '/build/pyranges-0.0.111+ds/pyranges/example_data/bw.bw' -> '/build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/bw.bw' '/build/pyranges-0.0.111+ds/pyranges/example_data/f1.bed' -> '/build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/f1.bed' '/build/pyranges-0.0.111+ds/pyranges/example_data/cpg.bed' -> '/build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/cpg.bed' '/build/pyranges-0.0.111+ds/pyranges/example_data/lamina.bed' -> '/build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/lamina.bed' '/build/pyranges-0.0.111+ds/pyranges/example_data/gencode_human.gtf.gz' -> '/build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/gencode_human.gtf.gz' '/build/pyranges-0.0.111+ds/pyranges/example_data/chipseq.bed' -> '/build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/chipseq.bed' '/build/pyranges-0.0.111+ds/pyranges/example_data/aorta.bed' -> '/build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/aorta.bed' '/build/pyranges-0.0.111+ds/pyranges/example_data/ensembl_human.gtf.gz' -> '/build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/ensembl_human.gtf.gz' '/build/pyranges-0.0.111+ds/pyranges/example_data/chromsizes.bed' -> '/build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/chromsizes.bed' '/build/pyranges-0.0.111+ds/pyranges/example_data/aorta2.bed' -> '/build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/aorta2.bed' '/build/pyranges-0.0.111+ds/pyranges/example_data/control.bam' -> '/build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/control.bam' '/build/pyranges-0.0.111+ds/pyranges/example_data/control.bam.bai' -> '/build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/pyranges/example_data/control.bam.bai' I: pybuild base:240: cd /build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build; python3.11 -m pytest -n 15 ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack rootdir: /build/pyranges-0.0.111+ds plugins: xdist-3.1.0, hypothesis-6.67.1 gw0 I / gw1 I / gw2 I / gw3 I / gw4 I / gw5 I / gw6 I / gw7 I / gw8 I / gw9 I / gw10 I / gw11 I / gw12 I / gw13 I / gw14 I gw0 [531] / gw1 [531] / gw2 [531] / gw3 [531] / gw4 [531] / gw5 [531] / gw6 [531] / gw7 [531] / gw8 [531] / gw9 [531] / gw10 [531] / gw11 [531] / gw12 [531] / gw13 [531] / gw14 [531] ........................................................................ 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[100%] =============================== warnings summary =============================== tests/conftest.py:83 /build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/tests/conftest.py:83: DeprecationWarning: invalid escape sequence '\s' sep="\s+", .pybuild/cpython3_3.11_pyranges/build/tests/test_binary.py: 18000 warnings /build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/tests/test_binary.py:349: FutureWarning: In a future version of pandas all arguments of DataFrame.drop except for the argument 'labels' will be keyword-only. bedtools_df = bedtools_df.drop("Chromosome2", 1) .pybuild/cpython3_3.11_pyranges/build/tests/test_binary.py: 18000 warnings /build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/tests/test_binary.py:544: FutureWarning: In a future version of pandas all arguments of DataFrame.drop except for the argument 'labels' will be keyword-only. bedtools_df = bedtools_df.drop("Chromosome2", 1) .pybuild/cpython3_3.11_pyranges/build/tests/test_binary.py: 12077 warnings /build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/pyranges/pyranges.py:2503: FutureWarning: is_monotonic is deprecated and will be removed in a future version. Use is_monotonic_increasing instead. if not result.__IX__.is_monotonic: .pybuild/cpython3_3.11_pyranges/build/tests/test_concat.py::test_concat_stranded_unstranded .pybuild/cpython3_3.11_pyranges/build/tests/test_concat.py::test_concat_unstranded_stranded /build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/pyranges/methods/concat.py:47: DeprecationWarning: In a future version, `df.iloc[:, i] = newvals` will attempt to set the values inplace instead of always setting a new array. To retain the old behavior, use either `df[df.columns[i]] = newvals` or, if columns are non-unique, `df.isetitem(i, newvals)` v.loc[:, "Strand"] = type_v.cat.add_categories(["."]) .pybuild/cpython3_3.11_pyranges/build/tests/test_count_overlaps.py::test_strand_vs_strand_same .pybuild/cpython3_3.11_pyranges/build/tests/test_count_overlaps.py::test_strand_vs_strand_same .pybuild/cpython3_3.11_pyranges/build/tests/test_count_overlaps.py::test_strand_vs_strand_same .pybuild/cpython3_3.11_pyranges/build/tests/test_count_overlaps.py::test_strand_vs_strand_same .pybuild/cpython3_3.11_pyranges/build/tests/test_count_overlaps.py::test_strand_vs_strand_same .pybuild/cpython3_3.11_pyranges/build/tests/test_count_overlaps.py::test_strand_vs_strand_same /build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/pyranges/multioverlap.py:155: DeprecationWarning: In a future version, `df.iloc[:, i] = newvals` will attempt to set the values inplace instead of always setting a new array. To retain the old behavior, use either `df[df.columns[i]] = newvals` or, if columns are non-unique, `df.isetitem(i, newvals)` df.loc[:, names] = df[names].astype(np.int32) .pybuild/cpython3_3.11_pyranges/build/tests/test_genomicfeatures.py: 119 warnings /build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/tests/test_genomicfeatures.py:40: DeprecationWarning: In a future version, `df.iloc[:, i] = newvals` will attempt to set the values inplace instead of always setting a new array. To retain the old behavior, use either `df[df.columns[i]] = newvals` or, if columns are non-unique, `df.isetitem(i, newvals)` x.loc[:, "Start"] = x.Start.astype(int) .pybuild/cpython3_3.11_pyranges/build/tests/test_unary.py: 2000 warnings /build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/tests/test_unary.py:119: FutureWarning: The squeeze argument has been deprecated and will be removed in a future version. Append .squeeze("columns") to the call to squeeze. bedtools_df = pd.read_csv( .pybuild/cpython3_3.11_pyranges/build/tests/test_unary.py: 2000 warnings /build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/tests/test_unary.py:193: DeprecationWarning: In a future version, `df.iloc[:, i] = newvals` will attempt to set the values inplace instead of always setting a new array. To retain the old behavior, use either `df[df.columns[i]] = newvals` or, if columns are non-unique, `df.isetitem(i, newvals)` expected.loc[:, "Cluster"] = expected.Cluster.astype(np.int32) .pybuild/cpython3_3.11_pyranges/build/tests/test_unary.py: 1000 warnings /build/pyranges-0.0.111+ds/.pybuild/cpython3_3.11_pyranges/build/tests/test_unary.py:251: FutureWarning: The squeeze argument has been deprecated and will be removed in a future version. Append .squeeze("columns") to the call to squeeze. bedtools_df = pd.read_csv( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =============== 531 passed, 53205 warnings in 6446.19s (1:47:26) =============== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-pyranges/ -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/pyranges-0.0.111+ds/debian/python3-pyranges /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( debian/rules override_dh_install make[1]: Entering directory '/build/pyranges-0.0.111+ds' dh_install find debian/ -name *.bam* | xargs rm -rf find debian/ -name 'hi' | xargs rm -rf find debian/ -name '.hypothesis' | xargs rm -rf make[1]: Leaving directory '/build/pyranges-0.0.111+ds' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pyranges' in '../python3-pyranges_0.0.111+ds-4_all.deb'. dpkg-genbuildinfo --build=binary -O../pyranges_0.0.111+ds-4_amd64.buildinfo dpkg-genchanges --build=binary -O../pyranges_0.0.111+ds-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from pyranges-0.0.111+ds/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1609083 and its subdirectories I: Current time: Wed May 10 17:04:34 -12 2023 I: pbuilder-time-stamp: 1683781474 Thu May 11 05:04:34 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Thu May 11 05:04:34 UTC 2023 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Thu May 11 07:53:20 UTC 2023 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Thu May 11 07:53:20 UTC 2023 I: pyranges_0.0.111+ds-4_amd64.changes: Format: 1.8 Date: Sat, 14 Jan 2023 16:32:08 +0100 Source: pyranges Binary: python3-pyranges Architecture: all Version: 0.0.111+ds-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: python3-pyranges - 2D representation of genomic intervals and their annotations Closes: 1028852 Changes: pyranges (0.0.111+ds-4) unstable; urgency=medium . * Team upload. * Adapt to numpy 1.24 Closes: #1028852 * Standards-Version: 4.6.2 (routine-update) * No tab in license text (routine-update) Checksums-Sha1: 230c713a827f61a27eb32d91352de9e9f37f8674 6920 pyranges_0.0.111+ds-4_amd64.buildinfo 21a761bba211007b6a145b6c750aff1dba5bce99 437908 python3-pyranges_0.0.111+ds-4_all.deb Checksums-Sha256: a343d35ff991ca979c51984c308692d26ca8248156a1fd4bc8540dce5ea6e77a 6920 pyranges_0.0.111+ds-4_amd64.buildinfo 23fcd404b490ae34b82b19ab3efd5c55b2dc42e58e43f7c68e5adc7e4388a677 437908 python3-pyranges_0.0.111+ds-4_all.deb Files: 72683e6a6685f5d4ffa9018186d1fe6a 6920 python optional pyranges_0.0.111+ds-4_amd64.buildinfo 1a0857119115f01ef5c09246fed3992f 437908 python optional python3-pyranges_0.0.111+ds-4_all.deb Thu May 11 07:53:23 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.eFurzAYd/pyranges_0.0.111+ds-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.eFurzAYd/pyranges_0.0.111+ds-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.eFurzAYd/pyranges_0.0.111+ds-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.eFurzAYd/b1/pyranges_0.0.111+ds-4_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.eFurzAYd/b2/pyranges_0.0.111+ds-4_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.359s) 0.359s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.023s) 0.023s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Thu May 11 07:53:24 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Thu May 11 07:53:24 UTC 2023 I: pyranges from bookworm built successfully and reproducibly on amd64. Thu May 11 07:53:25 UTC 2023 I: Submitting .buildinfo files to external archives: Thu May 11 07:53:25 UTC 2023 I: Submitting 8.0K b1/pyranges_0.0.111+ds-4_amd64.buildinfo.asc Thu May 11 07:53:26 UTC 2023 I: Submitting 8.0K b2/pyranges_0.0.111+ds-4_amd64.buildinfo.asc Thu May 11 07:53:28 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu May 11 07:53:28 UTC 2023 I: Done submitting .buildinfo files. Thu May 11 07:53:28 UTC 2023 I: Removing signed pyranges_0.0.111+ds-4_amd64.buildinfo.asc files: removed './b1/pyranges_0.0.111+ds-4_amd64.buildinfo.asc' removed './b2/pyranges_0.0.111+ds-4_amd64.buildinfo.asc'