Thu Jan 11 06:24:51 UTC 2024 I: starting to build pymol/bookworm/amd64 on jenkins on '2024-01-11 06:24' Thu Jan 11 06:24:51 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_23/9252/console.log Thu Jan 11 06:24:51 UTC 2024 I: Downloading source for bookworm/pymol=2.5.0+dfsg-1 --2024-01-11 06:24:51-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/pymol/pymol_2.5.0%2bdfsg-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2293 (2.2K) [text/prs.lines.tag] Saving to: ‘pymol_2.5.0+dfsg-1.dsc’ 0K .. 100% 336M=0s 2024-01-11 06:24:51 (336 MB/s) - ‘pymol_2.5.0+dfsg-1.dsc’ saved [2293/2293] Thu Jan 11 06:24:51 UTC 2024 I: pymol_2.5.0+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pymol Binary: pymol, python3-pymol, pymol-data Architecture: any all Version: 2.5.0+dfsg-1 Maintainer: Debichem Team Uploaders: Michael Banck Homepage: https://www.pymol.org Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/debichem-team/pymol Vcs-Git: https://salsa.debian.org/debichem-team/pymol.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, freeglut3-dev, libfreetype6-dev, libglew-dev, libglm-dev, libnetcdf-dev, libpng-dev, python3-all, python3-all-dev, python3-numpy, python3-opengl, python3-pyqt5, python3-pyqt5.qtopengl, texlive-latex-base, libxml2-dev Package-List: pymol deb science optional arch=all pymol-data deb science optional arch=all python3-pymol deb python optional arch=any Checksums-Sha1: 8e75b08a9161b4f79a1cbaddd1d04955fcc92d8d 6897124 pymol_2.5.0+dfsg.orig.tar.xz 4305ae91458a833d11147c8dc4279454ace90fd7 57296 pymol_2.5.0+dfsg-1.debian.tar.xz Checksums-Sha256: e59bd206c8019e8aa44256985e6ff18d99aa2fca71aa939a793a58abda785c3e 6897124 pymol_2.5.0+dfsg.orig.tar.xz 2fed3bc4aed184453cb6fd939acb0072ba2fbd6724a92171e8ae2b18c33371f6 57296 pymol_2.5.0+dfsg-1.debian.tar.xz Files: 5e0fa006abfb69e30161c875a7bb5623 6897124 pymol_2.5.0+dfsg.orig.tar.xz bb05288432909c278ed0b571055b080e 57296 pymol_2.5.0+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmG6FD0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH76hAAgees6vVKDVs5L6firz453XTerXf+meAT bflxCCkPX4dO1iQKm8uZI5BjUPCn3ENmQgGBd5pu7F7X7C4o1Qc++P8fAjWt1bta maK5sFFXCQ+jSHnUQcWPzTw8Td2KjR8qjMMB7gZAg8yGfw9cqPXzxx20ehC9HlKv 7kWh0QEvLhUlNNX+HtG7SlyvgFSQcOLFqd8E1jpamreg9ftxhCUyBCpIHAiMNidd PA2n+jsZkW9djQ6AcmlGm3/+pnUx2uIasrJMUUUeNNwHZQt5hZ6EP0Fd4eTYgWjK ya38gDyr2e3aV+P/qdIZYMM6+rpTwc/xOtbfHO2XcqCPIQ8oamhfmXTWyjopbiAv ZMZ5sNe8gAACJ1+2g/BTlvEoGNRCPrQw1IyZrGnB1oDOLoFgFJuLk5ebMuGnrc/b T3EeJ0YzhYge/jH4iIYFOp2AiAZoofI7zHEyVxv8JFhYLQ/ltHiUv0X7Fy2XbccL WKx/DI+raU4RDupN98DGRWMi6uvF03wRxcm588kW3AND8W1yzhHIatcqH+aDYgWC /8o9F1wTQ6Rwcl2mPLv17KpMVLPlr69fjUDZT54iQ/DbJXN/dOBgKwIigj9SluLc 934Om+QJRpz+pFXcwK6jNu6zff5Vm3/C6uscSIO+81M9K6jdUHlQ5Gd1Lr5/ThGZ moXSD0UrUUU= =oA+l -----END PGP SIGNATURE----- Thu Jan 11 06:24:51 UTC 2024 I: Checking whether the package is not for us Thu Jan 11 06:24:51 UTC 2024 I: Starting 1st build on remote node ionos11-amd64.debian.net. Thu Jan 11 06:24:51 UTC 2024 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Thu Jan 11 06:32:44 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jan 10 18:24:54 -12 2024 I: pbuilder-time-stamp: 1704954294 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pymol_2.5.0+dfsg-1.dsc] I: copying [./pymol_2.5.0+dfsg.orig.tar.xz] I: copying [./pymol_2.5.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Dec 15 16:13:49 2021 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pymol_2.5.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting pymol in pymol-2.5.0+dfsg dpkg-source: info: unpacking pymol_2.5.0+dfsg.orig.tar.xz dpkg-source: info: unpacking pymol_2.5.0+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 03_povray.patch dpkg-source: info: applying 22_fix_pymol_import.patch dpkg-source: info: applying 27_fix_pymol_path_in_setup.patch dpkg-source: info: applying 28_no_data_install_in_python_path.patch dpkg-source: info: applying 31_fix_format-security.patch dpkg-source: info: applying 32_fix_spelling_lintian_warnings.patch dpkg-source: info: applying 33_fix_relative_paths_in_example_scripts.patch dpkg-source: info: applying 34_fix_examples_add_fetch_instead_of_load.patch dpkg-source: info: applying 40_mstop_movies.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1314103/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='44f32c5083f44c6089a645e4c5f07ca0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1314103' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.c3oqM1dM/pbuilderrc_hHLk --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.c3oqM1dM/b1 --logfile b1/build.log pymol_2.5.0+dfsg-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 6.1.0-17-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 23 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 23 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 23 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 2023 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 23 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 23 2023 more -rwsr-xr-x 1 root root 59704 Mar 23 2023 mount -rwxr-xr-x 1 root root 18744 Mar 23 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Jul 28 23:46 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 23 2023 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar -rwxr-xr-x 1 root root 14520 Jul 28 23:46 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 23 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 23 2023 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 23 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/1314103/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, freeglut3-dev, libfreetype6-dev, libglew-dev, libglm-dev, libnetcdf-dev, libpng-dev, python3-all, python3-all-dev, python3-numpy, python3-opengl, python3-pyqt5, python3-pyqt5.qtopengl, texlive-latex-base, libxml2-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18148 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on freeglut3-dev; however: Package freeglut3-dev is not installed. pbuilder-satisfydepends-dummy depends on libfreetype6-dev; however: Package libfreetype6-dev is not installed. pbuilder-satisfydepends-dummy depends on libglew-dev; however: Package libglew-dev is not installed. pbuilder-satisfydepends-dummy depends on libglm-dev; however: Package libglm-dev is not installed. pbuilder-satisfydepends-dummy depends on libnetcdf-dev; however: Package libnetcdf-dev is not installed. pbuilder-satisfydepends-dummy depends on libpng-dev; however: Package libpng-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-opengl; however: Package python3-opengl is not installed. pbuilder-satisfydepends-dummy depends on python3-pyqt5; however: Package python3-pyqt5 is not installed. pbuilder-satisfydepends-dummy depends on python3-pyqt5.qtopengl; however: Package python3-pyqt5.qtopengl is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on libxml2-dev; however: Package libxml2-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} freeglut3-dev{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas3{a} libbrotli-dev{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcups2{a} libcurl3-gnutls{a} libcurl4{a} libcurl4-gnutls-dev{a} libdbus-1-3{a} libdebhelper-perl{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libelf1{a} libevdev2{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype-dev{a} libfreetype6{a} libfreetype6-dev{a} libgbm1{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dev{a} libgl1-mesa-dri{a} libglapi-mesa{a} libgles-dev{a} libgles1{a} libgles2{a} libglew-dev{a} libglew2.2{a} libglib2.0-0{a} libglm-dev{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglut-dev{a} libglut3.12{a} libglvnd-core-dev{a} libglvnd-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgudev-1.0-0{a} libharfbuzz0b{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libice-dev{a} libice6{a} libicu-dev{a} libicu72{a} libinput-bin{a} libinput10{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libkpathsea6{a} liblapack3{a} libldap-2.5-0{a} libllvm15{a} libmagic-mgc{a} libmagic1{a} libmd4c0{a} libmtdev1{a} libnetcdf-dev{a} libnetcdf19{a} libnghttp2-14{a} libopengl-dev{a} libopengl0{a} libpaper-utils{a} libpaper1{a} libpciaccess0{a} libpcre2-16-0{a} libpipeline1{a} libpixman-1-0{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libptexenc1{a} libpthread-stubs0-dev{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqt5core5a{a} libqt5dbus5{a} libqt5designer5{a} libqt5gui5{a} libqt5help5{a} libqt5network5{a} libqt5opengl5{a} libqt5printsupport5{a} libqt5sql5{a} libqt5test5{a} libqt5widgets5{a} libqt5xml5{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsm-dev{a} libsm6{a} libssh2-1{a} libssl-dev{a} libsub-override-perl{a} libsynctex2{a} libsz2{a} libteckit0{a} libtexlua53-5{a} libtexluajit2{a} libtool{a} libuchardet0{a} libwacom-common{a} libwacom9{a} libwayland-client0{a} libwayland-server0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes3{a} libxi6{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxml2-dev{a} libxmu6{a} libxpm4{a} libxrender1{a} libxshmfence1{a} libxt-dev{a} libxt6{a} libxxf86vm1{a} libz3-4{a} libzzip-0-13{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-opengl{a} python3-pkg-resources{a} python3-pyqt5{a} python3-pyqt5.qtopengl{a} python3-pyqt5.sip{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} shared-mime-info{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-latex-base{a} ucf{a} x11-common{a} x11proto-dev{a} xdg-utils{a} xkb-data{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl dbus dvisvgm javascript-common libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libqt5sql5-ibase libqt5sql5-mysql libqt5sql5-odbc libqt5sql5-psql libqt5sql5-sqlite libqt5sql5-tds libqt5svg5 libsasl2-modules libx11-protocol-perl lmodern lynx pkg-config pkgconf publicsuffix qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 252 newly installed, 0 to remove and 0 not upgraded. Need to get 177 MB of archives. After unpacking 694 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 11 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 33 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 35 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.3~deb12u1 [687 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130+deb12u1 [104 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5 [399 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 fontconfig amd64 2.14.1-4 [449 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 fonts-lmodern all 2.005-1 [4540 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libglvnd0 amd64 1.6.0-1 [51.8 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2+deb12u2 [292 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2+deb12u2 [760 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libdrm-common all 2.4.114-1 [7112 B] Get: 62 http://deb.debian.org/debian bookworm/main amd64 libdrm2 amd64 2.4.114-1+b1 [37.5 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 libglapi-mesa amd64 22.3.6-1+deb12u1 [35.7 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 libx11-xcb1 amd64 2:1.8.4-2+deb12u2 [192 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 libxcb-dri2-0 amd64 1.15-1 [107 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 libxcb-dri3-0 amd64 1.15-1 [107 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 libxcb-glx0 amd64 1.15-1 [122 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 libxcb-present0 amd64 1.15-1 [105 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 libxcb-randr0 amd64 1.15-1 [117 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 libxcb-sync1 amd64 1.15-1 [109 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 libxcb-xfixes0 amd64 1.15-1 [109 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 libxfixes3 amd64 1:6.0.0-2 [22.7 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get: 76 http://deb.debian.org/debian bookworm/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 libdrm-amdgpu1 amd64 2.4.114-1+b1 [20.9 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 libpciaccess0 amd64 0.17-2 [51.4 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 libdrm-intel1 amd64 2.4.114-1+b1 [64.0 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 libdrm-nouveau2 amd64 2.4.114-1+b1 [19.1 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 libdrm-radeon1 amd64 2.4.114-1+b1 [21.8 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 libz3-4 amd64 4.8.12-3.1 [7216 kB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 libllvm15 amd64 1:15.0.6-4+b1 [23.1 MB] Get: 85 http://deb.debian.org/debian bookworm/main amd64 libsensors-config all 1:3.6.0-7.1 [14.3 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 libsensors5 amd64 1:3.6.0-7.1 [34.2 kB] Get: 87 http://deb.debian.org/debian bookworm/main amd64 libgl1-mesa-dri amd64 22.3.6-1+deb12u1 [7239 kB] Get: 88 http://deb.debian.org/debian bookworm/main amd64 libglx-mesa0 amd64 22.3.6-1+deb12u1 [147 kB] Get: 89 http://deb.debian.org/debian bookworm/main amd64 libglx0 amd64 1.6.0-1 [34.4 kB] Get: 90 http://deb.debian.org/debian bookworm/main amd64 libgl1 amd64 1.6.0-1 [88.4 kB] Get: 91 http://deb.debian.org/debian bookworm/main amd64 libxi6 amd64 2:1.8-1+b1 [84.2 kB] Get: 92 http://deb.debian.org/debian bookworm/main amd64 libglut3.12 amd64 3.4.0-1 [139 kB] Get: 93 http://deb.debian.org/debian bookworm/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 94 http://deb.debian.org/debian bookworm/main amd64 x11proto-dev all 2022.1-1 [599 kB] Get: 95 http://deb.debian.org/debian bookworm/main amd64 libxau-dev amd64 1:1.0.9-1 [22.9 kB] Get: 96 http://deb.debian.org/debian bookworm/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB] Get: 97 http://deb.debian.org/debian bookworm/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 98 http://deb.debian.org/debian bookworm/main amd64 libpthread-stubs0-dev amd64 0.4-1 [5344 B] Get: 99 http://deb.debian.org/debian bookworm/main amd64 libxcb1-dev amd64 1.15-1 [181 kB] Get: 100 http://deb.debian.org/debian bookworm/main amd64 libx11-dev amd64 2:1.8.4-2+deb12u2 [837 kB] Get: 101 http://deb.debian.org/debian bookworm/main amd64 libglx-dev amd64 1.6.0-1 [15.3 kB] Get: 102 http://deb.debian.org/debian bookworm/main amd64 libgl-dev amd64 1.6.0-1 [100 kB] Get: 103 http://deb.debian.org/debian bookworm/main amd64 libglvnd-core-dev amd64 1.6.0-1 [12.9 kB] Get: 104 http://deb.debian.org/debian bookworm/main amd64 libwayland-server0 amd64 1.21.0-1 [35.9 kB] Get: 105 http://deb.debian.org/debian bookworm/main amd64 libgbm1 amd64 22.3.6-1+deb12u1 [38.0 kB] Get: 106 http://deb.debian.org/debian bookworm/main amd64 libwayland-client0 amd64 1.21.0-1 [28.3 kB] Get: 107 http://deb.debian.org/debian bookworm/main amd64 libegl-mesa0 amd64 22.3.6-1+deb12u1 [114 kB] Get: 108 http://deb.debian.org/debian bookworm/main amd64 libegl1 amd64 1.6.0-1 [33.7 kB] Get: 109 http://deb.debian.org/debian bookworm/main amd64 libegl-dev amd64 1.6.0-1 [19.1 kB] Get: 110 http://deb.debian.org/debian bookworm/main amd64 libgles1 amd64 1.6.0-1 [11.7 kB] Get: 111 http://deb.debian.org/debian bookworm/main amd64 libgles2 amd64 1.6.0-1 [16.8 kB] Get: 112 http://deb.debian.org/debian bookworm/main amd64 libgles-dev amd64 1.6.0-1 [50.4 kB] Get: 113 http://deb.debian.org/debian bookworm/main amd64 libopengl0 amd64 1.6.0-1 [30.6 kB] Get: 114 http://deb.debian.org/debian bookworm/main amd64 libopengl-dev amd64 1.6.0-1 [4936 B] Get: 115 http://deb.debian.org/debian bookworm/main amd64 libglvnd-dev amd64 1.6.0-1 [4692 B] Get: 116 http://deb.debian.org/debian bookworm/main amd64 libgl1-mesa-dev amd64 22.3.6-1+deb12u1 [14.5 kB] Get: 117 http://deb.debian.org/debian bookworm/main amd64 libglu1-mesa amd64 9.0.2-1.1 [178 kB] Get: 118 http://deb.debian.org/debian bookworm/main amd64 libglu1-mesa-dev amd64 9.0.2-1.1 [216 kB] Get: 119 http://deb.debian.org/debian bookworm/main amd64 libxext-dev amd64 2:1.3.4-1+b1 [107 kB] Get: 120 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 121 http://deb.debian.org/debian bookworm/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get: 122 http://deb.debian.org/debian bookworm/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 123 http://deb.debian.org/debian bookworm/main amd64 libxt6 amd64 1:1.2.1-1.1 [186 kB] Get: 124 http://deb.debian.org/debian bookworm/main amd64 libice-dev amd64 2:1.0.10-1 [67.1 kB] Get: 125 http://deb.debian.org/debian bookworm/main amd64 libsm-dev amd64 2:1.2.3-1 [38.0 kB] Get: 126 http://deb.debian.org/debian bookworm/main amd64 libxt-dev amd64 1:1.2.1-1.1 [405 kB] Get: 127 http://deb.debian.org/debian bookworm/main amd64 libglut-dev amd64 3.4.0-1 [163 kB] Get: 128 http://deb.debian.org/debian bookworm/main amd64 freeglut3-dev amd64 3.4.0-1 [53.1 kB] Get: 129 http://deb.debian.org/debian bookworm/main amd64 hdf5-helpers amd64 1.10.8+repack1-1 [27.9 kB] Get: 130 http://deb.debian.org/debian bookworm/main amd64 icu-devtools amd64 72.1-3 [206 kB] Get: 131 http://deb.debian.org/debian bookworm/main amd64 libaec0 amd64 1.0.6-1+b1 [21.1 kB] Get: 132 http://deb.debian.org/debian bookworm/main amd64 libsz2 amd64 1.0.6-1+b1 [7804 B] Get: 133 http://deb.debian.org/debian bookworm/main amd64 libaec-dev amd64 1.0.6-1+b1 [19.9 kB] Get: 134 http://deb.debian.org/debian bookworm/main amd64 libavahi-common-data amd64 0.8-10 [107 kB] Get: 135 http://deb.debian.org/debian bookworm/main amd64 libavahi-common3 amd64 0.8-10 [41.6 kB] Get: 136 http://deb.debian.org/debian bookworm/main amd64 libdbus-1-3 amd64 1.14.10-1~deb12u1 [201 kB] Get: 137 http://deb.debian.org/debian bookworm/main amd64 libavahi-client3 amd64 0.8-10 [45.5 kB] Get: 138 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get: 139 http://deb.debian.org/debian bookworm/main amd64 libbrotli-dev amd64 1.0.9-2+b6 [287 kB] Get: 140 http://deb.debian.org/debian bookworm/main amd64 libpixman-1-0 amd64 0.42.2-1 [546 kB] Get: 141 http://deb.debian.org/debian bookworm/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get: 142 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get: 143 http://deb.debian.org/debian bookworm/main amd64 libcairo2 amd64 1.16.0-7 [575 kB] Get: 144 http://deb.debian.org/debian bookworm/main amd64 libcups2 amd64 2.4.2-3+deb12u5 [245 kB] Get: 145 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get: 146 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get: 147 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get: 148 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1+deb12u1 [72.4 kB] Get: 149 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get: 150 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 151 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get: 152 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.88.1-10+deb12u4 [385 kB] Get: 153 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-10+deb12u4 [390 kB] Get: 154 http://deb.debian.org/debian bookworm/main amd64 libcurl4-gnutls-dev amd64 7.88.1-10+deb12u4 [485 kB] Get: 155 http://deb.debian.org/debian bookworm/main amd64 libdouble-conversion3 amd64 3.2.1-1 [41.5 kB] Get: 156 http://deb.debian.org/debian bookworm/main amd64 libevdev2 amd64 1.13.0+dfsg-1 [34.0 kB] Get: 157 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get: 158 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 159 http://deb.debian.org/debian bookworm/main amd64 libpng-dev amd64 1.6.39-2 [359 kB] Get: 160 http://deb.debian.org/debian bookworm/main amd64 libfreetype-dev amd64 2.12.1+dfsg-5 [567 kB] Get: 161 http://deb.debian.org/debian bookworm/main amd64 libfreetype6-dev amd64 2.12.1+dfsg-5 [46.4 kB] Get: 162 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 163 http://deb.debian.org/debian bookworm/main amd64 libglew2.2 amd64 2.2.0-4+b1 [175 kB] Get: 164 http://deb.debian.org/debian bookworm/main amd64 libglew-dev amd64 2.2.0-4+b1 [256 kB] Get: 165 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB] Get: 166 http://deb.debian.org/debian bookworm/main amd64 libglm-dev all 0.9.9.8+ds-6 [185 kB] Get: 167 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get: 168 http://deb.debian.org/debian bookworm/main amd64 libgudev-1.0-0 amd64 237-2 [15.1 kB] Get: 169 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get: 170 http://deb.debian.org/debian bookworm/main amd64 libhdf5-103-1 amd64 1.10.8+repack1-1 [1237 kB] Get: 171 http://deb.debian.org/debian bookworm/main amd64 libhdf5-cpp-103-1 amd64 1.10.8+repack1-1 [128 kB] Get: 172 http://deb.debian.org/debian bookworm/main amd64 libhdf5-fortran-102 amd64 1.10.8+repack1-1 [93.3 kB] Get: 173 http://deb.debian.org/debian bookworm/main amd64 libhdf5-hl-100 amd64 1.10.8+repack1-1 [67.8 kB] Get: 174 http://deb.debian.org/debian bookworm/main amd64 libhdf5-hl-fortran-100 amd64 1.10.8+repack1-1 [44.5 kB] Get: 175 http://deb.debian.org/debian bookworm/main amd64 libhdf5-hl-cpp-100 amd64 1.10.8+repack1-1 [25.5 kB] Get: 176 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get: 177 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-2 [290 kB] Get: 178 http://deb.debian.org/debian bookworm/main amd64 libjpeg-dev amd64 1:2.1.5-2 [71.8 kB] Get: 179 http://deb.debian.org/debian bookworm/main amd64 libssl-dev amd64 3.0.11-1~deb12u2 [2430 kB] Get: 180 http://deb.debian.org/debian bookworm/main amd64 libhdf5-dev amd64 1.10.8+repack1-1 [2615 kB] Get: 181 http://deb.debian.org/debian bookworm/main amd64 libicu-dev amd64 72.1-3 [10.3 MB] Get: 182 http://deb.debian.org/debian bookworm/main amd64 libwacom-common all 2.6.0-1 [58.4 kB] Get: 183 http://deb.debian.org/debian bookworm/main amd64 libwacom9 amd64 2.6.0-1 [21.5 kB] Get: 184 http://deb.debian.org/debian bookworm/main amd64 libinput-bin amd64 1.22.1-1 [23.2 kB] Get: 185 http://deb.debian.org/debian bookworm/main amd64 libmtdev1 amd64 1.1.6-1 [23.0 kB] Get: 186 http://deb.debian.org/debian bookworm/main amd64 libinput10 amd64 1.22.1-1 [125 kB] Get: 187 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 188 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 189 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 190 http://deb.debian.org/debian bookworm/main amd64 libkpathsea6 amd64 2022.20220321.62855-5.1+deb12u1 [152 kB] Get: 191 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get: 192 http://deb.debian.org/debian bookworm/main amd64 libmd4c0 amd64 0.4.8-1 [44.2 kB] Get: 193 http://deb.debian.org/debian bookworm/main amd64 libnetcdf19 amd64 1:4.9.0-3+b1 [476 kB] Get: 194 http://deb.debian.org/debian bookworm/main amd64 libxml2-dev amd64 2.9.14+dfsg-1.3~deb12u1 [782 kB] Get: 195 http://deb.debian.org/debian bookworm/main amd64 libnetcdf-dev amd64 1:4.9.0-3+b1 [113 kB] Get: 196 http://deb.debian.org/debian bookworm/main amd64 libpaper1 amd64 1.1.29 [12.5 kB] Get: 197 http://deb.debian.org/debian bookworm/main amd64 libpaper-utils amd64 1.1.29 [8868 B] Get: 198 http://deb.debian.org/debian bookworm/main amd64 libpcre2-16-0 amd64 10.42-1 [245 kB] Get: 199 http://deb.debian.org/debian bookworm/main amd64 libptexenc1 amd64 2022.20220321.62855-5.1+deb12u1 [43.7 kB] Get: 200 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6 [1988 kB] Get: 201 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6 [4738 kB] Get: 202 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get: 203 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.11.2-1+b1 [1068 B] Get: 204 http://deb.debian.org/debian bookworm/main amd64 shared-mime-info amd64 2.2-1 [729 kB] Get: 205 http://deb.debian.org/debian bookworm/main amd64 libqt5core5a amd64 5.15.8+dfsg-11 [1809 kB] Get: 206 http://deb.debian.org/debian bookworm/main amd64 libqt5dbus5 amd64 5.15.8+dfsg-11 [211 kB] Get: 207 http://deb.debian.org/debian bookworm/main amd64 libqt5network5 amd64 5.15.8+dfsg-11 [674 kB] Get: 208 http://deb.debian.org/debian bookworm/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [27.4 kB] Get: 209 http://deb.debian.org/debian bookworm/main amd64 libxcb-util1 amd64 0.4.0-1+b1 [23.2 kB] Get: 210 http://deb.debian.org/debian bookworm/main amd64 libxcb-image0 amd64 0.4.0-2 [22.9 kB] Get: 211 http://deb.debian.org/debian bookworm/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b2 [16.4 kB] Get: 212 http://deb.debian.org/debian bookworm/main amd64 libxcb-render-util0 amd64 0.3.9-1+b1 [18.3 kB] Get: 213 http://deb.debian.org/debian bookworm/main amd64 libxcb-shape0 amd64 1.15-1 [106 kB] Get: 214 http://deb.debian.org/debian bookworm/main amd64 libxcb-xinerama0 amd64 1.15-1 [105 kB] Get: 215 http://deb.debian.org/debian bookworm/main amd64 libxcb-xinput0 amd64 1.15-1 [130 kB] Get: 216 http://deb.debian.org/debian bookworm/main amd64 libxcb-xkb1 amd64 1.15-1 [129 kB] Get: 217 http://deb.debian.org/debian bookworm/main amd64 xkb-data all 2.35.1-1 [764 kB] Get: 218 http://deb.debian.org/debian bookworm/main amd64 libxkbcommon0 amd64 1.5.0-1 [106 kB] Get: 219 http://deb.debian.org/debian bookworm/main amd64 libxkbcommon-x11-0 amd64 1.5.0-1 [15.6 kB] Get: 220 http://deb.debian.org/debian bookworm/main amd64 libqt5gui5 amd64 5.15.8+dfsg-11 [3408 kB] Get: 221 http://deb.debian.org/debian bookworm/main amd64 libqt5widgets5 amd64 5.15.8+dfsg-11 [2383 kB] Get: 222 http://deb.debian.org/debian bookworm/main amd64 libqt5xml5 amd64 5.15.8+dfsg-11 [122 kB] Get: 223 http://deb.debian.org/debian bookworm/main amd64 libqt5designer5 amd64 5.15.8-2 [2748 kB] Get: 224 http://deb.debian.org/debian bookworm/main amd64 libqt5sql5 amd64 5.15.8+dfsg-11 [122 kB] Get: 225 http://deb.debian.org/debian bookworm/main amd64 libqt5help5 amd64 5.15.8-2 [149 kB] Get: 226 http://deb.debian.org/debian bookworm/main amd64 libqt5opengl5 amd64 5.15.8+dfsg-11 [148 kB] Get: 227 http://deb.debian.org/debian bookworm/main amd64 libqt5printsupport5 amd64 5.15.8+dfsg-11 [202 kB] Get: 228 http://deb.debian.org/debian bookworm/main amd64 libqt5test5 amd64 5.15.8+dfsg-11 [146 kB] Get: 229 http://deb.debian.org/debian bookworm/main amd64 libsynctex2 amd64 2022.20220321.62855-5.1+deb12u1 [59.8 kB] Get: 230 http://deb.debian.org/debian bookworm/main amd64 libteckit0 amd64 2.5.11+ds1-1+b1 [335 kB] Get: 231 http://deb.debian.org/debian bookworm/main amd64 libtexlua53-5 amd64 2022.20220321.62855-5.1+deb12u1 [111 kB] Get: 232 http://deb.debian.org/debian bookworm/main amd64 libtexluajit2 amd64 2022.20220321.62855-5.1+deb12u1 [246 kB] Get: 233 http://deb.debian.org/debian bookworm/main amd64 libxmu6 amd64 2:1.1.3-3 [60.1 kB] Get: 234 http://deb.debian.org/debian bookworm/main amd64 libxpm4 amd64 1:3.5.12-1.1+deb12u1 [48.6 kB] Get: 235 http://deb.debian.org/debian bookworm/main amd64 libxaw7 amd64 2:1.0.14-1 [201 kB] Get: 236 http://deb.debian.org/debian bookworm/main amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [58.3 kB] Get: 237 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get: 238 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6 [615 kB] Get: 239 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get: 240 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.11.2-1+b1 [1072 B] Get: 241 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 242 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get: 243 http://deb.debian.org/debian bookworm/main amd64 python3-opengl all 3.1.6+dfsg-3 [605 kB] Get: 244 http://deb.debian.org/debian bookworm/main amd64 python3-pyqt5.sip amd64 12.11.1-1 [56.4 kB] Get: 245 http://deb.debian.org/debian bookworm/main amd64 python3-pyqt5 amd64 5.15.9+dfsg-1 [2489 kB] Get: 246 http://deb.debian.org/debian bookworm/main amd64 python3-pyqt5.qtopengl amd64 5.15.9+dfsg-1 [206 kB] Get: 247 http://deb.debian.org/debian bookworm/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get: 248 http://deb.debian.org/debian bookworm/main amd64 tex-common all 6.18 [32.5 kB] Get: 249 http://deb.debian.org/debian bookworm/main amd64 texlive-binaries amd64 2022.20220321.62855-5.1+deb12u1 [10.5 MB] Get: 250 http://deb.debian.org/debian bookworm/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 251 http://deb.debian.org/debian bookworm/main amd64 texlive-base all 2022.20230122-3 [21.9 MB] Get: 252 http://deb.debian.org/debian bookworm/main amd64 texlive-latex-base all 2022.20230122-3 [1182 kB] Fetched 177 MB in 10s (18.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18148 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18464 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_amd64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../3-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_amd64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18898 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../003-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../006-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../007-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pymol-2.5.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pymol_2.5.0+dfsg-1_source.changes dpkg-buildpackage: info: source package pymol dpkg-buildpackage: info: source version 2.5.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py clean /build/reproducible-path/pymol-2.5.0+dfsg/setup.py:9: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension running clean removing '/build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/pymol-2.5.0+dfsg' rm -f -r build test/tmp test/cmp generated dh_clean debian/pymol-ref-card.* \ Rules.make create_shadertext.pyc make[1]: Leaving directory '/build/reproducible-path/pymol-2.5.0+dfsg' debian/rules binary dh binary --with python3 --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config /build/reproducible-path/pymol-2.5.0+dfsg/setup.py:9: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build /build/reproducible-path/pymol-2.5.0+dfsg/setup.py:9: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension running build running build_py creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol2 copying modules/pymol2/cmd2.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol2 copying modules/pymol2/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol2 creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/povray.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/xwin.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/xray.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/wizarding.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/viewing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/vfont.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/util.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/shortcut_manager.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/shortcut_dict.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/shortcut.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/setting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/seqalign.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/selector.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/selecting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/save_shortcut.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/rpc.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/querying.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/pymolhttpd.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/preset.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/parsing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/parser.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/mpeg_encode.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/moving.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/movie.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/morphing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/monitoring.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/menu.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/locking.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/lazyio.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/keywords.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/keyboard.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/invocation.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/internal.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/importing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/helping.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/headering.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/gui.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/fitting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/feedingback.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/externing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/exporting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/experimenting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/editor.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/editing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/diagnosing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/creating.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/controlling.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/constants_palette.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/constants.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/computing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/completing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/commanding.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/colorramping.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/colorprinting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/cmd.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/checking.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/cgo.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/callback.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/api.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/_gui.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol copying modules/pymol/__main__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/toggle.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/stereodemo.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/security.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/sculpting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/renaming.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/pseudoatom.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/pair_fit.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/openvr.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/nucmutagenesis.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/mutagenesis.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/message.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/measurement.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/label.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/filter.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/dragging.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/distance.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/density.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/demo.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/command.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/cleanup.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/charge.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/box.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/benchmark.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/appearance.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/annotation.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard copying modules/pymol/wizard/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/stereochemistry copying modules/pymol/stereochemistry/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/stereochemistry creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/plugins copying modules/pymol/plugins/repository.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/plugins copying modules/pymol/plugins/managergui_qt.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/plugins copying modules/pymol/plugins/managergui.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/plugins copying modules/pymol/plugins/legacysupport.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/plugins copying modules/pymol/plugins/installation.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/plugins copying modules/pymol/plugins/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/plugins creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/Qt copying modules/pymol/Qt/utils.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/Qt copying modules/pymol/Qt/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/Qt creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk copying modules/pmg_tk/volume.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk copying modules/pmg_tk/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk copying modules/pmg_tk/TextEditor.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk copying modules/pmg_tk/Setting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk copying modules/pmg_tk/SetEditor.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk copying modules/pmg_tk/PyMOLMapLoad.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk copying modules/pmg_tk/PMGApp.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk copying modules/pmg_tk/Demo.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk copying modules/pmg_tk/ColorEditor.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/startup copying modules/pmg_tk/startup/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/startup creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/skins copying modules/pmg_tk/skins/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/skins creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/builder.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/ModalWindow.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/skins/normal creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/skins/demo copying modules/pmg_tk/skins/demo/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/skins/demo creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt copying modules/pmg_qt/volume.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt copying modules/pmg_qt/shortcut_menu_gui.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt copying modules/pmg_qt/pymol_qt_gui.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt copying modules/pmg_qt/pymol_gl_widget.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt copying modules/pmg_qt/properties_dialog.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt copying modules/pmg_qt/mimic_tk.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt copying modules/pmg_qt/mimic_pmg_tk.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt copying modules/pmg_qt/keymapping.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt copying modules/pmg_qt/file_dialogs.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt copying modules/pmg_qt/builder.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt copying modules/pmg_qt/advanced_settings_gui.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt copying modules/pmg_qt/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt copying modules/pmg_qt/TextEditor.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/python.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/pmlparser.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/pml.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/syntax creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/xyz.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/water_residues.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/water_amber.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/solvate.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/sdf.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/protein_residues.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/protein_mmff.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/protein_amber99.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/protein_amber.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/protein.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/place.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/pkl.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/pdb.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/neighbor.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/mol2.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/mol.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/models.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/mmd.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/mass.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/map.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/mae.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/lst.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/io.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/hetatm.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/gms.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/gamess1.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/dictdb.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/cpv.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/cif.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/charge.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/cc1.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/brick.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/bonds.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/bond_mmff.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/bond_amber.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/arc.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy copying modules/chempy/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/tinker copying modules/chempy/tinker/state.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/tinker copying modules/chempy/tinker/realtime.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/tinker copying modules/chempy/tinker/keyword.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/tinker copying modules/chempy/tinker/amber.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/tinker copying modules/chempy/tinker/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/tinker creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/mmtf copying modules/chempy/mmtf/io.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/mmtf copying modules/chempy/mmtf/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/mmtf creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/fragments copying modules/chempy/fragments/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/fragments creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/fast copying modules/chempy/fast/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/fast creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/champ copying modules/chempy/champ/formal_charges.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/champ copying modules/chempy/champ/assign.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/champ copying modules/chempy/champ/amber99.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/champ copying modules/chempy/champ/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/champ creating /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/bmin copying modules/chempy/bmin/util.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/bmin copying modules/chempy/bmin/state.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/bmin copying modules/chempy/bmin/realtime.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/bmin copying modules/chempy/bmin/commands.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/bmin copying modules/chempy/bmin/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/bmin copying modules/pmg_qt/forms/shortcut_menu.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/save_object.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/save_molecule.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/render.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/props.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/png.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/pluginmanager.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/pluginitem.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/movieexport.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_traj.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_mtz.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_map.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_mae.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_aln.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/help_shortcut.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/fetch.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/create_shortcut.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/colors.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/change_confirm.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/askpartial.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms running build_ext building 'pymol._cmd' extension creating build/temp.linux-x86_64-3.11 creating build/temp.linux-x86_64-3.11/build creating build/temp.linux-x86_64-3.11/build/generated creating build/temp.linux-x86_64-3.11/contrib creating build/temp.linux-x86_64-3.11/contrib/uiuc creating build/temp.linux-x86_64-3.11/contrib/uiuc/plugins creating build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin creating build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src creating build/temp.linux-x86_64-3.11/layer0 creating build/temp.linux-x86_64-3.11/layer1 creating build/temp.linux-x86_64-3.11/layer2 creating build/temp.linux-x86_64-3.11/layer3 creating build/temp.linux-x86_64-3.11/layer4 creating build/temp.linux-x86_64-3.11/layer5 creating build/temp.linux-x86_64-3.11/ov creating build/temp.linux-x86_64-3.11/ov/src x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD build/generated/ShaderText.cpp -o build/temp.linux-x86_64-3.11/build/generated/ShaderText.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:42: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'angular_momentum_expon': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 545 | for (i=0; ifd) != 3*n) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'open_namdbin_read': contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:78:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 78 | fread(&filen, sizeof(namdbin_int32), 1, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function 'void* open_fs4_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 79 | fread(&dataBegin, sizeof(int), 1, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 275 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 289 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_bonds_aux(void*, int*, int**, int**, float**)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 209 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 127 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 138 | fgets(line, LINESIZE, mol2->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'void* open_mol2_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 74 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 81 | fgets(line, LINESIZE, fd); // Read and ignore the mol_name | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 82 | fgets(line, LINESIZE, fd); // Read the molecule info | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 91 | fgets(line, LINESIZE, fd); // Read and ignore the mol_type | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 92 | fgets(line, LINESIZE, fd); // Read the charge_type | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'int read_brix_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 247 | fread(brick, sizeof(char), 512, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'void* open_brix_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 79 | fscanf(fd, "%3s", keyWord); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 86 | fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 93 | fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 100 | fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 109 | fscanf(fd, " %s %f %f %f %f %f %f", keyWord, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 | &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 123 | fscanf(fd, " %s %f", keyWord, &prod); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 128 | fscanf(fd, " %s %f", keyWord, &plus); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 135 | fscanf(fd, " %s %f", keyWord, &sigma); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c: In function 'write_psf_structure': contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:782:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 782 | if (strlen(atoms[i].type) > fw) { | ^ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'read_vasp5xdatcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 224 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'read_vasp5xdatcar_structure': In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function 'int {anonymous}::ReadPARM::readparm(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 435 | fscanf(file, " " DBLFMT, &prm->Charges[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 444 | fscanf(file, " " DBLFMT, &prm->Masses[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 510 | fscanf(file, " " DBLFMT, &prm->Rk[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 517 | fscanf(file, " " DBLFMT, &prm->Req[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 524 | fscanf(file, " " DBLFMT, &prm->Tk[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 531 | fscanf(file, " " DBLFMT, &prm->Teq[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 538 | fscanf(file, " " DBLFMT, &prm->Pk[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 545 | fscanf(file, " " DBLFMT, &prm->Pn[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 552 | fscanf(file, " " DBLFMT, &prm->Phase[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 559 | fscanf(file, " " DBLFMT, &prm->Solty[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 567 | fscanf(file, " " DBLFMT, &prm->Cn1[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 575 | fscanf(file, " " DBLFMT, &prm->Cn2[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 756 | fscanf(file, " " DBLFMT, &prm->HB12[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 763 | fscanf(file, " " DBLFMT, &prm->HB6[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 771 | fscanf(file, " " DBLFMT, &H[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:23: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 853 | fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 854 | &prm->Box[0], &prm->Box[1], &prm->Box[2]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:23: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 867 | fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 | &prm->Natcap, &prm->Cutcap, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 | &prm->Xcap, &prm->Ycap, &prm->Zcap); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 174 | for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 180 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 189 | for (i = 0; i < 3; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 194 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 204 | for (i = 0; i < 8; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'open_vasp5xdatcar_read': contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 69 | for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 72 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 77 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:40: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30: contrib/uiuc/plugins/molfile_plugin/src/fortread.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/fortread.h:103:12: warning: 'fortread_4' defined but not used [-Wunused-function] 103 | static int fortread_4(void *dest, int n, int swap, FILE *fd) { | ^~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: 'fort_get_endian_reclen' defined but not used [-Wunused-function] 55 | static int fort_get_endian_reclen(int reclen, int word0, int word1, | ^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: 'fort_eat_recmark' defined but not used [-Wunused-function] 36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) { | ^~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/fortread.h:28: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'swap8_aligned' defined but not used [-Wunused-function] 124 | static void swap8_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'swap2_aligned' defined but not used [-Wunused-function] 96 | static void swap2_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'swap8_unaligned' defined but not used [-Wunused-function] 65 | static void swap8_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'swap4_unaligned' defined but not used [-Wunused-function] 46 | static void swap4_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'int read_dsn6_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 233 | fread(brick, sizeof(char), 512, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'void* open_dsn6_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 91 | fread(fileHeader, sizeof(short), 19, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:89: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'swap8_unaligned' defined but not used [-Wunused-function] 65 | static void swap8_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'swap4_unaligned' defined but not used [-Wunused-function] 46 | static void swap4_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: 'fio_readv' defined but not used [-Wunused-function] 459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) { | ^~~~~~~~~ x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'abinit_readline': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:279:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 279 | for (i = 0; i < strlen(line); ++i) { | ^ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'DEN_read_volumetric_data': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:970:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 970 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:971:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 971 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'POT_read_volumetric_data': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1113:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1113 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1114:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1114 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'abinit_header': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1511:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1511 | fread(skip, 1, 8, fp); | ^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function 'int read_spider_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 286 | fread(datablock, total * sizeof(float), 1, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'GEO_read_next_timestep': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:619:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 619 | fscanf(data->file, "%*s %f %f %f", &x, &y, &z); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:70: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level: x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function 'void* open_cube_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 175 | fgets(readbuf, 1023, cube->fd); // go on to next line | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 181 | fgets(readbuf, 1023, cube->fd); // skip second header line | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:326:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 326 | fgets(readbuf, 1023, cube->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 337 | fgets(readbuf, 1023, cube->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:339:11: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 339 | fscanf(cube->fd, "%d", &cube->nsets); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:344:13: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 344 | fscanf(cube->fd, "%d", &orb); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:349:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 349 | fgets(readbuf, 1023, cube->fd); // gobble up rest of line | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_bonds_aux(void*, int*, int**, int**, float**)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 328 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 346 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 355 | fgets(nextline, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 419 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 194 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 203 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'void* open_bgf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 59 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function 'read_mmtk_cdf_structure': contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:730:15: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 730 | if (len > sizeof(name)) { | ^ contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function 'read_mmtk_cdf_timestep': contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:1060:16: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1060 | for (i=0; i<(3 * mmtk->atom_numberdim); i++) { | ^ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'angular_momentum_expon': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 545 | for (i=0; if); | ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 840 | fgets(readbuf, 1024, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_timestep': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 326 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 339 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 344 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 349 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 363 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 373 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 266 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 268 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 272 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 295 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 305 | fgets(line, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'open_car_read': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 169 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 179 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 182 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 210 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 213 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 224 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 226 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 230 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 234 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 245 | fgets(line, LINESIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_data': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 237 | for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: At top level: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1002:13: warning: 'print_input_data' defined but not used [-Wunused-function] 1002 | static void print_input_data(qmdata_t *data) { | ^~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:162: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function] 133 | static int get_pte_idx(const char *label) | ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: 'get_pte_vdw_radius' defined but not used [-Wunused-function] 109 | static float get_pte_vdw_radius(const int idx) | ^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: 'get_pte_mass' defined but not used [-Wunused-function] 102 | static float get_pte_mass(const int idx) | ^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: 'get_pte_label' defined but not used [-Wunused-function] 95 | static const char *get_pte_label(const int idx) | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 282 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: 'whereami' defined but not used [-Wunused-function] 1097 | static void whereami(FILE *file) { | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: 'thisline' defined but not used [-Wunused-function] 1077 | static void thisline(FILE *file) { | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: 'fpexpftoc' defined but not used [-Wunused-function] 1028 | static int fpexpftoc(char *ftocstr) { | ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: 'strtoupper' defined but not used [-Wunused-function] 901 | static char *strtoupper(char *s) { | ^~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: 'iswhiteline' defined but not used [-Wunused-function] 895 | static int iswhiteline(char *s) { | ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: 'print_matrix4' defined but not used [-Wunused-function] 585 | static void print_matrix4(const float mat[16]) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_metadata': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 150 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'open_vaspchgcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 71 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 75 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 81 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 92 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 103 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:41: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: 'vasp_timestep_unitcell' defined but not used [-Wunused-function] 111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data) | ^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function 'void* open_plt_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 69 | fread(intHeader, sizeof(int), 5, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 82 | fread(floatHeader, sizeof(float), 6, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'angular_momentum_expon': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 545 | for (i=0; ifile, " Ene= %f\n", &orbenergy); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1166:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 1166 | fscanf(data->file, " Spin= %s\n", spin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1167:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 1167 | fscanf(data->file, " Occup= %f\n", &occu); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 840 | fgets(readbuf, 1024, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'open_molden_read': contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:224:11: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 224 | fscanf(data->file, "%d", &natm); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: 'whereami' defined but not used [-Wunused-function] 1097 | static void whereami(FILE *file) { | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: 'thisline' defined but not used [-Wunused-function] 1077 | static void thisline(FILE *file) { | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: 'have_keyline' defined but not used [-Wunused-function] 1006 | static int have_keyline(FILE *file, const char *keystring1, | ^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: 'symmetry_expand' defined but not used [-Wunused-function] 711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms, | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: 'print_matrix4' defined but not used [-Wunused-function] 585 | static void print_matrix4(const float mat[16]) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: 'del_wavefunction' defined but not used [-Wunused-function] 507 | static void del_wavefunction(qm_timestep_t *ts) { | ^~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: 'replace_wavefunction' defined but not used [-Wunused-function] 490 | static void replace_wavefunction(qm_timestep_t *ts, int n) { | ^~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:48: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function] 133 | static int get_pte_idx(const char *label) | ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: 'get_pte_vdw_radius' defined but not used [-Wunused-function] 109 | static float get_pte_vdw_radius(const int idx) | ^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: 'get_pte_mass' defined but not used [-Wunused-function] 102 | static float get_pte_mass(const int idx) | ^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: 'get_pte_label' defined but not used [-Wunused-function] 95 | static const char *get_pte_label(const int idx) | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: '%d' directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=] 127 | sprintf(atom->resname, "%d", resid); | ^~ In function 'read_car_structure_line', inlined from 'read_car_structure' at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:277:12: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999] 127 | sprintf(atom->resname, "%d", resid); | ^~~~ In file included from /usr/include/stdio.h:906, from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85: In function 'sprintf', inlined from 'read_car_structure_line' at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:5, inlined from 'read_car_structure' at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:277:12: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 8 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 96 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 104 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 119 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 153 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 162 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 171 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function 'read_mmtk_cdf_structure': contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:689:5: warning: '__builtin_strncpy' output may be truncated copying 15 bytes from a string of length 15 [-Wstringop-truncation] 689 | strncpy(atom->type, atom->name, sizeof(atom->type)-1); | ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51: contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_readv': contrib/uiuc/plugins/molfile_plugin/src/fastio.h:519:14: warning: comparison of integer expressions of different signedness: 'fio_size_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 519 | if (rc != iov[i].iov_len) | ^~ x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function 'read_dcdheader': contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:191:57: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 191 | } else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:204:54: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 204 | if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:222:26: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 222 | if (input_integer[0] != dcdcordmagic) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:399:45: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 399 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:416:45: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 416 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) { | ^~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function 'read_dcdstep': contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:621:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 621 | if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT; | ^~ contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function 'open_binpos_read': contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 64 | fread(magicchar,sizeof(char),4,fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:625:43: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 625 | if ((tmpbuf[2*i]+tmpbuf[2*i+1]) != sizeof(float)*N) return DCD_BADFORMAT; | ^~ contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 72 | fread(&igarb,sizeof(int),1,fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable 'readlen' set but not used [-Wunused-but-set-variable] 546 | fio_size_t readlen; /* number of bytes actually read */ | ^~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:60: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'swap2_aligned' defined but not used [-Wunused-function] 96 | static void swap2_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:609:12: warning: 'fio_write_str' defined but not used [-Wunused-function] 609 | static int fio_write_str(fio_fd fd, const char *str) { | ^~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:605:12: warning: 'fio_read_int32' defined but not used [-Wunused-function] 605 | static int fio_read_int32(fio_fd fd, int *i) { | ^~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: 'fio_readv' defined but not used [-Wunused-function] 459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) { | ^~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void put_element_ply(PlyFile*, void*)': contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable 'i' [-Wunused-variable] 459 | int i,j,k; | ^ contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c: In function 'read_tinker_structure': contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c:103:5: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 103 | strncpy(atom->name, buffer, sizeof(atom->name)); | ^ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void ascii_get_element(PlyFile*, char*)': contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable 'i' [-Wunused-variable] 1407 | int i,j,k; | ^ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void binary_get_element(PlyFile*, char*)': contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable 'i' [-Wunused-variable] 1541 | int i,j,k; | ^ x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'read_molden_structure': contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:350:7: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 350 | strncpy(atom->type, atname, sizeof(atom->type)); | ^ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:351:7: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 351 | strncpy(atom->name, atname, sizeof(atom->name)); | ^ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:317:7: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 317 | strncpy(atom->name, atname, sizeof(atom->name)); | ^ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:326:7: warning: '__builtin_strncpy' output may be truncated copying 11 bytes from a string of length 1023 [-Wstringop-truncation] 326 | strncpy(data->atoms[i].type, atname, sizeof(data->atoms[i].type)); | ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'read_gamess_structure': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:477:5: warning: '__builtin_strncpy' specified bound 16 equals destination size [-Wstringop-truncation] 477 | strncpy(atom->name, cur_atom->type, sizeof(atom->name)); | ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:478:5: warning: '__builtin_strncpy' specified bound 16 equals destination size [-Wstringop-truncation] 478 | strncpy(atom->type, cur_atom->type, sizeof(atom->type)); | ^ contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function 'void* open_ccp4_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 304 | fgets(symData, 81, fd); | ~~~~~^~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1629 | fread (&len, sizeof(int), 1, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1631 | fread (str, len, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void get_binary_item(FILE*, int, int*, unsigned int*, double*)': contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 2057 | fread (ptr, 1, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 2063 | fread (ptr, 1, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 2069 | fread (ptr, 2, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 2075 | fread (ptr, 2, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 2081 | fread (ptr, 4, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 2087 | fread (ptr, 4, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 2093 | fread (ptr, 4, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 2099 | fread (ptr, 8, 1, fp); | ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'read_gamess_rundata': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:615:3: warning: '__builtin_strncpy' output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation] 615 | strncpy(sys_data->basis_string, data->basis_string, | ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:620:3: warning: '__builtin_strncpy' output may be truncated copying 4096 bytes from a string of length 8191 [-Wstringop-truncation] 620 | strncpy(sys_data->runtitle, data->runtitle, sizeof(sys_data->runtitle)); | ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:621:3: warning: '__builtin_strncpy' output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation] 621 | strncpy(sys_data->geometry, data->geometry, sizeof(sys_data->geometry)); | ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:622:3: warning: '__builtin_strncpy' output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation] 622 | strncpy(sys_data->version_string, data->version_string, | ^ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:239:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 239 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:242:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 242 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:204:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 204 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'open_vaspoutcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:87:10: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 87 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:40: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_coordinates': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1618:5: warning: '__builtin_strncpy' output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation] 1618 | strncpy(atm->type, atname, sizeof(atm->type)); | ^ contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'void* open_uhbd_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 102 | fread(&headersize, sizeof(int), 1, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'char* recreate_command_line(int, char**)': contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1334:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 1334 | line[0] = '\0'; | ~~~~~~~~^~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1333:26: note: destination object of size 0 allocated by 'malloc' 1333 | line = (char *) malloc (sizeof(char) * len); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'write_vaspposcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to 'sizeof' in 'strncpy' call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess] 360 | strncpy(tmptype, atom->type, sizeof(atom->type)); | ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 232 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 237 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 246 | for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 249 | if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 256 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 195 | for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 198 | if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 203 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'open_vaspposcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 69 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 73 | for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 87 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:40: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_basis_options': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1422:5: warning: '__builtin___strncat_chk' output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation] 1422 | strncat(data->basis_string, &data->gbasis[3], 1); | ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1411:5: warning: '__builtin___strncat_chk' output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation] 1411 | strncat(data->basis_string, &data->gbasis[2], 1); | ^ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_data': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 238 | for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_metadata': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 150 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'open_vaspparchg_read': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 71 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 75 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 81 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 92 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 103 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:41: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: 'vasp_timestep_unitcell' defined but not used [-Wunused-function] 111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data) | ^~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)': contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 371 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 306 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function 'int read_parm7_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 78 | fgets(buf, 85, file); | ~~~~~^~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 204 | fgets(buf, 85, file); | ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 257 | fgets(buf, 85, file); | ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_resnames(const char*, int, char*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 275 | fgets(buf, 85, file); | ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 289 | fscanf(file, " %d", &cur); | ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'parmstruct* read_parm7_header(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 368 | fgets(sdum, 512, file); | ~~~~~^~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 371 | fscanf(file, "%s\n", sdum); // "%FLAG" | ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 378 | fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE" | ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 385 | fscanf(file, "%s\n", sdum); // "FORMAT (20a4)" | ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 399 | fgets(prm->title, sizeof(prm->title), file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 427 | fgets(sdum, sizeof(sdum), file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 439 | fscanf(file,parm7, | ~~~~~~^~~~~~~~~~~~ 440 | &prm->Natom, &prm->Ntypes, &prm->Nbonh, &prm->Nbona, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 | &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 | &prm->Jparm, &prm->Nparm); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 443 | fscanf(file, parm7, | ~~~~~~^~~~~~~~~~~~~ 444 | &prm->Nnb, &prm->Nres, &prm->Mbona, &prm->Mtheta, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 | &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 | &prm->Natyp, &prm->Nphb); | ~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 447 | fscanf(file, parm7, &prm->Ifpert, &prm->Nbper, &prm->Ngper, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 | &prm->Ndper, &prm->Mbper, &prm->Mgper, &prm->Mdper, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 | &prm->IfBox, &prm->Nmxrs, &prm->IfCap); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 451 | fscanf(file,"%8d",&prm->Numextra); //BB | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int read_parm7_flag(FILE*, const char*, const char*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 79 | fscanf(file, "%s\n", buf); | ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 87 | fscanf(file, "%s\n", buf); | ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fscanf(file, "%s\n", buf); | ~~~~~~^~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Block.cpp -o build/temp.linux-x86_64-3.11/layer0/Block.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:283:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 283 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:228:27: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 228 | for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:233:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 233 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:237:32: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 237 | for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:252:44: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'open_vaspxdatcar_read': x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:89:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 89 | fgets(lineptr, LINESIZE, poscar); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:92:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 92 | fgets(lineptr, LINESIZE, poscar); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:97:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fgets(lineptr, LINESIZE, poscar); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:111:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 111 | fgets(lineptr, LINESIZE, poscar); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:121:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 121 | fgets(lineptr, LINESIZE, poscar); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:40: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function 'open_rst_read': contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable 'timesteprst' set but not used [-Wunused-but-set-variable] 48 | double timesteprst; | ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:67:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 67 | fgets(title, 82, fd); | ^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:70:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 70 | fgets(line, 82, fd); | ^~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Deferred.cpp -o build/temp.linux-x86_64-3.11/layer0/Deferred.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 288 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 297 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 365 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 387 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 395 | fgets(nextline, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 455 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 241 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 250 | fgets(line, LINESIZE, bgf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'void* open_xbgf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 72 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/File.cpp -o build/temp.linux-x86_64-3.11/layer0/File.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_structure': contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 292 | if (NULL == fgets(fbuffer, 1024, data->file)) | ^~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 295 | if (NULL == fgets(fbuffer, 1024, data->file)) | ^~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_timestep': contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 669 | fgets(fbuffer, 1024, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_timestep': contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 554 | fgets(fbuffer, 1024, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Map.cpp -o build/temp.linux-x86_64-3.11/layer0/Map.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:32: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function] 133 | static int get_pte_idx(const char *label) | ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_structure': contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:362:5: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation] 362 | strncpy(atom->name, buf, sizeof(atom->name)); | ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_input_structure': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1682:5: warning: '__builtin_strncpy' output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation] 1682 | strncpy(atm->type, atname, sizeof(atm->type)); | ^ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_structure': contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:267:5: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation] 267 | strncpy(atom->name, buf, sizeof(atom->name)); | ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'read_vaspxml_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:139:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 139 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:144:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 144 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'open_vaspxml_read': contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:86:8: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 86 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:92:8: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 92 | fgets(lineptr, LINESIZE, data->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:47: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:31: contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function 'read_next_timestep': contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:119:3: warning: '__builtin_strncpy' output may be truncated copying 80 bytes from a string of length 82 [-Wstringop-truncation] 119 | strncpy(tmp, record, PDB_RECORD_LENGTH); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:144:5: warning: '__builtin_strncpy' output may be truncated copying 8 bytes from a string of length 52 [-Wstringop-truncation] 144 | strncpy(numstr, record + 30, 8); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:149:5: warning: '__builtin_strncpy' output may be truncated copying 8 bytes from a string of length 44 [-Wstringop-truncation] 149 | strncpy(numstr+10, record + 38, 8); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:154:5: warning: '__builtin_strncpy' output may be truncated copying 8 bytes from a string of length 36 [-Wstringop-truncation] 154 | strncpy(numstr+20, record + 46, 8); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5: warning: '__builtin_strncpy' output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation] 159 | strncpy(numstr+30, record + 54, 6); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5: warning: '__builtin_strncpy' output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation] 164 | strncpy(numstr+40, record + 60, 6); | ^ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Err.cpp -o build/temp.linux-x86_64-3.11/layer0/Err.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 91 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 116 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 132 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 149 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 155 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 161 | fgets(line, 80, infile); //one more read to keep us in sync | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 170 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 217 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 237 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 256 | fgets(line, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/MemoryUsage.cpp -o build/temp.linux-x86_64-3.11/layer0/MemoryUsage.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/PostProcess.cpp -o build/temp.linux-x86_64-3.11/layer0/PostProcess.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function 'read_pdb_structure': contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:299:3: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 70 [-Wstringop-truncation] 299 | strncpy(name, record + 12, 4); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:304:3: warning: '__builtin_strncpy' output may be truncated copying 1 byte from a string of length 66 [-Wstringop-truncation] 304 | strncpy(altloc, record + 16, 1); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:308:3: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 65 [-Wstringop-truncation] 308 | strncpy(resname, record + 17, 4); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:317:3: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 60 [-Wstringop-truncation] 317 | strncpy(resid, record + 22, 4); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5: warning: '__builtin_strncpy' output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation] 159 | strncpy(numstr+30, record + 54, 6); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5: warning: '__builtin_strncpy' output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation] 164 | strncpy(numstr+40, record + 60, 6); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:330:5: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 10 [-Wstringop-truncation] 330 | strncpy(segname, record + 72, 4); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:339:5: warning: '__builtin_strncpy' output may be truncated copying 2 bytes from a string of length 6 [-Wstringop-truncation] 339 | strncpy(elementsymbol, record + 76, 2); | ^ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Tetsurf.cpp -o build/temp.linux-x86_64-3.11/layer0/Tetsurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function 'open_pdb_read': contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:190:5: warning: '__builtin_strncpy' output may be truncated copying 9 bytes from a string of length 32 [-Wstringop-truncation] 190 | strncpy(date, record + 50, 9); | ^ contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:200:5: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 20 [-Wstringop-truncation] 200 | strncpy(pdbcode, record + 62, 4); | ^ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function 'get_atom_radius': contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable 'type' set but not used [-Wunused-but-set-variable] 166 | char *name, *type; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable 'name' set but not used [-Wunused-but-set-variable] 166 | char *name, *type; | ^~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Util.cpp -o build/temp.linux-x86_64-3.11/layer0/Util.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function 'read_pqr_timestep': contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:109:3: warning: '__builtin_strncpy' output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 109 | strncpy(tmp, record, PQR_RECORD_LENGTH); | ^ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function 'read_pqr_structure': contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:137:3: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 68 [-Wstringop-truncation] 137 | strncpy(name, record+12, 4); name[4] = 0; | ^ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:138:3: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 63 [-Wstringop-truncation] 138 | strncpy(resname, record+17, 4); resname[4] = 0; | ^ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:139:3: warning: '__builtin_strncpy' output may be truncated copying 1 byte from a string of length 59 [-Wstringop-truncation] 139 | strncpy(chain, record+21, 1); chain[1] = 0; | ^ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:140:3: warning: '__builtin_strncpy' output may be truncated copying 4 bytes from a string of length 58 [-Wstringop-truncation] 140 | strncpy(resid, record+22, 4); resid[4] = 0; | ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'int getUniqueResID(char*, int)': contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:443:7: warning: unused variable 'i' [-Wunused-variable] 443 | int i, uid; | ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'int parseStructureFaster(molfile_atom_t*, int*, pdbxParser*)': contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:484:47: warning: unused variable 'j' [-Wunused-variable] 484 | int i, count, atomdata, pos, idx, xyzcount, j; | ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:503:8: warning: unused variable 'oldChain' [-Wunused-variable] 503 | char oldChain[8]; | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'bool readAngleBonds(molfile_atom_t*, pdbxParser*)': contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:803:7: warning: unused variable 'bondTable' [-Wunused-variable] 803 | int bondTable[32]; | ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:807:15: warning: unused variable 'j' [-Wunused-variable] 807 | int i, pos, j, k; | ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:811:8: warning: unused variable 'modelNum' [-Wunused-variable] 811 | char modelNum[8]; | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:822:20: warning: unused variable 'atom' [-Wunused-variable] 822 | molfile_atom_t * atom; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:884:7: warning: unused variable 'test' [-Wunused-variable] 884 | int test = parser->nbonds + bnum; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'bool readRMSDBonds(molfile_atom_t*, pdbxParser*)': contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable 'bondTable' [-Wunused-variable] 984 | int bondTable[32]; | ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable 'j' [-Wunused-variable] 988 | int i, pos, j, k; | ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable 'modelNum' [-Wunused-variable] 991 | char modelNum[8]; | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable 'atom' [-Wunused-variable] 1002 | molfile_atom_t * atom; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'void* open_file_write(const char*, const char*, int)': contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable 'fd' [-Wunused-variable] 1409 | FILE* fd; | ^~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_contrl': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1981:3: warning: '__builtin_strncpy' specified bound 8192 equals destination size [-Wstringop-truncation] 1981 | strncpy(data->geometry, trimright(temp+7), sizeof(data->geometry)); | ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function 'vtf_read_bonds': contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:48: warning: '%s' directive argument is null [-Wformat-overflow=] 147 | sprintf(message, "vtfplugin:%d: error: %s: \"%s\"\n", | ^~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/ccealignmodule.cpp -o build/temp.linux-x86_64-3.11/layer0/ccealignmodule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void eatline(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 238 | fgets(readbuf, 1024, fd); // go on to next line | ~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void* open_xsf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 408 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 442 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 444 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 446 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 448 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 450 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 473 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 508 | fgets(readbuf, 256, xsf->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/GenericBuffer.cpp -o build/temp.linux-x86_64-3.11/layer0/GenericBuffer.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_contrl_firefly': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1818:3: warning: '__builtin_strncpy' specified bound 8192 equals destination size [-Wstringop-truncation] 1818 | strncpy(data->geometry, trimright(temp+7), sizeof(data->geometry)); | ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function 'vtf_open_file_read': contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:538:9: warning: '__builtin___strncat_chk' output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation] 538 | strncat(msg, keyword, 200); | ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:629:7: warning: '__builtin___strncat_chk' output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation] 629 | strncat(msg, keyword, 200); | ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_proc_mem.isra': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1279:5: warning: '__builtin_strncpy' output may be truncated copying 256 bytes from a string of length 8191 [-Wstringop-truncation] 1279 | strncpy(data->memory,&word[2][0],sizeof(data->memory)); | ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1272:5: warning: '__builtin_strncpy' specified bound 256 equals destination size [-Wstringop-truncation] 1272 | strncpy(data->memory,trimright(temp),sizeof(data->memory)); | ^ layer0/MemoryUsage.cpp: In function 'size_t pymol::memory_usage()': layer0/MemoryUsage.cpp:38:21: warning: use of assignment suppression and length modifier together in gnu_scanf format [-Wformat=] 38 | std::fscanf(fp, "%*zu%zu", &vmRSS); | ^~~~~~~~~ layer0/MemoryUsage.cpp:38:16: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 38 | std::fscanf(fp, "%*zu%zu", &vmRSS); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/MyPNG.cpp -o build/temp.linux-x86_64-3.11/layer0/MyPNG.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Feedback.cpp -o build/temp.linux-x86_64-3.11/layer0/Feedback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/CarveHelper.cpp -o build/temp.linux-x86_64-3.11/layer0/CarveHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function 'int {anonymous}::write_structure(void*, int, const molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1904:9: warning: unused variable 'last_ctnumber' [-Wunused-variable] 1904 | int last_ctnumber = -1; | ^~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/ButMode.cpp -o build/temp.linux-x86_64-3.11/layer1/ButMode.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'get_traj_frame.constprop': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:819:5: warning: '__builtin_strncpy' output may be truncated copying 10 bytes from a string of length 10 [-Wstringop-truncation] 819 | strncpy((*atoms)[i].type, (*atoms)[indexmap[i]].type, 10); | ^ x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:57: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] 160 | static int get_pte_idx_from_string(const char *label) { | ^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c: In function 'read_xyz_structure': contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:133:7: warning: '__builtin_strncpy' output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation] 133 | strncpy(atom->name, buffer, sizeof(atom->name)); | ^ contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:127:7: warning: '__builtin_strncpy' specified bound 16 equals destination size [-Wstringop-truncation] 127 | strncpy(atom->name, get_pte_label(idx), sizeof(atom->name)); | ^ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Color.cpp -o build/temp.linux-x86_64-3.11/layer1/Color.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUT.cpp -o build/temp.linux-x86_64-3.11/layer1/FontGLUT.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/ContourSurf.cpp -o build/temp.linux-x86_64-3.11/layer0/ContourSurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'void line3(FILE*, GRASSP*)': contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 186 | fread(line3, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: note: in expansion of macro 'TRASH' 284 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 285 | fread(line, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: note: in expansion of macro 'TRASH' 291 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: note: in expansion of macro 'TRASH' 305 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 306 | fread(line, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: note: in expansion of macro 'TRASH' 307 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: note: in expansion of macro 'TRASH' 311 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: note: in expansion of macro 'TRASH' 313 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: note: in expansion of macro 'TRASH' 318 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 319 | fread(line, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: note: in expansion of macro 'TRASH' 320 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: note: in expansion of macro 'TRASH' 328 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 329 | fread(line, 1, 80, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: note: in expansion of macro 'TRASH' 330 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: note: in expansion of macro 'TRASH' 354 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 355 | fread(vertex, 3 * sizeof(float), nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: note: in expansion of macro 'TRASH' 356 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: note: in expansion of macro 'TRASH' 357 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 358 | fread(access, 3 * sizeof(float), nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: note: in expansion of macro 'TRASH' 359 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: note: in expansion of macro 'TRASH' 360 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 361 | fread(normal, 3 * sizeof(float), nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: note: in expansion of macro 'TRASH' 362 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: note: in expansion of macro 'TRASH' 371 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 372 | fread(triangle, 3 * sizeof(int), ntriangles, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: note: in expansion of macro 'TRASH' 373 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: note: in expansion of macro 'TRASH' 374 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 375 | fread(properties, 3 * sizeof(float), nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: note: in expansion of macro 'TRASH' 394 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 395 | fread(striangle, sizeof(short), 3 * ntriangles, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: note: in expansion of macro 'TRASH' 396 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | #define TRASH fread(trash, 4, 1, infile) | ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: note: in expansion of macro 'TRASH' 397 | TRASH; | ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 398 | fread(properties, sizeof(float), 3 * nvert, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/ShaderMgr.cpp -o build/temp.linux-x86_64-3.11/layer0/ShaderMgr.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Util2.cpp -o build/temp.linux-x86_64-3.11/layer0/Util2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Field.cpp -o build/temp.linux-x86_64-3.11/layer0/Field.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Match.cpp -o build/temp.linux-x86_64-3.11/layer0/Match.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'void DDmkdir(const std::string&, mode_t, int, int)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:23: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] 714 | sprintf(sub, "%03x/", i); | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:22: note: directive argument in the range [0, 2147483646] 714 | sprintf(sub, "%03x/", i); | ^~~~~~~ In file included from /usr/include/stdio.h:906, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: In function 'int sprintf(char*, const char*, ...)', inlined from 'void DDmkdir(const std::string&, mode_t, int, int)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:9: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 5 and 10 bytes into a destination of size 6 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'void DDmkdir(const std::string&, mode_t, int, int)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:30: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] 722 | sprintf(subsub, "%03x", j); | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:29: note: directive argument in the range [0, 2147483646] 722 | sprintf(subsub, "%03x", j); | ^~~~~~ In function 'int sprintf(char*, const char*, ...)', inlined from 'void DDmkdir(const std::string&, mode_t, int, int)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:13: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 4 and 9 bytes into a destination of size 6 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Parse.cpp -o build/temp.linux-x86_64-3.11/layer0/Parse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/GraphicsUtil.cpp -o build/temp.linux-x86_64-3.11/layer0/GraphicsUtil.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'std::string framefile(const std::string&, size_t, size_t, int, int)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:35: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 675 | sprintf(answer, "%03x/", d1); | ^ In function 'int sprintf(char*, const char*, ...)', inlined from 'std::string DDreldir(const std::string&, int, int)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:13, inlined from 'std::string framefile(const std::string&, size_t, size_t, int, int)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 5 and 10 bytes into a destination of size 9 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'std::string framefile(const std::string&, size_t, size_t, int, int)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:35: warning: '%03x' directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=] 673 | sprintf(answer, "%03x/%03x/", d1, d2); | ^~~~ In function 'std::string DDreldir(const std::string&, int, int)', inlined from 'std::string framefile(const std::string&, size_t, size_t, int, int)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23: contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:29: note: directive argument in the range [0, 2147483646] 673 | sprintf(answer, "%03x/%03x/", d1, d2); | ^~~~~~~~~~~~ In function 'int sprintf(char*, const char*, ...)', inlined from 'std::string DDreldir(const std::string&, int, int)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:13, inlined from 'std::string framefile(const std::string&, size_t, size_t, int, int)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 9 and 19 bytes into a destination of size 9 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUTHel12.cpp -o build/temp.linux-x86_64-3.11/layer1/FontGLUTHel12.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Pixmap.cpp -o build/temp.linux-x86_64-3.11/layer0/Pixmap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUTHel18.cpp -o build/temp.linux-x86_64-3.11/layer1/FontGLUTHel18.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Isosurf.cpp -o build/temp.linux-x86_64-3.11/layer0/Isosurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Vector.cpp -o build/temp.linux-x86_64-3.11/layer0/Vector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Crystal.cpp -o build/temp.linux-x86_64-3.11/layer0/Crystal.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Matrix.cpp -o build/temp.linux-x86_64-3.11/layer0/Matrix.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontType.cpp -o build/temp.linux-x86_64-3.11/layer1/FontType.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Texture.cpp -o build/temp.linux-x86_64-3.11/layer0/Texture.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Ortho.cpp -o build/temp.linux-x86_64-3.11/layer1/Ortho.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:71: In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:58:16: warning: writing 8 bytes into a region of size 4 [-Wstringop-overflow=] 58 | dataptr[2] = tmp; | ~~~~~~~~~~~^~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: destination object 'nx' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:58:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 58 | dataptr[2] = tmp; | ~~~~~~~~~~~^~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [8, 12] into destination object 'nx' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:58:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 58 | dataptr[2] = tmp; | ~~~~~~~~~~~^~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [16, 20] into destination object 'nx' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:58:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 58 | dataptr[2] = tmp; | ~~~~~~~~~~~^~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [24, 28] into destination object 'nx' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset 4 into destination object 'nx' of size 4 1494 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset 4 into destination object 'nx' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset 4 into destination object 'nx' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset 4 into destination object 'nx' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [8, 12] into destination object 'nx' of size 4 1494 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset 8 into destination object 'nx' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [8, 12] into destination object 'nx' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset 8 into destination object 'nx' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [12, 16] into destination object 'nx' of size 4 1494 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset 12 into destination object 'nx' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [12, 16] into destination object 'nx' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset 12 into destination object 'nx' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [16, 20] into destination object 'nx' of size 4 1494 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset 16 into destination object 'nx' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [16, 20] into destination object 'nx' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset 16 into destination object 'nx' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [20, 24] into destination object 'nx' of size 4 1494 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset 20 into destination object 'nx' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [20, 24] into destination object 'nx' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset 20 into destination object 'nx' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [24, 28] into destination object 'nx' of size 4 1494 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset 24 into destination object 'nx' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [24, 28] into destination object 'nx' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset 24 into destination object 'nx' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:58:16: warning: writing 8 bytes into a region of size 4 [-Wstringop-overflow=] 58 | dataptr[2] = tmp; | ~~~~~~~~~~~^~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: destination object 'ny' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:58:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 58 | dataptr[2] = tmp; | ~~~~~~~~~~~^~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [8, 12] into destination object 'ny' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:58:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 58 | dataptr[2] = tmp; | ~~~~~~~~~~~^~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [16, 20] into destination object 'ny' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:58:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 58 | dataptr[2] = tmp; | ~~~~~~~~~~~^~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [24, 28] into destination object 'ny' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset 4 into destination object 'ny' of size 4 1494 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset 4 into destination object 'ny' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset 4 into destination object 'ny' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset 4 into destination object 'ny' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [8, 12] into destination object 'ny' of size 4 1494 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset 8 into destination object 'ny' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [8, 12] into destination object 'ny' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset 8 into destination object 'ny' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [12, 16] into destination object 'ny' of size 4 1494 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset 12 into destination object 'ny' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [12, 16] into destination object 'ny' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset 12 into destination object 'ny' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [16, 20] into destination object 'ny' of size 4 1494 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset 16 into destination object 'ny' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [16, 20] into destination object 'ny' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset 16 into destination object 'ny' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [20, 24] into destination object 'ny' of size 4 1494 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset 20 into destination object 'ny' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [20, 24] into destination object 'ny' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset 20 into destination object 'ny' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [24, 28] into destination object 'ny' of size 4 1494 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset 24 into destination object 'ny' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [24, 28] into destination object 'ny' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset 24 into destination object 'ny' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:58:16: warning: writing 8 bytes into a region of size 4 [-Wstringop-overflow=] 58 | dataptr[2] = tmp; | ~~~~~~~~~~~^~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: destination object 'nz' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:58:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 58 | dataptr[2] = tmp; | ~~~~~~~~~~~^~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [8, 12] into destination object 'nz' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:58:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 58 | dataptr[2] = tmp; | ~~~~~~~~~~~^~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [16, 20] into destination object 'nz' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:58:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 58 | dataptr[2] = tmp; | ~~~~~~~~~~~^~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [24, 28] into destination object 'nz' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset 4 into destination object 'nz' of size 4 1494 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset 4 into destination object 'nz' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset 4 into destination object 'nz' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset 4 into destination object 'nz' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [8, 12] into destination object 'nz' of size 4 1494 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset 8 into destination object 'nz' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [8, 12] into destination object 'nz' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset 8 into destination object 'nz' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [12, 16] into destination object 'nz' of size 4 1494 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset 12 into destination object 'nz' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [12, 16] into destination object 'nz' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset 12 into destination object 'nz' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [16, 20] into destination object 'nz' of size 4 1494 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset 16 into destination object 'nz' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [16, 20] into destination object 'nz' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset 16 into destination object 'nz' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [20, 24] into destination object 'nz' of size 4 1494 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset 20 into destination object 'nz' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [20, 24] into destination object 'nz' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset 20 into destination object 'nz' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [24, 28] into destination object 'nz' of size 4 1494 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset 24 into destination object 'nz' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [24, 28] into destination object 'nz' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset 24 into destination object 'nz' of size 4 x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUT8x13.cpp -o build/temp.linux-x86_64-3.11/layer1/FontGLUT8x13.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/CGO.cpp -o build/temp.linux-x86_64-3.11/layer1/CGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Pop.cpp -o build/temp.linux-x86_64-3.11/layer1/Pop.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUT9x15.cpp -o build/temp.linux-x86_64-3.11/layer1/FontGLUT9x15.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In function 'void swap8_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_double(double*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:626:36, inlined from 'void {anonymous}::Blob::get_double(double*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:617:10, inlined from 'int handle_anton_sfxp_v3({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1609:20, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1754:32: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:89:22: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 89 | *(bytePointer+7) = byteArray[0]; | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1601:10: note: at offset 8 into destination object 'positionScale' of size 8 1601 | double positionScale=0, momentumScale=0; | ^~~~~~~~~~~~~ In function 'void swap8_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_double(double*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:626:36, inlined from 'void {anonymous}::Blob::get_double(double*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:617:10, inlined from 'int handle_anton_sfxp_v3({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1609:20, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1754:32: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:89:22: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 89 | *(bytePointer+7) = byteArray[0]; | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1601:10: note: at offset [16, 24] into destination object 'positionScale' of size 8 1601 | double positionScale=0, momentumScale=0; | ^~~~~~~~~~~~~ In function 'void swap8_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_double(double*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:626:36, inlined from 'void {anonymous}::Blob::get_double(double*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:617:10, inlined from 'int handle_anton_sfxp_v3({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1609:20, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1754:32: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:89:22: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 89 | *(bytePointer+7) = byteArray[0]; | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1601:10: note: at offset [24, 32] into destination object 'positionScale' of size 8 1601 | double positionScale=0, momentumScale=0; | ^~~~~~~~~~~~~ In function 'void swap8_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_double(double*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:626:36, inlined from 'void {anonymous}::Blob::get_double(double*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:617:10, inlined from 'int handle_anton_sfxp_v3({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1609:20, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1754:32: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:89:22: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 89 | *(bytePointer+7) = byteArray[0]; | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1601:10: note: at offset [32, 40] into destination object 'positionScale' of size 8 1601 | double positionScale=0, momentumScale=0; | ^~~~~~~~~~~~~ In function 'void swap8_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_double(double*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:626:36, inlined from 'void {anonymous}::Blob::get_double(double*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:617:10, inlined from 'int handle_anton_sfxp_v3({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1609:20, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1754:32: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:89:22: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 89 | *(bytePointer+7) = byteArray[0]; | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1601:10: note: at offset [40, 48] into destination object 'positionScale' of size 8 1601 | double positionScale=0, momentumScale=0; | ^~~~~~~~~~~~~ In function 'void swap8_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_double(double*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:626:36, inlined from 'void {anonymous}::Blob::get_double(double*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:617:10, inlined from 'int handle_anton_sfxp_v3({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1609:20, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1754:32: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:89:22: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 89 | *(bytePointer+7) = byteArray[0]; | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1601:10: note: at offset [48, 56] into destination object 'positionScale' of size 8 1601 | double positionScale=0, momentumScale=0; | ^~~~~~~~~~~~~ In function 'void swap8_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_double(double*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:626:36, inlined from 'void {anonymous}::Blob::get_double(double*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:617:10, inlined from 'int handle_anton_sfxp_v3({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1609:20, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1754:32: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:89:22: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 89 | *(bytePointer+7) = byteArray[0]; | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1601:10: note: at offset [56, 64] into destination object 'positionScale' of size 8 1601 | double positionScale=0, momentumScale=0; | ^~~~~~~~~~~~~ In function 'void swap8_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_double(double*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:626:36, inlined from 'void {anonymous}::Blob::get_double(double*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:617:10, inlined from 'int handle_anton_sfxp_v3({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1618:20, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1754:32: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:89:22: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 89 | *(bytePointer+7) = byteArray[0]; | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1601:27: note: at offset 8 into destination object 'momentumScale' of size 8 1601 | double positionScale=0, momentumScale=0; | ^~~~~~~~~~~~~ In function 'void swap8_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_double(double*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:626:36, inlined from 'void {anonymous}::Blob::get_double(double*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:617:10, inlined from 'int handle_anton_sfxp_v3({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1618:20, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1754:32: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:89:22: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 89 | *(bytePointer+7) = byteArray[0]; | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1601:27: note: at offset [16, 24] into destination object 'momentumScale' of size 8 1601 | double positionScale=0, momentumScale=0; | ^~~~~~~~~~~~~ In function 'void swap8_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_double(double*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:626:36, inlined from 'void {anonymous}::Blob::get_double(double*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:617:10, inlined from 'int handle_anton_sfxp_v3({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1618:20, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1754:32: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:89:22: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 89 | *(bytePointer+7) = byteArray[0]; | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1601:27: note: at offset [24, 32] into destination object 'momentumScale' of size 8 1601 | double positionScale=0, momentumScale=0; | ^~~~~~~~~~~~~ In function 'void swap8_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_double(double*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:626:36, inlined from 'void {anonymous}::Blob::get_double(double*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:617:10, inlined from 'int handle_anton_sfxp_v3({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1618:20, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1754:32: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:89:22: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 89 | *(bytePointer+7) = byteArray[0]; | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1601:27: note: at offset [32, 40] into destination object 'momentumScale' of size 8 1601 | double positionScale=0, momentumScale=0; | ^~~~~~~~~~~~~ In function 'void swap8_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_double(double*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:626:36, inlined from 'void {anonymous}::Blob::get_double(double*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:617:10, inlined from 'int handle_anton_sfxp_v3({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1618:20, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1754:32: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:89:22: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 89 | *(bytePointer+7) = byteArray[0]; | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1601:27: note: at offset [40, 48] into destination object 'momentumScale' of size 8 1601 | double positionScale=0, momentumScale=0; | ^~~~~~~~~~~~~ In function 'void swap8_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_double(double*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:626:36, inlined from 'void {anonymous}::Blob::get_double(double*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:617:10, inlined from 'int handle_anton_sfxp_v3({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1618:20, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1754:32: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:89:22: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 89 | *(bytePointer+7) = byteArray[0]; | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1601:27: note: at offset [48, 56] into destination object 'momentumScale' of size 8 1601 | double positionScale=0, momentumScale=0; | ^~~~~~~~~~~~~ In function 'void swap8_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_double(double*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:626:36, inlined from 'void {anonymous}::Blob::get_double(double*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:617:10, inlined from 'int handle_anton_sfxp_v3({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1618:20, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1754:32: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:89:22: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 89 | *(bytePointer+7) = byteArray[0]; | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1601:27: note: at offset [56, 64] into destination object 'momentumScale' of size 8 1601 | double positionScale=0, momentumScale=0; | ^~~~~~~~~~~~~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_uint32(uint32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_anton_sfxp_v3({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1631:23, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1754:32: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:58:16: warning: writing 8 bytes into a region of size 4 [-Wstringop-overflow=] 58 | dataptr[2] = tmp; | ~~~~~~~~~~~^~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1625:14: note: at offset [8, 12] into destination object 'anton_box' of size 12 1625 | uint32_t anton_box[3]; | ^~~~~~~~~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_uint32(uint32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_anton_sfxp_v3({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1631:23, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1754:32: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:58:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 58 | dataptr[2] = tmp; | ~~~~~~~~~~~^~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1625:14: note: at offset [16, 28] into destination object 'anton_box' of size 12 1625 | uint32_t anton_box[3]; | ^~~~~~~~~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_uint32(uint32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_anton_sfxp_v3({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1631:23, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1754:32: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:58:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 58 | dataptr[2] = tmp; | ~~~~~~~~~~~^~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1625:14: note: at offset [24, 36] into destination object 'anton_box' of size 12 1625 | uint32_t anton_box[3]; | ^~~~~~~~~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_uint32(uint32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_anton_sfxp_v3({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1631:23, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1754:32: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1625:14: note: at offset 12 into destination object 'anton_box' of size 12 1625 | uint32_t anton_box[3]; | ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1625:14: note: at offset 12 into destination object 'anton_box' of size 12 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1625:14: note: at offset 12 into destination object 'anton_box' of size 12 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1625:14: note: at offset 12 into destination object 'anton_box' of size 12 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_uint32(uint32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_anton_sfxp_v3({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1631:23, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1754:32: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1625:14: note: at offset [16, 28] into destination object 'anton_box' of size 12 1625 | uint32_t anton_box[3]; | ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1625:14: note: at offset 16 into destination object 'anton_box' of size 12 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1625:14: note: at offset [16, 28] into destination object 'anton_box' of size 12 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1625:14: note: at offset 16 into destination object 'anton_box' of size 12 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_uint32(uint32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_anton_sfxp_v3({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1631:23, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1754:32: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1625:14: note: at offset [20, 32] into destination object 'anton_box' of size 12 1625 | uint32_t anton_box[3]; | ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1625:14: note: at offset 20 into destination object 'anton_box' of size 12 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1625:14: note: at offset [20, 32] into destination object 'anton_box' of size 12 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1625:14: note: at offset 20 into destination object 'anton_box' of size 12 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_uint32(uint32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_anton_sfxp_v3({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1631:23, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1754:32: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1625:14: note: at offset [24, 36] into destination object 'anton_box' of size 12 1625 | uint32_t anton_box[3]; | ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1625:14: note: at offset 24 into destination object 'anton_box' of size 12 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1625:14: note: at offset [24, 36] into destination object 'anton_box' of size 12 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1625:14: note: at offset 24 into destination object 'anton_box' of size 12 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1550:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:58:16: warning: writing 8 bytes into a region of size 4 [-Wstringop-overflow=] 58 | dataptr[2] = tmp; | ~~~~~~~~~~~^~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:13: note: destination object 'nx' of size 4 1548 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1550:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:58:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 58 | dataptr[2] = tmp; | ~~~~~~~~~~~^~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:13: note: at offset [8, 12] into destination object 'nx' of size 4 1548 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1550:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:58:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 58 | dataptr[2] = tmp; | ~~~~~~~~~~~^~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:13: note: at offset [16, 20] into destination object 'nx' of size 4 1548 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1550:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:58:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 58 | dataptr[2] = tmp; | ~~~~~~~~~~~^~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:13: note: at offset [24, 28] into destination object 'nx' of size 4 1548 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1550:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:13: note: at offset 4 into destination object 'nx' of size 4 1548 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:13: note: at offset 4 into destination object 'nx' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:13: note: at offset 4 into destination object 'nx' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:13: note: at offset 4 into destination object 'nx' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1550:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:13: note: at offset [8, 12] into destination object 'nx' of size 4 1548 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:13: note: at offset 8 into destination object 'nx' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:13: note: at offset [8, 12] into destination object 'nx' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:13: note: at offset 8 into destination object 'nx' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1550:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:13: note: at offset [12, 16] into destination object 'nx' of size 4 1548 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:13: note: at offset 12 into destination object 'nx' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:13: note: at offset [12, 16] into destination object 'nx' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:13: note: at offset 12 into destination object 'nx' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1550:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:13: note: at offset [16, 20] into destination object 'nx' of size 4 1548 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:13: note: at offset 16 into destination object 'nx' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:13: note: at offset [16, 20] into destination object 'nx' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:13: note: at offset 16 into destination object 'nx' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1550:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:13: note: at offset [20, 24] into destination object 'nx' of size 4 1548 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:13: note: at offset 20 into destination object 'nx' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:13: note: at offset [20, 24] into destination object 'nx' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:13: note: at offset 20 into destination object 'nx' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1550:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:13: note: at offset [24, 28] into destination object 'nx' of size 4 1548 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:13: note: at offset 24 into destination object 'nx' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:13: note: at offset [24, 28] into destination object 'nx' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:13: note: at offset 24 into destination object 'nx' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1551:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:58:16: warning: writing 8 bytes into a region of size 4 [-Wstringop-overflow=] 58 | dataptr[2] = tmp; | ~~~~~~~~~~~^~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:17: note: destination object 'ny' of size 4 1548 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1551:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:58:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 58 | dataptr[2] = tmp; | ~~~~~~~~~~~^~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:17: note: at offset [8, 12] into destination object 'ny' of size 4 1548 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1551:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:58:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 58 | dataptr[2] = tmp; | ~~~~~~~~~~~^~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:17: note: at offset [16, 20] into destination object 'ny' of size 4 1548 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1551:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:58:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 58 | dataptr[2] = tmp; | ~~~~~~~~~~~^~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:17: note: at offset [24, 28] into destination object 'ny' of size 4 1548 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1551:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:17: note: at offset 4 into destination object 'ny' of size 4 1548 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:17: note: at offset 4 into destination object 'ny' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:17: note: at offset 4 into destination object 'ny' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:17: note: at offset 4 into destination object 'ny' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1551:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:17: note: at offset [8, 12] into destination object 'ny' of size 4 1548 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:17: note: at offset 8 into destination object 'ny' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:17: note: at offset [8, 12] into destination object 'ny' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:17: note: at offset 8 into destination object 'ny' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1551:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:17: note: at offset [12, 16] into destination object 'ny' of size 4 1548 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:17: note: at offset 12 into destination object 'ny' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:17: note: at offset [12, 16] into destination object 'ny' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:17: note: at offset 12 into destination object 'ny' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1551:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:17: note: at offset [16, 20] into destination object 'ny' of size 4 1548 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:17: note: at offset 16 into destination object 'ny' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:17: note: at offset [16, 20] into destination object 'ny' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:17: note: at offset 16 into destination object 'ny' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1551:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:17: note: at offset [20, 24] into destination object 'ny' of size 4 1548 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:17: note: at offset 20 into destination object 'ny' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:17: note: at offset [20, 24] into destination object 'ny' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:17: note: at offset 20 into destination object 'ny' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1551:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:17: note: at offset [24, 28] into destination object 'ny' of size 4 1548 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:17: note: at offset 24 into destination object 'ny' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:17: note: at offset [24, 28] into destination object 'ny' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:17: note: at offset 24 into destination object 'ny' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1552:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:58:16: warning: writing 8 bytes into a region of size 4 [-Wstringop-overflow=] 58 | dataptr[2] = tmp; | ~~~~~~~~~~~^~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: destination object 'nz' of size 4 1548 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1552:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:58:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 58 | dataptr[2] = tmp; | ~~~~~~~~~~~^~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset [8, 12] into destination object 'nz' of size 4 1548 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1552:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:58:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 58 | dataptr[2] = tmp; | ~~~~~~~~~~~^~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset [16, 20] into destination object 'nz' of size 4 1548 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1552:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:58:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 58 | dataptr[2] = tmp; | ~~~~~~~~~~~^~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset [24, 28] into destination object 'nz' of size 4 1548 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1552:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset 4 into destination object 'nz' of size 4 1548 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset 4 into destination object 'nz' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset 4 into destination object 'nz' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset 4 into destination object 'nz' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1552:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset [8, 12] into destination object 'nz' of size 4 1548 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset 8 into destination object 'nz' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset [8, 12] into destination object 'nz' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset 8 into destination object 'nz' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1552:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset [12, 16] into destination object 'nz' of size 4 1548 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset 12 into destination object 'nz' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset [12, 16] into destination object 'nz' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset 12 into destination object 'nz' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1552:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset [16, 20] into destination object 'nz' of size 4 1548 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset 16 into destination object 'nz' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset [16, 20] into destination object 'nz' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset 16 into destination object 'nz' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1552:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset [20, 24] into destination object 'nz' of size 4 1548 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset 20 into destination object 'nz' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset [20, 24] into destination object 'nz' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset 20 into destination object 'nz' of size 4 In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1552:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 4 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset [24, 28] into destination object 'nz' of size 4 1548 | int32_t nx, ny, nz; | ^~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset 24 into destination object 'nz' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset [24, 28] into destination object 'nz' of size 4 contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset 24 into destination object 'nz' of size 4 x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUTHel10.cpp -o build/temp.linux-x86_64-3.11/layer1/FontGLUTHel10.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/PyMOLObject.cpp -o build/temp.linux-x86_64-3.11/layer1/PyMOLObject.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Scene.cpp -o build/temp.linux-x86_64-3.11/layer1/Scene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SceneRender.cpp -o build/temp.linux-x86_64-3.11/layer1/SceneRender.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/marching_cubes.cpp -o build/temp.linux-x86_64-3.11/layer0/marching_cubes.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Word.cpp -o build/temp.linux-x86_64-3.11/layer0/Word.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Movie.cpp -o build/temp.linux-x86_64-3.11/layer1/Movie.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Tracker.cpp -o build/temp.linux-x86_64-3.11/layer0/Tracker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Triangle.cpp -o build/temp.linux-x86_64-3.11/layer0/Triangle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Shaker.cpp -o build/temp.linux-x86_64-3.11/layer1/Shaker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/os_gl.cpp -o build/temp.linux-x86_64-3.11/layer0/os_gl.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'int read_edm_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 240 | fgets(readbuf, 13, edm->fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'void eatline(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 44 | fgets(readbuf, 1024, fd); // go on to next line | ~~~~~^~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/MemoryDebug.cpp -o build/temp.linux-x86_64-3.11/layer0/MemoryDebug.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Symmetry.cpp -o build/temp.linux-x86_64-3.11/layer1/Symmetry.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Basis.cpp -o build/temp.linux-x86_64-3.11/layer1/Basis.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/P.cpp -o build/temp.linux-x86_64-3.11/layer1/P.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Wizard.cpp -o build/temp.linux-x86_64-3.11/layer1/Wizard.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/BondTypeHistory.cpp -o build/temp.linux-x86_64-3.11/layer2/BondTypeHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/ScrollBar.cpp -o build/temp.linux-x86_64-3.11/layer1/ScrollBar.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SymOp.cpp -o build/temp.linux-x86_64-3.11/layer1/SymOp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Ray.cpp -o build/temp.linux-x86_64-3.11/layer1/Ray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer1/SymOp.cpp: In member function 'std::string pymol::SymOp::to_string() const': layer1/SymOp.cpp:37:32: warning: '%d' directive output may be truncated writing between 1 and 4 bytes into a region of size between 0 and 5 [-Wformat-truncation=] 37 | std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5); | ^~ layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132] 37 | std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5); | ^~~~~~~~~~~ layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132] In file included from /usr/include/stdio.h:906, from /usr/include/c++/12/cstdio:42, from /usr/include/c++/12/ext/string_conversions.h:43, from /usr/include/c++/12/bits/basic_string.h:3960, from /usr/include/c++/12/string:53, from layer1/SymOp.h:9, from layer1/SymOp.cpp:7: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'std::string pymol::SymOp::to_string() const' at layer1/SymOp.cpp:37:16: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 6 and 17 bytes into a destination of size 8 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SymOpPConv.cpp -o build/temp.linux-x86_64-3.11/layer1/SymOpPConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 278 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 297 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 319 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 357 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 223 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 241 | fgets(line, LINESIZE, mdf->file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'void* open_mdf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 164 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 176 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 183 | fgets(line, LINESIZE, fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/DistSet.cpp -o build/temp.linux-x86_64-3.11/layer2/DistSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SymOpTools.cpp -o build/temp.linux-x86_64-3.11/layer1/SymOpTools.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/CifFile.cpp -o build/temp.linux-x86_64-3.11/layer2/CifFile.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Text.cpp -o build/temp.linux-x86_64-3.11/layer1/Text.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/MmtfMoleculeReader.cpp -o build/temp.linux-x86_64-3.11/layer2/MmtfMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Seq.cpp -o build/temp.linux-x86_64-3.11/layer1/Seq.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer1/Wizard.cpp: In member function 'virtual int CWizard::release(int, int, int, int)': layer1/Wizard.cpp:571:18: warning: unused variable 'wiz' [-Wunused-variable] 571 | if (auto wiz = WizardGet(G)) { | ^~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectCGO.cpp -o build/temp.linux-x86_64-3.11/layer2/ObjectCGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectGadgetRamp.cpp -o build/temp.linux-x86_64-3.11/layer2/ObjectGadgetRamp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/AssemblyHelpers.cpp -o build/temp.linux-x86_64-3.11/layer2/AssemblyHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMolecule.cpp -o build/temp.linux-x86_64-3.11/layer2/ObjectMolecule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/Mol2Typing.cpp -o build/temp.linux-x86_64-3.11/layer2/Mol2Typing.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/GadgetSet.cpp -o build/temp.linux-x86_64-3.11/layer2/GadgetSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/PConv.cpp -o build/temp.linux-x86_64-3.11/layer1/PConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer1/Ray.cpp: In function 'void RayRenderVRML2(CRay*, int, int, char**, float, float, float, float, float)': layer1/Ray.cpp:1535:20: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 914 [-Wformat-overflow=] 1535 | "%s" | ^~ ...... 1540 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry); | ~~~~~~~~ layer1/Ray.cpp:1530:18: note: 'sprintf' output between 116 and 3302 bytes into a destination of size 1024 1530 | sprintf(buffer, | ~~~~~~~^~~~~~~~ 1531 | "Transform {\n" | ~~~~~~~~~~~~~~~ 1532 | " translation %8.6f %8.6f %8.6f\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1533 | " rotation %8.6f %8.6f %8.6f %8.6f\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1534 | " children [\n" | ~~~~~~~~~~~~~~~ 1535 | "%s" | ~~~~ 1536 | " ]\n" | ~~~~~~ 1537 | "}\n", | ~~~~~~ 1538 | vert2[0] - mid[0], | ~~~~~~~~~~~~~~~~~~ 1539 | vert2[1] - mid[1], | ~~~~~~~~~~~~~~~~~~ 1540 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/ShaderPrg.cpp -o build/temp.linux-x86_64-3.11/layer0/ShaderPrg.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/AtomInfo.cpp -o build/temp.linux-x86_64-3.11/layer2/AtomInfo.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/MolV3000.cpp -o build/temp.linux-x86_64-3.11/layer2/MolV3000.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/CifMoleculeReader.cpp -o build/temp.linux-x86_64-3.11/layer2/CifMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Setting.cpp -o build/temp.linux-x86_64-3.11/layer1/Setting.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Control.cpp -o build/temp.linux-x86_64-3.11/layer1/Control.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectCallback.cpp -o build/temp.linux-x86_64-3.11/layer2/ObjectCallback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/HydrogenAdder.cpp -o build/temp.linux-x86_64-3.11/layer2/HydrogenAdder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SceneMouse.cpp -o build/temp.linux-x86_64-3.11/layer1/SceneMouse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectGroup.cpp -o build/temp.linux-x86_64-3.11/layer2/ObjectGroup.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Picking.cpp -o build/temp.linux-x86_64-3.11/layer1/Picking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectAlignment.cpp -o build/temp.linux-x86_64-3.11/layer2/ObjectAlignment.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectSurface.cpp -o build/temp.linux-x86_64-3.11/layer2/ObjectSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMap.cpp -o build/temp.linux-x86_64-3.11/layer2/ObjectMap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Sphere.cpp -o build/temp.linux-x86_64-3.11/layer0/Sphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectMolecule.cpp: In function 'CoordSet* ObjectMoleculeMOLStr2CoordSet.constprop(PyMOLGlobals*, const char*, AtomInfoType**, const char**)': layer2/ObjectMolecule.cpp:7579:37: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 224 [-Wformat-truncation=] 7579 | " ObjMolMOLStr2CoordSet: title '%s'\n", nameTmp ENDFB(G) | ^~ ~~~~~~~ In file included from layer1/Ortho.h:32, from layer2/ObjectMolecule.cpp:31: layer0/Feedback.h:274:15: note: 'snprintf' output between 34 and 289 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMolecule.cpp:7578:3: note: in expansion of macro 'PRINTFB' 7578 | PRINTFB(G, FB_ObjectMolecule, FB_Blather) | ^~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/MmodTyping.cpp -o build/temp.linux-x86_64-3.11/layer2/MmodTyping.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Extrude.cpp -o build/temp.linux-x86_64-3.11/layer1/Extrude.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepCylBond.cpp -o build/temp.linux-x86_64-3.11/layer2/RepCylBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectDist.cpp -o build/temp.linux-x86_64-3.11/layer2/ObjectDist.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/AtomInfoHistory.cpp -o build/temp.linux-x86_64-3.11/layer2/AtomInfoHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepDot.cpp -o build/temp.linux-x86_64-3.11/layer2/RepDot.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer1/SceneMouse.cpp: In function 'void SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, const NamedPicking&, int, bool)': layer1/SceneMouse.cpp:455:32: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 237 [-Wformat-truncation=] 455 | " You clicked %s -> (%s)\n", buffer.c_str(), name ENDFB(G); | ^~ ~~~~ In file included from /usr/include/stdio.h:906, from /usr/include/c++/12/cstdio:42, from /usr/include/c++/12/ext/string_conversions.h:43, from /usr/include/c++/12/bits/basic_string.h:3960, from /usr/include/c++/12/string:53, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from include/pymol/zstring_view.h:12, from layer1/SceneMouse.h:4, from layer1/SceneMouse.cpp:1: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, const NamedPicking&, int, bool)' at layer1/SceneMouse.cpp:454:11: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output 21 or more bytes (assuming 276) into a destination of size 255 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Rep.cpp -o build/temp.linux-x86_64-3.11/layer1/Rep.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceDump(ObjectSurface*, const char*, int, int)': layer2/ObjectSurface.cpp:268:30: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] 268 | " ObjectSurfaceDump: %s written to %s\n", I->Name, fname ENDFB(I->G); | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectSurface.cpp:35: layer0/Feedback.h:274:15: note: 'snprintf' output 34 or more bytes (assuming 289) into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectSurface.cpp:267:7: note: in expansion of macro 'PRINTFB' 267 | PRINTFB(I->G, FB_ObjectSurface, FB_Actions) | ^~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepNonbonded.cpp -o build/temp.linux-x86_64-3.11/layer2/RepNonbonded.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepSphereGenerate.cpp -o build/temp.linux-x86_64-3.11/layer2/RepSphereGenerate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/ScenePicking.cpp -o build/temp.linux-x86_64-3.11/layer1/ScenePicking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectSurface.cpp: In member function 'virtual void ObjectSurface::update()': layer2/ObjectSurface.cpp:493:43: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=] 493 | " ObjectSurface: updating \"%s\".\n", I->Name ENDFB(I->G); | ^~ layer0/Feedback.h:274:15: note: 'snprintf' output between 30 and 285 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectSurface.cpp:492:13: note: in expansion of macro 'PRINTFB' 492 | PRINTFB(I->G, FB_ObjectSurface, FB_Details) | ^~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepEllipsoid.cpp -o build/temp.linux-x86_64-3.11/layer2/RepEllipsoid.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectMolecule.cpp: In member function 'virtual void ObjectMolecule::update()': layer2/ObjectMolecule.cpp:10605:82: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=] 10605 | " ObjectMolecule-DEBUG: updating representations for state %d of \"%s\".\n", | ^~ layer0/Feedback.h:274:15: note: 'snprintf' output between 68 and 333 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMolecule.cpp:10604:13: note: in expansion of macro 'PRINTFB' 10604 | PRINTFB(G, FB_ObjectMolecule, FB_Blather) | ^~~~~~~ layer2/ObjectMolecule.cpp: In function 'int ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, const float*, int, int)': layer2/ObjectMolecule.cpp:10731:43: warning: '%s' directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=] 10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n", | ^~ 10732 | buffer, v[0], v[1], v[2], state + 1, mode, 0); | ~~~~~~ layer2/ObjectMolecule.cpp:10731:21: note: directive argument in the range [-2147483647, 2147483647] 10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMolecule.cpp:10731:14: note: 'sprintf' output between 78 and 2036 bytes into a destination of size 1024 10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n", | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 10732 | buffer, v[0], v[1], v[2], state + 1, mode, 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectVolume.cpp -o build/temp.linux-x86_64-3.11/layer2/ObjectVolume.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepDihedral.cpp -o build/temp.linux-x86_64-3.11/layer2/RepDihedral.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/Sculpt.cpp -o build/temp.linux-x86_64-3.11/layer2/Sculpt.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Font.cpp -o build/temp.linux-x86_64-3.11/layer1/Font.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/AtomIterators.cpp -o build/temp.linux-x86_64-3.11/layer3/AtomIterators.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepSphereImmediate.cpp -o build/temp.linux-x86_64-3.11/layer2/RepSphereImmediate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectGadget.cpp -o build/temp.linux-x86_64-3.11/layer2/ObjectGadget.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepNonbondedSphere.cpp -o build/temp.linux-x86_64-3.11/layer2/RepNonbondedSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SceneRay.cpp -o build/temp.linux-x86_64-3.11/layer1/SceneRay.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepLabel.cpp -o build/temp.linux-x86_64-3.11/layer2/RepLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectMap.cpp: In function 'void ObjectMapDump(const ObjectMap*, const char*, int, int)': layer2/ObjectMap.cpp:5982:24: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 239 [-Wformat-truncation=] 5982 | " ObjectMapDump: %s written to %s\n", om->Name, fname ENDFB(om->G); | ^~ In file included from /usr/include/stdio.h:906, from /usr/include/python3.11/Python.h:24, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void ObjectMapDump(const ObjectMap*, const char*, int, int)' at layer2/ObjectMap.cpp:5981:5: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output 30 or more bytes (assuming 285) into a destination of size 255 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepDistDash.cpp -o build/temp.linux-x86_64-3.11/layer2/RepDistDash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectVolume.cpp: In function 'ObjectMapState* ObjectVolumeStateGetMapState(ObjectVolumeState*)': layer2/ObjectVolume.cpp:74:33: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] 74 | "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName | ^~ In file included from /usr/include/stdio.h:906, from /usr/include/python3.11/Python.h:24, from layer0/os_python.h:34, from layer2/ObjectVolume.cpp:20: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'ObjectMapState* ObjectVolumeStateGetMapState(ObjectVolumeState*)' at layer2/ObjectVolume.cpp:73:5: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/ExecutivePython.cpp -o build/temp.linux-x86_64-3.11/layer3/ExecutivePython.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/CifDataValueFormatter.cpp -o build/temp.linux-x86_64-3.11/layer3/CifDataValueFormatter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepSurface.cpp -o build/temp.linux-x86_64-3.11/layer2/RepSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/Editor.cpp -o build/temp.linux-x86_64-3.11/layer3/Editor.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepRibbon.cpp -o build/temp.linux-x86_64-3.11/layer2/RepRibbon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/TypeFace.cpp -o build/temp.linux-x86_64-3.11/layer1/TypeFace.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/View.cpp -o build/temp.linux-x86_64-3.11/layer1/View.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/PlugIOManager.cpp -o build/temp.linux-x86_64-3.11/layer3/PlugIOManager.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepDistLabel.cpp -o build/temp.linux-x86_64-3.11/layer2/RepDistLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/MaeExportHelpers.cpp -o build/temp.linux-x86_64-3.11/layer3/MaeExportHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepAngle.cpp -o build/temp.linux-x86_64-3.11/layer2/RepAngle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepMesh.cpp -o build/temp.linux-x86_64-3.11/layer2/RepMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/SculptCache.cpp -o build/temp.linux-x86_64-3.11/layer2/SculptCache.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/CoordSet.cpp -o build/temp.linux-x86_64-3.11/layer2/CoordSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/SideChainHelper.cpp -o build/temp.linux-x86_64-3.11/layer2/SideChainHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectMap.cpp: In function 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)': layer2/ObjectMap.cpp:2961:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 2961 | " PHIStrToMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:2960:5, inlined from 'ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:4803:25, inlined from 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)' at layer2/ObjectMap.cpp:4835:28: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)': layer2/ObjectMap.cpp:2970:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 2970 | " PHIStrToMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:2969:5, inlined from 'ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:4803:25, inlined from 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)' at layer2/ObjectMap.cpp:4835:28: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)': layer2/ObjectMap.cpp:2976:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 2976 | " PHIStrToMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:2975:5, inlined from 'ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:4803:25, inlined from 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)' at layer2/ObjectMap.cpp:4835:28: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)': layer2/ObjectMap.cpp:3058:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 3058 | " PHIStrToMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:3057:5, inlined from 'ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:4803:25, inlined from 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)' at layer2/ObjectMap.cpp:4835:28: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepSphere.cpp -o build/temp.linux-x86_64-3.11/layer2/RepSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer3/Editor.cpp: In function 'void EditorPrepareDrag(PyMOLGlobals*, pymol::CObject*, int, int, int, int)': layer3/Editor.cpp:1933:29: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=] 1933 | " Editor: grabbing (%s).", name ENDFB(G); | ^~ ~~~~ In file included from layer1/Ortho.h:32, from layer1/ButMode.h:20, from layer3/Editor.cpp:28: layer0/Feedback.h:274:15: note: 'snprintf' output between 22 and 277 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Editor.cpp:1932:7: note: in expansion of macro 'PRINTFB' 1932 | PRINTFB(G, FB_Editor, FB_Blather) | ^~~~~~~ layer3/Editor.cpp: In function 'void EditorDefineExtraPks(PyMOLGlobals*)': layer3/Editor.cpp:335:29: warning: '%s' directive writing up to 255 bytes into a region of size 249 [-Wformat-overflow=] 335 | sprintf(buffer, "(byres %s)", name); | ^~ ~~~~ layer3/Editor.cpp:335:12: note: 'sprintf' output between 9 and 264 bytes into a destination of size 256 335 | sprintf(buffer, "(byres %s)", name); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Editor.cpp:337:31: warning: '%s' directive writing up to 255 bytes into a region of size 247 [-Wformat-overflow=] 337 | sprintf(buffer, "(bychain %s)", name); | ^~ ~~~~ layer3/Editor.cpp:337:12: note: 'sprintf' output between 11 and 266 bytes into a destination of size 256 337 | sprintf(buffer, "(bychain %s)", name); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Editor.cpp:339:32: warning: '%s' directive writing up to 255 bytes into a region of size 246 [-Wformat-overflow=] 339 | sprintf(buffer, "(byobject %s)", name); | ^~ ~~~~ layer3/Editor.cpp:339:12: note: 'sprintf' output between 12 and 267 bytes into a destination of size 256 339 | sprintf(buffer, "(byobject %s)", name); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMolecule2.cpp -o build/temp.linux-x86_64-3.11/layer2/ObjectMolecule2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/SelectorTmp.cpp -o build/temp.linux-x86_64-3.11/layer3/SelectorTmp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectMap.cpp: In function 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)': layer2/ObjectMap.cpp:4290:18: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] 4290 | " ObjectMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:4289:3: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)': layer2/ObjectMap.cpp:4290:18: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] 4290 | " ObjectMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:4289:3: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/VFont.cpp -o build/temp.linux-x86_64-3.11/layer2/VFont.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/MoleculeExporter.cpp -o build/temp.linux-x86_64-3.11/layer3/MoleculeExporter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepCartoon.cpp -o build/temp.linux-x86_64-3.11/layer2/RepCartoon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer3/PlugIOManager.cpp: In function 'pymol::CObject* PlugIOManagerLoad(PyMOLGlobals*, pymol::CObject**, const char*, int, int, const char*, int)': layer3/PlugIOManager.cpp:946:65: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=] 946 | " PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G); | ^~ In file included from /usr/include/stdio.h:906, from /usr/include/python3.11/Python.h:24, from layer0/os_python.h:34, from layer3/PlugIOManager.cpp:20: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'pymol::CObject* PlugIOManagerLoad(PyMOLGlobals*, pymol::CObject**, const char*, int, int, const char*, int)' at layer3/PlugIOManager.cpp:945:7: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 58 and 313 bytes into a destination of size 255 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer4/Menu.cpp -o build/temp.linux-x86_64-3.11/layer4/Menu.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/COLLADA.cpp -o build/temp.linux-x86_64-3.11/layer1/COLLADA.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/RingFinder.cpp -o build/temp.linux-x86_64-3.11/layer3/RingFinder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/Executive.cpp -o build/temp.linux-x86_64-3.11/layer3/Executive.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer5/main.cpp -o build/temp.linux-x86_64-3.11/layer5/main.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMesh.cpp -o build/temp.linux-x86_64-3.11/layer2/ObjectMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/SpecRec.cpp -o build/temp.linux-x86_64-3.11/layer3/SpecRec.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVLexicon.cpp -o build/temp.linux-x86_64-3.11/ov/src/OVLexicon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/ov_utility.cpp -o build/temp.linux-x86_64-3.11/ov/src/ov_utility.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVOneToAny.cpp -o build/temp.linux-x86_64-3.11/ov/src/OVOneToAny.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer4/PopUp.cpp -o build/temp.linux-x86_64-3.11/layer4/PopUp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVOneToOne.cpp -o build/temp.linux-x86_64-3.11/ov/src/OVOneToOne.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/Seeker.cpp -o build/temp.linux-x86_64-3.11/layer3/Seeker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVRandom.cpp -o build/temp.linux-x86_64-3.11/ov/src/OVRandom.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/SpecRecSpecial.cpp -o build/temp.linux-x86_64-3.11/layer3/SpecRecSpecial.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVContext.cpp -o build/temp.linux-x86_64-3.11/ov/src/OVContext.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVHeap.cpp -o build/temp.linux-x86_64-3.11/ov/src/OVHeap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVHeapArray.cpp -o build/temp.linux-x86_64-3.11/ov/src/OVHeapArray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectMolecule2.cpp: In function 'int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, const float*, int, int, int, int)': layer2/ObjectMolecule2.cpp:335:27: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] 335 | " ObjMol: created %s/%s/%s/%s`%d%c/%s\n", | ^~ In file included from /usr/include/stdio.h:906, from /usr/include/python3.11/Python.h:24, from layer0/os_python.h:34, from layer2/ObjectMolecule2.cpp:24: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, const float*, int, int, int, int)' at layer2/ObjectMolecule2.cpp:334:7: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 26 and 291 bytes into a destination of size 255 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Character.cpp -o build/temp.linux-x86_64-3.11/layer1/Character.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer5/PyMOL.cpp -o build/temp.linux-x86_64-3.11/layer5/PyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer2/ObjectMesh.cpp: In member function 'virtual void ObjectMesh::update()': layer2/ObjectMesh.cpp:502:41: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=] 502 | "ObjectMeshUpdate-Error: map '%s' has been deleted.\n", ms->MapName | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectMesh.cpp:33: layer0/Feedback.h:274:15: note: 'snprintf' output between 50 and 305 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMesh.cpp:501:9: note: in expansion of macro 'PRINTFB' 501 | PRINTFB(I->G, FB_ObjectMesh, FB_Errors) | ^~~~~~~ layer2/ObjectMesh.cpp:535:40: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=] 535 | " ObjectMesh: updating \"%s\".\n", I->Name ENDFB(G); | ^~ layer0/Feedback.h:274:15: note: 'snprintf' output between 27 and 282 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMesh.cpp:534:13: note: in expansion of macro 'PRINTFB' 534 | PRINTFB(G, FB_ObjectMesh, FB_Details) | ^~~~~~~ layer2/ObjectMesh.cpp: In function 'void ObjectMeshDump(ObjectMesh*, const char*, int, int)': layer2/ObjectMesh.cpp:329:27: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] 329 | " ObjectMeshDump: %s written to %s\n", I->Name, fname ENDFB(I->G); | ^~ layer0/Feedback.h:274:15: note: 'snprintf' output 31 or more bytes (assuming 286) into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectMesh.cpp:328:7: note: in expansion of macro 'PRINTFB' 328 | PRINTFB(I->G, FB_ObjectMesh, FB_Actions) | ^~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer4/Cmd.cpp -o build/temp.linux-x86_64-3.11/layer4/Cmd.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepWireBond.cpp -o build/temp.linux-x86_64-3.11/layer2/RepWireBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMolecule3.cpp -o build/temp.linux-x86_64-3.11/layer2/ObjectMolecule3.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/Selector.cpp -o build/temp.linux-x86_64-3.11/layer3/Selector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/MovieScene.cpp -o build/temp.linux-x86_64-3.11/layer3/MovieScene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveRemoveAtoms(PyMOLGlobals*, const char*, int)': layer3/Executive.cpp:9007:58: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=] 9007 | " Remove: eliminated %d atoms in model \"%s\".\n", | ^~ In file included from layer1/Ortho.h:32, from layer3/ExecutiveDef.h:3, from layer3/Executive.h:29, from layer3/Executive.cpp:38: layer0/Feedback.h:274:15: note: 'snprintf' output between 42 and 307 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:9006:15: note: in expansion of macro 'PRINTFB' 9006 | PRINTFB(G, FB_Editor, FB_Actions) | ^~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, const char*, const char*, const char*, int, int, int)': layer3/Executive.cpp:11424:28: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 11424 | " Setting: %s set for %d bonds in object \"%s\".\n", | ^~ 11425 | name, nSet, obj->Name ENDF(G); | ~~~~ layer3/Executive.cpp:11424:17: note: directive argument in the range [1, 2147483647] 11424 | " Setting: %s set for %d bonds in object \"%s\".\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output between 42 and 560 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11423:15: note: in expansion of macro 'PRINTF' 11423 | PRINTF | ^~~~~~ layer3/Executive.cpp: In function 'PyObject* ExecutiveGetBondSetting(PyMOLGlobals*, int, char*, const char*, int, int, int)': layer3/Executive.cpp:11505:26: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 11505 | " Getting: %s for %d bonds in object \"%s\".\n", | ^~ 11506 | name, nSet, obj->Name ENDF(G); | ~~~~ layer3/Executive.cpp:11505:15: note: directive argument in the range [1, 2147483647] 11505 | " Getting: %s for %d bonds in object \"%s\".\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output between 38 and 556 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11504:13: note: in expansion of macro 'PRINTF' 11504 | PRINTF | ^~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer5/TestPyMOL.cpp -o build/temp.linux-x86_64-3.11/layer5/TestPyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer3/Executive.cpp: In function 'int ExecutiveSetBondSetting(PyMOLGlobals*, int, PyObject*, const char*, const char*, int, int, int)': layer3/Executive.cpp:11605:62: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 208 and 217 [-Wformat-truncation=] 11605 | " Setting: %s set for %d bonds in object \"%s\".\n", | ^~ layer0/Feedback.h:282:53: note: 'snprintf' output 42 or more bytes (assuming 306) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11604:17: note: in expansion of macro 'PRINTF' 11604 | PRINTF | ^~~~~~ layer3/Executive.cpp: In function 'int ExecutiveUnsetBondSetting(PyMOLGlobals*, int, const char*, const char*, int, int, int)': layer3/Executive.cpp:11684:26: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 11684 | " Setting: %s unset for %d bonds in object \"%s\".\n", | ^~ 11685 | name, nSet, rec->obj->Name ENDF(G); | ~~~~ layer3/Executive.cpp:11684:15: note: directive argument in the range [1, 2147483647] 11684 | " Setting: %s unset for %d bonds in object \"%s\".\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output between 44 and 562 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11683:13: note: in expansion of macro 'PRINTF' 11683 | PRINTF | ^~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetObjSettingFromString(PyMOLGlobals*, int, const char*, pymol::CObject*, int, int, int)': layer3/Executive.cpp:12226:30: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12226 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~ 12227 | name, value2, obj->Name, state + 1 ENDF(G); | ~~~~ layer3/Executive.cpp:12226:19: note: directive argument in the range [1, 2147483647] 12226 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output between 43 and 1584 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12225:17: note: in expansion of macro 'PRINTF' 12225 | PRINTF | ^~~~~~ layer3/Executive.cpp:12218:30: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12218 | " Setting: %s set to %s in object \"%s\".\n", | ^~ 12219 | name, value2, obj->Name ENDF(G); | ~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output between 34 and 1566 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12217:17: note: in expansion of macro 'PRINTF' 12217 | PRINTF | ^~~~~~ layer3/Executive.cpp:12197:29: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12197 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); | ^~ ~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output between 21 and 1298 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12197:11: note: in expansion of macro 'PRINTF' 12197 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); | ^~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectSlice.cpp -o build/temp.linux-x86_64-3.11/layer2/ObjectSlice.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp layer3/Executive.cpp: In function 'int ExecutiveSetSettingFromString(PyMOLGlobals*, int, const char*, const char*, int, int, int)': layer3/Executive.cpp:12129:36: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12129 | " Setting: %s set for %d atoms in object \"%s\".\n", | ^~ 12130 | name, op.i4, rec->obj->Name ENDF(G); | ~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output between 42 and 561 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12128:23: note: in expansion of macro 'PRINTF' 12128 | PRINTF | ^~~~~~ layer3/Executive.cpp:12097:32: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12097 | " Setting: %s set to %s in %d objects, state %d.\n", | ^~ 12098 | name, value2, nObj, state + 1 ENDF(G); | ~~~~ layer3/Executive.cpp:12097:21: note: directive argument in the range [1, 2147483647] 12097 | " Setting: %s set to %s in %d objects, state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12097:21: note: directive argument in the range [1, 2147483647] layer0/Feedback.h:282:53: note: 'snprintf' output between 43 and 1338 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12096:19: note: in expansion of macro 'PRINTF' 12096 | PRINTF | ^~~~~~ layer3/Executive.cpp:12094:32: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12094 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G); | ^~ ~~~~ layer3/Executive.cpp:12094:21: note: directive argument in the range [1, 2147483647] 12094 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output between 34 and 1320 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12093:19: note: in expansion of macro 'PRINTF' 12093 | PRINTF | ^~~~~~ layer3/Executive.cpp:12161:36: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12161 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~ 12162 | name, value2, rec->obj->Name, state + 1 ENDF(G); | ~~~~ layer3/Executive.cpp:12161:25: note: directive argument in the range [1, 2147483647] 12161 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output between 43 and 1584 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12160:23: note: in expansion of macro 'PRINTF' 12160 | PRINTF | ^~~~~~ layer3/Executive.cpp:12153:36: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12153 | " Setting: %s set to %s in object \"%s\".\n", | ^~ 12154 | name, value2, rec->obj->Name ENDF(G); | ~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output between 34 and 1566 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12152:23: note: in expansion of macro 'PRINTF' 12152 | PRINTF | ^~~~~~ layer3/Executive.cpp:12057:29: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12057 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); | ^~ ~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output between 21 and 1298 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12057:11: note: in expansion of macro 'PRINTF' 12057 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); | ^~~~~~ layer3/Executive.cpp: In function 'bool ExecutiveSetSymmetry(PyMOLGlobals*, pymol::zstring_view, int, const CSymmetry&, bool)': layer3/Executive.cpp:5951:43: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 202 [-Wformat-truncation=] 5951 | " %s-Details: Updated symmetry for '%s'\n", __func__, obj->Name ENDFB(G); | ^~ layer0/Feedback.h:274:15: note: 'snprintf' output between 56 and 311 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:5950:7: note: in expansion of macro 'PRINTFB' 5950 | PRINTFB(G, FB_Executive, FB_Details) | ^~~~~~~ layer3/Executive.cpp:5942:46: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 199 [-Wformat-truncation=] 5942 | " %s-Warning: Cannot set symmetry for '%s' (type %s)\n", __func__, | ^~ layer0/Feedback.h:274:15: note: 'snprintf' output between 84 and 339 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:5941:7: note: in expansion of macro 'PRINTFB' 5941 | PRINTFB(G, FB_Executive, FB_Warnings) | ^~~~~~~ layer2/ObjectSlice.cpp: In member function 'virtual void ObjectSlice::update()': layer2/ObjectSlice.cpp:639:42: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=] 639 | "ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName | ^~ In file included from layer1/Ortho.h:32, from layer1/Scene.h:23, from layer2/ObjectSlice.cpp:34: layer0/Feedback.h:274:15: note: 'snprintf' output between 51 and 306 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectSlice.cpp:638:9: note: in expansion of macro 'PRINTFB' 638 | PRINTFB(I->G, FB_ObjectSlice, FB_Errors) | ^~~~~~~ layer2/ObjectSlice.cpp:650:39: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=] 650 | " ObjectSlice: updating \"%s\".\n", I->Name ENDFB(I->G); | ^~ layer0/Feedback.h:274:15: note: 'snprintf' output between 28 and 283 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer2/ObjectSlice.cpp:649:11: note: in expansion of macro 'PRINTFB' 649 | PRINTFB(I->G, FB_ObjectSlice, FB_Blather) | ^~~~~~~ layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveBond(PyMOLGlobals*, const char*, const char*, int, int, int, pymol::zstring_view)': layer3/Executive.cpp:9358:53: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 214 and 224 [-Wformat-truncation=] 9358 | " Bond: %d bonds added to model \"%s\".\n", cnt, rec->obj->Name | ^~ layer0/Feedback.h:274:15: note: 'snprintf' output between 35 and 300 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:9357:17: note: in expansion of macro 'PRINTFB' 9357 | PRINTFB(G, FB_Editor, FB_Actions) | ^~~~~~~ layer3/Executive.cpp:9371:67: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=] 9371 | " Valence: %d bond valences adjusted in model \"%s\".\n", cnt, | ^~ layer0/Feedback.h:274:15: note: 'snprintf' output between 49 and 314 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:9370:17: note: in expansion of macro 'PRINTFB' 9370 | PRINTFB(G, FB_Editor, FB_Actions) | ^~~~~~~ layer3/Executive.cpp:9383:59: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 208 and 218 [-Wformat-truncation=] 9383 | " Unbond: %d bonds removed from model \"%s\".\n", | ^~ layer0/Feedback.h:274:15: note: 'snprintf' output between 41 and 306 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:9382:17: note: in expansion of macro 'PRINTFB' 9382 | PRINTFB(G, FB_Editor, FB_Actions) | ^~~~~~~ layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveUnsetSetting(PyMOLGlobals*, int, pymol::zstring_view, int, int, int)': layer3/Executive.cpp:12338:68: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 215 [-Wformat-truncation=] 12338 | " Setting: %s unset for %d atoms in object \"%s\".\n", | ^~ layer0/Feedback.h:282:53: note: 'snprintf' output 44 or more bytes (assuming 299) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12337:21: note: in expansion of macro 'PRINTF' 12337 | PRINTF | ^~~~~~ layer3/Executive.cpp:12360:57: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=] 12360 | " Setting: %s unset in object \"%s\", state %d.\n", | ^~ layer3/Executive.cpp:12360:25: note: directive argument in the range [1, 2147483647] 12360 | " Setting: %s unset in object \"%s\", state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output 41 or more bytes (assuming 305) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12359:23: note: in expansion of macro 'PRINTF' 12359 | PRINTF | ^~~~~~ layer3/Executive.cpp:12354:57: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=] 12354 | " Setting: %s unset in object \"%s\".\n", | ^~ layer0/Feedback.h:282:53: note: 'snprintf' output 32 or more bytes (assuming 287) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:12353:23: note: in expansion of macro 'PRINTF' 12353 | PRINTF | ^~~~~~ layer3/Selector.cpp: In function 'int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)': layer3/Selector.cpp:1722:70: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=] 1722 | " AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n", | ^~ In file included from /usr/include/stdio.h:906, from /usr/include/c++/12/cstdio:42, from /usr/include/c++/12/ext/string_conversions.h:43, from /usr/include/c++/12/bits/basic_string.h:3960, from /usr/include/c++/12/string:53, from layer3/Selector.cpp:20: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)' at layer3/Selector.cpp:1721:19: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 59 and 324 bytes into a destination of size 255 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'void ExecutiveManageObject(PyMOLGlobals*, pymol::CObject*, int, int)': layer3/Executive.cpp:14447:37: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=] 14447 | " Executive-Warning: name \"%s\" collides with a selection language keyword.\n", | ^~ layer0/Feedback.h:274:15: note: 'snprintf' output between 73 and 328 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:14446:7: note: in expansion of macro 'PRINTFB' 14446 | PRINTFB(G, FB_Executive, FB_Warnings) | ^~~~~~~ layer3/Executive.cpp:14442:36: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] 14442 | " Executive: object name \"%s\" is illegal -- renamed to 'all_'.\n", obj->Name | ^~ layer0/Feedback.h:274:15: note: 'snprintf' output between 61 and 316 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:14441:7: note: in expansion of macro 'PRINTFB' 14441 | PRINTFB(G, FB_Executive, FB_Warnings) | ^~~~~~~ layer3/Executive.cpp:14473:11: warning: 'char* strcpy(char*, const char*)' writing between 1 and 256 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=] 14473 | strcpy(rec->name, obj->Name); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In member function 'virtual int CExecutive::drag(int, int, int)': layer3/Executive.cpp:15471:55: warning: '%s' directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 15471 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n", | ^~ 15472 | order_input, (location == -2) ? "upper" : "current"); | ~~~~~~~~~~~ layer3/Executive.cpp:15471:26: note: 'sprintf' output between 32 and 1057 bytes into a destination of size 1024 15471 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n", | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 15472 | order_input, (location == -2) ? "upper" : "current"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveSetSetting(PyMOLGlobals*, int, PyObject*, pymol::zstring_view, int, int, int)': layer3/Executive.cpp:11877:70: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=] 11877 | " Setting: %s set for %d atoms in object \"%s\".\n", | ^~ layer0/Feedback.h:282:53: note: 'snprintf' output 42 or more bytes (assuming 297) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11876:25: note: in expansion of macro 'PRINTF' 11876 | PRINTF | ^~~~~~ layer3/Executive.cpp:11877:70: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=] 11877 | " Setting: %s set for %d atoms in object \"%s\".\n", | ^~ layer0/Feedback.h:282:53: note: 'snprintf' output 42 or more bytes (assuming 297) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11876:25: note: in expansion of macro 'PRINTF' 11876 | PRINTF | ^~~~~~ layer3/Executive.cpp:11788:42: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11788 | " Setting: %s set to %s in %d objects, state %d.\n", | ^~ 11789 | name, value, nObj, state + 1 ENDF(G); | ~~~~~ layer3/Executive.cpp:11788:21: note: directive argument in the range [1, 2147483647] 11788 | " Setting: %s set to %s in %d objects, state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:11788:21: note: directive argument in the range [1, 2147483647] layer0/Feedback.h:282:53: note: 'snprintf' output 43 or more bytes (assuming 1084) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11787:19: note: in expansion of macro 'PRINTF' 11787 | PRINTF | ^~~~~~ layer3/Executive.cpp:11785:42: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11785 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G); | ^~ ~~~~~ layer3/Executive.cpp:11785:21: note: directive argument in the range [1, 2147483647] 11785 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output 34 or more bytes (assuming 1066) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11784:19: note: in expansion of macro 'PRINTF' 11784 | PRINTF | ^~~~~~ layer3/Executive.cpp:11909:46: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11909 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~ 11910 | name, value, rec->obj->Name, state + 1 ENDF(G); | ~~~~~ layer3/Executive.cpp:11909:25: note: directive argument in the range [1, 2147483647] 11909 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output 43 or more bytes (assuming 1330) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11908:23: note: in expansion of macro 'PRINTF' 11908 | PRINTF | ^~~~~~ layer3/Executive.cpp:11902:46: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11902 | " Setting: %s set to %s in object \"%s\".\n", | ^~ 11903 | name, value, rec->obj->Name ENDF(G); | ~~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output 34 or more bytes (assuming 1312) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11901:23: note: in expansion of macro 'PRINTF' 11901 | PRINTF | ^~~~~~ layer3/Executive.cpp:11744:39: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11744 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G); | ^~ ~~~~~ layer0/Feedback.h:282:53: note: 'snprintf' output 21 or more bytes (assuming 1044) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:11744:11: note: in expansion of macro 'PRINTF' 11744 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G); | ^~~~~~ layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveCopy(PyMOLGlobals*, const char*, const char*, int)': layer3/Executive.cpp:9665:25: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=] 9665 | " Executive: object %s created.\n", oDst->Name ENDFB(G); | ^~ layer0/Feedback.h:274:15: note: 'snprintf' output between 30 and 285 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:9664:3: note: in expansion of macro 'PRINTFB' 9664 | PRINTFB(G, FB_Executive, FB_Actions) | ^~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveGroup(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, int, int)': layer3/Executive.cpp:2259:40: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] 2259 | " Executive: adding '%s' to group '%s'.\n", rec.name, rec.group_name | ^~ layer0/Feedback.h:274:15: note: 'snprintf' output between 36 and 546 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:2258:17: note: in expansion of macro 'PRINTFB' 2258 | PRINTFB(G, FB_Executive, FB_Actions) | ^~~~~~~ layer3/Executive.cpp: In function 'pymol::Result > ExecutiveSetName(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, bool)': layer3/Executive.cpp:3523:41: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 222 [-Wformat-truncation=] 3523 | " Warning: Invalid characters in '%s' have been replaced or stripped\n", | ^~ 3524 | name ENDFB(G); | ~~~~ layer0/Feedback.h:274:15: note: 'snprintf' output between 67 and 322 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:3522:5: note: in expansion of macro 'PRINTFB' 3522 | PRINTFB(G, FB_Executive, FB_Warnings) | ^~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)': layer3/Executive.cpp:5070:57: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=] 5070 | " Executive: skipping unrecognized object \"%s\" of type %d.\n", | ^~ In function 'int ExecutiveSetNamedEntries(PyMOLGlobals*, PyObject*, int, int, int)', inlined from 'int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)' at layer3/Executive.cpp:5696:38: layer0/Feedback.h:274:15: note: 'snprintf' output between 56 and 321 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:5069:11: note: in expansion of macro 'PRINTFB' 5069 | PRINTFB(G, FB_Executive, FB_Errors) | ^~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)': layer3/Executive.cpp:5095:58: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 210 [-Wformat-truncation=] 5095 | "ExectiveSetNamedEntries-Error: after object \"%s\".\n", rec->name ENDFB(G); | ^~ In function 'int ExecutiveSetNamedEntries(PyMOLGlobals*, PyObject*, int, int, int)', inlined from 'int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)' at layer3/Executive.cpp:5696:38: layer0/Feedback.h:274:15: note: 'snprintf' output between 49 and 304 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ layer3/Executive.cpp:5094:9: note: in expansion of macro 'PRINTFB' 5094 | PRINTFB(G, FB_Executive, FB_Errors) | ^~~~~~~ x86_64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.11/build/generated/ShaderText.o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-x86_64-3.11/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o 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build/temp.linux-x86_64-3.11/layer2/ObjectGadget.o build/temp.linux-x86_64-3.11/layer2/ObjectGadgetRamp.o build/temp.linux-x86_64-3.11/layer2/ObjectGroup.o build/temp.linux-x86_64-3.11/layer2/ObjectMap.o build/temp.linux-x86_64-3.11/layer2/ObjectMesh.o build/temp.linux-x86_64-3.11/layer2/ObjectMolecule.o build/temp.linux-x86_64-3.11/layer2/ObjectMolecule2.o build/temp.linux-x86_64-3.11/layer2/ObjectMolecule3.o build/temp.linux-x86_64-3.11/layer2/ObjectSlice.o build/temp.linux-x86_64-3.11/layer2/ObjectSurface.o build/temp.linux-x86_64-3.11/layer2/ObjectVolume.o build/temp.linux-x86_64-3.11/layer2/RepAngle.o build/temp.linux-x86_64-3.11/layer2/RepCartoon.o build/temp.linux-x86_64-3.11/layer2/RepCylBond.o build/temp.linux-x86_64-3.11/layer2/RepDihedral.o build/temp.linux-x86_64-3.11/layer2/RepDistDash.o build/temp.linux-x86_64-3.11/layer2/RepDistLabel.o build/temp.linux-x86_64-3.11/layer2/RepDot.o build/temp.linux-x86_64-3.11/layer2/RepEllipsoid.o build/temp.linux-x86_64-3.11/layer2/RepLabel.o build/temp.linux-x86_64-3.11/layer2/RepMesh.o build/temp.linux-x86_64-3.11/layer2/RepNonbonded.o build/temp.linux-x86_64-3.11/layer2/RepNonbondedSphere.o build/temp.linux-x86_64-3.11/layer2/RepRibbon.o build/temp.linux-x86_64-3.11/layer2/RepSphere.o build/temp.linux-x86_64-3.11/layer2/RepSphereGenerate.o build/temp.linux-x86_64-3.11/layer2/RepSphereImmediate.o build/temp.linux-x86_64-3.11/layer2/RepSurface.o build/temp.linux-x86_64-3.11/layer2/RepWireBond.o build/temp.linux-x86_64-3.11/layer2/Sculpt.o build/temp.linux-x86_64-3.11/layer2/SculptCache.o build/temp.linux-x86_64-3.11/layer2/SideChainHelper.o build/temp.linux-x86_64-3.11/layer2/VFont.o build/temp.linux-x86_64-3.11/layer3/AtomIterators.o build/temp.linux-x86_64-3.11/layer3/CifDataValueFormatter.o build/temp.linux-x86_64-3.11/layer3/Editor.o build/temp.linux-x86_64-3.11/layer3/Executive.o build/temp.linux-x86_64-3.11/layer3/ExecutivePython.o build/temp.linux-x86_64-3.11/layer3/MaeExportHelpers.o build/temp.linux-x86_64-3.11/layer3/MoleculeExporter.o build/temp.linux-x86_64-3.11/layer3/MovieScene.o build/temp.linux-x86_64-3.11/layer3/PlugIOManager.o build/temp.linux-x86_64-3.11/layer3/RingFinder.o build/temp.linux-x86_64-3.11/layer3/Seeker.o build/temp.linux-x86_64-3.11/layer3/Selector.o build/temp.linux-x86_64-3.11/layer3/SelectorTmp.o build/temp.linux-x86_64-3.11/layer3/SpecRec.o build/temp.linux-x86_64-3.11/layer3/SpecRecSpecial.o build/temp.linux-x86_64-3.11/layer4/Cmd.o build/temp.linux-x86_64-3.11/layer4/Menu.o build/temp.linux-x86_64-3.11/layer4/PopUp.o build/temp.linux-x86_64-3.11/layer5/PyMOL.o build/temp.linux-x86_64-3.11/layer5/TestPyMOL.o build/temp.linux-x86_64-3.11/layer5/main.o build/temp.linux-x86_64-3.11/ov/src/OVContext.o build/temp.linux-x86_64-3.11/ov/src/OVHeap.o build/temp.linux-x86_64-3.11/ov/src/OVHeapArray.o build/temp.linux-x86_64-3.11/ov/src/OVLexicon.o build/temp.linux-x86_64-3.11/ov/src/OVOneToAny.o build/temp.linux-x86_64-3.11/ov/src/OVOneToOne.o build/temp.linux-x86_64-3.11/ov/src/OVRandom.o build/temp.linux-x86_64-3.11/ov/src/ov_utility.o -lpng -lfreetype -lxml2 -lGL -lGLEW -lnetcdf -o /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/_cmd.cpython-311-x86_64-linux-gnu.so -fopenmp building 'chempy.champ._champ' extension creating build/temp.linux-x86_64-3.11/contrib/champ x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/champ.c -o build/temp.linux-x86_64-3.11/contrib/champ/champ.o x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/champ_module.c -o build/temp.linux-x86_64-3.11/contrib/champ/champ_module.o x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/chiral.c -o build/temp.linux-x86_64-3.11/contrib/champ/chiral.o x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/err2.c -o build/temp.linux-x86_64-3.11/contrib/champ/err2.o x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/feedback2.c -o build/temp.linux-x86_64-3.11/contrib/champ/feedback2.o x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/list.c -o build/temp.linux-x86_64-3.11/contrib/champ/list.o x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/os_memory.c -o build/temp.linux-x86_64-3.11/contrib/champ/os_memory.o x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/sort.c -o build/temp.linux-x86_64-3.11/contrib/champ/sort.o x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/strblock.c -o build/temp.linux-x86_64-3.11/contrib/champ/strblock.o x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/vla.c -o build/temp.linux-x86_64-3.11/contrib/champ/vla.o contrib/champ/os_memory.c: In function 'OSMemoryZero': contrib/champ/os_memory.c:55:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 55 | while(count&&(((int)p)&mask)) { | ^ contrib/champ/os_memory.c: In function 'OSMemoryHashAdd': contrib/champ/os_memory.c:137:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 137 | hash=(int)rec; | ^ contrib/champ/os_memory.c: In function 'OSMemoryHashRemove': contrib/champ/os_memory.c:150:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 150 | hash=(int)rec; | ^ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-2.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.11/contrib/champ/champ.o build/temp.linux-x86_64-3.11/contrib/champ/champ_module.o build/temp.linux-x86_64-3.11/contrib/champ/chiral.o build/temp.linux-x86_64-3.11/contrib/champ/err2.o build/temp.linux-x86_64-3.11/contrib/champ/feedback2.o build/temp.linux-x86_64-3.11/contrib/champ/list.o build/temp.linux-x86_64-3.11/contrib/champ/os_memory.o build/temp.linux-x86_64-3.11/contrib/champ/sort.o build/temp.linux-x86_64-3.11/contrib/champ/strblock.o build/temp.linux-x86_64-3.11/contrib/champ/vla.o -o /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/champ/_champ.cpython-311-x86_64-linux-gnu.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/pymol-2.5.0+dfsg' echo "FIXME: Test ends up with: AttributeError: module 'pymol' has no attribute 'start_pymol'" FIXME: Test ends up with: AttributeError: module 'pymol' has no attribute 'start_pymol' echo "Unfortunately upstream has removed the script that was used for testing from upstream source" Unfortunately upstream has removed the script that was used for testing from upstream source make[1]: Leaving directory '/build/reproducible-path/pymol-2.5.0+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_installdirs -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol /build/reproducible-path/pymol-2.5.0+dfsg/setup.py:9: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension running install running build running build_py running build_ext running install_lib creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11 creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/bmin copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/bmin/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/bmin copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/bmin/commands.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/bmin copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/bmin/realtime.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/bmin copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/bmin/state.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/bmin copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/bmin/util.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/bmin creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/champ copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/champ/_champ.cpython-311-x86_64-linux-gnu.so -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/champ copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/champ/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/champ copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/champ/amber99.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/champ copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/champ/assign.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/champ copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/champ/formal_charges.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/champ creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/fast copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/fast/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/fast creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/fragments copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/fragments/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/fragments creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/mmtf copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/mmtf/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/mmtf copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/mmtf/io.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/mmtf creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/tinker copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/tinker/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/tinker copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/tinker/amber.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/tinker copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/tinker/keyword.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/tinker copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/tinker/realtime.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/tinker copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/tinker/state.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/tinker copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/arc.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/bond_amber.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/bond_mmff.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/bonds.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/brick.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/cc1.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/charge.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/cif.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/cpv.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/dictdb.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/gamess1.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/gms.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/hetatm.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/io.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/lst.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/mae.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/map.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/mass.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/mmd.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/models.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/mol.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/mol2.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/neighbor.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/pdb.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/pkl.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/place.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/protein.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/protein_amber.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/protein_amber99.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/protein_mmff.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/protein_residues.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/sdf.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/solvate.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/water_amber.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/water_residues.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/chempy/xyz.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/askpartial.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/change_confirm.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/colors.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/create_shortcut.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/fetch.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/help_shortcut.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/load_aln.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/load_mae.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/load_map.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/load_mtz.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/load_traj.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/movieexport.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/pluginitem.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/pluginmanager.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/png.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/props.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/render.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/save_molecule.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/save_object.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/shortcut_menu.ui -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/forms/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/syntax copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/syntax/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/syntax copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/syntax/pml.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/syntax copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/syntax/pmlparser.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/syntax copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/syntax/python.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/syntax copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/TextEditor.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/advanced_settings_gui.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/builder.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/file_dialogs.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/keymapping.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/mimic_pmg_tk.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/mimic_tk.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/properties_dialog.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/pymol_gl_widget.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/pymol_qt_gui.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/shortcut_menu_gui.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_qt/volume.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/skins creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/skins/demo copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/skins/demo/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/skins/demo creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/skins/normal copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/skins/normal/ModalWindow.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/skins/normal copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/skins/normal/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/skins/normal copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/skins/normal/builder.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/skins/normal copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/skins/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/skins creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/startup copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/startup/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/startup copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/ColorEditor.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/Demo.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/PMGApp.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/PyMOLMapLoad.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/SetEditor.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/Setting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/TextEditor.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pmg_tk/volume.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/_cmd.cpython-311-x86_64-linux-gnu.so -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/Qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/Qt/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/Qt copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/Qt/utils.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/Qt creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/plugins copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/plugins/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/plugins copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/plugins/installation.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/plugins copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/plugins/legacysupport.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/plugins copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/plugins/managergui.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/plugins copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/plugins/managergui_qt.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/plugins copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/plugins/repository.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/plugins creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/stereochemistry copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/stereochemistry/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/stereochemistry creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/annotation.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/appearance.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/benchmark.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/box.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/charge.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/cleanup.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/command.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/demo.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/density.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/distance.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/dragging.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/filter.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/label.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/measurement.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/message.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/mutagenesis.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/nucmutagenesis.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/openvr.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/pair_fit.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/pseudoatom.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/renaming.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/sculpting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/security.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/stereodemo.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizard/toggle.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/__main__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/_gui.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/api.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/callback.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/cgo.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/checking.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/cmd.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/colorprinting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/colorramping.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/commanding.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/completing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/computing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/constants.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/constants_palette.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/controlling.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/creating.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/diagnosing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/editing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/editor.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/experimenting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/exporting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/externing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/feedingback.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/fitting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/gui.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/headering.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/helping.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/importing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/internal.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/invocation.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/keyboard.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/keywords.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/lazyio.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/locking.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/menu.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/monitoring.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/morphing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/movie.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/moving.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/mpeg_encode.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/parser.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/parsing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/preset.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/pymolhttpd.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/querying.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/rpc.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/save_shortcut.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/selecting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/selector.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/seqalign.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/setting.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/shortcut.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/shortcut_dict.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/shortcut_manager.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/util.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/vfont.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/viewing.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/wizarding.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/xray.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/xwin.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/povray.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol2 copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol2/__init__.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol2 copying /build/reproducible-path/pymol-2.5.0+dfsg/.pybuild/cpython3_3.11_pymol/build/pymol2/cmd2.py -> /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol2 byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/bmin/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/bmin/commands.py to commands.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/bmin/realtime.py to realtime.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/bmin/state.py to state.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/bmin/util.py to util.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/champ/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/champ/amber99.py to amber99.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/champ/assign.py to assign.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/champ/formal_charges.py to formal_charges.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/fast/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/fragments/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/mmtf/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/mmtf/io.py to io.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/tinker/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/tinker/amber.py to amber.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/tinker/keyword.py to keyword.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/tinker/realtime.py to realtime.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/tinker/state.py to state.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/arc.py to arc.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/bond_amber.py to bond_amber.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/bond_mmff.py to bond_mmff.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/bonds.py to bonds.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/brick.py to brick.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/cc1.py to cc1.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/charge.py to charge.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/cif.py to cif.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/cpv.py to cpv.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/dictdb.py to dictdb.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/gamess1.py to gamess1.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/gms.py to gms.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/hetatm.py to hetatm.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/io.py to io.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/lst.py to lst.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/mae.py to mae.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/map.py to map.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/mass.py to mass.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/mmd.py to mmd.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/models.py to models.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/mol.py to mol.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/mol2.py to mol2.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/neighbor.py to neighbor.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/pdb.py to pdb.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/pkl.py to pkl.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/place.py to place.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/protein.py to protein.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/protein_amber.py to protein_amber.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/protein_amber99.py to protein_amber99.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/protein_mmff.py to protein_mmff.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/protein_residues.py to protein_residues.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/sdf.py to sdf.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/solvate.py to solvate.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/water_amber.py to water_amber.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/water_residues.py to water_residues.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/chempy/xyz.py to xyz.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/forms/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/syntax/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/syntax/pml.py to pml.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/syntax/pmlparser.py to pmlparser.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/syntax/python.py to python.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/TextEditor.py to TextEditor.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/advanced_settings_gui.py to advanced_settings_gui.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/builder.py to builder.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/file_dialogs.py to file_dialogs.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/keymapping.py to keymapping.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/mimic_tk.py to mimic_tk.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/properties_dialog.py to properties_dialog.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/pymol_qt_gui.py to pymol_qt_gui.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/shortcut_menu_gui.py to shortcut_menu_gui.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_qt/volume.py to volume.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/skins/demo/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/skins/normal/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/skins/normal/builder.py to builder.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/skins/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/startup/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/ColorEditor.py to ColorEditor.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/Demo.py to Demo.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/PMGApp.py to PMGApp.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/SetEditor.py to SetEditor.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/Setting.py to Setting.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/TextEditor.py to TextEditor.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pmg_tk/volume.py to volume.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/Qt/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/Qt/utils.py to utils.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/plugins/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/plugins/installation.py to installation.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/plugins/legacysupport.py to legacysupport.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/plugins/managergui.py to managergui.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/plugins/managergui_qt.py to managergui_qt.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/plugins/repository.py to repository.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/stereochemistry/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/annotation.py to annotation.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/appearance.py to appearance.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/benchmark.py to benchmark.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/box.py to box.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/charge.py to charge.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/cleanup.py to cleanup.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/command.py to command.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/demo.py to demo.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/density.py to density.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/distance.py to distance.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/dragging.py to dragging.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/filter.py to filter.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/label.py to label.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/measurement.py to measurement.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/message.py to message.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/mutagenesis.py to mutagenesis.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/nucmutagenesis.py to nucmutagenesis.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/openvr.py to openvr.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/pair_fit.py to pair_fit.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/pseudoatom.py to pseudoatom.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/renaming.py to renaming.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/sculpting.py to sculpting.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/security.py to security.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/stereodemo.py to stereodemo.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizard/toggle.py to toggle.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/__main__.py to __main__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/_gui.py to _gui.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/api.py to api.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/callback.py to callback.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/cgo.py to cgo.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/checking.py to checking.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/cmd.py to cmd.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/colorprinting.py to colorprinting.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/colorramping.py to colorramping.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/commanding.py to commanding.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/completing.py to completing.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/computing.py to computing.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/constants.py to constants.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/constants_palette.py to constants_palette.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/controlling.py to controlling.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/creating.py to creating.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/diagnosing.py to diagnosing.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/editing.py to editing.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/editor.py to editor.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/experimenting.py to experimenting.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/exporting.py to exporting.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/externing.py to externing.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/feedingback.py to feedingback.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/fitting.py to fitting.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/gui.py to gui.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/headering.py to headering.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/helping.py to helping.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/importing.py to importing.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/internal.py to internal.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/invocation.py to invocation.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/keyboard.py to keyboard.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/keywords.py to keywords.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/lazyio.py to lazyio.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/locking.py to locking.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/menu.py to menu.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/monitoring.py to monitoring.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/morphing.py to morphing.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/movie.py to movie.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/moving.py to moving.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/mpeg_encode.py to mpeg_encode.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/parser.py to parser.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/parsing.py to parsing.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/preset.py to preset.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/pymolhttpd.py to pymolhttpd.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/querying.py to querying.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/rpc.py to rpc.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/save_shortcut.py to save_shortcut.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/selecting.py to selecting.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/selector.py to selector.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/seqalign.py to seqalign.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/setting.py to setting.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/shortcut.py to shortcut.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/shortcut_dict.py to shortcut_dict.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/shortcut_manager.py to shortcut_manager.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/util.py to util.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/vfont.py to vfont.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/viewing.py to viewing.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/wizarding.py to wizarding.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/xray.py to xray.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/xwin.py to xwin.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/povray.py to povray.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol2/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol2/cmd2.py to cmd2.cpython-311.pyc running install_egg_info Writing /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/lib/python3.11/dist-packages/pymol-2.5.0.egg-info creating /build/reproducible-path/pymol-2.5.0+dfsg/debian/python3-pymol/usr/bin debian/rules override_dh_install-arch make[1]: Entering directory '/build/reproducible-path/pymol-2.5.0+dfsg' dh_numpy3 dh_install rm -rf debian/python*pymol/usr/bin make[1]: Leaving directory '/build/reproducible-path/pymol-2.5.0+dfsg' debian/rules override_dh_install-indep make[1]: Entering directory '/build/reproducible-path/pymol-2.5.0+dfsg' pdflatex -output-directory debian -jobname pymol-ref-card debian/pymolRef.tex This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./debian/pymolRef.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file pymol-ref-card.aux. Underfull \hbox (badness 10000) in paragraph at lines 78--79 [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (debian/pymol-ref-card.aux) kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tcrm0900 mkdir: cannot create directory '././nonexistent': Permission denied mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tcrm0900 This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm0900.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [27] [29]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txgen.mf Ok [100] [109] [98] [99] [108]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymbol.mf Ok [13] [18] [21] [22] [23] [24] [25] [26] [28] [31] [32] [36] [39] [44] [45] [46] [42] [47] [60] [61] [62] [77] [79] [87] [110] [91] [93] [94] [95] [96] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [171] [172] [173] [174] [175] [177] [176] [180] [181] [182] [183] [184] [187] [191] [214] [246]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txromod.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrsuper.mf Ok [185] [178] [179] [170] [186]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrfract.mf Ok [188] [189] [190]) ) ) ) (some charht values had to be adjusted by as much as 0.06744pt) Font metrics written on tcrm0900.tfm. Output written on tcrm0900.600gf (128 characters, 21392 bytes). Transcript written on tcrm0900.log. mktexpk: /tmp/texfonts/pk/ljfour/jknappen/ec/tcrm0900.600pk: successfully generated. ) (see the transcript file for additional information) Output written on debian/pymol-ref-card.pdf (2 pages, 108210 bytes). Transcript written on debian/pymol-ref-card.log. dh_install install -m 755 debian/pymol.launch debian/pymol/usr/bin/pymol make[1]: Leaving directory '/build/reproducible-path/pymol-2.5.0+dfsg' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_installmime -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/pymol-2.5.0+dfsg' dh_compress -Xpdb make[1]: Leaving directory '/build/reproducible-path/pymol-2.5.0+dfsg' dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz: debian/python3-pymol/usr/lib/python3/dist-packages/pymol/_cmd.cpython-311-x86_64-linux-gnu.so: DWARF compression not beneficial - old size 29487628 new size 29628203 dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package pymol: substitution variable ${python3:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'pymol' in '../pymol_2.5.0+dfsg-1_all.deb'. dpkg-deb: building package 'python3-pymol' in '../python3-pymol_2.5.0+dfsg-1_amd64.deb'. dpkg-deb: building package 'pymol-data' in '../pymol-data_2.5.0+dfsg-1_all.deb'. dpkg-deb: building package 'python3-pymol-dbgsym' in '../python3-pymol-dbgsym_2.5.0+dfsg-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../pymol_2.5.0+dfsg-1_amd64.buildinfo dpkg-genchanges --build=binary -O../pymol_2.5.0+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1314103 and its subdirectories I: Current time: Wed Jan 10 18:32:43 -12 2024 I: pbuilder-time-stamp: 1704954763 Thu Jan 11 06:32:44 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Thu Jan 11 06:32:44 UTC 2024 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Thu Jan 11 06:43:20 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Thu Jan 11 06:43:21 UTC 2024 I: pymol_2.5.0+dfsg-1_amd64.changes: Format: 1.8 Date: Wed, 15 Dec 2021 16:51:43 +0100 Source: pymol Binary: pymol pymol-data python3-pymol python3-pymol-dbgsym Architecture: all amd64 Version: 2.5.0+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Andreas Tille Description: pymol - Molecular Graphics System pymol-data - data files for PyMOL python3-pymol - Molecular Graphics System (Python 3 modules) Closes: 929700 Changes: pymol (2.5.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * debhelper-compat 13 (routine-update) * Remove trailing whitespace in debian/copyright (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * No tab in license text (routine-update) * Use secure URI in Homepage field. * Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP. * Apply multi-arch hints. + pymol-data: Add Multi-Arch: foreign. * Replace imp by importlib in wrapper script Closes: #929700 * Deactivate debian/patches/02_test-suite.patch since it is unused * There is no need to recreate debian/pymol.launch per package build time since we now stick to Python3 * Skip test importing.py * Sort testscript and print command before execution to simplify debugging of autopkgtest * Do not try to run upstream build-time testscript which was removed upstream (neither at build time nor in autopkgtest) * Exclude test /usr/share/pymol/examples/devel/importing.py which has some issue for the moment. Checksums-Sha1: ffcdb474a3c01d8579d1ebe3767788375f3f7bf8 1390160 pymol-data_2.5.0+dfsg-1_all.deb 8a75e554374b0a8b7f17b1348a0f2f640221781a 179564 pymol_2.5.0+dfsg-1_all.deb a6a043911b366de3a4ab81de0c612fe6621dcc93 12928 pymol_2.5.0+dfsg-1_amd64.buildinfo c036e2066b84505a3512829c9ee3aac6681d183e 19010728 python3-pymol-dbgsym_2.5.0+dfsg-1_amd64.deb 7dfb8515b103a097de8e1640413d45bc767255fa 3703888 python3-pymol_2.5.0+dfsg-1_amd64.deb Checksums-Sha256: bf3f5f21bd21ec7d2d54eba7903a516e605f9e11e45dfd8c79167cf732a14ad5 1390160 pymol-data_2.5.0+dfsg-1_all.deb e5d99a5a7859bb8293c429799431937e39036c9f958e6985765ace686b337ba3 179564 pymol_2.5.0+dfsg-1_all.deb a63b8ba6505c7445a4d3a69435cc009d70f4a2568364fbe564af82a6186e77cb 12928 pymol_2.5.0+dfsg-1_amd64.buildinfo 3466c3948508cf077833d968154c4e60fca3fb303ff8ee4e8ed59fc0949e5be1 19010728 python3-pymol-dbgsym_2.5.0+dfsg-1_amd64.deb f880ef8ada93f30a475b072bb527c19883b898aa78f55f2568f35d301534a6c8 3703888 python3-pymol_2.5.0+dfsg-1_amd64.deb Files: b96fa39a93f64f0e3505f006a35b5b78 1390160 science optional pymol-data_2.5.0+dfsg-1_all.deb 507be350c65d469c7aadc83d07134dd3 179564 science optional pymol_2.5.0+dfsg-1_all.deb cb5b33585785d21040c832d35ac621c8 12928 science optional pymol_2.5.0+dfsg-1_amd64.buildinfo 84c67af6af61298b07aad286825a8270 19010728 debug optional python3-pymol-dbgsym_2.5.0+dfsg-1_amd64.deb 5283e7c2262b0f1d02a581cfde161c80 3703888 python optional python3-pymol_2.5.0+dfsg-1_amd64.deb Thu Jan 11 06:43:22 UTC 2024 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.c3oqM1dM/pymol_2.5.0+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.c3oqM1dM/pymol_2.5.0+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.c3oqM1dM/pymol_2.5.0+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.c3oqM1dM/b1/pymol_2.5.0+dfsg-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.c3oqM1dM/b2/pymol_2.5.0+dfsg-1_amd64.changes ## close_archive (total time: 0.000s) 0.000s 22 calls diffoscope.comparators.xz.XzContainer 0.000s 16 calls diffoscope.comparators.tar.TarContainer 0.000s 12 calls diffoscope.comparators.deb.DebContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## command (total time: 1065.060s) 548.949s 1003 calls readelf 420.141s 121 calls diff 86.740s 209 calls objdump 3.915s 22 calls xz 3.451s 2 calls objcopy 1.811s 22 calls strings 0.032s 23 calls cmp (internal) 0.010s 4 calls cmp 0.010s 4 calls cmp (external) ## compare_files (cumulative) (total time: 7035.946s) 1251.839s 1 call abc.DotChangesFile 1251.465s 2 calls abc.DebFile 1250.643s 4 calls abc.XzFile 1248.094s 2 calls abc.DebDataTarFile 1245.991s 2 calls abc.ElfFile 772.749s 10 calls diffoscope.comparators.elf.ElfCodeSection 12.699s 33 calls diffoscope.comparators.elf.ElfSection 2.350s 3 calls diffoscope.comparators.elf.ElfStringSection 0.077s 2 calls abc.TarFile 0.015s 2 calls abc.Md5sumsFile 0.013s 1 call abc.TextFile 0.010s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection ## container_extract (total time: 5.156s) 3.916s 22 calls diffoscope.comparators.xz.XzContainer 0.908s 26 calls diffoscope.comparators.deb.DebContainer 0.316s 436 calls diffoscope.comparators.deb.DebTarContainer 0.016s 24 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 0.189s) 0.189s 16 calls linediff ## has_same_content_as (total time: 0.044s) 0.030s 2 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.006s 2 calls abc.DebDataTarFile 0.006s 4 calls abc.DebFile 0.001s 6 calls abc.TextFile 0.000s 4 calls abc.Md5sumsFile 0.000s 2 calls abc.ElfFile 0.000s 4 calls abc.XzFile 0.000s 33 calls diffoscope.comparators.elf.ElfSection 0.000s 2 calls abc.TarFile 0.000s 1 call abc.DotChangesFile 0.000s 10 calls diffoscope.comparators.elf.ElfCodeSection 0.000s 3 calls diffoscope.comparators.elf.ElfStringSection 0.000s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection ## main (total time: 1252.678s) 1252.677s 2 calls outputs 0.001s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 22 calls diffoscope.comparators.xz.XzContainer 0.000s 16 calls diffoscope.comparators.tar.TarContainer 0.000s 12 calls diffoscope.comparators.deb.DebContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 0.354s) 0.325s 1 call html 0.028s 1 call text 0.001s 1 call json ## recognizes (total time: 3.247s) 1.538s 1004 calls diffoscope.comparators.utils.archive.ArchiveMember 0.415s 2052 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.379s 432 calls diffoscope.comparators.debian.DebControlMember 0.378s 726 calls diffoscope.comparators.elf.ElfSection 0.259s 220 calls diffoscope.comparators.elf.ElfCodeSection 0.223s 12 calls diffoscope.comparators.binary.FilesystemFile 0.028s 66 calls diffoscope.comparators.elf.ElfStringSection 0.026s 22 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.000s 32 calls abc.Md5sumsFile 0.000s 10 calls abc.DotChangesFile 0.000s 8 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink ## specialize (total time: 1.183s) 1.183s 74 calls specialize Thu Jan 11 07:04:15 UTC 2024 E: pymol failed to build reproducibly in bookworm on amd64. Thu Jan 11 07:04:15 UTC 2024 E: diffoscope 240 found issues, please check https://tests.reproducible-builds.org/debian/dbd/bookworm/amd64/pymol_2.5.0+dfsg-1.diffoscope.html Thu Jan 11 07:04:17 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Jan 11 07:04:17 UTC 2024 I: Submitting 16K b1/pymol_2.5.0+dfsg-1_amd64.buildinfo.asc Thu Jan 11 07:04:18 UTC 2024 I: Submitting 16K b2/pymol_2.5.0+dfsg-1_amd64.buildinfo.asc Thu Jan 11 07:04:19 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jan 11 07:04:19 UTC 2024 I: Done submitting .buildinfo files. Thu Jan 11 07:04:19 UTC 2024 I: Removing signed pymol_2.5.0+dfsg-1_amd64.buildinfo.asc files: removed './b1/pymol_2.5.0+dfsg-1_amd64.buildinfo.asc' removed './b2/pymol_2.5.0+dfsg-1_amd64.buildinfo.asc'