Thu Apr 20 15:02:42 UTC 2023 I: starting to build metaphlan/bookworm/amd64 on jenkins on '2023-04-20 15:02' Thu Apr 20 15:02:42 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_23/13720/console.log Thu Apr 20 15:02:42 UTC 2023 I: Downloading source for bookworm/metaphlan=4.0.4-1 --2023-04-20 15:02:42-- http://cdn-fastly.deb.debian.org/debian/pool/main/m/metaphlan/metaphlan_4.0.4-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2047 (2.0K) [text/prs.lines.tag] Saving to: ‘metaphlan_4.0.4-1.dsc’ 0K . 100% 99.2M=0s 2023-04-20 15:02:42 (99.2 MB/s) - ‘metaphlan_4.0.4-1.dsc’ saved [2047/2047] Thu Apr 20 15:02:42 UTC 2023 I: metaphlan_4.0.4-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: metaphlan Binary: metaphlan Architecture: all Version: 4.0.4-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/biobakery/MetaPhlAn Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/metaphlan Vcs-Git: https://salsa.debian.org/med-team/metaphlan.git Build-Depends: debhelper-compat (= 13), python3, dh-python, pandoc, bowtie2, python3-setuptools, python3-biopython Package-List: metaphlan deb science optional arch=all Checksums-Sha1: 6155334673fac2ac7b4957019f7f59438e5c0042 1891888 metaphlan_4.0.4.orig.tar.gz 42359168a4bd3c44441da28cad4ce600270bc190 458252 metaphlan_4.0.4-1.debian.tar.xz Checksums-Sha256: 3eccd2d76fd137cd113fb35700452aa215b5f0af32f4e1173c1db6366d0ac304 1891888 metaphlan_4.0.4.orig.tar.gz e70a8a0acf7e032cf217dadf9b8312ba40b4be3f344daae1fc80b8bb3fadb2a7 458252 metaphlan_4.0.4-1.debian.tar.xz Files: 3d9fb1e382d01e6f95879a05f449d364 1891888 metaphlan_4.0.4.orig.tar.gz 43d9caf26dd36d38b5653efd77be7d54 458252 metaphlan_4.0.4-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPadA8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGfeA//eiKVPU5YiIy5zNhXLGq0ZALV2Uw/vwdq xY7TBN8EAuI3bVDamCRceM6UWYy0Hl+f1SY+NJ6CWHw87G9q7TAwDRHk0lFuAC6s GsjdcvxPM0xGu3ViUsVgiOGYVQS5Z4Rh1ZDJjaowU6JGW7yh7qGbS+zFh/WHUQRS xpkjviaQTK/0ZpTU/2pFtnsG4E9qZ7O1MC08oKByMxPsozTtYHA/hdSx5+iu/pl6 S1/WQ0qknq0FvozW1ts1IaY+D9+viAX+NKnOxz04n8Gnp8TQOIH97b/MKUGPc/bK +gUJ03qH4iOSReCJYHwi7Wz8+Cg8r0HIMhO9LaoWi/OpHXZLAI8FbFxkUwpl6fFq 7T0U7T6wbhMOedtNviXG/pM9Trvy8RoFmCfMwwFjnutzaL9XLqEoErCHcQKji/sk OBa+kIOTnSE7SFFDw+muKgBViF1HIwJ9zIUeVrKwIbvIeAXloQzuvYy2KdCZm9LR D9jw+ZhKyVjlDvfQ0BgRbkwqY/gMDiC7ffJ4KqWzE/sKDBmY6FwTQxo42BXnImmv tqM/DMsXjOUxDO8yCDl8GbEQttZc91oeQY7BtL4jMjgqIP6RqSc7/7vU6DKsyQUv cyLh0Ei86Cov1UUBwSLHHJx4Xi9HMXI6ljbveGefmaaKKuzxrsyWPsf2qh+c9Equ gRgrrCFC7yI= =Uzhz -----END PGP SIGNATURE----- Thu Apr 20 15:02:42 UTC 2023 I: Checking whether the package is not for us Thu Apr 20 15:02:42 UTC 2023 I: Starting 1st build on remote node ionos11-amd64.debian.net. Thu Apr 20 15:02:42 UTC 2023 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Thu Apr 20 15:05:35 UTC 2023 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Apr 20 03:02:44 -12 2023 I: pbuilder-time-stamp: 1682002964 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [metaphlan_4.0.4-1.dsc] I: copying [./metaphlan_4.0.4.orig.tar.gz] I: copying [./metaphlan_4.0.4-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Feb 1 02:15:43 2023 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./metaphlan_4.0.4-1.dsc: no acceptable signature found dpkg-source: info: extracting metaphlan in metaphlan-4.0.4 dpkg-source: info: unpacking metaphlan_4.0.4.orig.tar.gz dpkg-source: info: unpacking metaphlan_4.0.4-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2227116/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='6910ff9e194e427fad03f9c5db8ffd9d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2227116' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.MGmp9Pn0/pbuilderrc_CWWG --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.MGmp9Pn0/b1 --logfile b1/build.log metaphlan_4.0.4-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Feb 12 08:05 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Feb 12 08:05 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 04:31 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar -rwxr-xr-x 1 root root 14520 Nov 2 04:31 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/2227116/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3, dh-python, pandoc, bowtie2, python3-setuptools, python3-biopython dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on pandoc; however: Package pandoc is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bowtie2{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} liblerc4{a} liblua5.3-0{a} libmagic-mgc{a} libmagic1{a} libopenjp2-7{a} libpipeline1{a} libpng16-16{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libraqm0{a} libreadline8{a} libsub-override-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} libyaml-0-2{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} pandoc{a} pandoc-data{a} po-debconf{a} python3{a} python3-biopython{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-renderpm{a} python3-reportlab{a} python3-reportlab-accel{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile shared-mime-info wget xdg-user-dirs 0 packages upgraded, 93 newly installed, 0 to remove and 0 not upgraded. Need to get 78.5 MB of archives. After unpacking 372 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 mailcap all 3.70+nmu1 [32.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 mime-support all 3.66 [10.9 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 13 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 sgml-base all 1.31 [15.4 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 bowtie2 amd64 2.5.0-3+b2 [1409 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 38 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.1+b3 [687 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-2 [131 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130 [104 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 libfontenc1 amd64 1:1.1.4-1 [24.3 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-4 [399 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 fonts-urw-base35 all 20200910-7 [10.8 MB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 libimagequant0 amd64 2.17.0-1 [32.5 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 liblua5.3-0 amd64 5.3.6-2 [123 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-1+b1 [189 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 libraqm0 amd64 0.7.0-4.1 [10.6 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.1 [285 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-5 [316 kB] Get: 76 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.4-0.1 [99.2 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.4-0.1 [109 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 pandoc-data all 2.17.1.1-1.1 [417 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 pandoc amd64 2.17.1.1-1.1 [21.3 MB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 85 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 python3-renderpm amd64 3.6.12-1+b1 [79.2 kB] Get: 87 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab-accel amd64 3.6.12-1+b1 [38.6 kB] Get: 88 http://deb.debian.org/debian bookworm/main amd64 python3-pil amd64 9.4.0-1.1+b1 [472 kB] Get: 89 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab all 3.6.12-1 [564 kB] Get: 90 http://deb.debian.org/debian bookworm/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get: 91 http://deb.debian.org/debian bookworm/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 92 http://deb.debian.org/debian bookworm/main amd64 python3-biopython amd64 1.80+dfsg-4+b1 [1593 kB] Get: 93 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB] Fetched 78.5 MB in 1s (61.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19912 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_amd64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../2-mailcap_3.70+nmu1_all.deb ... Unpacking mailcap (3.70+nmu1) ... Selecting previously unselected package mime-support. Preparing to unpack .../3-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../5-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.2-6_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.2-6_amd64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... 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Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../04-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../07-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.38.1-5+b1_amd64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../10-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.11.2-2_amd64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... 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Preparing to unpack .../22-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../23-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../24-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../25-libelf1_0.188-2.1_amd64.deb ... Unpacking libelf1:amd64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../26-dwz_0.15-1_amd64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../27-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../28-libxml2_2.9.14+dfsg-1.1+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.1+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.21-12_amd64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../33-python3-lib2to3_3.11.2-2_all.deb ... Unpacking python3-lib2to3 (3.11.2-2) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../34-python3-distutils_3.11.2-2_all.deb ... Unpacking python3-distutils (3.11.2-2) ... Selecting previously unselected package dh-python. Preparing to unpack .../35-dh-python_5.20230130_all.deb ... Unpacking dh-python (5.20230130) ... Selecting previously unselected package libfontenc1:amd64. Preparing to unpack .../36-libfontenc1_1%3a1.1.4-1_amd64.deb ... Unpacking libfontenc1:amd64 (1:1.1.4-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../37-libbrotli1_1.0.9-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b6) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../38-libpng16-16_1.6.39-2_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.39-2) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../39-libfreetype6_2.12.1+dfsg-4_amd64.deb ... Unpacking libfreetype6:amd64 (2.12.1+dfsg-4) ... Selecting previously unselected package x11-common. Preparing to unpack .../40-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../41-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../42-xfonts-utils_1%3a7.7+6_amd64.deb ... Unpacking xfonts-utils (1:7.7+6) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../43-fonts-urw-base35_20200910-7_all.deb ... Unpacking fonts-urw-base35 (20200910-7) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../44-libblas3_3.11.0-2_amd64.deb ... Unpacking libblas3:amd64 (3.11.0-2) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../45-libbsd0_0.11.7-2_amd64.deb ... Unpacking libbsd0:amd64 (0.11.7-2) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../46-libdeflate0_1.14-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.14-1) ... Selecting previously unselected package libfribidi0:amd64. Preparing to unpack .../47-libfribidi0_1.0.8-2.1_amd64.deb ... Unpacking libfribidi0:amd64 (1.0.8-2.1) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../48-libgfortran5_12.2.0-14_amd64.deb ... Unpacking libgfortran5:amd64 (12.2.0-14) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../49-libglib2.0-0_2.74.6-2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.74.6-2) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../50-libgraphite2-3_1.3.14-1_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.14-1) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../51-libharfbuzz0b_6.0.0+dfsg-3_amd64.deb ... Unpacking libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Selecting previously unselected package libimagequant0:amd64. Preparing to unpack .../52-libimagequant0_2.17.0-1_amd64.deb ... Unpacking libimagequant0:amd64 (2.17.0-1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../53-libjbig0_2.1-6.1_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6.1) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../54-libjpeg62-turbo_1%3a2.1.5-2_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.5-2) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../55-liblapack3_3.11.0-2_amd64.deb ... Unpacking liblapack3:amd64 (3.11.0-2) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../56-liblcms2-2_2.14-2_amd64.deb ... Unpacking liblcms2-2:amd64 (2.14-2) ... Selecting previously unselected package liblerc4:amd64. Preparing to unpack .../57-liblerc4_4.0.0+ds-2_amd64.deb ... Unpacking liblerc4:amd64 (4.0.0+ds-2) ... Selecting previously unselected package liblua5.3-0:amd64. Preparing to unpack .../58-liblua5.3-0_5.3.6-2_amd64.deb ... Unpacking liblua5.3-0:amd64 (5.3.6-2) ... Selecting previously unselected package libopenjp2-7:amd64. Preparing to unpack .../59-libopenjp2-7_2.5.0-1+b1_amd64.deb ... Unpacking libopenjp2-7:amd64 (2.5.0-1+b1) ... Selecting previously unselected package libraqm0:amd64. Preparing to unpack .../60-libraqm0_0.7.0-4.1_amd64.deb ... Unpacking libraqm0:amd64 (0.7.0-4.1) ... Selecting previously unselected package libwebp7:amd64. Preparing to unpack .../61-libwebp7_1.2.4-0.1_amd64.deb ... Unpacking libwebp7:amd64 (1.2.4-0.1) ... Selecting previously unselected package libtiff6:amd64. Preparing to unpack .../62-libtiff6_4.5.0-5_amd64.deb ... Unpacking libtiff6:amd64 (4.5.0-5) ... Selecting previously unselected package libwebpdemux2:amd64. Preparing to unpack .../63-libwebpdemux2_1.2.4-0.1_amd64.deb ... Unpacking libwebpdemux2:amd64 (1.2.4-0.1) ... Selecting previously unselected package libwebpmux3:amd64. Preparing to unpack .../64-libwebpmux3_1.2.4-0.1_amd64.deb ... Unpacking libwebpmux3:amd64 (1.2.4-0.1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../65-libxau6_1%3a1.0.9-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../66-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../67-libxcb1_1.15-1_amd64.deb ... Unpacking libxcb1:amd64 (1.15-1) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../68-libyaml-0-2_0.2.5-1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.5-1) ... Selecting previously unselected package pandoc-data. Preparing to unpack .../69-pandoc-data_2.17.1.1-1.1_all.deb ... Unpacking pandoc-data (2.17.1.1-1.1) ... Selecting previously unselected package pandoc. 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Setting up liblcms2-2:amd64 (2.14-2) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libicu72:amd64 (72.1-3) ... Setting up liblerc4:amd64 (4.0.0+ds-2) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libglib2.0-0:amd64 (2.74.6-2) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libmagic1:amd64 (1:5.44-3) ... Setting up libdeflate0:amd64 (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libjbig0:amd64 (2.1-6.1) ... Setting up libfontenc1:amd64 (1:1.1.4-1) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.5-2) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.8-2.1) ... Setting up libimagequant0:amd64 (2.17.0-1) ... Setting up libpng16-16:amd64 (1.6.39-2) ... Setting up autopoint (0.21-12) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:amd64 (1.2.4-0.1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libtiff6:amd64 (4.5.0-5) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up liblua5.3-0:amd64 (5.3.6-2) ... Setting up libopenjp2-7:amd64 (2.5.0-1+b1) ... Setting up libsub-override-perl (0.09-4) ... Setting up sgml-base (1.31) ... Setting up pandoc-data (2.17.1.1-1.1) ... Setting up libwebpmux3:amd64 (1.2.4-0.1) ... Setting up libbsd0:amd64 (0.11.7-2) ... Setting up mailcap (3.70+nmu1) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.1+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.7-5) ... Setting up libwebpdemux2:amd64 (1.2.4-0.1) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up pandoc (2.17.1.1-1.1) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up xml-core (0.18+nmu1) ... Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libraqm0:amd64 (0.7.0-4.1) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up bowtie2 (2.5.0-3+b2) ... Setting up python3-pil:amd64 (9.4.0-1.1+b1) ... Setting up python3-reportlab-accel:amd64 (3.6.12-1+b1) ... Setting up python3-reportlab (3.6.12-1) ... Setting up python3-lib2to3 (3.11.2-2) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-2) ... Setting up dh-python (5.20230130) ... Setting up python3-renderpm:amd64 (3.6.12-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-numpy (1:1.24.2-1) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.80+dfsg-4+b1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/metaphlan-4.0.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../metaphlan_4.0.4-1_source.changes dpkg-buildpackage: info: source package metaphlan dpkg-buildpackage: info: source version 4.0.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py clean running clean removing '/build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/metaphlan-4.0.4' dh_auto_build I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan copying metaphlan/strainphlan.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan copying metaphlan/metaphlan.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan copying metaphlan/__init__.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan creating /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/util_fun.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/strain_transmission.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/sgb_to_gtdb_profile.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/sample2markers.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/read_fastx.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/pyphlan.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/plot_tree_graphlan.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/plot_bug.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/phylophlan_controller.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/parallelisation.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/metaphlan2krona.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/merge_metaphlan_tables.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/extract_markers.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/external_exec.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/database_controller.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/consensus_markers.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/add_metadata_tree.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/__init__.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils creating /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/metaphlan_databases copying metaphlan/metaphlan_databases/README.txt -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/metaphlan_databases copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_size.txt.bz2 -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_SGB2GTDB.tsv -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103.nwk -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/calculate_diversity.R -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/VallesColomerM_2022_Nov19_thresholds.tsv -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils copying metaphlan/utils/VallesColomerM_2022_Jan21_thresholds.tsv -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils creating /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink copying metaphlan/utils/treeshrink/treeshrink.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink copying metaphlan/utils/treeshrink/run_treeshrink.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink creating /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/util_lib.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/tree_lib.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/sequence_lib.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/filter_lib.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/filemgr.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/decompose_lib.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/alignment.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/__init__.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/Tree_extend.py -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts creating /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_threshold.R -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_perspecies.R -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_pergene.R -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_allgenes.R -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_loglnorm.R -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_lnorm.R -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_lkernel.R -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_kernel.R -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_hnorm.R -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_IQR.R -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold.R -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_bootliers.R -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_adjIQR.R -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.log.R -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.R -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers.R -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_d.R -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/Rfunctions.R -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts creating /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib creating /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/NAMESPACE -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/INDEX -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/DESCRIPTION -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/CITATION -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS creating /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/html copying metaphlan/utils/treeshrink/Rlib/BMS/html/R.css -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/html copying metaphlan/utils/treeshrink/Rlib/BMS/html/00Index.html -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/html creating /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/paths.rds -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/aliases.rds -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdx -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdb -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/AnIndex -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/help creating /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/index.html -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.pdf -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.Rnw -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.R -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bmasmall.bib -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/doc creating /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/demo copying metaphlan/utils/treeshrink/Rlib/BMS/demo/BMS.growth.R -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/demo creating /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/data copying metaphlan/utils/treeshrink/Rlib/BMS/data/datafls.rda -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/data creating /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/R copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdx -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/R copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdb -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/R copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/R creating /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/vignette.rds -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/package.rds -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/nsInfo.rds -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/links.rds -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/hsearch.rds -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/features.rds -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/demo.rds -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/data.rds -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/Rd.rds -> /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta pandoc -s --from markdown --to html README.md | \ sed -e 's#"https://bitbucket.org/repo/r[Mm]969[Kk]/images#"images#' > README.html [WARNING] This document format requires a nonempty element. Defaulting to 'README' as the title. To specify a title, use 'title' in metadata or --metadata title="...". make[1]: Leaving directory '/build/metaphlan-4.0.4' dh_auto_test -O--buildsystem=pybuild I: pybuild base:240: cd /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build; python3.11 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/metaphlan/ -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/metaphlan-4.0.4/debian/metaphlan running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running install_lib creating /build/metaphlan-4.0.4/debian/metaphlan/usr creating /build/metaphlan-4.0.4/debian/metaphlan/usr/lib creating /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11 creating /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages creating /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan creating /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/__pycache__ copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/__pycache__/__init__.cpython-311.pyc -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/__pycache__ creating /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/metaphlan_databases copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/metaphlan_databases/README.txt -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/metaphlan_databases creating /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils creating /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/__pycache__ copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/__pycache__/consensus_markers.cpython-311.pyc -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/__pycache__ copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/__pycache__/phylophlan_controller.cpython-311.pyc -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/__pycache__ copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/__pycache__/database_controller.cpython-311.pyc -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/__pycache__ copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/__pycache__/external_exec.cpython-311.pyc -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/__pycache__ copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/__pycache__/parallelisation.cpython-311.pyc -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/__pycache__ copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/__pycache__/util_fun.cpython-311.pyc -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/__pycache__ copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/__pycache__/__init__.cpython-311.pyc -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/__pycache__ creating /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink creating /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib creating /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS creating /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/Rd.rds -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/data.rds -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/demo.rds -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/features.rds -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/hsearch.rds -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/links.rds -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/nsInfo.rds -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/package.rds -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/vignette.rds -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta creating /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdb -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdx -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R creating /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/data copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/data/datafls.rda -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/data creating /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/demo copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/demo/BMS.growth.R -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/demo creating /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bmasmall.bib -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.R -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.Rnw -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.pdf -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/index.html -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc creating /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/help/AnIndex -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdb -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdx -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/help/aliases.rds -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/help/paths.rds -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help creating /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/html/00Index.html -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/html/R.css -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/CITATION -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/DESCRIPTION -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/INDEX -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/Rlib/BMS/NAMESPACE -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS creating /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/Rfunctions.R -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/find_d.R -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/find_outliers.R -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.R -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.log.R -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_adjIQR.R -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_bootliers.R -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/find_threshold.R -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_IQR.R -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_hnorm.R -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_kernel.R -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_lkernel.R -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_lnorm.R -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_loglnorm.R -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/plot_allgenes.R -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/plot_pergene.R -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/plot_perspecies.R -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/R_scripts/plot_threshold.R -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/R_scripts creating /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts/Tree_extend.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts/__init__.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts/alignment.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts/decompose_lib.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts/filemgr.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts/filter_lib.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts/sequence_lib.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts/tree_lib.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/scripts/util_lib.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/run_treeshrink.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/treeshrink/treeshrink.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/VallesColomerM_2022_Jan21_thresholds.tsv -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/VallesColomerM_2022_Nov19_thresholds.tsv -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/calculate_diversity.R -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103.nwk -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_SGB2GTDB.tsv -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_size.txt.bz2 -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/__init__.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/add_metadata_tree.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/consensus_markers.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/database_controller.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/external_exec.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/extract_markers.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/merge_metaphlan_tables.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/metaphlan2krona.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/parallelisation.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/phylophlan_controller.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/plot_bug.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/plot_tree_graphlan.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/pyphlan.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/read_fastx.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/sample2markers.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/sgb_to_gtdb_profile.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/strain_transmission.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/utils/util_fun.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/__init__.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/metaphlan.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan copying /build/metaphlan-4.0.4/.pybuild/cpython3_3.11/build/metaphlan/strainphlan.py -> /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts/Tree_extend.py to Tree_extend.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts/__init__.py to __init__.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts/alignment.py to alignment.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts/decompose_lib.py to decompose_lib.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts/filemgr.py to filemgr.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts/filter_lib.py to filter_lib.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py to optimal_filter_lib.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts/sequence_lib.py to sequence_lib.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts/tree_lib.py to tree_lib.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/scripts/util_lib.py to util_lib.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/run_treeshrink.py to run_treeshrink.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/treeshrink/treeshrink.py to treeshrink.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/__init__.py to __init__.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/add_metadata_tree.py to add_metadata_tree.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/consensus_markers.py to consensus_markers.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/database_controller.py to database_controller.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/external_exec.py to external_exec.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/extract_markers.py to extract_markers.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/merge_metaphlan_tables.py to merge_metaphlan_tables.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/metaphlan2krona.py to metaphlan2krona.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/parallelisation.py to parallelisation.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/phylophlan_controller.py to phylophlan_controller.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/plot_bug.py to plot_bug.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/plot_tree_graphlan.py to plot_tree_graphlan.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/pyphlan.py to pyphlan.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/read_fastx.py to read_fastx.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/sample2markers.py to sample2markers.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/sgb_to_gtdb_profile.py to sgb_to_gtdb_profile.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/strain_transmission.py to strain_transmission.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/utils/util_fun.py to util_fun.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/__init__.py to __init__.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/metaphlan.py to metaphlan.cpython-311.pyc byte-compiling /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/metaphlan/strainphlan.py to strainphlan.cpython-311.pyc running install_egg_info running egg_info creating MetaPhlAn.egg-info writing MetaPhlAn.egg-info/PKG-INFO writing dependency_links to MetaPhlAn.egg-info/dependency_links.txt writing entry points to MetaPhlAn.egg-info/entry_points.txt writing requirements to MetaPhlAn.egg-info/requires.txt writing top-level names to MetaPhlAn.egg-info/top_level.txt writing manifest file 'MetaPhlAn.egg-info/SOURCES.txt' reading manifest file 'MetaPhlAn.egg-info/SOURCES.txt' writing manifest file 'MetaPhlAn.egg-info/SOURCES.txt' Copying MetaPhlAn.egg-info to /build/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.11/dist-packages/MetaPhlAn-4.0.4.egg-info Skipping SOURCES.txt running install_scripts Installing add_metadata_tree.py script to /build/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing extract_markers.py script to /build/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing merge_metaphlan_tables.py script to /build/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing metaphlan script to /build/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing metaphlan2krona.py script to /build/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing plot_tree_graphlan.py script to /build/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing read_fastx.py script to /build/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing run_treeshrink.py script to /build/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing sample2markers.py script to /build/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing sgb_to_gtdb_profile.py script to /build/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing strain_transmission.py script to /build/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing strainphlan script to /build/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing treeshrink.py script to /build/metaphlan-4.0.4/debian/metaphlan/usr/bin dh_installdocs -O--buildsystem=pybuild debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/metaphlan-4.0.4' dh_installchangelogs CHANGELOG.md make[1]: Leaving directory '/build/metaphlan-4.0.4' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:302: Cannot find package that provides cmseq. Please add package that provides it to Build-Depends or add "cmseq python3-cmseq" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. I: dh_python3 pydist:302: Cannot find package that provides h5py. Please add package that provides it to Build-Depends or add "h5py python3-h5py" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. I: dh_python3 pydist:302: Cannot find package that provides hclust2. Please add package that provides it to Build-Depends or add "hclust2 python3-hclust2" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. I: dh_python3 pydist:302: Cannot find package that provides phylophlan. Please add package that provides it to Build-Depends or add "phylophlan python3-phylophlan" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild debian/rules override_dh_fixperms make[1]: Entering directory '/build/metaphlan-4.0.4' dh_fixperms find debian/metaphlan -name "*.txt" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/metaphlan-4.0.4' dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'metaphlan' in '../metaphlan_4.0.4-1_all.deb'. dpkg-genbuildinfo --build=binary -O../metaphlan_4.0.4-1_amd64.buildinfo dpkg-genchanges --build=binary -O../metaphlan_4.0.4-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2227116 and its subdirectories I: Current time: Thu Apr 20 03:04:34 -12 2023 I: pbuilder-time-stamp: 1682003074 Thu Apr 20 15:05:35 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Thu Apr 20 15:05:35 UTC 2023 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Thu Apr 20 15:07:53 UTC 2023 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Thu Apr 20 15:07:54 UTC 2023 I: metaphlan_4.0.4-1_amd64.changes: Format: 1.8 Date: Wed, 01 Feb 2023 15:09:53 +0100 Source: metaphlan Binary: metaphlan Architecture: all Version: 4.0.4-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Changed-By: Andreas Tille <tille@debian.org> Description: metaphlan - Metagenomic Phylogenetic Analysis Changes: metaphlan (4.0.4-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: 5e2b9778ce192e58ebe2f928be39a592b6dc1322 2010612 metaphlan_4.0.4-1_all.deb 18ccbbdf225e21b1e2a32832aa1997db0bf45f45 6706 metaphlan_4.0.4-1_amd64.buildinfo Checksums-Sha256: 14b33661eb4da843facb0c32ed26335ea452204d8046fd079dc03e38c6fd744f 2010612 metaphlan_4.0.4-1_all.deb 89e8292e3568864a47e92c776b3392c262e6d2fa09faaf964edacab39ef988a8 6706 metaphlan_4.0.4-1_amd64.buildinfo Files: f318f642ce83ca575e00e4e996050b5a 2010612 science optional metaphlan_4.0.4-1_all.deb 177f15c6fb1c5c9268a790769311d251 6706 science optional metaphlan_4.0.4-1_amd64.buildinfo Thu Apr 20 15:08:27 UTC 2023 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.MGmp9Pn0/metaphlan_4.0.4-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.MGmp9Pn0/metaphlan_4.0.4-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.MGmp9Pn0/metaphlan_4.0.4-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.MGmp9Pn0/b1/metaphlan_4.0.4-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.MGmp9Pn0/b2/metaphlan_4.0.4-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 2.999s) 2.999s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.077s) 0.077s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Thu Apr 20 15:08:31 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Thu Apr 20 15:08:31 UTC 2023 I: metaphlan from bookworm built successfully and reproducibly on amd64. Thu Apr 20 15:08:33 UTC 2023 I: Submitting .buildinfo files to external archives: Thu Apr 20 15:08:33 UTC 2023 I: Submitting 8.0K b1/metaphlan_4.0.4-1_amd64.buildinfo.asc Thu Apr 20 15:08:34 UTC 2023 I: Submitting 8.0K b2/metaphlan_4.0.4-1_amd64.buildinfo.asc Thu Apr 20 15:08:35 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Apr 20 15:08:35 UTC 2023 I: Done submitting .buildinfo files. Thu Apr 20 15:08:35 UTC 2023 I: Removing signed metaphlan_4.0.4-1_amd64.buildinfo.asc files: removed './b1/metaphlan_4.0.4-1_amd64.buildinfo.asc' removed './b2/metaphlan_4.0.4-1_amd64.buildinfo.asc'