Mon Jun 12 20:06:26 UTC 2023 I: starting to build libbio-primerdesigner-perl/bookworm/amd64 on jenkins on '2023-06-12 20:06' Mon Jun 12 20:06:26 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_24/809/console.log Mon Jun 12 20:06:26 UTC 2023 I: Downloading source for bookworm/libbio-primerdesigner-perl=0.07-8 --2023-06-12 20:06:26-- http://cdn-fastly.deb.debian.org/debian/pool/main/libb/libbio-primerdesigner-perl/libbio-primerdesigner-perl_0.07-8.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2397 (2.3K) [text/prs.lines.tag] Saving to: ‘libbio-primerdesigner-perl_0.07-8.dsc’ 0K .. 100% 19.5M=0s 2023-06-12 20:06:26 (19.5 MB/s) - ‘libbio-primerdesigner-perl_0.07-8.dsc’ saved [2397/2397] Mon Jun 12 20:06:26 UTC 2023 I: libbio-primerdesigner-perl_0.07-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-primerdesigner-perl Binary: libbio-primerdesigner-perl Architecture: all Version: 0.07-8 Maintainer: Debian Perl Group Uploaders: gregor herrmann , Charles Plessy Homepage: https://metacpan.org/release/Bio-PrimerDesigner Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/perl-team/modules/packages/libbio-primerdesigner-perl Vcs-Git: https://salsa.debian.org/perl-team/modules/packages/libbio-primerdesigner-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13), libmodule-build-perl Build-Depends-Indep: perl, libwww-perl, libclass-base-perl, libreadonly-perl, libtest-pod-perl, libtest-pod-coverage-perl, primer3, ncbi-epcr Package-List: libbio-primerdesigner-perl deb perl optional arch=all Checksums-Sha1: 11eedf053c8a1a356ab0d75e78719e877ed6888c 27277 libbio-primerdesigner-perl_0.07.orig.tar.gz b839fee1146120a9f9b14fed04d222ce8d79fda7 5756 libbio-primerdesigner-perl_0.07-8.debian.tar.xz Checksums-Sha256: 871b2dbd86e11721d01924e13d7598fc2ec0573f747a2f2297e33d6f30be7908 27277 libbio-primerdesigner-perl_0.07.orig.tar.gz ed4577dd9aa45428d2c58a233b9a281e8d3dbb98537fc5a3f0eadfe5b0237d3a 5756 libbio-primerdesigner-perl_0.07-8.debian.tar.xz Files: 356e05bc5d855d2942c2825540c6eb05 27277 libbio-primerdesigner-perl_0.07.orig.tar.gz 65ec9b42f86209466bedbc28a4678bba 5756 libbio-primerdesigner-perl_0.07-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl+ycyoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHsEQ//dHvmbWyUbjGufZiphNIayb5RTHjDWlM8 FjdgykxxnRPjPtGAaQs0JeGri/VrzM80qFe7sLwgSTYC5JrmVQiIxewALtJ1qPO2 LOA2IVvyrrO4HuUX8lmaGT5G5dK2oRuqWtNetEPBKUheX2gieX/Rni/+uUgkc74f QiZVJfAYXSs/632RL8BEYt8S5gP3ZFI4XYxLz1tCyDxabCubTTpPJDpSkftylbnS 7ewBN0qW5rZJMSGptzn1DeHbMPumGsleTmEn0Wi5hm/4mfvQBxq1HqEFD/BstHhO JzjmVY9CLpWF2T7BwQgWL4zX2hKe4JhRxF7xbcuL+j0algej23tnZCbnhe/TkY57 XStwMtFEb+w/fBzjkYcEWbVIti4GzTMcNHJpkzqJbrpK/3S2QC9GzXPvDnLVVRnc q3KfJUtGsE2gjAz9vZVUp8F921xOYXKd/HqEY+d1olEFG7loL9lYu1TOFBXqBBDM otQGJ10TAspWGDdZec3QXE3VogNk9sNmGb5Fx5AGVEFnZU89bmwZqRjF7OOpM7fA eu1lwcPeM3a3Kq4CqNioEwMQwe85kjNbo+MOrH60SjmJIwo5fGqA97j9KMI17S+a KBkwuptSKYiCFXz1e+pmYBP5iN+pgDWXFuE39hXlh/k/0k0OGy08u+BcSv/JbpoM agB51cTjYb8= =ITYm -----END PGP SIGNATURE----- Mon Jun 12 20:06:26 UTC 2023 I: Checking whether the package is not for us Mon Jun 12 20:06:26 UTC 2023 I: Starting 1st build on remote node ionos15-amd64.debian.net. Mon Jun 12 20:06:26 UTC 2023 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Mon Jun 12 20:06:55 UTC 2023 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Jun 12 08:06:27 -12 2023 I: pbuilder-time-stamp: 1686600387 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] tar: ./build: time stamp 2024-07-11 04:48:10 is 34116102.304107226 s in the future tar: ./dev/shm: time stamp 2024-07-14 12:31:13 is 34403085.303979782 s in the future tar: ./dev/null: time stamp 2024-07-11 04:47:36 is 34116068.303890547 s in the future tar: ./dev/zero: time stamp 2024-07-11 04:47:36 is 34116068.303853978 s in the future tar: ./dev/full: time stamp 2024-07-11 04:47:36 is 34116068.303818432 s in the future tar: ./dev/random: time stamp 2024-07-11 04:47:36 is 34116068.303782446 s in the future tar: ./dev/urandom: time stamp 2024-07-11 04:47:36 is 34116068.303744255 s in the future tar: ./dev/tty: time stamp 2024-07-11 04:47:36 is 34116068.303709955 s in the future tar: ./dev/console: time stamp 2024-07-11 04:47:36 is 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2024-07-11 04:48:22 is 34116107.826660983 s in the future tar: ./usr/lib/locale/ar_EG/LC_MESSAGES: time stamp 2024-07-11 04:48:22 is 34116107.826638805 s in the future tar: ./usr/lib/locale/ar_EG: time stamp 2024-07-11 04:48:22 is 34116107.82660645 s in the future tar: ./usr/lib/locale/ar_DZ.utf8/LC_MESSAGES: time stamp 2024-07-11 04:48:22 is 34116107.826584096 s in the future tar: ./usr/lib/locale/ar_DZ.utf8: time stamp 2024-07-11 04:48:22 is 34116107.82656124 s in the future tar: ./usr/lib/locale/ar_DZ/LC_MESSAGES: time stamp 2024-07-11 04:48:22 is 34116107.826537186 s in the future tar: ./usr/lib/locale/ar_DZ: time stamp 2024-07-11 04:48:22 is 34116107.826515081 s in the future tar: ./usr/lib/locale/ar_BH.utf8/LC_MESSAGES: time stamp 2024-07-11 04:48:22 is 34116107.82649286 s in the future tar: ./usr/lib/locale/ar_BH.utf8: time stamp 2024-07-11 04:48:22 is 34116107.826470337 s in the future tar: ./usr/lib/locale/ar_BH/LC_MESSAGES: time stamp 2024-07-11 04:48:22 is 34116107.826445354 s in the future tar: ./usr/lib/locale/ar_BH: time stamp 2024-07-11 04:48:22 is 34116107.82642308 s in the future tar: ./usr/lib/locale/ar_AE.utf8: time stamp 2024-07-11 04:48:22 is 34116107.826400275 s in the future tar: ./usr/lib/locale/anp_IN: time stamp 2024-07-11 04:48:22 is 34116107.826378591 s in the future tar: ./usr/lib/locale/an_ES.utf8: time stamp 2024-07-11 04:48:22 is 34116107.826356027 s in the future tar: ./usr/lib/locale/am_ET: time stamp 2024-07-11 04:48:22 is 34116107.826334116 s in the future tar: ./usr/lib/locale/ak_GH: time stamp 2024-07-11 04:48:22 is 34116107.826312197 s in the future tar: ./usr/lib/locale/agr_PE: time stamp 2024-07-11 04:48:22 is 34116107.826289863 s in the future tar: ./usr/lib/locale/af_ZA.utf8: time stamp 2024-07-11 04:48:22 is 34116107.826267985 s in the future tar: ./usr/lib/locale/af_ZA: time stamp 2024-07-11 04:48:22 is 34116107.826243523 s in the future tar: ./usr/lib/locale/aa_ET/LC_MESSAGES: time stamp 2024-07-11 04:48:22 is 34116107.826221162 s in the future tar: ./usr/lib/locale/aa_ET: time stamp 2024-07-11 04:48:22 is 34116107.826198958 s in the future tar: ./usr/lib/locale/aa_ER@saaho/LC_MESSAGES: time stamp 2024-07-11 04:48:22 is 34116107.826176244 s in the future tar: ./usr/lib/locale/aa_ER@saaho: time stamp 2024-07-11 04:48:22 is 34116107.82615393 s in the future tar: ./usr/lib/locale/aa_ER/LC_MESSAGES: time stamp 2024-07-11 04:48:22 is 34116107.826131664 s in the future tar: ./usr/lib/locale/aa_ER: time stamp 2024-07-11 04:48:22 is 34116107.826108956 s in the future tar: ./usr/lib/locale: time stamp 2024-07-11 04:48:21 is 34116106.826087185 s in the future tar: ./usr/lib/apt/planners: time stamp 2024-07-11 04:47:40 is 34116065.826064333 s in the future tar: ./usr/lib/apt: time stamp 2024-07-11 04:47:40 is 34116065.826042447 s in the future tar: ./usr/lib/x86_64-linux-gnu/perl/cross-config-5.36.0: time stamp 2024-07-11 04:47:48 is 34116073.82601951 s in the future tar: ./usr/lib/x86_64-linux-gnu/perl: time stamp 2024-07-11 04:47:33 is 34116058.825995285 s in the future tar: ./usr/lib/x86_64-linux-gnu: time stamp 2024-07-11 04:48:19 is 34116104.82597336 s in the future tar: ./usr/lib: time stamp 2024-07-11 04:48:07 is 34116092.825949465 s in the future tar: ./usr: time stamp 2024-07-11 04:47:37 is 34116062.825928507 s in the future tar: ./run: time stamp 2024-07-14 12:31:13 is 34403078.825906932 s in the future tar: ./lib64: time stamp 2024-07-11 04:47:44 is 34116069.825885243 s in the future tar: ./lib: time stamp 2024-07-11 04:48:10 is 34116095.825864192 s in the future tar: ./etc/systemd/system/multi-user.target.wants: time stamp 2024-07-11 04:47:55 is 34116080.825841753 s in the future tar: ./etc/systemd/system/timers.target.wants: time stamp 2024-07-11 04:47:57 is 34116082.825819514 s in the future tar: ./etc/systemd/system: time stamp 2024-07-11 04:47:55 is 34116080.825796804 s in the future tar: ./etc/rcS.d: time stamp 2024-07-11 04:47:54 is 34116079.825759987 s in the future tar: ./etc/rc6.d: time stamp 2024-07-11 04:47:54 is 34116079.825731333 s in the future tar: ./etc/rc0.d: time stamp 2024-07-11 04:47:54 is 34116079.825709498 s in the future tar: ./etc/alternatives: time stamp 2024-07-11 04:48:22 is 34116107.825688389 s in the future tar: ./etc: time stamp 2024-07-14 12:31:13 is 34403078.825666437 s in the future tar: ./dev: time stamp 2024-07-14 12:31:13 is 34403078.825645839 s in the future tar: ./bin: time stamp 2024-07-11 04:48:19 is 34116104.825624524 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbio-primerdesigner-perl_0.07-8.dsc] I: copying [./libbio-primerdesigner-perl_0.07.orig.tar.gz] I: copying [./libbio-primerdesigner-perl_0.07-8.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Nov 16 00:40:10 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbio-primerdesigner-perl_0.07-8.dsc: no acceptable signature found dpkg-source: info: extracting libbio-primerdesigner-perl in libbio-primerdesigner-perl-0.07 dpkg-source: info: unpacking libbio-primerdesigner-perl_0.07.orig.tar.gz dpkg-source: info: unpacking libbio-primerdesigner-perl_0.07-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying build.pl-getopt-long.patch dpkg-source: info: applying no-hash-manipulation-inside-each.patch dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/181602/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='8ce51e37412b4c6fb23a1e516e22dc71' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='181602' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.U58PET0L/pbuilderrc_8Mxg --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.U58PET0L/b1 --logfile b1/build.log libbio-primerdesigner-perl_0.07-8.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos15-amd64 6.1.0-9-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.27-1 (2023-05-08) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/181602/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libmodule-build-perl, perl, libwww-perl, libclass-base-perl, libreadonly-perl, libtest-pod-perl, libtest-pod-coverage-perl, primer3, ncbi-epcr dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19591 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libmodule-build-perl; however: Package libmodule-build-perl is not installed. pbuilder-satisfydepends-dummy depends on libwww-perl; however: Package libwww-perl is not installed. pbuilder-satisfydepends-dummy depends on libclass-base-perl; however: Package libclass-base-perl is not installed. pbuilder-satisfydepends-dummy depends on libreadonly-perl; however: Package libreadonly-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-pod-perl; however: Package libtest-pod-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-pod-coverage-perl; however: Package libtest-pod-coverage-perl is not installed. pbuilder-satisfydepends-dummy depends on primer3; however: Package primer3 is not installed. pbuilder-satisfydepends-dummy depends on ncbi-epcr; however: Package ncbi-epcr is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libclass-base-perl{a} libclone-perl{a} libdebhelper-perl{a} libdevel-symdump-perl{a} libelf1{a} libencode-locale-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libio-html-perl{a} libio-socket-ssl-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1{a} libmodule-build-perl{a} libnet-http-perl{a} libnet-ssleay-perl{a} libpipeline1{a} libpod-coverage-perl{a} libpod-parser-perl{a} libreadonly-perl{a} libregexp-ipv6-perl{a} libsub-override-perl{a} libtest-pod-coverage-perl{a} libtest-pod-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2{a} m4{a} man-db{a} ncbi-epcr{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} primer3{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libdata-dump-perl libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmodule-signature-perl libpod-readme-perl libsoftware-license-perl lynx wget 0 packages upgraded, 66 newly installed, 0 to remove and 0 not upgraded. Need to get 22.6 MB of archives. After unpacking 81.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 netbase all 6.4 [12.8 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.9-1 [1416 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 24 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libclone-perl amd64 0.46-1 [13.7 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 libclass-base-perl all 0.09-2 [17.8 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libdevel-symdump-perl all 2.18-5 [15.8 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 libhttp-date-perl all 6.05-2 [10.5 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libfile-listing-perl all 6.15-1 [12.6 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libhtml-tagset-perl all 3.20-6 [11.7 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 libregexp-ipv6-perl all 0.03-3 [5212 B] Get: 43 http://deb.debian.org/debian bookworm/main amd64 liburi-perl all 5.17-1 [90.4 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 libhtml-parser-perl amd64 3.81-1 [101 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 libhttp-message-perl all 6.44-1 [81.7 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 perl-openssl-defaults amd64 7+b1 [7924 B] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libnet-ssleay-perl amd64 1.92-2+b1 [317 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 libio-socket-ssl-perl all 2.081-2 [219 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libnet-http-perl all 6.22-1 [25.3 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 libwww-perl all 6.68-1 [186 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 libmodule-build-perl all 0.423200-1 [253 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libpod-parser-perl all 1.65-1 [96.3 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libpod-coverage-perl all 0.23-2 [22.1 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 libreadonly-perl all 2.050-3 [23.1 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 libtest-pod-coverage-perl all 1.10-3 [14.9 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 libtest-pod-perl all 1.52-2 [12.9 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 ncbi-epcr amd64 2.3.12-1-9 [168 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 primer3 amd64 2.6.1-4 [202 kB] Fetched 22.6 MB in 0s (68.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19591 files and directories currently installed.) Preparing to unpack .../00-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.0.9-1_amd64.deb ... Unpacking openssl (3.0.9-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../05-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.38.1-5+b1_amd64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.11.2-2_amd64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../18-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../19-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../20-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../21-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../22-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../23-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../24-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../25-libelf1_0.188-2.1_amd64.deb ... Unpacking libelf1:amd64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../26-dwz_0.15-1_amd64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../27-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../28-libxml2_2.9.14+dfsg-1.2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.21-12_amd64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package libclone-perl:amd64. Preparing to unpack .../33-libclone-perl_0.46-1_amd64.deb ... Unpacking libclone-perl:amd64 (0.46-1) ... Selecting previously unselected package libclass-base-perl. Preparing to unpack .../34-libclass-base-perl_0.09-2_all.deb ... Unpacking libclass-base-perl (0.09-2) ... Selecting previously unselected package libdevel-symdump-perl. Preparing to unpack .../35-libdevel-symdump-perl_2.18-5_all.deb ... Unpacking libdevel-symdump-perl (2.18-5) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../36-libencode-locale-perl_1.05-3_all.deb ... Unpacking libencode-locale-perl (1.05-3) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../37-libtimedate-perl_2.3300-2_all.deb ... Unpacking libtimedate-perl (2.3300-2) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../38-libhttp-date-perl_6.05-2_all.deb ... Unpacking libhttp-date-perl (6.05-2) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../39-libfile-listing-perl_6.15-1_all.deb ... Unpacking libfile-listing-perl (6.15-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../40-libhtml-tagset-perl_3.20-6_all.deb ... Unpacking libhtml-tagset-perl (3.20-6) ... Selecting previously unselected package libregexp-ipv6-perl. Preparing to unpack .../41-libregexp-ipv6-perl_0.03-3_all.deb ... Unpacking libregexp-ipv6-perl (0.03-3) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../42-liburi-perl_5.17-1_all.deb ... Unpacking liburi-perl (5.17-1) ... Selecting previously unselected package libhtml-parser-perl:amd64. Preparing to unpack .../43-libhtml-parser-perl_3.81-1_amd64.deb ... Unpacking libhtml-parser-perl:amd64 (3.81-1) ... Selecting previously unselected package libhtml-tree-perl. Preparing to unpack .../44-libhtml-tree-perl_5.07-3_all.deb ... Unpacking libhtml-tree-perl (5.07-3) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../45-libio-html-perl_1.004-3_all.deb ... Unpacking libio-html-perl (1.004-3) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../46-liblwp-mediatypes-perl_6.04-2_all.deb ... Unpacking liblwp-mediatypes-perl (6.04-2) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../47-libhttp-message-perl_6.44-1_all.deb ... Unpacking libhttp-message-perl (6.44-1) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../48-libhttp-cookies-perl_6.10-1_all.deb ... Unpacking libhttp-cookies-perl (6.10-1) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../49-libhttp-negotiate-perl_6.01-2_all.deb ... Unpacking libhttp-negotiate-perl (6.01-2) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../50-perl-openssl-defaults_7+b1_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (7+b1) ... Selecting previously unselected package libnet-ssleay-perl:amd64. Preparing to unpack .../51-libnet-ssleay-perl_1.92-2+b1_amd64.deb ... Unpacking libnet-ssleay-perl:amd64 (1.92-2+b1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../52-libio-socket-ssl-perl_2.081-2_all.deb ... Unpacking libio-socket-ssl-perl (2.081-2) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../53-libnet-http-perl_6.22-1_all.deb ... Unpacking libnet-http-perl (6.22-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../54-libtry-tiny-perl_0.31-2_all.deb ... Unpacking libtry-tiny-perl (0.31-2) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../55-libwww-robotrules-perl_6.02-1_all.deb ... Unpacking libwww-robotrules-perl (6.02-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../56-libwww-perl_6.68-1_all.deb ... Unpacking libwww-perl (6.68-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../57-liblwp-protocol-https-perl_6.10-1_all.deb ... Unpacking liblwp-protocol-https-perl (6.10-1) ... Selecting previously unselected package libmodule-build-perl. Preparing to unpack .../58-libmodule-build-perl_0.423200-1_all.deb ... Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Unpacking libmodule-build-perl (0.423200-1) ... Selecting previously unselected package libpod-parser-perl. Preparing to unpack .../59-libpod-parser-perl_1.65-1_all.deb ... Adding 'diversion of /usr/bin/podselect to /usr/bin/podselect.bundled by libpod-parser-perl' Adding 'diversion of /usr/share/man/man1/podselect.1.gz to /usr/share/man/man1/podselect.bundled.1.gz by libpod-parser-perl' Unpacking libpod-parser-perl (1.65-1) ... Selecting previously unselected package libpod-coverage-perl. Preparing to unpack .../60-libpod-coverage-perl_0.23-2_all.deb ... Unpacking libpod-coverage-perl (0.23-2) ... Selecting previously unselected package libreadonly-perl. Preparing to unpack .../61-libreadonly-perl_2.050-3_all.deb ... Unpacking libreadonly-perl (2.050-3) ... Selecting previously unselected package libtest-pod-coverage-perl. Preparing to unpack .../62-libtest-pod-coverage-perl_1.10-3_all.deb ... Unpacking libtest-pod-coverage-perl (1.10-3) ... Selecting previously unselected package libtest-pod-perl. Preparing to unpack .../63-libtest-pod-perl_1.52-2_all.deb ... Unpacking libtest-pod-perl (1.52-2) ... Selecting previously unselected package ncbi-epcr. Preparing to unpack .../64-ncbi-epcr_2.3.12-1-9_amd64.deb ... Unpacking ncbi-epcr (2.3.12-1-9) ... Selecting previously unselected package primer3. Preparing to unpack .../65-primer3_2.6.1-4_amd64.deb ... Unpacking primer3 (2.6.1-4) ... Setting up libpipeline1:amd64 (1.5.7-1) ... Setting up libicu72:amd64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libclone-perl:amd64 (0.46-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.20-6) ... Setting up libdebhelper-perl (13.11.4) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libtest-pod-perl (1.52-2) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up libmagic1:amd64 (1:5.44-3) ... Setting up perl-openssl-defaults:amd64 (7+b1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.44-3) ... Setting up libmodule-build-perl (0.423200-1) ... Setting up libreadonly-perl (2.050-3) ... Setting up primer3 (2.6.1-4) ... Setting up autotools-dev (20220109.1) ... Setting up libio-html-perl (1.004-3) ... Setting up libpod-parser-perl (1.65-1) ... Setting up autopoint (0.21-12) ... Setting up libclass-base-perl (0.09-2) ... Setting up autoconf (2.71-3) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libregexp-ipv6-perl (0.03-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up netbase (6.4) ... Setting up libdevel-symdump-perl (2.18-5) ... Setting up openssl (3.0.9-1) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.2) ... Setting up liburi-perl (5.17-1) ... Setting up ncbi-epcr (2.3.12-1-9) ... Setting up libnet-ssleay-perl:amd64 (1.92-2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libhttp-date-perl (6.05-2) ... Setting up gettext (0.21-12) ... Setting up libfile-listing-perl (6.15-1) ... Setting up libtool (2.4.7-5) ... Setting up libpod-coverage-perl (0.23-2) ... Setting up libnet-http-perl (6.22-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libhtml-parser-perl:amd64 (3.81-1) ... Setting up libtest-pod-coverage-perl (1.10-3) ... Setting up libio-socket-ssl-perl (2.081-2) ... Setting up libhttp-message-perl (6.44-1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.11.4) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up libwww-perl (6.68-1) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/libbio-primerdesigner-perl-0.07/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-primerdesigner-perl_0.07-8_source.changes dpkg-buildpackage: info: source package libbio-primerdesigner-perl dpkg-buildpackage: info: source version 0.07-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=perl_build dh_auto_clean -O--buildsystem=perl_build dh_autoreconf_clean -O--buildsystem=perl_build dh_clean -O--buildsystem=perl_build debian/rules binary dh binary --buildsystem=perl_build dh_update_autotools_config -O--buildsystem=perl_build dh_autoreconf -O--buildsystem=perl_build dh_auto_configure -O--buildsystem=perl_build /usr/bin/perl Build.PL --installdirs vendor --config "optimize=-g -O2 -ffile-prefix-map=/build/libbio-primerdesigner-perl-0.07=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" --config "ld=x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/build/libbio-primerdesigner-perl-0.07=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro" Use of uninitialized value $url in concatenation (.) or string at Build.PL line 62, <$in_fh> line 42. Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Bio-PrimerDesigner' version '0.04' Now run './Build' and './Build install' dh_auto_build -O--buildsystem=perl_build /usr/bin/perl Build Building Bio-PrimerDesigner debian/rules override_dh_auto_test make[1]: Entering directory '/build/libbio-primerdesigner-perl-0.07' RES_OPTIONS=attempts:0 dh_auto_test -- --test_files "t/epcr.t t/pod-coverage.t t/pod.t t/primer3.t t/primer_designer.t t/result.t t/tables.t" /usr/bin/perl Build test --verbose 1 --test_files "t/epcr.t t/pod-coverage.t t/pod.t t/primer3.t t/primer_designer.t t/result.t t/tables.t" Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. t/epcr.t ............. 1..8 ok 1 - use Bio::PrimerDesigner; ok 2 - An object of class 'Bio::PrimerDesigner' isa 'Bio::PrimerDesigner' ok 3 - 'program' isa 'Bio::PrimerDesigner::epcr' ok 4 - binary_name is "e-PCR" ok 5 - program returns params ok 6 - program returns no aliases ok 7 - e-PCR verification fails with no args ok 8 - run method fails with no arguments ok t/pod-coverage.t ..... 1..8 ok 1 - Pod coverage on Bio::PrimerDesigner ok 2 - Pod coverage on Bio::PrimerDesigner::primer3 ok 3 - Pod coverage on Bio::PrimerDesigner::ispcr ok 4 - Pod coverage on Bio::PrimerDesigner::epcr ok 5 - Pod coverage on Bio::PrimerDesigner::Tables ok 6 - Pod coverage on Bio::PrimerDesigner::Result ok 7 - Pod coverage on Bio::PrimerDesigner::Remote ok 8 - Pod coverage on Bio::PrimerDesigner::Config ok t/pod.t .............. 1..9 ok 1 - POD test for blib/script/primer_designer ok 2 - POD test for blib/lib/Bio/PrimerDesigner.pm ok 3 - POD test for blib/lib/Bio/PrimerDesigner/primer3.pm ok 4 - POD test for blib/lib/Bio/PrimerDesigner/ispcr.pm ok 5 - POD test for blib/lib/Bio/PrimerDesigner/epcr.pm ok 6 - POD test for blib/lib/Bio/PrimerDesigner/Tables.pm ok 7 - POD test for blib/lib/Bio/PrimerDesigner/Result.pm ok 8 - POD test for blib/lib/Bio/PrimerDesigner/Remote.pm ok 9 - POD test for blib/lib/Bio/PrimerDesigner/Config.pm ok Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. t/primer3.t .......... 1..7 ok 1 - use Bio::PrimerDesigner; ok 2 - An object of class 'Bio::PrimerDesigner' isa 'Bio::PrimerDesigner' ok 3 - 'program' isa 'Bio::PrimerDesigner::primer3' ok 4 - binary_name is "primer3" ok 5 - program returns params ok 6 - program returns aliases ok 7 - design method fails without arguments ok Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. t/primer_designer.t .. 1..22 ok 1 - use Bio::PrimerDesigner; ok 2 - An object of class 'Bio::PrimerDesigner' isa 'Bio::PrimerDesigner' ok 3 - An object of class 'Bio::PrimerDesigner::primer3' isa 'Bio::PrimerDesigner::primer3' ok 4 - Default method for unix-like OS is "local" ok 5 - Default binary path for unix-like OS is "/usr/local/bin" ok 6 - binary_path set to "/bin" ok 7 - binary_path rejects bad arg ok 8 - Error message set ok 9 - binary_path remembers last good arg ok 10 - 'object with args' isa 'Bio::PrimerDesigner' ok 11 - method is "remote" ok 12 - url is "https://www.google.com/" ok 13 - An object of class 'Bio::PrimerDesigner::epcr' isa 'Bio::PrimerDesigner::epcr' ok 14 - method set to "remote" ok 15 - method rejects bad arg ok 16 - Error message set ok 17 - method remembers last good arg ok 18 - url set to "http://www.google.com" ok 19 - 'program' isa 'Bio::PrimerDesigner::epcr' ok 20 - program rejects bad arg ok 21 - Error message set ok 22 - 'program still' isa 'Bio::PrimerDesigner::epcr' ok Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. t/result.t ........... 1..3 ok 1 - use Bio::PrimerDesigner; ok 2 # skip Can't get remote server call to work ok 3 # skip Can't get remote server call to work ok Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. t/tables.t ........... 1..10 ok 1 - use Bio::PrimerDesigner::Tables; ok 2 - An object of class 'Bio::PrimerDesigner::Tables' isa 'Bio::PrimerDesigner::Tables' ok 3 # skip Can't get remote server call to work ok 4 # skip Can't get remote server call to work ok 5 # skip Can't get remote server call to work ok 6 # skip Can't get remote server call to work ok 7 # skip Can't get remote server call to work ok 8 # skip Can't get remote server call to work ok 9 # skip Can't get remote server call to work ok 10 # skip Can't get remote server call to work ok All tests successful. Files=7, Tests=67, 1 wallclock secs ( 0.04 usr 0.02 sys + 1.14 cusr 0.22 csys = 1.42 CPU) Result: PASS make[1]: Leaving directory '/build/libbio-primerdesigner-perl-0.07' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=perl_build dh_prep -O--buildsystem=perl_build debian/rules override_dh_auto_install make[1]: Entering directory '/build/libbio-primerdesigner-perl-0.07' dh_auto_install /usr/bin/perl Build install --destdir /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl --create_packlist 0 Building Bio-PrimerDesigner Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man1/primer_designer.1p Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner.pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/primer3.pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/ispcr.pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/epcr.pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/Tables.pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/Result.pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/Remote.pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/Config.pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::primer3.3pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::ispcr.3pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::epcr.3pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Tables.3pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Result.3pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Remote.3pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Config.3pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner.3pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/bin/primer_designer # remove empty manpage without whatis entry rm -f -v /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Config.3pm removed '/build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Config.3pm' make[1]: Leaving directory '/build/libbio-primerdesigner-perl-0.07' dh_installdocs -O--buildsystem=perl_build dh_installchangelogs -O--buildsystem=perl_build dh_installman -O--buildsystem=perl_build dh_installsystemduser -O--buildsystem=perl_build dh_perl -O--buildsystem=perl_build dh_link -O--buildsystem=perl_build dh_strip_nondeterminism -O--buildsystem=perl_build dh_compress -O--buildsystem=perl_build dh_fixperms -O--buildsystem=perl_build dh_missing -O--buildsystem=perl_build dh_installdeb -O--buildsystem=perl_build dh_gencontrol -O--buildsystem=perl_build dh_md5sums -O--buildsystem=perl_build dh_builddeb -O--buildsystem=perl_build dpkg-deb: building package 'libbio-primerdesigner-perl' in '../libbio-primerdesigner-perl_0.07-8_all.deb'. dpkg-genbuildinfo --build=binary -O../libbio-primerdesigner-perl_0.07-8_amd64.buildinfo dpkg-genchanges --build=binary -O../libbio-primerdesigner-perl_0.07-8_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/181602 and its subdirectories I: Current time: Mon Jun 12 08:06:55 -12 2023 I: pbuilder-time-stamp: 1686600415 Mon Jun 12 20:06:56 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Mon Jun 12 20:06:56 UTC 2023 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Mon Jun 12 20:07:34 UTC 2023 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Mon Jun 12 20:07:34 UTC 2023 I: libbio-primerdesigner-perl_0.07-8_amd64.changes: Format: 1.8 Date: Mon, 16 Nov 2020 12:51:28 +0100 Source: libbio-primerdesigner-perl Binary: libbio-primerdesigner-perl Architecture: all Version: 0.07-8 Distribution: unstable Urgency: medium Maintainer: Debian Perl Group Changed-By: Andreas Tille Description: libbio-primerdesigner-perl - Perl module to design PCR primers using primer3 and epcr Changes: libbio-primerdesigner-perl (0.07-8) unstable; urgency=medium . * Team upload. * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target (routine- update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) Checksums-Sha1: f3f996a3c6a739860dccda7addcc4af4c654c4e2 43676 libbio-primerdesigner-perl_0.07-8_all.deb e51c07a3c896ccefafaf9197a21197dd853a2d06 6048 libbio-primerdesigner-perl_0.07-8_amd64.buildinfo Checksums-Sha256: 4d18a2d935e46b7d70a03d649a95e1c18e26eabcafc677970604f800fc863ea0 43676 libbio-primerdesigner-perl_0.07-8_all.deb 717dd3c8537632bb7bf753b44cb11daa63f8696293b23b6be4c84982118d8582 6048 libbio-primerdesigner-perl_0.07-8_amd64.buildinfo Files: a7b2c71bd5367242d8306e9685d170f7 43676 perl optional libbio-primerdesigner-perl_0.07-8_all.deb f29f88e896854abaec86103bf551c519 6048 perl optional libbio-primerdesigner-perl_0.07-8_amd64.buildinfo Mon Jun 12 20:07:36 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.U58PET0L/libbio-primerdesigner-perl_0.07-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.U58PET0L/libbio-primerdesigner-perl_0.07-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.U58PET0L/libbio-primerdesigner-perl_0.07-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.U58PET0L/b1/libbio-primerdesigner-perl_0.07-8_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.U58PET0L/b2/libbio-primerdesigner-perl_0.07-8_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.380s) 0.380s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.018s) 0.018s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Mon Jun 12 20:07:37 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Mon Jun 12 20:07:37 UTC 2023 I: libbio-primerdesigner-perl from bookworm built successfully and reproducibly on amd64. Mon Jun 12 20:07:38 UTC 2023 I: Submitting .buildinfo files to external archives: Mon Jun 12 20:07:38 UTC 2023 I: Submitting 8.0K b1/libbio-primerdesigner-perl_0.07-8_amd64.buildinfo.asc Mon Jun 12 20:07:39 UTC 2023 I: Submitting 8.0K b2/libbio-primerdesigner-perl_0.07-8_amd64.buildinfo.asc Mon Jun 12 20:07:40 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Jun 12 20:07:40 UTC 2023 I: Done submitting .buildinfo files. Mon Jun 12 20:07:40 UTC 2023 I: Removing signed libbio-primerdesigner-perl_0.07-8_amd64.buildinfo.asc files: removed './b1/libbio-primerdesigner-perl_0.07-8_amd64.buildinfo.asc' removed './b2/libbio-primerdesigner-perl_0.07-8_amd64.buildinfo.asc'